Query 032817
Match_columns 133
No_of_seqs 167 out of 1108
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 3.7E-23 1.3E-27 132.1 7.1 73 32-104 5-77 (79)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 7.3E-23 2.5E-27 130.2 7.7 71 34-105 3-73 (77)
3 2och_A Hypothetical protein DN 99.9 4.7E-23 1.6E-27 129.9 6.6 70 29-101 3-72 (73)
4 2ctp_A DNAJ homolog subfamily 99.9 1.1E-22 3.7E-27 129.7 7.1 73 31-104 4-76 (78)
5 2ej7_A HCG3 gene; HCG3 protein 99.9 1.5E-22 5E-27 130.2 7.1 73 32-104 7-80 (82)
6 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.7E-22 9.2E-27 130.8 7.3 72 31-103 14-85 (88)
7 1bq0_A DNAJ, HSP40; chaperone, 99.9 8E-23 2.7E-27 136.8 4.4 74 33-106 2-75 (103)
8 2ctr_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 130.1 6.9 70 32-102 5-74 (88)
9 2ctq_A DNAJ homolog subfamily 99.9 3.9E-22 1.3E-26 135.4 6.8 82 31-113 17-98 (112)
10 2ctw_A DNAJ homolog subfamily 99.9 6.8E-22 2.3E-26 133.7 7.6 74 31-104 14-87 (109)
11 2yua_A Williams-beuren syndrom 99.9 6.5E-22 2.2E-26 131.6 6.8 70 31-100 14-83 (99)
12 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 4.1E-22 1.4E-26 134.5 5.3 88 28-117 9-100 (109)
13 2dmx_A DNAJ homolog subfamily 99.9 8.7E-22 3E-26 129.2 6.4 74 32-105 7-81 (92)
14 2o37_A Protein SIS1; HSP40, J- 99.8 9.9E-22 3.4E-26 129.1 6.2 73 29-104 3-75 (92)
15 2lgw_A DNAJ homolog subfamily 99.8 8.3E-22 2.8E-26 131.2 5.6 72 34-105 2-74 (99)
16 1wjz_A 1700030A21RIK protein; 99.8 1E-21 3.5E-26 129.1 4.9 71 31-101 13-89 (94)
17 3apq_A DNAJ homolog subfamily 99.8 8.5E-21 2.9E-25 139.5 6.7 72 34-105 2-73 (210)
18 2ys8_A RAB-related GTP-binding 99.8 1.5E-20 5.3E-25 123.0 5.5 74 21-95 14-87 (90)
19 2l6l_A DNAJ homolog subfamily 99.8 4.1E-20 1.4E-24 131.7 5.5 69 32-100 8-82 (155)
20 3bvo_A CO-chaperone protein HS 99.8 2.8E-19 9.4E-24 133.1 6.5 92 3-98 14-114 (207)
21 3hho_A CO-chaperone protein HS 99.8 2.5E-19 8.6E-24 130.1 5.7 68 32-99 2-76 (174)
22 3lz8_A Putative chaperone DNAJ 99.8 6.7E-20 2.3E-24 144.7 0.0 73 27-100 21-93 (329)
23 1gh6_A Large T antigen; tumor 99.7 4.9E-20 1.7E-24 125.6 -1.8 81 33-117 7-96 (114)
24 1fpo_A HSC20, chaperone protei 99.7 9E-19 3.1E-23 126.9 4.6 66 35-100 2-74 (171)
25 2pf4_E Small T antigen; PP2A, 99.7 1.7E-19 5.7E-24 130.9 -0.9 65 33-101 10-76 (174)
26 1faf_A Large T antigen; J doma 99.7 1.5E-18 5.2E-23 111.0 3.7 64 33-101 10-75 (79)
27 1n4c_A Auxilin; four helix bun 99.7 1.3E-18 4.3E-23 127.1 3.2 70 27-96 110-182 (182)
28 1iur_A KIAA0730 protein; DNAJ 99.7 2.2E-18 7.6E-23 112.4 2.3 61 33-93 15-76 (88)
29 2qwo_B Putative tyrosine-prote 99.7 7.8E-18 2.7E-22 110.6 3.2 65 25-89 24-91 (92)
30 3ag7_A Putative uncharacterize 99.7 1.4E-17 4.7E-22 112.1 3.9 63 28-91 35-104 (106)
31 3uo3_A J-type CO-chaperone JAC 99.7 9.4E-18 3.2E-22 122.5 3.0 67 31-100 8-81 (181)
32 3apo_A DNAJ homolog subfamily 99.7 4.6E-18 1.6E-22 145.4 0.8 77 30-106 17-93 (780)
33 2guz_A Mitochondrial import in 99.6 5.2E-17 1.8E-21 101.8 2.6 56 34-93 14-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.2 2.8E-11 9.7E-16 94.3 5.4 67 32-98 380-449 (450)
35 2guz_B Mitochondrial import in 99.0 3.1E-10 1.1E-14 69.7 4.4 52 35-90 5-59 (65)
36 2pzi_A Probable serine/threoni 92.1 0.12 4.2E-06 43.2 3.9 50 29-86 624-675 (681)
37 2b7e_A PRE-mRNA processing pro 41.3 51 0.0017 19.0 4.9 48 49-99 3-55 (59)
38 2cqn_A Formin-binding protein 40.2 54 0.0018 19.7 4.4 55 43-98 3-60 (77)
39 1ug2_A 2610100B20RIK gene prod 37.5 20 0.00068 22.8 2.1 22 45-66 67-88 (95)
40 4a3n_A Transcription factor SO 35.3 61 0.0021 18.2 4.7 40 52-97 14-53 (71)
41 1qqr_A Streptokinase domain B; 31.0 28 0.00096 23.6 2.2 32 35-66 33-64 (138)
42 2lxi_A RNA-binding protein 10; 28.3 45 0.0016 19.8 2.7 20 40-59 7-26 (91)
43 1wgf_A Upstream binding factor 26.7 1.1E+02 0.0037 18.4 4.7 40 53-97 33-72 (90)
44 2cs1_A PMS1 protein homolog 1; 26.2 1.1E+02 0.0038 18.4 4.5 41 52-97 19-59 (92)
45 1i11_A Transcription factor SO 26.2 1E+02 0.0035 17.9 4.4 40 53-97 17-56 (81)
46 2crj_A SWI/SNF-related matrix- 25.4 1.2E+02 0.004 18.3 5.5 40 53-97 20-59 (92)
47 3f27_D Transcription factor SO 25.2 1.1E+02 0.0037 17.8 5.3 40 52-97 18-57 (83)
48 3cxb_A Protein SIFA; SIFA, SKI 24.9 1E+02 0.0035 23.8 4.5 41 52-96 44-84 (336)
49 1vq8_S 50S ribosomal protein L 24.9 50 0.0017 20.4 2.4 21 39-59 26-46 (85)
50 2lr8_A CAsp8-associated protei 30.6 16 0.00053 22.0 0.0 32 35-66 37-68 (70)
51 3nm9_A HMG-D, high mobility gr 24.2 1.1E+02 0.0037 17.5 5.0 39 52-98 15-53 (73)
52 2ket_A Cathelicidin-6; antimic 23.3 70 0.0024 15.0 2.8 18 48-65 3-20 (27)
53 2zjr_Q 50S ribosomal protein L 22.2 58 0.002 20.5 2.4 21 39-59 26-46 (95)
54 4euw_A Transcription factor SO 22.1 1.5E+02 0.005 18.5 4.4 51 30-97 30-80 (106)
55 3r8s_T 50S ribosomal protein L 22.0 60 0.0021 20.3 2.4 21 39-59 31-51 (93)
56 2e6o_A HMG box-containing prot 21.7 1.4E+02 0.0046 17.7 4.9 40 52-97 29-68 (87)
57 3j21_T 50S ribosomal protein L 21.5 64 0.0022 19.9 2.4 21 39-59 27-47 (86)
58 1iqt_A AUF1, heterogeneous nuc 21.5 78 0.0027 17.5 2.7 19 40-58 5-23 (75)
59 1uzc_A Hypothetical protein FL 21.2 1.4E+02 0.0047 17.6 4.7 51 45-98 11-64 (71)
60 2d7l_A WD repeat and HMG-box D 20.6 1.4E+02 0.005 17.7 4.0 43 52-98 17-59 (81)
61 2co9_A Thymus high mobility gr 20.4 1.5E+02 0.0053 18.1 4.2 40 53-97 30-69 (102)
62 3tve_T 50S ribosomal protein L 20.2 70 0.0024 20.0 2.4 21 39-59 25-45 (92)
63 1gt0_D Transcription factor SO 20.1 1.3E+02 0.0043 17.4 3.6 39 53-97 15-53 (80)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.7e-23 Score=132.10 Aligned_cols=73 Identities=45% Similarity=0.744 Sum_probs=67.4
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
...|||+||||+++++.++||++||++++++|||+++..+.+.+.|+.|++||++|+||.+|..||.+|....
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 4579999999999999999999999999999999998655689999999999999999999999999986543
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=7.3e-23 Score=130.19 Aligned_cols=71 Identities=48% Similarity=0.780 Sum_probs=66.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
.|||+||||+++++.++||++|+++++++|||+++.+. +.+.|+.|++||++|+||.+|..||.+|.....
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 58999999999999999999999999999999998754 889999999999999999999999999876654
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=4.7e-23 Score=129.89 Aligned_cols=70 Identities=43% Similarity=0.782 Sum_probs=62.8
Q ss_pred hhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
.+....+||+||||+++++.++||++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..|.
T Consensus 3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 456778999999999999999999999999999999998763 5899999999999999999999999885
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=129.69 Aligned_cols=73 Identities=45% Similarity=0.742 Sum_probs=67.1
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
....|||+||||+++++.++||++|+++++++|||+++.+. +.+.|+.|++||++|+||.+|..||..|....
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-ATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHH-HHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 35679999999999999999999999999999999998754 89999999999999999999999999987643
No 5
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=130.16 Aligned_cols=73 Identities=45% Similarity=0.747 Sum_probs=67.0
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
...+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||.+|...+
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 457999999999999999999999999999999998764 3588999999999999999999999999987654
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.7e-22 Score=130.75 Aligned_cols=72 Identities=42% Similarity=0.689 Sum_probs=66.7
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
....|||+||||+++++.++||++||++++++|||+++.+. +.+.|+.|++||++|+||.+|..||.+|...
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT-HHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh-HHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 35679999999999999999999999999999999998754 8999999999999999999999999998654
No 7
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=8e-23 Score=136.83 Aligned_cols=74 Identities=46% Similarity=0.759 Sum_probs=68.3
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD 106 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~ 106 (133)
..+||+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||..|......
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 46999999999999999999999999999999999865568999999999999999999999999999776553
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=130.13 Aligned_cols=70 Identities=46% Similarity=0.797 Sum_probs=65.1
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGML 102 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~ 102 (133)
...+||+||||+++++.++||++||++++++|||+++.+. +.+.|+.|++||++|+||.+|..||..|..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHH-HHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChH-HHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 4579999999999999999999999999999999998654 899999999999999999999999998754
No 9
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=135.42 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=72.4
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccccccHH
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYDRNII 110 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~~~~~ 110 (133)
....|||+||||+++++.++||++||++++++|||+++..+.+.+.|++|++||++|+||.+|..||..|..... ..+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~~~ 95 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS-MPFQ 95 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS-SCHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC-CCHH
Confidence 456899999999999999999999999999999999986556999999999999999999999999999876654 4455
Q ss_pred HHH
Q 032817 111 EYL 113 (133)
Q Consensus 111 ~~~ 113 (133)
.|.
T Consensus 96 ~w~ 98 (112)
T 2ctq_A 96 QWE 98 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=6.8e-22 Score=133.67 Aligned_cols=74 Identities=41% Similarity=0.704 Sum_probs=68.2
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
....++|+||||+++++.++||++||+|++++|||+++..+.+.+.|+.|++||++|+||.+|..||.+|...+
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 34579999999999999999999999999999999998766689999999999999999999999999886653
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=131.58 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=65.0
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
....+||+||||+++++.++||++||+|++++|||+++..+.+.+.|+.|++||++|+||.+|..||...
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 3567999999999999999999999999999999999866668999999999999999999999999854
No 12
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.85 E-value=4.1e-22 Score=134.53 Aligned_cols=88 Identities=28% Similarity=0.452 Sum_probs=74.0
Q ss_pred hhhcCCCCcccccccCCCC-CHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcc
Q 032817 28 SLLAKPKDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQVLSDPVKRREYDSKGMLH 103 (133)
Q Consensus 28 ~~~~~~~~~Y~iLgl~~~a-s~~~Ikkayr~l~~~~HPDk~~~---~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~ 103 (133)
.......+||+||||++++ +.++||++||++++++|||+++. .+.+.+.|++|++||++|+||.+|..||..+...
T Consensus 9 ~~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 9 ELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TSTTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred HHHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 3455678999999999999 99999999999999999999886 3458899999999999999999999999988654
Q ss_pred cccccHHHHHHHhc
Q 032817 104 IYDRNIIEYLNRYK 117 (133)
Q Consensus 104 ~~~~~~~~~~~~~~ 117 (133)
.. .+.+++.-|.
T Consensus 89 ~~--~~~~~~~~~~ 100 (109)
T 2qsa_A 89 DQ--RFYNYYQYYR 100 (109)
T ss_dssp TC--HHHHHHHHHH
T ss_pred hH--HHHHHHHHHH
Confidence 32 3455554443
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.7e-22 Score=129.18 Aligned_cols=74 Identities=42% Similarity=0.720 Sum_probs=67.1
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
...+||+||||+++++.++||++||+|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..|.....
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 456999999999999999999999999999999998764 45889999999999999999999999998876543
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.9e-22 Score=129.08 Aligned_cols=73 Identities=40% Similarity=0.710 Sum_probs=65.3
Q ss_pred hhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc
Q 032817 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI 104 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~ 104 (133)
.+....+||+||||+++++.++||++||++++++|||+++.. .+.|++|++||++|+||.+|..||.++...+
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 445678999999999999999999999999999999999764 4699999999999999999999999885443
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-22 Score=131.25 Aligned_cols=72 Identities=44% Similarity=0.778 Sum_probs=64.4
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
.|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..|.....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4899999999999999999999999999999998764 45889999999999999999999999998866554
No 16
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=1e-21 Score=129.08 Aligned_cols=71 Identities=31% Similarity=0.609 Sum_probs=64.8
Q ss_pred cCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh------hHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 31 ~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~------~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
....+||+||||+++++.++||++||++++++|||+++.. ..+.+.|++|++||++|+||.+|..||....
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4568999999999999999999999999999999998741 4588999999999999999999999998764
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=8.5e-21 Score=139.52 Aligned_cols=72 Identities=39% Similarity=0.636 Sum_probs=67.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCcccc
Q 032817 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIY 105 (133)
Q Consensus 34 ~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~ 105 (133)
.|||+||||+++++.++||+|||++++++|||+++..+++.+.|+.|++||++|+||.+|..||.+|.....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 589999999999999999999999999999999976666999999999999999999999999999976654
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=122.97 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=64.8
Q ss_pred ccchhhhhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHH
Q 032817 21 HVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRRE 95 (133)
Q Consensus 21 ~~~~~~~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~ 95 (133)
...++....+....|||+||||+++++.++||++||+|++++|||+++.+. +.+.|++|++||++|+||.+|..
T Consensus 14 ~~~~~~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 14 KEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHHHHHHHHHHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCcccccC
Confidence 344555555667799999999999999999999999999999999998754 88999999999999999988764
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=131.66 Aligned_cols=69 Identities=35% Similarity=0.636 Sum_probs=63.0
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh------HHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD------CATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~------~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
...|||+||||+++++.++||++||++++++|||+++... .+.+.|+.|++||++|+||.+|+.||..+
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4579999999999999999999999999999999987642 36799999999999999999999999754
No 20
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=133.13 Aligned_cols=92 Identities=18% Similarity=0.339 Sum_probs=72.7
Q ss_pred ccccccCCCCCc-ccccccccchhhh-hhhcCCCCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChh-----HH
Q 032817 3 WDEWVDCNNNDE-QTQQDSHVNFDFL-SLLAKPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CA 73 (133)
Q Consensus 3 w~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~-----~a 73 (133)
|| |+.... ......+|..|-. .+.....|||+||||++. ++.++||++||+|++++|||+++... .+
T Consensus 14 w~----C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a 89 (207)
T 3bvo_A 14 WN----CGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFS 89 (207)
T ss_dssp SS----SCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHH
T ss_pred CC----CCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH
Confidence 77 765421 2234466655543 344456899999999986 79999999999999999999987532 36
Q ss_pred HHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 74 TSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 74 ~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
.+.|+.|++||++|+||.+|+.||.
T Consensus 90 ~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 90 EKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 7789999999999999999999985
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.77 E-value=2.5e-19 Score=130.11 Aligned_cols=68 Identities=26% Similarity=0.497 Sum_probs=60.9
Q ss_pred CCCCcccccccCCCCC--HHHHHHHHHHHHHHHCCCCCCChhH-----HHHHHHHHHHHHHHcCChhHHHHhhhc
Q 032817 32 KPKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQVLSDPVKRREYDSK 99 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as--~~~Ikkayr~l~~~~HPDk~~~~~~-----a~~~f~~I~~Ay~~L~dp~~R~~YD~~ 99 (133)
...|||+||||+++++ .++||++||++++++|||++++... +.+.|..|++||++|+||.+|..||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3579999999999987 9999999999999999999876542 678999999999999999999999974
No 22
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.75 E-value=6.7e-20 Score=144.74 Aligned_cols=73 Identities=40% Similarity=0.604 Sum_probs=0.0
Q ss_pred hhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 27 ~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
.+......|||+||||+++|+.++||+|||+|++++|||+++++ .|.++|++|++||++|+||.+|..||+++
T Consensus 21 ~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 21 QSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 33334557999999999999999999999999999999998865 48999999999999999999999999974
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=4.9e-20 Score=125.55 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=68.0
Q ss_pred CCCcccccccCCCCCH--HHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccc------
Q 032817 33 PKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHI------ 104 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~--~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~------ 104 (133)
..++|+||||+++++. ++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||.+|....
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~~~~~~ 82 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPT 82 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCCCCCCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcccccccccCCC
Confidence 3589999999999998 999999999999999999876 4789999999999999999999998764322
Q ss_pred -ccccHHHHHHHhc
Q 032817 105 -YDRNIIEYLNRYK 117 (133)
Q Consensus 105 -~~~~~~~~~~~~~ 117 (133)
....+.+|++.+.
T Consensus 83 ~g~p~w~~w~~~~~ 96 (114)
T 1gh6_A 83 YGTDEWEQWWNAFN 96 (114)
T ss_dssp CSSSCHHHHHHHHH
T ss_pred CCCchHHHHHhccc
Confidence 1236677765543
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.74 E-value=9e-19 Score=126.88 Aligned_cols=66 Identities=26% Similarity=0.438 Sum_probs=60.4
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHHCCCCCCChh-----HHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 35 DYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 35 ~~Y~iLgl~~~a--s~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
|||+||||++++ +.++||++||++++++|||+++... .+.+.|..|++||++|+||.+|..||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 9999999999999999999987643 35689999999999999999999999853
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.73 E-value=1.7e-19 Score=130.93 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=58.1
Q ss_pred CCCcccccccCCCCC--HHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 33 PKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as--~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
..++|+||||+++|+ .++||+|||++++++|||++++ .+.|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 368999999999998 6999999999999999999876 3789999999999999999999999995
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=1.5e-18 Score=110.97 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCCcccccccCCC--CCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCC
Q 032817 33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGM 101 (133)
Q Consensus 33 ~~~~Y~iLgl~~~--as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~ 101 (133)
..++|+||||+++ ++.++||++||++++++|||++++ .+.|++|++||++|+++.+|..+ .+|.
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g~ 75 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLGG 75 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCSS
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcCC
Confidence 3589999999999 999999999999999999999865 57899999999999999999884 4554
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.72 E-value=1.3e-18 Score=127.06 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=62.1
Q ss_pred hhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhH---HHHHHHHHHHHHHHcCChhHHHHh
Q 032817 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC---ATSRFQEINEAYQVLSDPVKRREY 96 (133)
Q Consensus 27 ~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~---a~~~f~~I~~Ay~~L~dp~~R~~Y 96 (133)
..+++...++|++|||++.++.++||++||++++++|||+++.... +.+.|+.|++||++|+||.+|..|
T Consensus 110 ~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 110 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp GGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3455555799999999999999999999999999999999875432 789999999999999999999876
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=2.2e-18 Score=112.37 Aligned_cols=61 Identities=28% Similarity=0.440 Sum_probs=56.0
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHHcCChhHH
Q 032817 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQVLSDPVKR 93 (133)
Q Consensus 33 ~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~I~~Ay~~L~dp~~R 93 (133)
..++|+||||+++++.++||++||+|++++|||+++.. +.+.+.|+.|++||++|++...|
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 35899999999999999999999999999999998874 35899999999999999998776
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.69 E-value=7.8e-18 Score=110.57 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=55.5
Q ss_pred hhhhhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChh---HHHHHHHHHHHHHHHcCC
Q 032817 25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQVLSD 89 (133)
Q Consensus 25 ~~~~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~I~~Ay~~L~d 89 (133)
++..+++...++|++|||++.++.++||+|||++++++|||++++.+ .|.+.|+.|++||++|.+
T Consensus 24 ~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 24 TMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp HGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 34445554468999999999999999999999999999999987543 388999999999999964
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.4e-17 Score=112.07 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=54.9
Q ss_pred hhhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh-------hHHHHHHHHHHHHHHHcCChh
Q 032817 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQVLSDPV 91 (133)
Q Consensus 28 ~~~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~-------~~a~~~f~~I~~Ay~~L~dp~ 91 (133)
..++...+||+|||++. |+.++||+|||++++++|||+++.+ ..|.++|+.|++||++|+|+.
T Consensus 35 ~~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 35 YILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp GTSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 45566789999999996 9999999999999999999997531 147899999999999999985
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.68 E-value=9.4e-18 Score=122.53 Aligned_cols=67 Identities=24% Similarity=0.525 Sum_probs=60.4
Q ss_pred cCCCCccccc------ccCC-CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcC
Q 032817 31 AKPKDYYKIL------EVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 100 (133)
Q Consensus 31 ~~~~~~Y~iL------gl~~-~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g 100 (133)
....|||+|| |+++ +++.++||++||+|++++|||+++. +.+.|..|++||++|+||.+|..||...
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4567999999 4664 8999999999999999999999986 6789999999999999999999999843
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.67 E-value=4.6e-18 Score=145.37 Aligned_cols=77 Identities=38% Similarity=0.593 Sum_probs=40.9
Q ss_pred hcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhhcCCccccc
Q 032817 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKGMLHIYD 106 (133)
Q Consensus 30 ~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~~g~~~~~~ 106 (133)
.....|||+||||+++|+.++||+|||++++++|||+++..+.+.+.|++|++||++|+||.+|..||++|..+...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence 34567999999999999999999999999999999999766668999999999999999999999999999776654
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.2e-17 Score=101.76 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=50.6
Q ss_pred CCcccccccCC-CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHH
Q 032817 34 KDYYKILEVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKR 93 (133)
Q Consensus 34 ~~~Y~iLgl~~-~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R 93 (133)
.++|+||||++ +++.++||++||+|++++|||+++. .+.|++|++||++|+++..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 58999999999 7999999999999999999999754 46999999999999987654
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.15 E-value=2.8e-11 Score=94.34 Aligned_cols=67 Identities=43% Similarity=0.784 Sum_probs=57.2
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCCh---hHHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 32 ~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~---~~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
...++|.+||+...++.++|+++|+++++.+|||+.+.+ ..+.+.|+.|.+||++|+||++|..||.
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 345999999999999999999999999999999998765 3588999999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.1e-10 Score=69.66 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=44.9
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCCh
Q 032817 35 DYYKILEVDYD---ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDP 90 (133)
Q Consensus 35 ~~Y~iLgl~~~---as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp 90 (133)
..|.||||++. ++.++|+++||+|....|||+++. ......|++|.+.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence 46889999999 999999999999999999999875 45667789999888643
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.07 E-value=0.12 Score=43.25 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.8
Q ss_pred hhcCCCCcccccccCCCCCH--HHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHH
Q 032817 29 LLAKPKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQV 86 (133)
Q Consensus 29 ~~~~~~~~Y~iLgl~~~as~--~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~ 86 (133)
.....+++|.+||++.+... ..|+++||++++..+++ .+++..|..|..+
T Consensus 624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 44567789999999777655 77999999999965443 4678888888765
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.32 E-value=51 Score=19.02 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCChhHHHHHHHHH---HHHHHHcCC-hh-HHHHhhhc
Q 032817 49 EEIRSNYIRLALKWHPDKQKDRDCATSRFQEI---NEAYQVLSD-PV-KRREYDSK 99 (133)
Q Consensus 49 ~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I---~~Ay~~L~d-p~-~R~~YD~~ 99 (133)
++..++|.+|.+...-|..-. -++....| ..-|.+|.| |. ++..|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~ws---weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS---FSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC---HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc---HHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 567889999999887666554 44555556 458999997 65 55677654
No 38
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.20 E-value=54 Score=19.72 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCh--hHHHHHHHHHHHHHHHcCCh-hHHHHhhh
Q 032817 43 DYDATEEEIRSNYIRLALKWHPDKQKDR--DCATSRFQEINEAYQVLSDP-VKRREYDS 98 (133)
Q Consensus 43 ~~~as~~~Ikkayr~l~~~~HPDk~~~~--~~a~~~f~~I~~Ay~~L~dp-~~R~~YD~ 98 (133)
+...-...++.+|+.+.+...|...... +.+...|..-. +|..+.+. .++.+|+.
T Consensus 3 ~~~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFee 60 (77)
T 2cqn_A 3 SGSSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKD 60 (77)
T ss_dssp SCCCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHH
Confidence 3345678899999999998877665443 23455555444 78888775 45555553
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=37.50 E-value=20 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC
Q 032817 45 DATEEEIRSNYIRLALKWHPDK 66 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~HPDk 66 (133)
+-++.+|+.+|++|++++|--.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999998654
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=35.26 E-value=61 Score=18.23 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~e-K~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAE-KRPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 4556666777788764 4678888999999998655 44443
No 41
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=30.97 E-value=28 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=27.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCC
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk 66 (133)
-++..|-|....+.++++++-..+..+.||+=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34677778888999999999999999999984
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=28.34 E-value=45 Score=19.84 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.6
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 032817 40 LEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 40 Lgl~~~as~~~Ikkayr~l~ 59 (133)
=|||++++.++|++.|.+.-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 47999999999999998864
No 43
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.74 E-value=1.1e+02 Score=18.38 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 33 ~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 72 (90)
T 1wgf_A 33 EEKRRQLQEERPELS-----ESELTRLLARMWNDLSEKKKAKYKA 72 (90)
T ss_dssp HHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455666677788843 5688889999999998665444433
No 44
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.23 E-value=1.1e+02 Score=18.36 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-----LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHHCCSSC-----HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666677788864 5688889999999998665544444
No 45
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.20 E-value=1e+02 Score=17.93 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 17 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 17 KDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 445566666677753 5678889999999999776555444
No 46
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=25.35 E-value=1.2e+02 Score=18.28 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 20 NERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666677788854 5678889999999999776554444
No 47
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=25.16 E-value=1.1e+02 Score=17.84 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~e-K~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAE-KRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 4566777778899865 4678888999999998554 44443
No 48
>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A
Probab=24.93 E-value=1e+02 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREY 96 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~Y 96 (133)
-+|..-+...+||+.++.+++....|.++. .|.-|.-|..+
T Consensus 44 aEAl~CI~eLcHp~~~~TrE~v~~~F~~LK----~LA~PgykdnF 84 (336)
T 3cxb_A 44 AKADRCLHEMLFAERAPTRERLTEIFFELK----ELACASQRDRF 84 (336)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHHHH----HHBCHHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----HhcCchhhhhe
Confidence 357888889999999888877777776665 45566665543
No 49
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.86 E-value=50 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.6
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
+|-|++.|+..+||+|..++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999998864
No 50
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=30.62 E-value=16 Score=22.01 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=20.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHCCCC
Q 032817 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (133)
Q Consensus 35 ~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk 66 (133)
.-|..|--.-+-++++|+.+|++|++++|-.+
T Consensus 37 ~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 37 KTFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 33444332335678888888888888887654
No 51
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=24.21 E-value=1.1e+02 Score=17.47 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-----VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-----HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 3455666777888864 46788889999999987 666653
No 52
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=23.27 E-value=70 Score=15.02 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHCCC
Q 032817 48 EEEIRSNYIRLALKWHPD 65 (133)
Q Consensus 48 ~~~Ikkayr~l~~~~HPD 65 (133)
.+..++.|+++-++..|-
T Consensus 3 fkrfrkkfkklfkklspv 20 (27)
T 2ket_A 3 FKRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 345678888888888774
No 53
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.24 E-value=58 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=19.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
+|-|++.|+..+||+|..++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 788999999999999998874
No 54
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=22.10 E-value=1.5e+02 Score=18.47 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=35.3
Q ss_pred hcCCCCcccccccCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 30 ~~~~~~~Y~iLgl~~~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
...+.+.|-++ .+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 30 pKRP~naf~lF-----------~~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~ee-K~~Y~ 80 (106)
T 4euw_A 30 VKRPMNAFMVW-----------AQAARRKLADQYPHLH-----NAELSKTLGKLWRLLNESE-KRPFV 80 (106)
T ss_dssp CCCCCCHHHHH-----------HHHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHH-HHHHH
T ss_pred CCCCCCHHHHH-----------HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHH-HHHHH
Confidence 34455666665 5667777778889754 4678888999999998554 44443
No 55
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.02 E-value=60 Score=20.32 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
+|-|++.|+..+||+|..++-
T Consensus 31 ~F~V~~~AnK~eIK~AVE~lf 51 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKLF 51 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHHS
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 477899999999999988763
No 56
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.66 E-value=1.4e+02 Score=17.74 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 29 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~ee-K~~y~ 68 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-----NRAISVILGDRWKKMKNEE-RRMYT 68 (87)
T ss_dssp HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHH-HHHHH
Confidence 3456666777788853 5677888999999998555 44553
No 57
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.48 E-value=64 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
+|-|.+.|+..+||+|..++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 477899999999999988864
No 58
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.47 E-value=78 Score=17.49 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.5
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 032817 40 LEVDYDATEEEIRSNYIRL 58 (133)
Q Consensus 40 Lgl~~~as~~~Ikkayr~l 58 (133)
=||++..+.++|++.|.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3789999999999999875
No 59
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.20 E-value=1.4e+02 Score=17.59 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHH--HHHHHcCCh-hHHHHhhh
Q 032817 45 DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEIN--EAYQVLSDP-VKRREYDS 98 (133)
Q Consensus 45 ~as~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~I~--~Ay~~L~dp-~~R~~YD~ 98 (133)
-++.++.+.+|++|....+-+.... -.+....|. .-|.+|.++ .++..|+.
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~t---We~~~~~i~~DpRY~al~~~~eRk~~F~e 64 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNAS---WEQAMKMIINDPRYSALAKLSEKKQAFNA 64 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCC---HHHHHHHHHTSGGGGGCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCC---HHHHHHHHccCccccccCCHHHHHHHHHH
Confidence 4689999999999999886554433 233333332 255666653 34444443
No 60
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=1.4e+02 Score=17.66 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhhh
Q 032817 52 RSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDS 98 (133)
Q Consensus 52 kkayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD~ 98 (133)
-..+|...+.-||+.. + ..+..+.+.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~-~---~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D---EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S---HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-h---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456777778899874 2 46788899999999996655544443
No 61
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.40 E-value=1.5e+02 Score=18.13 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 30 ~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT-----FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 455666667788863 5678888999999998655444433
No 62
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.15 E-value=70 Score=19.97 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 032817 39 ILEVDYDATEEEIRSNYIRLA 59 (133)
Q Consensus 39 iLgl~~~as~~~Ikkayr~l~ 59 (133)
+|-|.+.|+..+||+|..++-
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAF 45 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 478899999999999988763
No 63
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=20.11 E-value=1.3e+02 Score=17.41 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHcCChhHHHHhh
Q 032817 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 97 (133)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~I~~Ay~~L~dp~~R~~YD 97 (133)
+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 15 ~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~ee-K~~y~ 53 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-----NSEISKRLGAEWKLLSETE-KRPFI 53 (80)
T ss_dssp HHHHHHHHTTSTTSC-----HHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 345555566677743 5677888999999998654 44443
Done!