Query 032814
Match_columns 133
No_of_seqs 106 out of 158
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p06a1 a.204.1.3 (A:1-84) Hyp 23.5 11 0.00078 24.0 0.6 19 105-123 46-64 (84)
2 d1ykwa2 d.58.9.1 (A:4-145) Rib 13.5 9.8 0.00071 26.3 -1.6 23 45-67 105-129 (142)
3 d1rkla_ f.23.30.1 (A:) Oligosa 12.6 28 0.0021 19.0 0.6 13 42-54 12-24 (36)
4 d2p7tc1 f.14.1.1 (C:86-119) Po 10.8 69 0.005 17.0 1.8 12 50-61 9-22 (34)
5 d1ijda_ f.3.1.1 (A:) Light-har 9.5 81 0.0059 18.0 2.0 11 44-54 14-24 (46)
6 d2o70a1 a.288.1.1 (A:2-166) OH 8.7 17 0.0012 25.2 -1.7 10 43-52 113-122 (165)
7 d2q37a1 a.288.1.1 (A:6-160) OH 8.6 17 0.0012 25.2 -1.7 9 43-51 101-109 (155)
8 d2o8ia1 a.288.1.1 (A:1-165) Hy 8.5 17 0.0013 25.1 -1.7 9 43-51 110-118 (165)
9 d1ppjw_ f.23.14.1 (W:) Subunit 8.4 90 0.0066 18.7 2.0 25 31-61 9-33 (62)
10 d1yuja_ g.37.1.1 (A:) GAGA fac 8.3 31 0.0023 20.3 -0.3 38 8-45 16-53 (54)
No 1
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.52 E-value=11 Score=24.02 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=13.1
Q ss_pred HHHHHHHhhcCCCCccccc
Q 032814 105 EELKALQEKVDINNYEYKR 123 (133)
Q Consensus 105 eEY~rLq~k~d~ddWEnkR 123 (133)
||...|...+.-+||||.|
T Consensus 46 eemdelreavekedwenlr 64 (84)
T d2p06a1 46 EEMDELREAVEKEDWENLR 64 (84)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555557779999976
No 2
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=13.49 E-value=9.8 Score=26.31 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=17.6
Q ss_pred cchhHHHHHHH--HHHHHHhhhhhh
Q 032814 45 GLPMISLTVFG--AIGLGHLLQGSK 67 (133)
Q Consensus 45 GLPFl~liVgG--SfgL~~ftq~RY 67 (133)
+||.|+.+|.| +|++..+..+|-
T Consensus 105 ~l~~ll~~i~GN~~~~~~~v~~~rL 129 (142)
T d1ykwa2 105 KIPNLLTAVCGEGTYFTPGVPVVKL 129 (142)
T ss_dssp CHHHHHHHHSSHHHHCCTTCCEEEE
T ss_pred cHHHHHHHHhccccccccccceeEE
Confidence 58977776666 799988887774
No 3
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.65 E-value=28 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=10.5
Q ss_pred eeecchhHHHHHH
Q 032814 42 VRYGLPMISLTVF 54 (133)
Q Consensus 42 l~fGLPFl~liVg 54 (133)
+-||+-||.+||.
T Consensus 12 i~fgi~mmtlivi 24 (36)
T d1rkla_ 12 ITFGIVMMTLIVI 24 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 4589999998885
No 4
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=10.78 E-value=69 Score=17.04 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=7.4
Q ss_pred HHHHHH--HHHHHH
Q 032814 50 SLTVFG--AIGLGH 61 (133)
Q Consensus 50 ~liVgG--SfgL~~ 61 (133)
..||+| ||||-.
T Consensus 9 vvmvagits~glv~ 22 (34)
T d2p7tc1 9 VVMVAGITSFGLVT 22 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhHH
Confidence 455665 777754
No 5
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=9.49 E-value=81 Score=18.00 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=7.5
Q ss_pred ecchhHHHHHH
Q 032814 44 YGLPMISLTVF 54 (133)
Q Consensus 44 fGLPFl~liVg 54 (133)
.|||.++--|+
T Consensus 14 vG~Pl~LgsVa 24 (46)
T d1ijda_ 14 FGLPLMLGAVA 24 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred cCchhHHHHHH
Confidence 69998765444
No 6
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=8.68 E-value=17 Score=25.19 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=8.1
Q ss_pred eecchhHHHH
Q 032814 43 RYGLPMISLT 52 (133)
Q Consensus 43 ~fGLPFl~li 52 (133)
+||.||++.+
T Consensus 113 kFGfpFIi~v 122 (165)
T d2o70a1 113 RFGFPFVICA 122 (165)
T ss_dssp HHSSCCCCCG
T ss_pred HcCCeeEEee
Confidence 6899999754
No 7
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.60 E-value=17 Score=25.23 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=7.4
Q ss_pred eecchhHHH
Q 032814 43 RYGLPMISL 51 (133)
Q Consensus 43 ~fGLPFl~l 51 (133)
+||.|||+.
T Consensus 101 kFGfpFIi~ 109 (155)
T d2q37a1 101 KFGFIFIIC 109 (155)
T ss_dssp HHSSCCCCC
T ss_pred HcCCeeEEe
Confidence 689999864
No 8
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.51 E-value=17 Score=25.07 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.6
Q ss_pred eecchhHHH
Q 032814 43 RYGLPMISL 51 (133)
Q Consensus 43 ~fGLPFl~l 51 (133)
+||.|||+.
T Consensus 110 kFGfpFIi~ 118 (165)
T d2o8ia1 110 KFGFPFIIA 118 (165)
T ss_dssp HHSSCCCCC
T ss_pred HcCCeeEEe
Confidence 689999974
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.43 E-value=90 Score=18.68 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=16.9
Q ss_pred hhhhccccCCceeecchhHHHHHHHHHHHHH
Q 032814 31 PFKRWGRKHPFVRYGLPMISLTVFGAIGLGH 61 (133)
Q Consensus 31 ~y~r~~~knpFl~fGLPFl~liVgGSfgL~~ 61 (133)
-|.-+.|+|.. |++.|++|+|....
T Consensus 9 lYn~lfrRnSt------f~~tI~~gAf~fE~ 33 (62)
T d1ppjw_ 9 LYSLLFRRTST------FALTIVVGALFFER 33 (62)
T ss_dssp HHHHHTSSHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhH------HHHHHHHHHHHHHH
Confidence 35555655554 67888899887654
No 10
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=8.29 E-value=31 Score=20.29 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.8
Q ss_pred hccCCCCCCCCCCccccCCCCchhhhhccccCCceeec
Q 032814 8 TAMSQSDKPKNVSTKSSKAQTPSPFKRWGRKHPFVRYG 45 (133)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~a~~y~r~~~knpFl~fG 45 (133)
..-|+||.|-.-|--..+-......+|++.=.+|.+-|
T Consensus 16 ksrs~s~qpatcpic~avirqsrnlrrhlel~hf~kpg 53 (54)
T d1yuja_ 16 RSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG 53 (54)
T ss_dssp TTTTTTSCCEECTTTCCEESSHHHHHHHHHHHTSCSCC
T ss_pred cccccccCCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Confidence 35688999988887766666667777776666665554
Done!