Query 032818
Match_columns 133
No_of_seqs 105 out of 246
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 1.9E-49 4.1E-54 315.0 17.6 131 1-131 1-131 (220)
2 PF01991 vATP-synt_E: ATP synt 99.7 5.6E-15 1.2E-19 112.8 15.9 115 16-130 1-115 (198)
3 COG1390 NtpE Archaeal/vacuolar 99.6 1.7E-13 3.7E-18 108.4 16.9 120 9-130 3-122 (194)
4 PRK03963 V-type ATP synthase s 99.4 1.5E-11 3.4E-16 95.3 17.2 119 10-130 4-122 (198)
5 PRK01194 V-type ATP synthase s 99.3 1.3E-10 2.9E-15 90.8 16.9 118 10-130 3-121 (185)
6 PRK02292 V-type ATP synthase s 99.0 2.3E-08 4.9E-13 77.2 16.1 106 10-121 3-112 (188)
7 PRK01558 V-type ATP synthase s 98.0 0.0011 2.4E-08 52.3 17.0 114 3-121 2-115 (198)
8 PRK01005 V-type ATP synthase s 97.6 0.013 2.9E-07 46.9 17.1 110 3-120 7-117 (207)
9 PRK08475 F0F1 ATP synthase sub 95.4 0.65 1.4E-05 35.6 12.2 86 14-115 79-164 (167)
10 PF06188 HrpE: HrpE/YscL/FliH 94.1 2.3 4.9E-05 33.5 13.6 95 14-120 32-126 (191)
11 TIGR02499 HrpE_YscL_not type I 85.1 13 0.00028 27.4 13.6 98 14-127 15-112 (166)
12 TIGR03321 alt_F1F0_F0_B altern 82.0 25 0.00054 28.3 13.8 90 17-118 65-154 (246)
13 PRK01194 V-type ATP synthase s 82.0 22 0.00048 27.7 9.8 94 7-100 11-117 (185)
14 PRK14474 F0F1 ATP synthase sub 74.2 46 0.001 27.1 11.6 88 19-118 67-154 (250)
15 PRK07352 F0F1 ATP synthase sub 72.3 40 0.00087 25.6 14.3 91 17-119 79-169 (174)
16 CHL00019 atpF ATP synthase CF0 68.7 51 0.0011 25.3 15.9 90 17-118 84-173 (184)
17 PRK06231 F0F1 ATP synthase sub 68.5 57 0.0012 25.8 13.9 92 16-119 107-198 (205)
18 PRK14473 F0F1 ATP synthase sub 67.6 50 0.0011 24.7 14.1 93 15-119 66-158 (164)
19 TIGR02926 AhaH ATP synthase ar 61.5 48 0.001 22.4 7.9 46 15-60 23-68 (85)
20 COG2811 NtpF Archaeal/vacuolar 60.2 66 0.0014 23.6 9.1 40 16-55 32-71 (108)
21 PRK03963 V-type ATP synthase s 55.6 91 0.002 23.8 15.0 90 12-101 17-118 (198)
22 PRK13428 F0F1 ATP synthase sub 51.8 1.7E+02 0.0037 25.8 15.5 91 17-118 61-151 (445)
23 PRK13460 F0F1 ATP synthase sub 51.6 1E+02 0.0023 23.3 14.0 92 16-119 75-166 (173)
24 PF01086 Clathrin_lg_ch: Clath 49.1 55 0.0012 26.3 5.7 89 24-118 121-217 (225)
25 PRK02292 V-type ATP synthase s 43.4 1.4E+02 0.0031 22.6 13.0 85 9-96 24-112 (188)
26 PRK07353 F0F1 ATP synthase sub 42.0 1.3E+02 0.0028 21.6 9.4 27 71-97 100-126 (140)
27 PRK13460 F0F1 ATP synthase sub 40.6 1.6E+02 0.0035 22.3 7.9 38 9-46 94-131 (173)
28 PRK05759 F0F1 ATP synthase sub 40.2 1.5E+02 0.0032 21.7 13.9 91 16-118 63-153 (156)
29 PRK13455 F0F1 ATP synthase sub 40.2 1.7E+02 0.0036 22.4 13.5 46 72-118 123-176 (184)
30 PRK07352 F0F1 ATP synthase sub 39.9 1.6E+02 0.0035 22.2 7.9 44 6-49 94-137 (174)
31 PRK09098 type III secretion sy 39.4 2.1E+02 0.0045 23.2 16.4 103 8-127 46-148 (233)
32 CHL00118 atpG ATP synthase CF0 39.1 1.6E+02 0.0035 21.9 9.4 36 17-52 82-117 (156)
33 PF01765 RRF: Ribosome recycli 38.3 1.7E+02 0.0038 22.1 8.8 20 42-61 144-163 (165)
34 PRK14472 F0F1 ATP synthase sub 38.1 1.8E+02 0.0038 22.0 13.8 90 17-118 78-167 (175)
35 TIGR02926 AhaH ATP synthase ar 37.6 1.3E+02 0.0028 20.3 7.9 21 73-93 51-71 (85)
36 PF03179 V-ATPase_G: Vacuolar 36.8 1.4E+02 0.0031 20.6 10.0 43 80-122 59-101 (105)
37 PRK08404 V-type ATP synthase s 35.7 1.6E+02 0.0035 20.9 11.1 24 73-96 55-78 (103)
38 PRK09174 F0F1 ATP synthase sub 33.8 2.4E+02 0.0052 22.3 9.4 22 17-38 113-134 (204)
39 PF10557 Cullin_Nedd8: Cullin 33.0 23 0.00051 23.0 1.0 59 69-127 4-64 (68)
40 PRK06231 F0F1 ATP synthase sub 32.0 2.5E+02 0.0055 22.1 7.9 42 16-57 118-159 (205)
41 PRK08404 V-type ATP synthase s 32.0 1.9E+02 0.004 20.5 7.9 59 17-75 18-76 (103)
42 PRK00106 hypothetical protein; 31.9 4.1E+02 0.0089 24.5 14.5 100 17-120 58-158 (535)
43 PRK08475 F0F1 ATP synthase sub 31.4 2.3E+02 0.005 21.5 8.1 45 7-51 98-142 (167)
44 PRK13461 F0F1 ATP synthase sub 31.4 2.2E+02 0.0047 21.1 13.9 92 16-119 64-155 (159)
45 PF05010 TACC: Transforming ac 31.4 2.8E+02 0.006 22.3 14.3 103 7-114 4-106 (207)
46 CHL00019 atpF ATP synthase CF0 31.1 2.4E+02 0.0052 21.5 7.9 39 10-48 103-141 (184)
47 PF08216 CTNNBL: Catenin-beta- 30.1 67 0.0015 23.5 3.1 52 77-128 45-98 (108)
48 PRK13461 F0F1 ATP synthase sub 29.8 2.3E+02 0.005 20.9 7.9 35 12-46 86-120 (159)
49 PF01991 vATP-synt_E: ATP synt 29.3 2.4E+02 0.0052 21.0 10.9 85 17-101 13-111 (198)
50 PF10779 XhlA: Haemolysin XhlA 29.1 1.7E+02 0.0037 19.1 6.6 49 77-125 20-68 (71)
51 PRK01558 V-type ATP synthase s 28.9 2.8E+02 0.0061 21.6 11.1 22 14-35 24-45 (198)
52 PF07246 Phlebovirus_NSM: Phle 24.1 4.4E+02 0.0096 22.3 12.8 56 76-131 208-263 (264)
53 PF07052 Hep_59: Hepatocellula 22.7 60 0.0013 23.0 1.7 15 11-25 14-28 (104)
54 TIGR03321 alt_F1F0_F0_B altern 22.5 4.1E+02 0.0088 21.3 7.6 29 16-44 90-118 (246)
55 PF10118 Metal_hydrol: Predict 22.4 83 0.0018 25.7 2.7 19 2-23 55-73 (253)
56 KOG3221 Glycolipid transfer pr 22.2 4.3E+02 0.0094 21.5 7.0 79 53-133 66-150 (199)
57 PF10669 Phage_Gp23: Protein g 22.0 3.3E+02 0.0072 20.1 6.4 42 47-90 51-92 (121)
58 PRK08476 F0F1 ATP synthase sub 20.7 3.5E+02 0.0076 19.9 9.1 37 17-53 67-103 (141)
59 cd03527 RuBisCO_small Ribulose 20.6 89 0.0019 22.5 2.2 15 1-15 12-26 (99)
60 PRK12704 phosphodiesterase; Pr 20.3 6.6E+02 0.014 22.8 16.0 109 4-120 34-143 (520)
61 PF10504 DUF2452: Protein of u 20.2 4.3E+02 0.0093 20.7 6.9 45 4-57 33-77 (159)
62 PF04782 DUF632: Protein of un 20.1 5.5E+02 0.012 21.9 8.7 73 49-124 105-180 (312)
63 PRK14473 F0F1 ATP synthase sub 20.0 3.7E+02 0.0081 19.9 7.9 42 19-60 81-122 (164)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=1.9e-49 Score=315.05 Aligned_cols=131 Identities=56% Similarity=0.747 Sum_probs=129.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032818 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (133)
Q Consensus 1 m~d~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLk 80 (133)
|||++|++||+||++||+|||+|||+||+++|+|||||||++||++++.+|+++|++|+||++++++|+.||++|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCCC
Q 032818 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEMP 131 (133)
Q Consensus 81 vL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~~ 131 (133)
+|++|+++|+++|++|+++|.+++.|++.|+.+|++||+|||++|.+|.|-
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~I 131 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVI 131 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 999999999999999999999999999999999999999999999999873
No 2
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.67 E-value=5.6e-15 Score=112.79 Aligned_cols=115 Identities=31% Similarity=0.384 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
||.+||+.+|++|...|.++++-.+..........+...+++..++++..+..+.|...+.+|..+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
++.+|..++.+++.|+.+|.+||.+++-.+.++++
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~ 115 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEV 115 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCce
Confidence 99999999999877999999999999988876543
No 3
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.58 E-value=1.7e-13 Score=108.42 Aligned_cols=120 Identities=26% Similarity=0.379 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032818 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (133)
Q Consensus 9 qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~ 88 (133)
.+..|++||.++|.++|++|...|.++++..+...+......++..+.+.+++++..++...|+..+++|..+|.++.++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 89 l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
|+++++.+.++|..+..+|. |.. |..|+.+++.++.++++
T Consensus 83 l~~~~~~~~e~L~~i~~~~~-~~~-l~~ll~~~~~~~~~~~~ 122 (194)
T COG1390 83 LESVFEAVEEKLRNIASDPE-YES-LQELLIEALEKLLGGEL 122 (194)
T ss_pred HHHHHHHHHHHHHcCcCCcc-hHH-HHHHHHHHHHhcCCCCe
Confidence 99999999999999999987 444 99999999999998875
No 4
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=99.44 E-value=1.5e-11 Score=95.26 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 032818 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (133)
Q Consensus 10 i~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l 89 (133)
+..++.=|..+|+.++++|-..|..+.+-........-.......-++-...++..++...|+..++.|.++|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999888766666555555555555556666788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 90 ~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
+++|++|.++|..++.+ .|+.+|.+||.+|+..|.++++
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i 122 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKV 122 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcE
Confidence 99999999999998876 7999999999999999876654
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.34 E-value=1.3e-10 Score=90.78 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032818 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK-QVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (133)
Q Consensus 10 i~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~K-q~e~~kkI~~S~~~N~~RLkvL~ar~~~ 88 (133)
+..++.=|..+|+.+|++|-..|..+.+- =..-...+-.++...|..+.+ +++..++-..|+.-=.+|+++|.+|+++
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~aee-i~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~ 81 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIEK-LEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566667777777777777777766432 222233344445555555543 2333333333555557899999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 89 l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
|+++|+.|.++|..+++++ .|+.+|.+||++|++. ++|++
T Consensus 82 I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~ 121 (185)
T PRK01194 82 LKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDC 121 (185)
T ss_pred HHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCe
Confidence 9999999999999999876 7999999999999999 55543
No 6
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.05 E-value=2.3e-08 Score=77.21 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHH-HhhHHHHHHHHHhHhhhHHHHHHHHHH
Q 032818 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEYERK-EKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (133)
Q Consensus 10 i~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~k---I~~~yekK-~Kq~e~~kkI~~S~~~N~~RLkvL~ar 85 (133)
+...+.=|.++|+..+++|...|+.+-.- ++...... |...+..+ .+....-.+.+.|...|.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~~----i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAEE----IIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999988877543 44443333 44444333 334444555789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 032818 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQA 121 (133)
Q Consensus 86 ~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qg 121 (133)
+.+|+++|+.|+.+|..++.+ .|..+|.+||.+|
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~ 112 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc
Confidence 999999999999999998875 7999999999998
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=98.02 E-value=0.0011 Score=52.28 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHH
Q 032818 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (133)
Q Consensus 3 d~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL 82 (133)
+.+++.=+.+|..=|..+|+.+|.+|-..|.++- ..|+..-...-..-.++=.++++.-+++..|......|-.+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eA----e~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEA----EEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999998864 448877777777777777888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 032818 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQA 121 (133)
Q Consensus 83 ~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qg 121 (133)
.++..+++.+.+.+...+.... |++.|..++..|+...
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~ 115 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSW 115 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Confidence 9999999866555555445444 8889999999998765
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.60 E-value=0.013 Score=46.95 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHH
Q 032818 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (133)
Q Consensus 3 d~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL 82 (133)
++.++.=+.+|..-|..+|+.+|.+|-..|..+=+ .|+.+-+......-+.=.++++..++-..|+.-=..|-.+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888899999999999999999988764 48888777777777777778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHH
Q 032818 83 QAQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQ 120 (133)
Q Consensus 83 ~ar~~~l~~l~~ea~~kL~~-~~~d~~~Y~~lL~~LI~Q 120 (133)
.++.++++.+|..+.++|.. ...||+ +|..||+.
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~~----~l~~lI~~ 117 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDPE----VSAKLIQA 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHH
Confidence 99999999999999999987 445654 66666654
No 9
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=95.40 E-value=0.65 Score=35.60 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032818 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (133)
Q Consensus 14 ~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~ 93 (133)
..-+..+|+.+|.+|-..|..+-+.++..++.+-+......-++-... +-+..+--+...|.++++++|
T Consensus 79 ~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~-----------ie~Ek~~a~~elk~eii~~~~ 147 (167)
T PRK08475 79 ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEEL-----------MEFEVRKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999988888888777776666555554444 444455567888999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHH
Q 032818 94 EAASKEVLNVSRDHNSYKKLLK 115 (133)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~ 115 (133)
+. +|.++ |++.|-.++.
T Consensus 148 ~~---~~~~l--~~~~y~~~~~ 164 (167)
T PRK08475 148 ES---KKVSL--NQQEYVNILL 164 (167)
T ss_pred Hh---hhcCC--CHHHHHHHHh
Confidence 99 55444 5667887764
No 10
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=94.11 E-value=2.3 Score=33.47 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032818 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (133)
Q Consensus 14 ~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~ 93 (133)
..=|...|+.+|+.|-..|++++.. ++.+....+...|-......-. ..-..|-.+...-.+.+..++
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~a~~ll~--------~~~~~~e~l~~~l~~~~~~ll 99 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQANALLQ--------EWQQQREQLLQQLEEQAEELL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999876 6666666666666544332211 111334556666677888899
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHH
Q 032818 94 EAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (133)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~Q 120 (133)
..|-.+|.+-..++.++..++..|..+
T Consensus 100 ~~al~~lL~e~~~~qrv~aLlr~l~~~ 126 (191)
T PF06188_consen 100 SQALERLLDETPDQQRVAALLRQLLAS 126 (191)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 999999998888888899888888643
No 11
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=85.11 E-value=13 Score=27.37 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032818 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (133)
Q Consensus 14 ~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~ 93 (133)
-.=|..+|+.+|+.|-..|.++++-.+..-.++....-..+.....-..... +-+.+..=..-+-.+.
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~------------~~~~~~~~e~~l~~l~ 82 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQE------------AEQLEASLEERLAELV 82 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 3457789999999999999999988777766666555544444333221111 1111111122222333
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcc
Q 032818 94 EAASKEVLNVSRDHNSYKKLLKGLIVQAERASCV 127 (133)
Q Consensus 94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~ 127 (133)
-.+-.++..-. ..+.++..++.+++-.+.+
T Consensus 83 ~~~~~kil~~~----~~~e~l~~lv~~al~~~~~ 112 (166)
T TIGR02499 83 LQALEQILGEY----DEPERLVRLLRQLLRAVAN 112 (166)
T ss_pred HHHHHHHhCCC----CCHHHHHHHHHHHHHhCCC
Confidence 33333333332 2456777777777777665
No 12
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=82.04 E-value=25 Score=28.31 Aligned_cols=90 Identities=11% Similarity=0.211 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
...+|+..+.+|-..|..+-.-++..++.+-+..+....+.-...++.++.-... ..|.++.+-.+.-|
T Consensus 65 ~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~-----------~l~~ei~~la~~~A 133 (246)
T TIGR03321 65 KNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD-----------ELRRRTGAEVFAIA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4557888888888888888888888888888888887777777777666555433 33556666667777
Q ss_pred HHHHHhhccChhHHHHHHHHHH
Q 032818 97 SKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
.+-|.+.. |++..+.++...|
T Consensus 134 ~kil~~~~-d~~~~~~lid~~i 154 (246)
T TIGR03321 134 RKVLTDLA-DTDLEERMVDVFV 154 (246)
T ss_pred HHHHHHhc-ChHHHHHHHHHHH
Confidence 77666654 4455666666555
No 13
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=82.04 E-value=22 Score=27.68 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------hHhhhHHH
Q 032818 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY--------SMQLNASR 78 (133)
Q Consensus 7 ~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~--------S~~~N~~R 78 (133)
.+.-+.=..-|..+|+.+|++|...|+++.+-.+..+...-...+...+++-...+.+..|-.. ..+.+.++
T Consensus 11 ~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~ 90 (185)
T PRK01194 11 EKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAY 90 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778999999999999999999999999999998888888888888887777655432 22344444
Q ss_pred HHH--HH---HHHHHHHHHHHHHHHHH
Q 032818 79 IKV--LQ---AQDDLVSNMMEAASKEV 100 (133)
Q Consensus 79 Lkv--L~---ar~~~l~~l~~ea~~kL 100 (133)
-++ |. ...++|..|+..+-..|
T Consensus 91 e~L~~l~~~~~Y~~~L~~LI~~a~~~l 117 (185)
T PRK01194 91 EHLMNITKSKEYDSILNKMIEVAIKTL 117 (185)
T ss_pred HHHHcccCCchHHHHHHHHHHHHHHhc
Confidence 444 32 34566677777665543
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=74.20 E-value=46 Score=27.12 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032818 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (133)
Q Consensus 19 qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea~~ 98 (133)
.+|+.++.+|-..|..+-+-++..++.+-+..+....++....++..+.-....+ |.++.+-.+.-|.+
T Consensus 67 ~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L-----------~~~v~~la~~~A~k 135 (250)
T PRK14474 67 QSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKAL-----------QQQTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4677777788888888888888888888777777777777777666665554433 34444555555555
Q ss_pred HHHhhccChhHHHHHHHHHH
Q 032818 99 EVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 99 kL~~~~~d~~~Y~~lL~~LI 118 (133)
-|.+.. |++....++..+|
T Consensus 136 iL~~~~-d~~~~~~lid~~i 154 (250)
T PRK14474 136 ALADLA-NATLEQQIVGIFI 154 (250)
T ss_pred HHHhhc-CHHHHHHHHHHHH
Confidence 555544 4344555555544
No 15
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=72.29 E-value=40 Score=25.56 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
...+|+.+|.+|-..|..+-+.++..++.+-...+....+.-...++..+.-... .-|.++.+-.++-|
T Consensus 79 ~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-----------~l~~qi~~la~~~A 147 (174)
T PRK07352 79 KLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIA-----------QLRREAAELAIAKA 147 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4566777777777777777777777777666666665555555555444433322 33455666666777
Q ss_pred HHHHHhhccChhHHHHHHHHHHH
Q 032818 97 SKEVLNVSRDHNSYKKLLKGLIV 119 (133)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI~ 119 (133)
.+-|..-. |++....++..+|-
T Consensus 148 ~kil~~~l-~~~~~~~li~~~i~ 169 (174)
T PRK07352 148 ESQLPGRL-DEDAQQRLIDRSIA 169 (174)
T ss_pred HHHHHhHc-CHHHHHHHHHHHHH
Confidence 77776655 44556666666653
No 16
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=68.68 E-value=51 Score=25.28 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
+..+|+..|.+|-..|..+.+-++..++.+-...+....+.-...++..+.-+. -..|.++.+-.++-|
T Consensus 84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~-----------~~l~~ei~~lav~~A 152 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAI-----------NQVRQQVFQLALQRA 152 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 667888888888888888888888888877777776666655555555544432 234556666677777
Q ss_pred HHHHHhhccChhHHHHHHHHHH
Q 032818 97 SKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
.+-|.+.. |++....++...|
T Consensus 153 ~kil~~~l-d~~~~~~lid~~i 173 (184)
T CHL00019 153 LGTLNSCL-NNELHLRTINANI 173 (184)
T ss_pred HHHHHhHc-CHHHHHHHHHHHH
Confidence 77777755 5555666666555
No 17
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=68.52 E-value=57 Score=25.80 Aligned_cols=92 Identities=21% Similarity=0.131 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
-..++|+.+|.+|-..|.++-+.++..++.+-+..+...-+.-...++..+.-+.. .-+.++.+-..+-
T Consensus 107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~-----------~Lk~ei~~lAv~i 175 (205)
T PRK06231 107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKE-----------QLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34566777777777777777777777776655555444444333333333322211 1233333333444
Q ss_pred HHHHHHhhccChhHHHHHHHHHHH
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLIV 119 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~ 119 (133)
|.+-|.+-. |++..+.++...|-
T Consensus 176 A~kiL~k~l-d~~~~~~lI~~~i~ 198 (205)
T PRK06231 176 AEELIKKKV-DREDDDKLVDEFIR 198 (205)
T ss_pred HHHHHHhhC-CHHHHHHHHHHHHH
Confidence 444444433 55667777777663
No 18
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=67.56 E-value=50 Score=24.72 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032818 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (133)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ 94 (133)
.-...+|+..|.+|-..|..+-.-++..++..-........+.-..+++..+.-... .-|.++.+-.++
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~-----------~L~~~i~~la~~ 134 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLS-----------ELKSQIADLVTL 134 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344567777777777777777777777777776666666665555555555444333 224444555555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 032818 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (133)
Q Consensus 95 ea~~kL~~~~~d~~~Y~~lL~~LI~ 119 (133)
-|.+-|..-. |++....++...|-
T Consensus 135 ~a~kil~~~l-~~~~~~~li~~~i~ 158 (164)
T PRK14473 135 TASRVLGAEL-QARGHDALIAESLA 158 (164)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHHH
Confidence 5555554433 66667777776663
No 19
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=61.47 E-value=48 Score=22.42 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032818 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (133)
Q Consensus 15 ~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~K 60 (133)
.-|..+|...|..|...+..+-.-+..+++..-+..|..+..+=..
T Consensus 23 ~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~ 68 (85)
T TIGR02926 23 KQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIRE 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666655555444333
No 20
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=60.19 E-value=66 Score=23.65 Aligned_cols=40 Identities=33% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~y 55 (133)
=|..+|.++|++|-.+|+.+-.-.+..++...+..+...-
T Consensus 32 ~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea 71 (108)
T COG2811 32 QIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEA 71 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888777777777666665555443
No 21
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=55.63 E-value=91 Score=23.81 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------hHhhhHHHHHHHH
Q 032818 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY--------SMQLNASRIKVLQ 83 (133)
Q Consensus 12 ~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~--------S~~~N~~RLkvL~ 83 (133)
.=.+=|..+|+.+|.+|...|.++.+.+...++...+..+...-.+-...+..+.+-.. +.+.+.++-++..
T Consensus 17 ~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~ 96 (198)
T PRK03963 17 QKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRERLAE 96 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555667777777777777777777777777777666666655555555554444333 3344455544443
Q ss_pred H----HHHHHHHHHHHHHHHHH
Q 032818 84 A----QDDLVSNMMEAASKEVL 101 (133)
Q Consensus 84 a----r~~~l~~l~~ea~~kL~ 101 (133)
- -..+|..++.++-..|.
T Consensus 97 ~~~~~Y~~~l~~li~~a~~~l~ 118 (198)
T PRK03963 97 LPEDEYFETLKALTKEAVEELG 118 (198)
T ss_pred hhhhhHHHHHHHHHHHHHHHhC
Confidence 2 23567777777777664
No 22
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.80 E-value=1.7e+02 Score=25.84 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
+..+|+.++.+|-..|.++-+-++..++.+-...+....+.-..+++..+.-. +-..|.++.+-.+.-|
T Consensus 61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a-----------~~elr~ei~~lAv~~A 129 (445)
T PRK13428 61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQL-----------TRQLRLELGHESVRQA 129 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444333333333333333322221 1122444555556666
Q ss_pred HHHHHhhccChhHHHHHHHHHH
Q 032818 97 SKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
.+-|.+-..|++.-+.++...|
T Consensus 130 ~kil~~~l~d~~~~~~lId~~i 151 (445)
T PRK13428 130 GELVRNHVADPAQQSATVDRFL 151 (445)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666654445444455555544
No 23
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=51.65 E-value=1e+02 Score=23.30 Aligned_cols=92 Identities=22% Similarity=0.280 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
-...+|+..+.+|-..|..+-.-++..++..-...+...-+.-...++..+.-... .-|.++.+-.++-
T Consensus 75 ~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~-----------el~~ei~~lA~~~ 143 (173)
T PRK13460 75 ARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALS-----------QLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34566777777777777777777777776666655555544444444444332222 1233444444444
Q ss_pred HHHHHHhhccChhHHHHHHHHHHH
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLIV 119 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~ 119 (133)
|.+-|..-. |++....++...|-
T Consensus 144 a~kil~~~l-~~~~~~~lid~~i~ 166 (173)
T PRK13460 144 ASKVLEKQL-KKEDYKAFIETELA 166 (173)
T ss_pred HHHHHHHHC-CHHHHHHHHHHHHH
Confidence 555454433 55556666666553
No 24
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=49.05 E-value=55 Score=26.31 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=33.9
Q ss_pred HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH------HHHHHHH-
Q 032818 24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV------SNMMEAA- 96 (133)
Q Consensus 24 KA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l------~~l~~ea- 96 (133)
...+|..+..++ .-.|..++...+..|+..|+....+++..++-.+-. .+ ..|..|++.+ +.|..-+
T Consensus 121 ~~~~i~ekD~~e-~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~--ee---~fl~~~~~~~~~~t~WerV~~Lid 194 (225)
T PF01086_consen 121 RDKRIEEKDAEE-EEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREE--EE---EFLAKREEFLQPGTEWERVAKLID 194 (225)
T ss_dssp HTTTSTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHcccccCCCCCcHHHHHHHhC
Confidence 345676665555 667888999999999999999988877665433211 11 3455565543 1111111
Q ss_pred -HHHHHhhccChhHHHHHHHHHH
Q 032818 97 -SKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 97 -~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
..+=..-.+|.++++.||-.|-
T Consensus 195 ~~~~~~~~~kD~sRmR~iLl~LK 217 (225)
T PF01086_consen 195 FNPKSSKSGKDVSRMREILLKLK 217 (225)
T ss_dssp -----------------------
T ss_pred CCCCCCCCCCcHHHHHHHHHHhh
Confidence 0000114578889999988774
No 25
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=43.35 E-value=1.4e+02 Score=22.58 Aligned_cols=85 Identities=25% Similarity=0.244 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH----
Q 032818 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA---- 84 (133)
Q Consensus 9 qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~a---- 84 (133)
+.++-+.=|..+|+.+|++|...+.++..-+...+.............+. .+. .++---+.+.+.++-++...
T Consensus 24 ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~--~L~-~r~~~l~~v~~~a~~kL~~~~~~~ 100 (188)
T PRK02292 24 EADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRE--RLN-ARKEVLEDVRNQVEDEIASLDGDK 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHhcchhh
Confidence 34444555555666666666666666666666666555444444433333 222 22223344555555555432
Q ss_pred HHHHHHHHHHHH
Q 032818 85 QDDLVSNMMEAA 96 (133)
Q Consensus 85 r~~~l~~l~~ea 96 (133)
...+|..++..+
T Consensus 101 y~~~l~~li~~~ 112 (188)
T PRK02292 101 REELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHhc
Confidence 446777777766
No 26
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.04 E-value=1.3e+02 Score=21.62 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=15.2
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032818 71 SMQLNASRIKVLQAQDDLVSNMMEAAS 97 (133)
Q Consensus 71 S~~~N~~RLkvL~ar~~~l~~l~~ea~ 97 (133)
....+.+|-.+-..+...+..+..++-
T Consensus 100 ~~~~~~a~~~i~~e~~~a~~~l~~~v~ 126 (140)
T PRK07353 100 QASKEKARREIEQQKQAALAQLEQQVD 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655555443
No 27
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.64 E-value=1.6e+02 Score=22.28 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Q 032818 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (133)
Q Consensus 9 qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ 46 (133)
+..++..-|..+|++.++.|...|..+...|+.+...+
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~e 131 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQ 131 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555544444444433
No 28
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=40.21 E-value=1.5e+02 Score=21.70 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
-...+|+.++.+|...|..+=.-++..++.+-...+....+.-...++..+.-. .-..+..+.+-...-
T Consensus 63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a-----------~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRA-----------REELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445566667777777777766666666666555555544444444444333322 223344455555555
Q ss_pred HHHHHHhhccChhHHHHHHHHHH
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
|.+-|.+.. |++.-..++...|
T Consensus 132 a~k~l~~~~-d~~~~~~~i~~~i 153 (156)
T PRK05759 132 AEKILGREL-DAAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHhHc-CHHHHHHHHHHHH
Confidence 555555443 5555555555554
No 29
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.18 E-value=1.7e+02 Score=22.36 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=22.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccChhHHHHHHHHHH
Q 032818 72 MQLNASRIKVLQAQDDLVSNMME--------AASKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 72 ~~~N~~RLkvL~ar~~~l~~l~~--------ea~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
..+..+|-.+-..|...+.++.. -|.+-|.. .-|+.....++...|
T Consensus 123 ~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~-~l~~~~~~~lid~~i 176 (184)
T PRK13455 123 RRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAK-QMTAADANALIDEAI 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 34445555555555555444433 33333333 235555666666555
No 30
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=39.87 E-value=1.6e+02 Score=22.19 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH
Q 032818 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (133)
Q Consensus 6 v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~ 49 (133)
...+..++..-|..+|+..++.|...|..+.+.|+.+...+=+.
T Consensus 94 a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~ 137 (174)
T PRK07352 94 AKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRR 137 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666666666666666555555544444333
No 31
>PRK09098 type III secretion system protein HrpB; Validated
Probab=39.44 E-value=2.1e+02 Score=23.20 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHH
Q 032818 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDD 87 (133)
Q Consensus 8 ~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~ 87 (133)
..-+..-.=|..+|++.|++|...|.++|+-.+.+=......+=..++..++- +.....+..+.+ .+++
T Consensus 46 a~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~--------~~~~~~~~~~~~---~e~~ 114 (233)
T PRK09098 46 AAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGA--------DHAFAERRAARR---MRER 114 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---HHHH
Confidence 33444555677789999999999999999876655544444433333222222 111112222222 3677
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcc
Q 032818 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCV 127 (133)
Q Consensus 88 ~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~ 127 (133)
+++=++.-+++-+... || ..|-..+.+++..+..
T Consensus 115 Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~ 148 (233)
T PRK09098 115 LAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVD 148 (233)
T ss_pred HHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhc
Confidence 7777777777766532 43 3445667777766643
No 32
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.11 E-value=1.6e+02 Score=21.90 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~ 52 (133)
...+|+..|.+|-..|.++=+-++..++..-+....
T Consensus 82 ~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~ 117 (156)
T CHL00118 82 ELSKARKEAQLEITQSQKEAKEIVENELKQAQKYID 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444444444333
No 33
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=38.30 E-value=1.7e+02 Score=22.06 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 032818 42 QLVEAEKKKIRQEYERKEKQ 61 (133)
Q Consensus 42 ~lV~~ek~kI~~~yekK~Kq 61 (133)
.+.......|+..|..|+|+
T Consensus 144 ~l~~~~~~~id~~~~~keke 163 (165)
T PF01765_consen 144 KLTDKYIKKIDELLKKKEKE 163 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555554
No 34
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.13 E-value=1.8e+02 Score=22.04 Aligned_cols=90 Identities=14% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
...+|+..|.+|-..|.++-+-++..++..-...+....+.-...++..+.-.. -.-|.++.+-.+.-|
T Consensus 78 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~-----------~~l~~~i~~lA~~~a 146 (175)
T PRK14472 78 LLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRAL-----------DVLRNEVADLAVKGA 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 344566666666666666666655555555554444444433333333322221 122333444444444
Q ss_pred HHHHHhhccChhHHHHHHHHHH
Q 032818 97 SKEVLNVSRDHNSYKKLLKGLI 118 (133)
Q Consensus 97 ~~kL~~~~~d~~~Y~~lL~~LI 118 (133)
.+-|.+.. |++....++...|
T Consensus 147 ~kil~~~l-~~~~~~~li~~~i 167 (175)
T PRK14472 147 EKIIRTSL-DADKQKKVVDSMI 167 (175)
T ss_pred HHHHHHHC-CHHHHHHHHHHHH
Confidence 44444433 4444555555544
No 35
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=37.56 E-value=1.3e+02 Score=20.28 Aligned_cols=21 Identities=0% Similarity=0.049 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 032818 73 QLNASRIKVLQAQDDLVSNMM 93 (133)
Q Consensus 73 ~~N~~RLkvL~ar~~~l~~l~ 93 (133)
++-.+|..+-..+...+..+-
T Consensus 51 ii~~Ak~ei~~e~~~a~~e~k 71 (85)
T TIGR02926 51 IIKEAEEEIEKEAEKIREEGE 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 36
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=36.85 E-value=1.4e+02 Score=20.63 Aligned_cols=43 Identities=2% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q 032818 80 KVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAE 122 (133)
Q Consensus 80 kvL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl 122 (133)
+.+...+.....|..++..++..+..+...-..-..++|+.-+
T Consensus 59 ~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 59 EAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555667777777788888877776665545555555555443
No 37
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=35.70 E-value=1.6e+02 Score=20.86 Aligned_cols=24 Identities=0% Similarity=0.011 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 73 QLNASRIKVLQAQDDLVSNMMEAA 96 (133)
Q Consensus 73 ~~N~~RLkvL~ar~~~l~~l~~ea 96 (133)
.+..+|-.+=..+...+.++-.++
T Consensus 55 ile~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 55 LIEKKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 38
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=33.81 E-value=2.4e+02 Score=22.33 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHhhHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNI 38 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~i 38 (133)
...+|+.++.+|-..|.++-+-
T Consensus 113 ~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 113 ELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433
No 39
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=32.99 E-value=23 Score=23.01 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHhcc
Q 032818 69 EYSMQLNASRIKVLQAQDDL-VSNMMEAASKEVL-NVSRDHNSYKKLLKGLIVQAERASCV 127 (133)
Q Consensus 69 ~~S~~~N~~RLkvL~ar~~~-l~~l~~ea~~kL~-~~~~d~~~Y~~lL~~LI~Qgl~~L~~ 127 (133)
.++..+.++=.++|+.+-.+ .++|+.++.+.|. ....+....+.-+..||-.|.+.-.+
T Consensus 4 ~R~~~I~AaIVrimK~~k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIekeyi~Rd~ 64 (68)
T PF10557_consen 4 DRKYQIDAAIVRIMKQEKKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIEKEYIERDE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHHTTSEEEES
T ss_pred hhhhhhhhheehhhhhcCceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhhhhhcCC
Confidence 35667777888888876543 5677888888887 56667778999999999988776443
No 40
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.05 E-value=2.5e+02 Score=22.09 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yek 57 (133)
-|..+|.+.|+.+...+.++.+.|-.+++.+-+..|..+-.+
T Consensus 118 ~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 118 EIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455555555555544443
No 41
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=31.96 E-value=1.9e+02 Score=20.51 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhh
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N 75 (133)
+..+|+.++.+|-..|..+-+-+...++.+-+......-+.=.+.++..+.-..+.+-+
T Consensus 18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ 76 (103)
T PRK08404 18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEK 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667766666666666666776666666555555555555555444444433
No 42
>PRK00106 hypothetical protein; Provisional
Probab=31.88 E-value=4.1e+02 Score=24.45 Aligned_cols=100 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE-KQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~-Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
|..+|..+|+++...+..+++ .=+...+..+..+|.... +-.....++..-...-..|..-|..|+.-|..--.+
T Consensus 58 I~keA~~EAke~~ke~~lEae----eEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~keke 133 (535)
T PRK00106 58 IKKTAKRESKALKKELLLEAK----EEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQS 133 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHH
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLIVQ 120 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~Q 120 (133)
...+-..+-.-...|..+.......
T Consensus 134 Le~reeeLee~~~~~~~~~~~~~~~ 158 (535)
T PRK00106 134 LTDKSKHIDEREEQVEKLEEQKKAE 158 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 43
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=31.44 E-value=2.3e+02 Score=21.45 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 032818 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (133)
Q Consensus 7 ~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI 51 (133)
..+-.++..=|..+|+..++.+..+|..+=+.|+.+.+.+-+..|
T Consensus 98 ~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~ei 142 (167)
T PRK08475 98 KKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666666665555443
No 44
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.44 E-value=2.2e+02 Score=21.09 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~~l~~e 95 (133)
-...+|+.+|.+|-..|..+-+-++..++.+-........+.-...++..+.-+. -.-|.++.+-.+.-
T Consensus 64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~-----------~~l~~ei~~lA~~~ 132 (159)
T PRK13461 64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAE-----------YEIKNQAVDLAVLL 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666555555444444444333222221 11233333334444
Q ss_pred HHHHHHhhccChhHHHHHHHHHHH
Q 032818 96 ASKEVLNVSRDHNSYKKLLKGLIV 119 (133)
Q Consensus 96 a~~kL~~~~~d~~~Y~~lL~~LI~ 119 (133)
|.+-|.... |++....++...|-
T Consensus 133 a~kil~~~~-~~~~~~~li~~~i~ 155 (159)
T PRK13461 133 SSKALEESI-DESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHhHc-CHHHHHHHHHHHHh
Confidence 444444433 55556666666553
No 45
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.40 E-value=2.8e+02 Score=22.34 Aligned_cols=103 Identities=20% Similarity=0.310 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHH
Q 032818 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQD 86 (133)
Q Consensus 7 ~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~ 86 (133)
++.+...+.-+..|..++-.++..-- ..| ++..--..+-.+|...|++-..++.-...-. ....+..-.+++..|+
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~-~k~--~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~-~~~~~~~i~~~~~erd 79 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELK-KKY--EELHKENQEMRKIMEEYEKTIAQMIEEKQKQ-KELSEAEIQKLLKERD 79 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHH-HHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHhhHH
Confidence 34556666667777555444433321 122 3333344577889999999888866555444 4455666778999999
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHH
Q 032818 87 DLVSNMMEAASKEVLNVSRDHNSYKKLL 114 (133)
Q Consensus 87 ~~l~~l~~ea~~kL~~~~~d~~~Y~~lL 114 (133)
.+..++- .+...+.++-+--.+++.++
T Consensus 80 q~~~dL~-s~E~sfsdl~~ryek~K~vi 106 (207)
T PF05010_consen 80 QAYADLN-SLEKSFSDLHKRYEKQKEVI 106 (207)
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHH
Confidence 9887764 33444444333333333333
No 46
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=31.05 E-value=2.4e+02 Score=21.51 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH
Q 032818 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEK 48 (133)
Q Consensus 10 i~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek 48 (133)
-.++..-|..+|+..++.+...|..+.+.|+.+...+=+
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~ 141 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVR 141 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555454444444433
No 47
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=30.05 E-value=67 Score=23.54 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhccc
Q 032818 77 SRIKVLQAQDDLVSN--MMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVT 128 (133)
Q Consensus 77 ~RLkvL~ar~~~l~~--l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~ 128 (133)
+|.+.=.-=..++++ =+.++-++|..++..|+-|+.+.+.=++.+|+.|+.-
T Consensus 45 ~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 45 MRIKYPDDPEKFMDSEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHhCCCCHHHHHHhHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 344444444455554 3467778899999999999999987788999988754
No 48
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=29.78 E-value=2.3e+02 Score=20.92 Aligned_cols=35 Identities=29% Similarity=0.139 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Q 032818 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (133)
Q Consensus 12 ~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ 46 (133)
....-|..+|+..++.|...|..+...|+.+.+..
T Consensus 86 ~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~ 120 (159)
T PRK13461 86 NVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYE 120 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 49
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=29.31 E-value=2.4e+02 Score=20.96 Aligned_cols=85 Identities=26% Similarity=0.320 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------HhhhHHHHHHHH-----
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYS--------MQLNASRIKVLQ----- 83 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S--------~~~N~~RLkvL~----- 83 (133)
|..+|++.++.|...|.++-.-.....+......+.....+....+.+..+-... .+.+.++-++-.
T Consensus 13 I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~~~~~ 92 (198)
T PF01991_consen 13 IIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKEKLKSFSKDP 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4556666666666666666666666666666666666665555555544443221 223333333222
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 032818 84 -AQDDLVSNMMEAASKEVL 101 (133)
Q Consensus 84 -ar~~~l~~l~~ea~~kL~ 101 (133)
.-..+|..++.++-..+.
T Consensus 93 ~~Y~~~L~~li~~~~~~~~ 111 (198)
T PF01991_consen 93 DDYKKFLKKLIEEAAEKLG 111 (198)
T ss_dssp -THHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 234667777777766554
No 50
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.13 E-value=1.7e+02 Score=19.14 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHh
Q 032818 77 SRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERAS 125 (133)
Q Consensus 77 ~RLkvL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L 125 (133)
.|+..|..+....+.=.....++|.++..+..-.-.++.|.++=|++.+
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888877888999999999998877778888777776543
No 51
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=28.92 E-value=2.8e+02 Score=21.61 Aligned_cols=22 Identities=50% Similarity=0.471 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhHHhhHHH
Q 032818 14 VRFIRQEAEEKANEISVSAEEE 35 (133)
Q Consensus 14 ~~FI~qEA~EKA~EI~~kA~EE 35 (133)
..-|..+|+.+|++|-..|.++
T Consensus 24 A~~Ii~eA~~eAe~Ii~eA~~e 45 (198)
T PRK01558 24 ANEIILEAKEEAEEIIAKAEEE 45 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777776
No 52
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=24.12 E-value=4.4e+02 Score=22.26 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCCC
Q 032818 76 ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEMP 131 (133)
Q Consensus 76 ~~RLkvL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~~ 131 (133)
.+|-+.|+.+.+.+.+-+..|++....+..+-.....+...|+.=+++.|..+.|.
T Consensus 208 ~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv~~all~t~vl~~~~~~~~ 263 (264)
T PF07246_consen 208 EARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSVPQALLATAVLSLLGSSMI 263 (264)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhcccccc
Confidence 34566667777788888889999888887776777888899999999998887663
No 53
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=22.68 E-value=60 Score=22.96 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 032818 11 QQMVRFIRQEAEEKA 25 (133)
Q Consensus 11 ~~M~~FI~qEA~EKA 25 (133)
+||++||+.|=..+-
T Consensus 14 khM~~YIE~eL~kr~ 28 (104)
T PF07052_consen 14 KHMMKYIEEELAKRK 28 (104)
T ss_pred HHHHHHHHHHHHHhh
Confidence 579999998865543
No 54
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.45 E-value=4.1e+02 Score=21.26 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV 44 (133)
=|..+|++.|+.+...|..+-+.|+.+.+
T Consensus 90 ~i~~~A~~ea~~~~~~a~~~ie~E~~~a~ 118 (246)
T TIGR03321 90 RLLDEAREEADEIREKWQEALRREQAALS 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 55
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=22.44 E-value=83 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 032818 2 NDADVSKQIQQMVRFIRQEAEE 23 (133)
Q Consensus 2 ~d~~v~~qi~~M~~FI~qEA~E 23 (133)
+|.+..++ +..||.|||.-
T Consensus 55 ~D~~L~~~---i~~FIgQEA~H 73 (253)
T PF10118_consen 55 KDPELREE---IKGFIGQEAMH 73 (253)
T ss_pred CCHHHHHH---HHHHHHHHHHH
Confidence 45555555 67999999975
No 56
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=22.21 E-value=4.3e+02 Score=21.45 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHHHHHHhhHHHHHHHHHhHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHH---HHHHHHHHhc
Q 032818 53 QEYERKEKQVEIRKKIEYSMQLNASRI---KVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKG---LIVQAERASC 126 (133)
Q Consensus 53 ~~yekK~Kq~e~~kkI~~S~~~N~~RL---kvL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~---LI~Qgl~~L~ 126 (133)
-.|-.++...+++..|+.++..-.+=| |=|.-=..+++.|....+..|.....| .|...|+. -|+||.++++
T Consensus 66 ~~~Lq~~i~~eie~~~a~~~sat~aLLWLkRgldF~~~~l~~l~~~~~~~l~~av~d--aY~kTLK~~HGwI~q~~Fkva 143 (199)
T KOG3221|consen 66 FKYLQKIVKVEIETDIAEKVSATLALLWLKRGLDFTLAFLQELVNGESDCLIQAVAD--AYEKTLKKYHGWIVQSTFKVA 143 (199)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHhHHHHHHHHHHHHHcchhhHHHHHHHH--HHHHHHHHHHhHHHHHHHHHH
Confidence 345556666666666666211111111 122333456666666666666555544 69988875 5999999999
Q ss_pred ccCCCCC
Q 032818 127 VTEMPQR 133 (133)
Q Consensus 127 ~~~~~~~ 133 (133)
=..||.|
T Consensus 144 LklvP~r 150 (199)
T KOG3221|consen 144 LKLVPDR 150 (199)
T ss_pred HHHcCcH
Confidence 9999965
No 57
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.01 E-value=3.3e+02 Score=20.07 Aligned_cols=42 Identities=7% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 032818 47 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (133)
Q Consensus 47 ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar~~~l~ 90 (133)
|+.+..+.-+++.+.-+-.+.-.-|++-.+.|| |..+++++-
T Consensus 51 ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~ 92 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMK 92 (121)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHH
Confidence 777777777777777777777777888888887 777776653
No 58
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.71 E-value=3.5e+02 Score=19.86 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032818 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (133)
Q Consensus 17 I~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~ 53 (133)
+..+|+..|..|...|..+-+-|..+++.+-+..+..
T Consensus 67 ~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~ 103 (141)
T PRK08476 67 ILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELES 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 59
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.61 E-value=89 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=12.1
Q ss_pred CChHHHHHHHHHHHH
Q 032818 1 MNDADVSKQIQQMVR 15 (133)
Q Consensus 1 m~d~~v~~qi~~M~~ 15 (133)
|||+++.+||..+++
T Consensus 12 lt~~~i~~QI~yll~ 26 (99)
T cd03527 12 LTDEQIAKQIDYIIS 26 (99)
T ss_pred CCHHHHHHHHHHHHh
Confidence 688899988887764
No 60
>PRK12704 phosphodiesterase; Provisional
Probab=20.30 E-value=6.6e+02 Score=22.82 Aligned_cols=109 Identities=10% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhHhhhHHHHHHH
Q 032818 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV-EIRKKIEYSMQLNASRIKVL 82 (133)
Q Consensus 4 ~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~-e~~kkI~~S~~~N~~RLkvL 82 (133)
.+...+-+.+..=...+|++...++...|++|+ ...+..+..+|..+...+ ....++..-...-..|...|
T Consensus 34 ~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~--------~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~L 105 (520)
T PRK12704 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI--------HKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 032818 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (133)
Q Consensus 83 ~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Q 120 (133)
..++.-|..--.+...+...+..-...|..+.......
T Consensus 106 ekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~ 143 (520)
T PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=20.21 E-value=4.3e+02 Score=20.68 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032818 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (133)
Q Consensus 4 ~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yek 57 (133)
-+...+|.+...|++.-|.-|..-|. +-.+.++.+-.+|.++++.
T Consensus 33 v~la~~iq~Ad~~~~~~t~~kL~~I~---------eQi~~Lq~QA~~ile~~~~ 77 (159)
T PF10504_consen 33 VDLAQQIQKADSAMRANTCNKLEVIA---------EQIRFLQEQARKILEEAER 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988776 4455677777777776654
No 62
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=20.12 E-value=5.5e+02 Score=21.88 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhHHHH-HHHHHhHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 032818 49 KKIRQEYERKEKQVEIR-KKIEYSMQLNASR--IKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERA 124 (133)
Q Consensus 49 ~kI~~~yekK~Kq~e~~-kkI~~S~~~N~~R--LkvL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~ 124 (133)
.+|+-.|+||-+++.-+ .+=+.+..+-++| .+-|.+|=.+--...+.+-.++.++. |.+=|+.|+. .++||..
T Consensus 105 E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLR-DeEL~PQL~e--Li~Gl~~ 180 (312)
T PF04782_consen 105 EKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLR-DEELYPQLVE--LIQGLMR 180 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHH
Confidence 46888899998886543 2333444445544 56677777777777888888887774 5566887765 3456554
No 63
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.02 E-value=3.7e+02 Score=19.89 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032818 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (133)
Q Consensus 19 qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~K 60 (133)
.+|...|+.+....-++.+-|=.+++.+-...|..+-++=..
T Consensus 81 ~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~ 122 (164)
T PRK14473 81 AQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLS 122 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344555555555554444333
Done!