BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032817
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRR 94
DYY+IL V +A+++EI+ Y +LA K+HPD KD A +F ++ EAY+VLSD VKR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 95 EYDSKG 100
+YD+ G
Sbjct: 68 QYDAYG 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVL 87
SL + Y +L +D +AT ++I+ +Y +LALK+HPDK D A +F+EIN A+ +L
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 88 SDPVKRREYDSKGMLHIY 105
+D KR YD G L +Y
Sbjct: 71 TDATKRNIYDKYGSLGLY 88
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 94 REYDSKG 100
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 94 REYDSKG 100
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+VL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 94 REYDSKG 100
YD G
Sbjct: 63 AAYDQYG 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRR 94
DYY+IL V A++E+++ Y RLALK+HPDK AT F+ I AY VLS+P KR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRK 66
Query: 95 EYDSKG 100
+YD G
Sbjct: 67 QYDQFG 72
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRRE 95
YY IL V A+E +I+ + +LA+K+HPDK K D A ++F+EI EAY+ LSD +R+E
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKE 67
Query: 96 YDSKG 100
YD+ G
Sbjct: 68 YDTLG 72
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQVLSDPVKR 93
DYY++L+V A+ E I+ Y +LALKWHPDK ++++ A RF+++ EAY+VLSD KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 94 REYDSKG 100
YD G
Sbjct: 70 DIYDRYG 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
KDYY+ L + A++EEI+ Y R AL++HPDK K+ A +F+EI EAY VLSDP KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKR 61
Query: 94 REYDSKG 100
+D G
Sbjct: 62 EIFDRYG 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQVLSDPVKR 93
+YY++L V A+ E+I+ Y +LAL+WHPDK D ++ A +F+ ++EAY+VLSD KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 94 REYDSKG 100
YD G
Sbjct: 70 SLYDRAG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQVLSDPVKRR 94
YY+IL+V A+ ++I+ Y R AL+WHPDK D ++ A +F+E+ EAY+VLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 95 EYDSKG 100
YD G
Sbjct: 64 IYDRYG 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSD 89
+ K YY +L V +AT+EE++ Y +LALK+HPDK + +F++I++AY+VLSD
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSD 58
Query: 90 PVKRREYDSKG 100
KR YD G
Sbjct: 59 AKKRELYDKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSD 89
+ K YY +L V DA++ E++ Y ++ALK+HPDK D +F++I++AY+VLSD
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSD 60
Query: 90 PVKRREYDSKG 100
KR+ YD G
Sbjct: 61 EKKRQIYDQGG 71
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREY 96
Y +L V A E+E++ Y + ALK+HPDK T +F+EI+EA+++L+DP KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP---TGDTEKFKEISEAFEILNDPQKREIY 67
Query: 97 DSKGM 101
D G+
Sbjct: 68 DQYGL 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVL 87
SL A D Y++L V A++ +I+ Y +LA +WHPDK KD A RF +I++AY++L
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEIL 69
Query: 88 SDPVKRREYDSKG 100
S+ KR YD G
Sbjct: 70 SNEEKRTNYDHYG 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+++Y +L V A+ EIR + +LALK HPDK + A F +IN AY+VL D R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 94 REYDSKGMLHIYDRNIIEY 112
++YD G + D +Y
Sbjct: 81 KKYDKYGEKGLEDNQGGQY 99
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+++Y +L V A+ EIR + +LALK HPDK + A F +IN AY+VL D R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 94 REYDSKGMLHIYDRNIIEY 112
++YD G + D +Y
Sbjct: 62 KKYDKYGEKGLEDNQGGQY 80
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
KDYY I+ V + I++ Y RLA K+HPD K+ D A +RF+E+ EA++VLSD +R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWEVLSDEQRR 63
Query: 94 REYD 97
EYD
Sbjct: 64 AEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
N F S + KDYY IL V + I++ Y RLA K+HPD K+ D A ++F+++ E
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAE 75
Query: 83 AYQVLSDPVKRREYD 97
A++VL D +R EYD
Sbjct: 76 AWEVLKDEQRRAEYD 90
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 2 MWDEWV-------DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
M+DE + + N ND+Q ++ L ++ +DYYKIL V +A ++EI
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKA 402
Query: 55 YIRLALKWHPDKQKD---RDCATSRFQEINEAYQVLSDPVKRREYD 97
Y +LAL+WHPD ++ + A +F +I A +VLSDP R+++D
Sbjct: 403 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 10 NNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69
N ND+Q ++ L ++ +DYYKIL V +A ++EI Y +LAL+WHPD ++
Sbjct: 359 NENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417
Query: 70 ---RDCATSRFQEINEAYQVLSDPVKRREYD 97
+ A +F +I A +VLSDP R+++D
Sbjct: 418 EEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREY 96
Y +L V AT+ +I++ Y R +HPD+ A RF I++AY VL RR+Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 97 DSKGML 102
D +G+L
Sbjct: 80 D-RGLL 84
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS------RFQEINEAYQVL 87
KD+Y IL D A +++ Y +L L +HPDKQ A + +F EI++A+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 88 SDPVKRREYD 97
+ +REYD
Sbjct: 70 GNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK-DRDCAT-----SRFQEINEAYQVL 87
KD+Y IL D A +++ Y +L L +HPDKQ D T +F EI++A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 88 SDPVKRREYD 97
+ +++YD
Sbjct: 76 GNEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93
+DYY +L D ++ E+I + + AL+ HPDK + A FQ++ +A ++L++ R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 94 REYD 97
YD
Sbjct: 80 ARYD 83
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 35 DYYKI--LEVDYDATEEEIRSNYIRLALKWHPD-----KQKDRDCATSRFQEINEAYQVL 87
+Y+++ L + ++ + S + L ++HPD ++DR A + +IN+AYQ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 88 SDPVKRREY 96
DP++R EY
Sbjct: 65 KDPLRRAEY 73
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVK 92
PK + K L + + + +R Y +L + HPD + +S +N+AY L DP++
Sbjct: 10 PKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSST---LNQAYHTLKDPLR 65
Query: 93 RREY 96
R +Y
Sbjct: 66 RSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVK 92
PK + K L + + + +R Y +L + HPD + +S +N+AY L DP++
Sbjct: 18 PKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSS---TLNQAYHTLKDPLR 73
Query: 93 RREYDSKGMLHI 104
R +Y K + +I
Sbjct: 74 RSQYMLKLLRNI 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 37 YKILEVDYDATEEE-IRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQVLSDPVK 92
Y +LEV+ + +++ + Y LA K HPD+ K+++ A RF+ I AY+ L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 93 RREYD 97
+ YD
Sbjct: 78 KTNYD 82
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 35 DYYKI--LEVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINEAYQVL 87
DY+ + L Y + + + L ++HPDK Q ++ A + IN+A+Q L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 88 SDPVKRREY 96
P+ R EY
Sbjct: 62 RHPLMRAEY 70
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 169 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 220
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 172 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 223
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 168 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 219
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 162 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 213
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 170 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 221
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 167 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 218
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRN 108
EE+RS+YIR +K +QK ++ RF ++ + L D VK+ LH+Y N
Sbjct: 165 EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQ--------LHLYCLN 216
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEI 80
K+ ++E + E E + RL LKWHPDK ++ D A F+ +
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 73 ATSRFQEINEAYQVLSDPVKRREYD----SKGMLHIYDRNIIEYLNRYKGLILTCNGLGM 128
+S++Q +V D V R ++D +G+ R +Y N YK + +TCNGLG
Sbjct: 322 GSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPN-YKKIYITCNGLGY 380
Query: 129 RHSIV 133
+ V
Sbjct: 381 KDEFV 385
>pdb|2PKE|A Chain A, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
pdb|2PKE|B Chain B, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
Length = 251
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 22 VNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLA 59
V FD L K +DYY+ E D++A I S Y+ L
Sbjct: 16 VGFDGDDTLWKSEDYYRTAEADFEA----ILSGYLDLG 49
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 51 IRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVK 92
+R Y++ ++HPDK D + + +++N Y+ + D VK
Sbjct: 30 MRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMEDGVK 67
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 23 NFDFLSLLAKPKDYYKILE-VDYDA 46
F+ + L+ KPK YY+I E VDY
Sbjct: 6 TFEAMELIGKPKPYYEIGERVDYKC 30
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 51 IRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVK 92
+R Y++ ++HPDK D + + +++N Y+ + D VK
Sbjct: 27 MRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMEDGVK 64
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex
With Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex
With Adenovirus Type 11 Knob
Length = 252
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 23 NFDFLSLLAKPKDYYKILE-VDY 44
F+ + L+ KPK YY+I E VDY
Sbjct: 6 TFEAMELIGKPKPYYEIGERVDY 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,337,750
Number of Sequences: 62578
Number of extensions: 165867
Number of successful extensions: 488
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 54
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)