Query 032817
Match_columns 133
No_of_seqs 167 out of 1108
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2E-26 4.4E-31 184.1 9.6 87 32-118 2-100 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.1E-25 2.4E-30 176.6 8.3 83 24-106 6-88 (336)
3 PRK14288 chaperone protein Dna 99.9 3E-22 6.4E-27 161.5 7.8 71 34-104 3-73 (369)
4 PRK14286 chaperone protein Dna 99.9 9.7E-22 2.1E-26 158.6 9.0 71 33-103 3-73 (372)
5 KOG0712 Molecular chaperone (D 99.9 1.2E-21 2.6E-26 155.0 7.7 71 33-106 3-73 (337)
6 PRK14296 chaperone protein Dna 99.9 1.2E-21 2.7E-26 158.0 7.6 70 33-103 3-72 (372)
7 PRK14287 chaperone protein Dna 99.8 3.3E-21 7.1E-26 155.5 9.3 85 33-118 3-97 (371)
8 PRK14298 chaperone protein Dna 99.8 4.1E-21 8.9E-26 155.2 8.3 72 32-104 3-74 (377)
9 PRK14279 chaperone protein Dna 99.8 3.3E-21 7.2E-26 156.4 7.1 69 33-101 8-76 (392)
10 PRK14285 chaperone protein Dna 99.8 7.2E-21 1.6E-25 153.2 8.8 70 34-103 3-72 (365)
11 PRK14294 chaperone protein Dna 99.8 8.4E-21 1.8E-25 152.9 9.1 72 33-104 3-74 (366)
12 PRK14297 chaperone protein Dna 99.8 9E-21 1.9E-25 153.4 8.7 72 33-104 3-74 (380)
13 PRK14276 chaperone protein Dna 99.8 1.1E-20 2.3E-25 152.9 8.8 70 33-103 3-72 (380)
14 PTZ00037 DnaJ_C chaperone prot 99.8 7.7E-21 1.7E-25 155.4 7.7 82 33-118 27-112 (421)
15 PRK14280 chaperone protein Dna 99.8 1.4E-20 3E-25 152.1 8.9 70 33-103 3-72 (376)
16 PRK14277 chaperone protein Dna 99.8 1.2E-20 2.7E-25 152.8 8.0 71 33-103 4-74 (386)
17 PRK14299 chaperone protein Dna 99.8 2.3E-20 5E-25 146.3 9.2 69 33-102 3-71 (291)
18 PRK14282 chaperone protein Dna 99.8 1.7E-20 3.7E-25 151.3 8.2 72 33-104 3-75 (369)
19 PRK14283 chaperone protein Dna 99.8 1.6E-20 3.5E-25 151.8 7.7 72 32-104 3-74 (378)
20 PRK14278 chaperone protein Dna 99.8 2.8E-20 6.1E-25 150.4 9.0 68 34-102 3-70 (378)
21 PRK14301 chaperone protein Dna 99.8 2.5E-20 5.3E-25 150.5 7.5 71 33-103 3-73 (373)
22 KOG0716 Molecular chaperone (D 99.8 1.6E-20 3.4E-25 143.8 5.4 73 33-105 30-102 (279)
23 PF00226 DnaJ: DnaJ domain; I 99.8 3.2E-20 7E-25 114.6 5.7 63 35-97 1-64 (64)
24 PRK14284 chaperone protein Dna 99.8 4.6E-20 1E-24 149.7 7.7 69 35-103 2-70 (391)
25 PRK14290 chaperone protein Dna 99.8 8.6E-20 1.9E-24 147.0 9.0 71 34-104 3-74 (365)
26 PRK14291 chaperone protein Dna 99.8 5.1E-20 1.1E-24 149.1 7.5 70 33-103 2-71 (382)
27 PRK14295 chaperone protein Dna 99.8 5.4E-20 1.2E-24 149.2 7.6 71 33-103 8-82 (389)
28 PRK10767 chaperone protein Dna 99.8 6.9E-20 1.5E-24 147.7 8.1 72 33-104 3-74 (371)
29 PRK14281 chaperone protein Dna 99.8 6.1E-20 1.3E-24 149.3 7.3 70 34-103 3-72 (397)
30 TIGR02349 DnaJ_bact chaperone 99.8 1.5E-19 3.2E-24 144.9 8.4 69 35-104 1-69 (354)
31 PRK14289 chaperone protein Dna 99.8 1.4E-19 2.9E-24 146.7 7.8 72 33-104 4-75 (386)
32 KOG0691 Molecular chaperone (D 99.8 1.6E-19 3.4E-24 141.3 7.2 84 33-116 4-90 (296)
33 PRK14292 chaperone protein Dna 99.8 3.3E-19 7.2E-24 143.8 8.7 69 34-103 2-70 (371)
34 PRK14293 chaperone protein Dna 99.8 4.4E-19 9.5E-24 143.3 9.0 70 34-104 3-72 (374)
35 PTZ00341 Ring-infected erythro 99.8 4.2E-19 9.2E-24 154.4 9.0 76 31-107 570-645 (1136)
36 KOG0718 Molecular chaperone (D 99.8 2.1E-19 4.5E-24 146.0 6.6 74 32-105 7-83 (546)
37 KOG0715 Molecular chaperone (D 99.8 4.9E-19 1.1E-23 138.6 7.3 68 35-103 44-111 (288)
38 PRK14300 chaperone protein Dna 99.8 4.5E-19 9.7E-24 143.1 7.1 70 34-104 3-72 (372)
39 PRK10266 curved DNA-binding pr 99.8 1E-18 2.2E-23 137.8 6.8 67 34-101 4-70 (306)
40 KOG0719 Molecular chaperone (D 99.8 1.6E-18 3.6E-23 130.4 7.5 71 33-103 13-85 (264)
41 KOG0717 Molecular chaperone (D 99.8 1.7E-18 3.6E-23 140.5 7.7 83 31-113 5-94 (508)
42 smart00271 DnaJ DnaJ molecular 99.7 6.5E-18 1.4E-22 102.7 6.5 58 34-91 1-59 (60)
43 KOG0721 Molecular chaperone (D 99.7 1E-17 2.2E-22 124.9 7.2 73 32-104 97-169 (230)
44 cd06257 DnaJ DnaJ domain or J- 99.7 1.7E-17 3.6E-22 99.2 6.5 55 35-89 1-55 (55)
45 TIGR03835 termin_org_DnaJ term 99.7 3.7E-17 8E-22 139.7 8.3 86 34-120 2-91 (871)
46 PHA03102 Small T antigen; Revi 99.7 1.3E-16 2.9E-21 114.4 7.0 69 34-106 5-75 (153)
47 COG2214 CbpA DnaJ-class molecu 99.7 1.9E-16 4.2E-21 116.2 6.9 69 31-99 3-72 (237)
48 PRK05014 hscB co-chaperone Hsc 99.6 1.4E-15 3E-20 111.2 7.1 66 34-99 1-73 (171)
49 PRK01356 hscB co-chaperone Hsc 99.6 2.5E-15 5.5E-20 109.3 7.4 67 34-100 2-73 (166)
50 PRK00294 hscB co-chaperone Hsc 99.6 3.7E-15 7.9E-20 109.1 7.9 68 32-99 2-76 (173)
51 PRK03578 hscB co-chaperone Hsc 99.6 4.8E-15 1E-19 108.8 7.5 66 33-98 5-77 (176)
52 KOG0720 Molecular chaperone (D 99.5 6.3E-15 1.4E-19 119.9 5.9 73 30-103 231-303 (490)
53 KOG0624 dsRNA-activated protei 99.5 5.7E-15 1.2E-19 117.6 5.2 70 29-98 389-461 (504)
54 KOG0722 Molecular chaperone (D 99.5 1.4E-14 3E-19 110.7 3.9 72 30-102 29-100 (329)
55 KOG0550 Molecular chaperone (D 99.5 4.2E-14 9.1E-19 114.3 4.9 77 29-105 368-445 (486)
56 PHA02624 large T antigen; Prov 99.4 1.6E-13 3.6E-18 115.9 6.5 83 32-118 9-98 (647)
57 PRK01773 hscB co-chaperone Hsc 99.4 8.2E-13 1.8E-17 96.7 7.3 66 34-99 2-74 (173)
58 KOG0714 Molecular chaperone (D 99.4 3.4E-13 7.4E-18 103.2 5.0 73 33-105 2-75 (306)
59 PTZ00100 DnaJ chaperone protei 99.4 5.3E-13 1.2E-17 91.5 5.3 52 33-88 64-115 (116)
60 PRK09430 djlA Dna-J like membr 99.4 5.7E-13 1.2E-17 103.5 5.2 59 31-89 197-262 (267)
61 COG5407 SEC63 Preprotein trans 99.3 2.6E-12 5.7E-17 104.9 5.3 74 32-105 96-174 (610)
62 KOG1150 Predicted molecular ch 99.2 8.9E-12 1.9E-16 92.4 4.4 62 34-95 53-115 (250)
63 KOG0568 Molecular chaperone (D 99.2 1.1E-11 2.4E-16 94.0 4.2 95 33-131 46-146 (342)
64 TIGR00714 hscB Fe-S protein as 99.2 8.1E-11 1.8E-15 85.0 6.9 56 45-100 2-62 (157)
65 COG5269 ZUO1 Ribosome-associat 98.9 8.8E-10 1.9E-14 85.4 4.2 70 31-100 40-114 (379)
66 KOG1789 Endocytosis protein RM 98.5 1.7E-07 3.8E-12 83.5 5.1 52 34-88 1281-1336(2235)
67 KOG0723 Molecular chaperone (D 98.4 4.5E-07 9.7E-12 61.0 5.1 52 35-90 57-108 (112)
68 KOG3192 Mitochondrial J-type c 98.3 5.7E-07 1.2E-11 64.4 4.0 71 29-99 3-80 (168)
69 KOG0431 Auxilin-like protein a 97.7 6.4E-05 1.4E-09 62.6 4.7 75 6-86 366-447 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.2 0.00025 5.4E-09 51.9 2.9 67 35-101 2-75 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.0 0.0005 1.1E-08 50.3 2.7 57 31-87 110-173 (174)
72 PF03656 Pam16: Pam16; InterP 96.0 0.017 3.7E-07 40.3 4.9 53 35-91 59-111 (127)
73 PF13446 RPT: A repeated domai 89.3 1.1 2.4E-05 26.9 4.5 27 34-60 5-31 (62)
74 PF11833 DUF3353: Protein of u 88.4 1.5 3.2E-05 32.7 5.5 38 43-88 1-38 (194)
75 PF14687 DUF4460: Domain of un 87.1 1.9 4.1E-05 29.4 5.0 47 45-91 5-55 (112)
76 KOG0724 Zuotin and related mol 81.9 1.8 3.9E-05 34.4 3.5 54 45-98 3-60 (335)
77 COG5552 Uncharacterized conser 77.3 11 0.00023 24.0 5.2 37 33-69 2-38 (88)
78 PF10041 DUF2277: Uncharacteri 68.8 27 0.00059 22.2 5.8 55 33-88 2-60 (78)
79 KOG3442 Uncharacterized conser 60.5 12 0.00026 26.1 3.1 33 37-69 62-94 (132)
80 PF07709 SRR: Seven Residue Re 50.2 12 0.00025 15.8 1.1 13 76-88 2-14 (14)
81 PF15178 TOM_sub5: Mitochondri 43.9 31 0.00068 19.9 2.5 24 37-60 2-25 (51)
82 PF03206 NifW: Nitrogen fixati 40.9 75 0.0016 21.4 4.5 60 27-86 8-73 (105)
83 PF14706 Tnp_DNA_bind: Transpo 38.9 58 0.0013 19.5 3.3 42 48-91 14-57 (58)
84 PF12434 Malate_DH: Malate deh 33.9 61 0.0013 16.5 2.4 18 47-64 9-26 (28)
85 PF14027 DUF4243: Protein of u 33.7 13 0.00027 29.6 -0.2 72 44-116 16-87 (329)
86 COG2879 Uncharacterized small 32.4 1.2E+02 0.0025 18.7 3.9 25 54-80 27-51 (65)
87 COG0089 RplW Ribosomal protein 30.1 52 0.0011 21.8 2.3 22 39-60 25-46 (94)
88 PF07739 TipAS: TipAS antibiot 28.6 1.7E+02 0.0036 18.9 5.2 48 41-97 51-99 (118)
89 CHL00030 rpl23 ribosomal prote 28.4 59 0.0013 21.3 2.3 21 39-59 23-43 (93)
90 cd00084 HMG-box High Mobility 28.2 1.2E+02 0.0026 17.1 5.1 41 52-97 12-52 (66)
91 cd01388 SOX-TCF_HMG-box SOX-TC 28.1 1.4E+02 0.003 17.9 4.9 40 53-97 14-53 (72)
92 COG3755 Uncharacterized protei 27.8 1.3E+02 0.0028 21.0 4.0 45 45-96 47-92 (127)
93 cd01390 HMGB-UBF_HMG-box HMGB- 24.1 1.5E+02 0.0033 16.9 5.0 38 55-97 15-52 (66)
94 PF08447 PAS_3: PAS fold; Int 23.9 11 0.00024 22.9 -1.7 29 34-66 6-35 (91)
95 PF03820 Mtc: Tricarboxylate c 23.9 83 0.0018 25.2 2.8 25 43-67 45-69 (308)
96 cd01780 PLC_epsilon_RA Ubiquit 23.6 98 0.0021 20.4 2.7 34 33-66 10-43 (93)
97 KOG0527 HMG-box transcription 23.5 1.3E+02 0.0029 24.4 3.9 40 54-98 76-115 (331)
98 TIGR03636 L23_arch archaeal ri 23.5 85 0.0018 19.8 2.3 21 39-59 18-38 (77)
99 PF00076 RRM_1: RNA recognitio 23.0 68 0.0015 18.2 1.8 23 39-61 3-25 (70)
100 PF12725 DUF3810: Protein of u 22.7 1.7E+02 0.0036 23.4 4.4 58 33-90 81-149 (318)
101 PF06767 Sif: Sif protein; In 21.7 1.8E+02 0.0039 23.6 4.3 40 52-95 44-83 (337)
102 PRK05738 rplW 50S ribosomal pr 21.3 97 0.0021 20.1 2.3 21 39-59 24-44 (92)
103 PF04282 DUF438: Family of unk 20.3 48 0.001 20.7 0.7 26 40-65 7-32 (71)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-26 Score=184.10 Aligned_cols=87 Identities=44% Similarity=0.711 Sum_probs=77.5
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccc----
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDR---- 107 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~---- 107 (133)
..+|||+||||+++||.+|||+|||+|+++||||+++..++|+++|++|++||++|+||++|+.||++|.......
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 4679999999999999999999999999999999999666799999999999999999999999999998876511
Q ss_pred --------cHHHHHHHhcC
Q 032817 108 --------NIIEYLNRYKG 118 (133)
Q Consensus 108 --------~~~~~~~~~~~ 118 (133)
++.|.|..+++
T Consensus 82 ~g~~~fgg~~~DIF~~~Fg 100 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFG 100 (371)
T ss_pred CCcCCCCCCHHHHHHHhhc
Confidence 36777777774
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-25 Score=176.56 Aligned_cols=83 Identities=42% Similarity=0.715 Sum_probs=77.1
Q ss_pred hhhhhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 24 FDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 24 ~~~~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..........+|||+||||+.+|+..+||+|||+|++++|||+|++.+.|.+.|+.|+.||++|+||++|+.||++|+.+
T Consensus 6 ~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 6 LSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccc
Q 032817 104 IYD 106 (133)
Q Consensus 104 ~~~ 106 (133)
+..
T Consensus 86 L~~ 88 (336)
T KOG0713|consen 86 LKD 88 (336)
T ss_pred hcc
Confidence 774
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3e-22 Score=161.46 Aligned_cols=71 Identities=45% Similarity=0.718 Sum_probs=66.5
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
.|||+||||+++||.++||+|||+|+++||||+++..++|+++|++|++||++|+||.+|+.||++|...+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 69999999999999999999999999999999998655689999999999999999999999999987643
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.7e-22 Score=158.62 Aligned_cols=71 Identities=45% Similarity=0.787 Sum_probs=66.5
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|+++||||+++..++|.++|++|++||++|+||.+|+.||++|...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 36999999999999999999999999999999999866669999999999999999999999999998654
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-21 Score=154.98 Aligned_cols=71 Identities=51% Similarity=0.782 Sum_probs=67.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD 106 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~ 106 (133)
...||+||||+++|+.+|||+|||+|+++|||||+++ +.++|++|..||++|+||++|..||++|+.++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~ 73 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG 73 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence 4589999999999999999999999999999999998 7899999999999999999999999999887753
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=158.00 Aligned_cols=70 Identities=46% Similarity=0.672 Sum_probs=65.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||.+|+.||++|...
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 46999999999999999999999999999999999764 48999999999999999999999999998654
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.3e-21 Score=155.49 Aligned_cols=85 Identities=36% Similarity=0.663 Sum_probs=72.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc------
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD------ 106 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~------ 106 (133)
..|||++|||+++|+.++||+|||+|+++||||+++.+ .++++|++|++||++|+||.+|+.||++|...+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG 81 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC
Confidence 46999999999999999999999999999999998764 48899999999999999999999999998764321
Q ss_pred ----ccHHHHHHHhcC
Q 032817 107 ----RNIIEYLNRYKG 118 (133)
Q Consensus 107 ----~~~~~~~~~~~~ 118 (133)
.++.++|+.|++
T Consensus 82 ~~~f~~~~d~f~~~fg 97 (371)
T PRK14287 82 AGDFGGFSDIFDMFFG 97 (371)
T ss_pred CccccchHHHHHhhhc
Confidence 124466666654
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.1e-21 Score=155.21 Aligned_cols=72 Identities=49% Similarity=0.801 Sum_probs=66.2
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
...|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|++|++||++|+||.+|+.||++|...+
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 357999999999999999999999999999999999764 488999999999999999999999999986543
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.3e-21 Score=156.44 Aligned_cols=69 Identities=46% Similarity=0.722 Sum_probs=65.3
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
..|||+||||+++|+.++||+|||+|+++||||+++..+.|.++|++|++||++|+||++|+.||++|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999998666699999999999999999999999999874
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=7.2e-21 Score=153.25 Aligned_cols=70 Identities=44% Similarity=0.735 Sum_probs=66.0
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
.|||++|||+++|+.++||+|||+|+++||||+++..+.|.++|++|++||++|+||.+|..||++|...
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 6999999999999999999999999999999999876668999999999999999999999999988653
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=8.4e-21 Score=152.88 Aligned_cols=72 Identities=49% Similarity=0.779 Sum_probs=67.1
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..|||+||||+++|+.++||+|||+|+++||||+++..+++.+.|++|++||++|+||.+|+.||++|...+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 479999999999999999999999999999999998766689999999999999999999999999987543
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9e-21 Score=153.36 Aligned_cols=72 Identities=47% Similarity=0.847 Sum_probs=66.9
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..|||+||||+++|+.++||+|||+|+++||||+++..+.|+++|++|++||++|+||.+|+.||++|...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 369999999999999999999999999999999998766699999999999999999999999999987543
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=152.95 Aligned_cols=70 Identities=41% Similarity=0.748 Sum_probs=65.3
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
.+|||+||||+++|+.++||+|||+|+++||||+++++. |.++|++|++||++|+||.+|+.||++|...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcC-HHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 369999999999999999999999999999999998654 8999999999999999999999999998654
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.83 E-value=7.7e-21 Score=155.41 Aligned_cols=82 Identities=38% Similarity=0.640 Sum_probs=70.1
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc----cc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD----RN 108 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~----~~ 108 (133)
..|||+||||+++||.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++|...+.. .+
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d 102 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPAD 102 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcc
Confidence 4699999999999999999999999999999999863 489999999999999999999999998764431 24
Q ss_pred HHHHHHHhcC
Q 032817 109 IIEYLNRYKG 118 (133)
Q Consensus 109 ~~~~~~~~~~ 118 (133)
+.+++..|++
T Consensus 103 ~~d~f~~~Fg 112 (421)
T PTZ00037 103 ASDLFDLIFG 112 (421)
T ss_pred hhhhHHHhhc
Confidence 5566666554
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.4e-20 Score=152.11 Aligned_cols=70 Identities=44% Similarity=0.775 Sum_probs=65.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|++++|||+++++. |.++|++|++||++|+||.+|+.||++|...
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 369999999999999999999999999999999998654 8999999999999999999999999998654
No 16
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=152.82 Aligned_cols=71 Identities=55% Similarity=0.843 Sum_probs=66.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|+++||||+++..+.|+++|++|++||++|+||.+|..||++|...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 46999999999999999999999999999999999866668999999999999999999999999988654
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=2.3e-20 Score=146.26 Aligned_cols=69 Identities=52% Similarity=0.817 Sum_probs=64.5
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGML 102 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~ 102 (133)
..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|+.|++||++|+||.+|..||++|..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 36999999999999999999999999999999999754 4899999999999999999999999998865
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.7e-20 Score=151.25 Aligned_cols=72 Identities=50% Similarity=0.841 Sum_probs=66.1
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..|||+||||+++|+.++||+|||+|+++||||+++.. ..|.++|++|++||++|+||.+|+.||++|....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 46999999999999999999999999999999998753 4589999999999999999999999999986543
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=151.79 Aligned_cols=72 Identities=44% Similarity=0.764 Sum_probs=66.5
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
+..|||++|||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||.+|..||++|...+
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE-GAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 357999999999999999999999999999999999864 489999999999999999999999999987544
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.8e-20 Score=150.41 Aligned_cols=68 Identities=46% Similarity=0.706 Sum_probs=64.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGML 102 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~ 102 (133)
.|||+||||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||.+|..||++|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE-EAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH-HHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 6999999999999999999999999999999999864 4899999999999999999999999998864
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.5e-20 Score=150.52 Aligned_cols=71 Identities=45% Similarity=0.776 Sum_probs=66.5
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|++++|||+++..++|+++|++|++||++|+||.+|+.||++|...
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 46999999999999999999999999999999999876668999999999999999999999999988654
No 22
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-20 Score=143.78 Aligned_cols=73 Identities=48% Similarity=0.761 Sum_probs=68.7
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
..++|+||||+++|+.++|||+||+|++++|||++++.+++.++|+.|++||++|+||.+|..||.+|..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 5689999999999999999999999999999999999777999999999999999999999999999877643
No 23
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.81 E-value=3.2e-20 Score=114.58 Aligned_cols=63 Identities=48% Similarity=0.842 Sum_probs=59.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh-HHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
|||+||||+++++.++||++|+++++.+|||+.+... .+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999977654 68999999999999999999999998
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.6e-20 Score=149.72 Aligned_cols=69 Identities=49% Similarity=0.766 Sum_probs=65.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
|||+||||+++|+.++||+|||+|+++||||++++...|.++|++|++||++|+||.+|+.||++|...
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 899999999999999999999999999999999876669999999999999999999999999998654
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=8.6e-20 Score=146.97 Aligned_cols=71 Identities=52% Similarity=0.914 Sum_probs=65.6
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh-HHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
.|||+||||+++|+.++||+|||+|++++|||+++... .|.++|++|++||++|+||.+|..||++|...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 59999999999999999999999999999999987643 689999999999999999999999999886543
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.1e-20 Score=149.07 Aligned_cols=70 Identities=57% Similarity=0.842 Sum_probs=65.1
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|++|++||++|+||.+|+.||++|...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 36999999999999999999999999999999999874 48899999999999999999999999988653
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.4e-20 Score=149.22 Aligned_cols=71 Identities=54% Similarity=0.778 Sum_probs=65.9
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhh----cCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDS----KGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~----~g~~~ 103 (133)
..|||+||||+++|+.++||+|||+|+++||||+++....|+++|++|++||++|+||.+|+.||+ +|...
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g 82 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG 82 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence 369999999999999999999999999999999998666689999999999999999999999998 77644
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6.9e-20 Score=147.74 Aligned_cols=72 Identities=46% Similarity=0.822 Sum_probs=66.6
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..|||+||||+++|+.++||+|||+|++++|||+++....|.++|++|++||++|+||.+|..||++|....
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 469999999999999999999999999999999998655689999999999999999999999999886543
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.1e-20 Score=149.28 Aligned_cols=70 Identities=49% Similarity=0.811 Sum_probs=65.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
.|||+||||+++|+.++||+|||+|++++|||+++....|.+.|++|++||++|+||.+|..||++|...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 6999999999999999999999999999999999876668999999999999999999999999988654
No 30
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.80 E-value=1.5e-19 Score=144.94 Aligned_cols=69 Identities=57% Similarity=0.908 Sum_probs=63.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
|||+||||+++|+.++||+|||+|++++|||+++.+ .+.++|++|++||++|+||.+|..||.+|....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDK-EAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 699999999999999999999999999999999743 488999999999999999999999999886543
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.4e-19 Score=146.73 Aligned_cols=72 Identities=43% Similarity=0.724 Sum_probs=67.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..|||++|||+++|+.++||+|||+|++++|||+++..++|.++|++|++||++|+||.+|+.||++|...+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 469999999999999999999999999999999998776799999999999999999999999999987543
No 32
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-19 Score=141.32 Aligned_cols=84 Identities=36% Similarity=0.570 Sum_probs=75.6
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccc---cH
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDR---NI 109 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~---~~ 109 (133)
..|||+||||+++++..+|++|||+.+++||||++|+.+.|.+.|+.+.+||++|+|+..|+.||..|....... +.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~ 83 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ 83 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence 569999999999999999999999999999999999988899999999999999999999999999998887766 44
Q ss_pred HHHHHHh
Q 032817 110 IEYLNRY 116 (133)
Q Consensus 110 ~~~~~~~ 116 (133)
.++++..
T Consensus 84 ~~~~r~~ 90 (296)
T KOG0691|consen 84 ADGFRKK 90 (296)
T ss_pred HHHHHHH
Confidence 4444333
No 33
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=3.3e-19 Score=143.79 Aligned_cols=69 Identities=49% Similarity=0.821 Sum_probs=64.5
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
.|||+||||+++|+.++||+|||+|++++|||++++. .+.++|+.|++||++|+||.+|+.||.+|...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 4899999999999999999999999999999999864 48999999999999999999999999988653
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=4.4e-19 Score=143.28 Aligned_cols=70 Identities=50% Similarity=0.823 Sum_probs=65.1
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
.|||+||||+++|+.++||+|||+|++++|||+++++. +.++|+.|++||++|+||.+|+.||.+|...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcC-HHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 69999999999999999999999999999999998654 88999999999999999999999999887543
No 35
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.78 E-value=4.2e-19 Score=154.36 Aligned_cols=76 Identities=33% Similarity=0.490 Sum_probs=70.2
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDR 107 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~ 107 (133)
....+||+||||+++|+..+||+|||+|++++|||+++.+ .|.++|+.|.+||++|+||.+|+.||.+|..++...
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~ 645 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV 645 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCC
Confidence 3567999999999999999999999999999999999876 488999999999999999999999999998876654
No 36
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.1e-19 Score=146.04 Aligned_cols=74 Identities=45% Similarity=0.711 Sum_probs=68.5
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh---HHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
...+||.+|+|+++|+.++||+|||++++.|||||..+++ .|++.|+.|..||++|+||.+|+.||.+|..++.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 3459999999999999999999999999999999987653 4899999999999999999999999999998877
No 37
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.9e-19 Score=138.62 Aligned_cols=68 Identities=51% Similarity=0.840 Sum_probs=65.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
|||+||||+++|+..|||+||++|++++|||.+..+ ++.++|++|.+||++|+|+++|..||..+...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999988 49999999999999999999999999998765
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.5e-19 Score=143.15 Aligned_cols=70 Identities=40% Similarity=0.721 Sum_probs=64.7
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
.|||+||||+++|+.++||+|||++++++|||+++.. .++++|++|++||++|+||.+|..||++|...+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 5999999999999999999999999999999998754 488999999999999999999999999886543
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.76 E-value=1e-18 Score=137.77 Aligned_cols=67 Identities=45% Similarity=0.692 Sum_probs=63.0
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
.|||++|||+++++.++||+|||+|++++|||++++. .+.++|++|++||++|+||.+|..||.+|.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5999999999999999999999999999999998765 489999999999999999999999999763
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-18 Score=130.42 Aligned_cols=71 Identities=49% Similarity=0.810 Sum_probs=66.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCC--ChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~--~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..++|+||||..+|+..+|++||+++++++|||+++ ...++.+.|+.++.||.||+|.++|+.||..|...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 349999999999999999999999999999999994 44569999999999999999999999999999876
No 41
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-18 Score=140.54 Aligned_cols=83 Identities=45% Similarity=0.677 Sum_probs=70.6
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCC------cc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGM------LH 103 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~------~~ 103 (133)
...+.||+||||..+|+..+||++||+|+++||||++|.. +++.++|+.|+.||+||+||..|++||.... ..
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s 84 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNS 84 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCC
Confidence 4557899999999999999999999999999999997654 5699999999999999999999999998644 23
Q ss_pred cccccHHHHH
Q 032817 104 IYDRNIIEYL 113 (133)
Q Consensus 104 ~~~~~~~~~~ 113 (133)
..+..+.|+|
T Consensus 85 ~~~~~~~dlf 94 (508)
T KOG0717|consen 85 DTGVQIEDLF 94 (508)
T ss_pred ccccchHHHH
Confidence 3334556665
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.74 E-value=6.5e-18 Score=102.73 Aligned_cols=58 Identities=55% Similarity=0.912 Sum_probs=53.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHHcCChh
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQVLSDPV 91 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~-~~~a~~~f~~I~~Ay~~L~dp~ 91 (133)
.+||+||||+++++.++||++|+++++.+|||+++. .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999985 4558999999999999999985
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-17 Score=124.88 Aligned_cols=73 Identities=37% Similarity=0.580 Sum_probs=67.9
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
..-|+|+||||+++++.+|||+|||+|++++||||++.+.+.++.|..|.+||+.|+|+..|..|..+|.-.-
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 4569999999999999999999999999999999998877788999999999999999999999999997654
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.72 E-value=1.7e-17 Score=99.16 Aligned_cols=55 Identities=60% Similarity=0.942 Sum_probs=51.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCC
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSD 89 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~d 89 (133)
|||++|||+++++.++||++|+++++.+|||+++....+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998745589999999999999986
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.70 E-value=3.7e-17 Score=139.72 Aligned_cols=86 Identities=42% Similarity=0.665 Sum_probs=72.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccc---cH-
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDR---NI- 109 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~---~~- 109 (133)
+|||+||||+++|+.++||++||+|++++|||+++.. .+.++|+.|++||++|+||.+|..||.+|..+.... .+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~-eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e~gf~f~ 80 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-DAASIFAEINEANDVLSNPKKRANYDKYGHDGVDREDDFDFQ 80 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccccccccchh
Confidence 6999999999999999999999999999999998874 488899999999999999999999999987665422 22
Q ss_pred HHHHHHhcCcc
Q 032817 110 IEYLNRYKGLI 120 (133)
Q Consensus 110 ~~~~~~~~~~~ 120 (133)
.+.+..|++.+
T Consensus 81 ~DIF~sfFeeI 91 (871)
T TIGR03835 81 ADVFNSFFEEI 91 (871)
T ss_pred HHHHHHHhhhh
Confidence 35566665544
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.67 E-value=1.3e-16 Score=114.35 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=63.1
Q ss_pred CCcccccccCCCC--CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc
Q 032817 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD 106 (133)
Q Consensus 34 ~~~Y~iLgl~~~a--s~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~ 106 (133)
..+|+||||+++| |.++||+|||++++++|||++++ .++|++|++||++|+++..|..||.+|......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 4689999999999 99999999999999999999754 579999999999999999999999999776554
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-16 Score=116.16 Aligned_cols=69 Identities=49% Similarity=0.806 Sum_probs=64.5
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhH-HHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~-a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
....+||+||||+++++..+|+++||++++++|||+++.... +.+.|+.|++||++|+|+..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 345699999999999999999999999999999999998764 899999999999999999999999985
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.61 E-value=1.4e-15 Score=111.16 Aligned_cols=66 Identities=32% Similarity=0.532 Sum_probs=58.0
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChh-----HHHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 34 ~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
.|||++|||++. ++..+|+++||++++++|||+.+... .+.+.+..|++||++|+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 389999999986 68899999999999999999976432 2567899999999999999999999864
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.60 E-value=2.5e-15 Score=109.31 Aligned_cols=67 Identities=28% Similarity=0.482 Sum_probs=58.0
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChhH---HHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC---ATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 34 ~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~~---a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
.|||++|||++. ++..+|+++||++++++|||+.....+ +.+.+..|++||++|+||.+|+.|+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 489999999987 789999999999999999999875332 3456789999999999999999997643
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.60 E-value=3.7e-15 Score=109.08 Aligned_cols=68 Identities=26% Similarity=0.410 Sum_probs=60.1
Q ss_pred CCCCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChh-----HHHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
+..|||++|||++. .+..+|+++||++++++|||+....+ .+.+.+..|++||++|++|.+|+.|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46799999999987 67899999999999999999976533 2567899999999999999999999963
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=4.8e-15 Score=108.76 Aligned_cols=66 Identities=27% Similarity=0.404 Sum_probs=57.5
Q ss_pred CCCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChhH-----HHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 33 ~~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~~-----a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
..|||++|||++. ++..+|+++|+++++++|||+.+.... +.+.+..|++||++|++|.+|+.|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999986 689999999999999999999865432 34456899999999999999999985
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.3e-15 Score=119.86 Aligned_cols=73 Identities=30% Similarity=0.466 Sum_probs=66.4
Q ss_pred hcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 30 ~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
..+.+|+|.+|||++++|.++|||.||+++.++||||+..+ .|++.|+.++.||++|+|+++|..||.....+
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-RAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-hHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 34478999999999999999999999999999999999854 59999999999999999999999999865443
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.54 E-value=5.7e-15 Score=117.65 Aligned_cols=70 Identities=46% Similarity=0.782 Sum_probs=64.7
Q ss_pred hhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh---HHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
.....+|||+||||.++|+..+|.||||+++.+||||-..+.+ .|+++|.-|..|-++|+||++|+.||.
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 4467899999999999999999999999999999999987644 489999999999999999999999996
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.4e-14 Score=110.73 Aligned_cols=72 Identities=31% Similarity=0.528 Sum_probs=66.4
Q ss_pred hcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCc
Q 032817 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGML 102 (133)
Q Consensus 30 ~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~ 102 (133)
..+.+|.|++|||++.++..+|.+|||+|++++|||++.+++ +.+.|..|.+||++|.|.+.|+.||-.-+.
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 457789999999999999999999999999999999999887 779999999999999999999999975543
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.2e-14 Score=114.30 Aligned_cols=77 Identities=43% Similarity=0.695 Sum_probs=68.9
Q ss_pred hhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
...++.+||.|||+...++..+|+++||++++.+|||++... .+++.+|+++-+||.+|+||.+|..||.-...+..
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~ 445 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEV 445 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhh
Confidence 445788999999999999999999999999999999998765 67999999999999999999999999986544443
No 56
>PHA02624 large T antigen; Provisional
Probab=99.44 E-value=1.6e-13 Score=115.92 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=68.4
Q ss_pred CCCCcccccccCCCC--CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHh--hhc---CCccc
Q 032817 32 KPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREY--DSK---GMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~a--s~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~Y--D~~---g~~~~ 104 (133)
...++|++|||+++| +.++||+|||++++++|||++++ .++|++|+.||++|+|+.+|..| |.. |....
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v~~~ 84 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEIPTY 84 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcccccccccCCCCC
Confidence 356899999999999 99999999999999999999753 57999999999999999999999 432 22233
Q ss_pred ccccHHHHHHHhcC
Q 032817 105 YDRNIIEYLNRYKG 118 (133)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (133)
...++.+|++.|+.
T Consensus 85 ~~~~w~~ww~~f~~ 98 (647)
T PHA02624 85 GTPEWEQWWEEFNE 98 (647)
T ss_pred ccccHHHHHHHhhh
Confidence 45577777776653
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=8.2e-13 Score=96.69 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=57.9
Q ss_pred CCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChh-----HHHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 34 ~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
.|||++||||+. .+...++++|+++.+.+|||+..... .+.+....||+||.+|+||.+|+.|=..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 489999999876 89999999999999999999976543 3566778999999999999999999763
No 58
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.4e-13 Score=103.17 Aligned_cols=73 Identities=51% Similarity=0.826 Sum_probs=64.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
..++|++|||.+.|+..+|++||+++++++|||+++.. ..+..+|.+|.+||++|+||.+|..||++|.....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 35899999999999999999999999999999997766 23555899999999999999999999999964333
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.39 E-value=5.3e-13 Score=91.55 Aligned_cols=52 Identities=35% Similarity=0.462 Sum_probs=47.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcC
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLS 88 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~ 88 (133)
..++|+||||+++++.++||++||++++++|||+++. .+.+++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999999643 467889999999985
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.37 E-value=5.7e-13 Score=103.53 Aligned_cols=59 Identities=32% Similarity=0.534 Sum_probs=51.9
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC---h----hHHHHHHHHHHHHHHHcCC
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQVLSD 89 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~---~----~~a~~~f~~I~~Ay~~L~d 89 (133)
....++|++|||++++|.++||++||+|++++|||+... + +.++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 344799999999999999999999999999999999642 1 3488999999999999974
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.30 E-value=2.6e-12 Score=104.85 Aligned_cols=74 Identities=32% Similarity=0.564 Sum_probs=66.2
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC-----hhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-----RDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~-----~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
.--|+|+|||+..+++..+||++||+|+.++||||.+. .++.++.+.+|++||..|+|...|..|-.+|.-+..
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 44699999999999999999999999999999999665 456899999999999999999999999998865443
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.9e-12 Score=92.44 Aligned_cols=62 Identities=29% Similarity=0.599 Sum_probs=57.3
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHH
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRRE 95 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~ 95 (133)
.|+|++|.|.|..+.++||+.||+|+..+|||++++. +.|...|.-+.+||..|.|+..|..
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4999999999999999999999999999999999987 6699999999999999999985543
No 63
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-11 Score=93.99 Aligned_cols=95 Identities=23% Similarity=0.449 Sum_probs=70.7
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHH-HcCChhHHHHhhhcCCcccccc----
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-VLSDPVKRREYDSKGMLHIYDR---- 107 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~-~L~dp~~R~~YD~~g~~~~~~~---- 107 (133)
-..+|.||||..+|+.++++.+|.+|++++|||.+.+.. ..+.|.+|.+||. +|+..-.+. +.....+.++.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq~~~~kt--n~~qn~~edee~~~e 122 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQEKFAKT--NARQNIGEDEEDAEE 122 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHHHHHHHh--hhccccccchhhHHH
Confidence 357999999999999999999999999999999988765 6789999999998 666443332 22223333333
Q ss_pred -cHHHHHHHhcCcceeecCcccccc
Q 032817 108 -NIIEYLNRYKGLILTCNGLGMRHS 131 (133)
Q Consensus 108 -~~~~~~~~~~~~~~~~~g~~~~~~ 131 (133)
++..-..+++.+ ++++|+|++|-
T Consensus 123 fdik~kapqhrhy-ls~egig~gtp 146 (342)
T KOG0568|consen 123 FDIKHKAPQHRHY-LSFEGIGFGTP 146 (342)
T ss_pred hhhccCCchhhhh-hcccCcccCCc
Confidence 333334555554 49999999974
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.17 E-value=8.1e-11 Score=84.96 Aligned_cols=56 Identities=30% Similarity=0.446 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCh-----hHHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 45 DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
..+..+|+++||++++++|||+.+.. ..+.+.+..|++||++|+||.+|+.|....
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 46889999999999999999986543 236788999999999999999999999854
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.8e-10 Score=85.37 Aligned_cols=70 Identities=30% Similarity=0.396 Sum_probs=60.2
Q ss_pred cCCCCcccccccCC---CCCHHHHHHHHHHHHHHHCCCCCC--ChhHHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 31 AKPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~---~as~~~Ikkayr~l~~~~HPDk~~--~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
++..|+|.+|||+. .+++.+|.++.++.+.+||||+.. ......+.|+.|++||++|+|+..|..||.-.
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 45689999999974 589999999999999999999962 22236889999999999999999999999743
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.7e-07 Score=83.48 Aligned_cols=52 Identities=38% Similarity=0.658 Sum_probs=46.2
Q ss_pred CCcccccccCC----CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcC
Q 032817 34 KDYYKILEVDY----DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLS 88 (133)
Q Consensus 34 ~~~Y~iLgl~~----~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~ 88 (133)
.+.|+||.++- ..+++.||++|++|+.+|||||+|+ ..+.|.++++||+.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 47799999974 3466999999999999999999987 6799999999999998
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.5e-07 Score=61.05 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=44.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCCh
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDP 90 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp 90 (133)
..-.||||+++++.+.||+++|++....|||+.+.+-. -..|++|+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl----AsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL----ASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH----HHHHHHHHHHHhcc
Confidence 34459999999999999999999999999999998643 34699999998753
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.7e-07 Score=64.44 Aligned_cols=71 Identities=27% Similarity=0.587 Sum_probs=58.9
Q ss_pred hhcCCCCcccccccC--CCCCHHHHHHHHHHHHHHHCCCCCCC-----hhHHHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 29 LLAKPKDYYKILEVD--YDATEEEIRSNYIRLALKWHPDKQKD-----RDCATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~--~~as~~~Ikkayr~l~~~~HPDk~~~-----~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
.+..+.+||.++|.. +..++..++..|.-..++.|||+... ...|.+....+++||.+|.||.+|+.|=..
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677999999864 55688888889999999999999433 345888899999999999999999999653
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.65 E-value=6.4e-05 Score=62.59 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=51.6
Q ss_pred cccCCCCCcccccccccchhhhhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh-------HHHHHHH
Q 032817 6 WVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-------CATSRFQ 78 (133)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~-------~a~~~f~ 78 (133)
|.++.-.|+.+ -...+..+++. ..=++=.+|..-.+.++|||+||+.++.+||||.+... .+++.|.
T Consensus 366 W~~GKE~NIRA-----LLSTLh~VLW~-es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd 439 (453)
T KOG0431|consen 366 WSEGKEGNIRA-----LLSTLHYVLWP-ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFD 439 (453)
T ss_pred hcccccccHHH-----HHHHHhHhhcC-ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHH
Confidence 44554444444 45556666766 55567778888899999999999999999999966542 2445555
Q ss_pred HHHHHHHH
Q 032817 79 EINEAYQV 86 (133)
Q Consensus 79 ~I~~Ay~~ 86 (133)
.+++|+..
T Consensus 440 ~l~eawn~ 447 (453)
T KOG0431|consen 440 ALSEAWNK 447 (453)
T ss_pred HHHHHHHh
Confidence 55555543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00025 Score=51.86 Aligned_cols=67 Identities=27% Similarity=0.386 Sum_probs=53.9
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHHCCCCCCChhH-----HHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 35 DYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 35 ~~Y~iLgl~~~a--s~~~Ikkayr~l~~~~HPDk~~~~~~-----a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
+++.++|+++.+ +.+.++..|+.+.+.+|||+...... +.+.+..++.||.+|.+|..|..|=..-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456667776553 67889999999999999999765432 44578899999999999999999976544
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0005 Score=50.26 Aligned_cols=57 Identities=32% Similarity=0.536 Sum_probs=47.8
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC---h----hHHHHHHHHHHHHHHHc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQVL 87 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~---~----~~a~~~f~~I~~Ay~~L 87 (133)
....+.|.+||+....++.+|+++|+++....|||+-.. + ..+.+++++|++||..+
T Consensus 110 ~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 110 LDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred ccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 334789999999999999999999999999999998432 2 24788899999999754
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.98 E-value=0.017 Score=40.33 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=36.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChh
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPV 91 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~ 91 (133)
....||||++..+.++|.+.|.+|-...+|++++.. -.-..|..|.+.|....
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf----YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF----YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH----HHHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999999988753 33345666666665443
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.27 E-value=1.1 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHH
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLAL 60 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~ 60 (133)
.+.|+.||++++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999887
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.40 E-value=1.5 Score=32.74 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcC
Q 032817 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLS 88 (133)
Q Consensus 43 ~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~ 88 (133)
+++|+.+||++|+.++..+|--| ++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHH
Confidence 47899999999999999999332 456667899998755
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.14 E-value=1.9 Score=29.42 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCChhH----HHHHHHHHHHHHHHcCChh
Q 032817 45 DATEEEIRSNYIRLALKWHPDKQKDRDC----ATSRFQEINEAYQVLSDPV 91 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~HPDk~~~~~~----a~~~f~~I~~Ay~~L~dp~ 91 (133)
..+..+++.+.|.+-+++|||.....++ .++-++.++.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 4567889999999999999998654332 3455667776666666544
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=81.88 E-value=1.8 Score=34.42 Aligned_cols=54 Identities=37% Similarity=0.510 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC----hhHHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 45 DATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~HPDk~~~----~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
.++...|+.+|+..+...||++... .....+.++.|.+||.+|.+...|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3577889999999999999998742 11256789999999999998655444443
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=11 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~ 69 (133)
++|--+++|+.|-++..+|+.+-++.++++.-...+.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 4566778999999999999999999998886555444
No 78
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.77 E-value=27 Score=22.22 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHH----HHHHHHHHcC
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQ----EINEAYQVLS 88 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~----~I~~Ay~~L~ 88 (133)
++|--.+.|+.|.++.++|+.|-.+.+++..=-..+... ..+.|. .|..+-..|.
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~a-n~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAA-NAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchh-hHHHHHHHHHHHHHHHHHHH
Confidence 355566778899999999999999999998765555432 233333 4444444443
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.55 E-value=12 Score=26.12 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.9
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q 032817 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (133)
Q Consensus 37 Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~ 69 (133)
-+||+|++..+.++|.+.|..|-....+.+++.
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 579999999999999999999999988888765
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=50.23 E-value=12 Score=15.84 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHcC
Q 032817 76 RFQEINEAYQVLS 88 (133)
Q Consensus 76 ~f~~I~~Ay~~L~ 88 (133)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3566777777653
No 81
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=43.91 E-value=31 Score=19.90 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 032817 37 YKILEVDYDATEEEIRSNYIRLAL 60 (133)
Q Consensus 37 Y~iLgl~~~as~~~Ikkayr~l~~ 60 (133)
|++=|+.|..+++|.|+.-|+=..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 566789999999999998887443
No 82
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=40.90 E-value=75 Score=21.38 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=38.5
Q ss_pred hhhhcCCCCcccccccCCCC-----CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHH-HHHHHHHH
Q 032817 27 LSLLAKPKDYYKILEVDYDA-----TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQ-EINEAYQV 86 (133)
Q Consensus 27 ~~~~~~~~~~Y~iLgl~~~a-----s~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~-~I~~Ay~~ 86 (133)
...+....+|++.|||+.+. +.=-|=+.|.+.....++.......+....++ .+.+||+.
T Consensus 8 l~~L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~d 73 (105)
T PF03206_consen 8 LKKLSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQD 73 (105)
T ss_pred HHhccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556677999999999764 44556778888888887753333332333333 55667765
No 83
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=38.93 E-value=58 Score=19.47 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHH--CCCCCCChhHHHHHHHHHHHHHHHcCChh
Q 032817 48 EEEIRSNYIRLALKW--HPDKQKDRDCATSRFQEINEAYQVLSDPV 91 (133)
Q Consensus 48 ~~~Ikkayr~l~~~~--HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~ 91 (133)
.+.+.+++.+++..+ ||... -+.+-+....+..||..|.+|.
T Consensus 14 D~Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 14 DKRLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp SHHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-TT
T ss_pred cchHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcCCC
Confidence 455777888886644 55542 3345667778889999998873
No 84
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=33.87 E-value=61 Score=16.48 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHCC
Q 032817 47 TEEEIRSNYIRLALKWHP 64 (133)
Q Consensus 47 s~~~Ikkayr~l~~~~HP 64 (133)
..++.|.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 457788899999999983
No 85
>PF14027 DUF4243: Protein of unknown function (DUF4243)
Probab=33.65 E-value=13 Score=29.58 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccccHHHHHHHh
Q 032817 44 YDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRNIIEYLNRY 116 (133)
Q Consensus 44 ~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~~~~~~~~~~ 116 (133)
-+|+.++|++.|..-+...-|-...++. .......-..--+.|+++..-..|-.+-..++.+.++.+.++.|
T Consensus 16 LGA~~~~l~~~yd~~~~~~~p~~~~~~~-~~~~~i~~~~w~~~LG~~~~y~~yl~fF~~ei~~~G~~~vl~~y 87 (329)
T PF14027_consen 16 LGASPEQLQAAYDRYAKYQRPWHPADPP-KSPELITEENWRDHLGDREYYRAYLDFFEDEIERKGWKAVLEEY 87 (329)
T ss_pred cCCCHHHHHHHHHhCccccCCCCCCCcc-cccccCCHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4789999999997766655544321110 00000001234567888888888888877888888888888888
No 86
>COG2879 Uncharacterized small protein [Function unknown]
Probab=32.37 E-value=1.2e+02 Score=18.68 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCCCCChhHHHHHHHHH
Q 032817 54 NYIRLALKWHPDKQKDRDCATSRFQEI 80 (133)
Q Consensus 54 ayr~l~~~~HPDk~~~~~~a~~~f~~I 80 (133)
.|..-.+..|||+.+-.. .+.|..-
T Consensus 27 nYVehmr~~hPd~p~mT~--~EFfrec 51 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTY--EEFFREC 51 (65)
T ss_pred HHHHHHHHhCcCCCcccH--HHHHHHH
Confidence 577778899999987532 4444433
No 87
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=30.06 E-value=52 Score=21.75 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=18.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLAL 60 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~~ 60 (133)
+|-|.+.|+..+||+|..++--
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 5778999999999999988753
No 88
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=28.57 E-value=1.7e+02 Score=18.91 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=29.0
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 41 EVDYDA-TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 41 gl~~~a-s~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
|++|+. ...+|-+.+..++..+++. ..+.+..+...| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 445543 3455666666766666661 345777777777 67888888888
No 89
>CHL00030 rpl23 ribosomal protein L23
Probab=28.43 E-value=59 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
++-|++.|+..+||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999998764
No 90
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=28.24 E-value=1.2e+02 Score=17.15 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.+.++...+.-||+.. ..+....+.+.|..|++.++....+
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666777788833 5678889999999999765544443
No 91
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=28.06 E-value=1.4e+02 Score=17.86 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+..|...+.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344556666788753 4678888999999999776655444
No 92
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.76 E-value=1.3e+02 Score=21.04 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCChhHHHHHHHHHHHHHHHcCChhHHHHh
Q 032817 45 DATEEEIRSNYIRLALKWH-PDKQKDRDCATSRFQEINEAYQVLSDPVKRREY 96 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~H-PDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~Y 96 (133)
..-..++.++|..+.+..+ |++. ...+.-+.||-...|...-..+
T Consensus 47 ~~aDa~LN~AY~~ll~~l~~~~~~-------~aL~kaQRAWi~fRDadC~~~~ 92 (127)
T COG3755 47 QAADAELNKAYKALLKRLQDSPRT-------KALQKAQRAWIAFRDADCALIK 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHHHHHhhHhHHHHh
Confidence 3456789999999999887 5432 2577788899888888776665
No 93
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.13 E-value=1.5e+02 Score=16.89 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 55 YIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 55 yr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 15 ~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 15 QRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4555566788732 5788889999999999765554444
No 94
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=23.95 E-value=11 Score=22.92 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=18.7
Q ss_pred CCcccccccCCCCCHHHH-HHHHHHHHHHHCCCC
Q 032817 34 KDYYKILEVDYDATEEEI-RSNYIRLALKWHPDK 66 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~I-kkayr~l~~~~HPDk 66 (133)
.+++++||+++ +++ ......+....|||-
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46788888765 455 455666778899983
No 95
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=23.92 E-value=83 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC
Q 032817 43 DYDATEEEIRSNYIRLALKWHPDKQ 67 (133)
Q Consensus 43 ~~~as~~~Ikkayr~l~~~~HPDk~ 67 (133)
+++.+.+++-+|-+-.-..+|||.+
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCC
Confidence 3456999999999999999999984
No 96
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=23.63 E-value=98 Score=20.45 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCC
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk 66 (133)
+..+|.||-++..++..+|-+.-...+++-+||-
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 4589999999999887776655444455556665
No 97
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=23.55 E-value=1.3e+02 Score=24.37 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 54 NYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 54 ayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
..|+...+--||.. ..|+.++|-+-|+.|++.++|-.+|.
T Consensus 76 ~~RRkma~qnP~mH-----NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 76 GQRRKLAKQNPKMH-----NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHhCcchh-----hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 45665556668775 46899999999999999999998875
No 98
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.46 E-value=85 Score=19.82 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
.+-|++.++..+||+|..++-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999998873
No 99
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=23.00 E-value=68 Score=18.18 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLALK 61 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~~~ 61 (133)
|=|||++++.++|++.|.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 34789999999999998875443
No 100
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.67 E-value=1.7e+02 Score=23.40 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=37.6
Q ss_pred CCCcccccccCC-CCCHHHHHHHHHHHHHHH-------CCCCCCC---hhHHHHHHHHHHHHHHHcCCh
Q 032817 33 PKDYYKILEVDY-DATEEEIRSNYIRLALKW-------HPDKQKD---RDCATSRFQEINEAYQVLSDP 90 (133)
Q Consensus 33 ~~~~Y~iLgl~~-~as~~~Ikkayr~l~~~~-------HPDk~~~---~~~a~~~f~~I~~Ay~~L~dp 90 (133)
+.++++-||++. ..+.+++.+-.+.+..+. ++|..+. +..-.+.++.+.+||+.|.+.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 346777899987 678888877665554443 3333211 111367888889999888753
No 101
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=21.75 E-value=1.8e+02 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHH
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRRE 95 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~ 95 (133)
.+|..-+...+||+.++...+....|-++ ..|.-|..|..
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~L----KeLAspg~Kd~ 83 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFEL----KELASPGYKDR 83 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHH----HHHC-HHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHH----HHhcCchhhhc
Confidence 46788888899999988766555555544 45777877776
No 102
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=21.27 E-value=97 Score=20.12 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
.|-|++.++..+||++..++-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 467899999999999998864
No 103
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.28 E-value=48 Score=20.74 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHCCC
Q 032817 40 LEVDYDATEEEIRSNYIRLALKWHPD 65 (133)
Q Consensus 40 Lgl~~~as~~~Ikkayr~l~~~~HPD 65 (133)
+.|..+.+.+++|+.|.++.....|-
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 45677889999999999888766553
Done!