Query 032818
Match_columns 133
No_of_seqs 105 out of 246
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 4.6E-38 1.6E-42 248.8 19.3 130 1-130 8-137 (233)
2 3v6i_A V-type ATP synthase sub 99.5 2.7E-12 9.2E-17 97.9 17.0 114 12-130 2-119 (187)
3 2dm9_A V-type ATP synthase sub 99.5 4.2E-14 1.4E-18 106.0 4.5 112 6-130 11-122 (198)
4 2kk7_A V-type ATP synthase sub 53.1 35 0.0012 20.6 6.5 37 10-50 8-44 (52)
5 3m91_A Proteasome-associated A 50.6 34 0.0012 20.9 4.7 29 76-104 15-43 (51)
6 2dm9_A V-type ATP synthase sub 44.1 7.6 0.00026 27.9 1.1 33 85-118 102-138 (198)
7 3v6i_A V-type ATP synthase sub 38.9 1.1E+02 0.0037 22.1 14.1 90 12-101 13-115 (187)
8 3b8m_A Ferric enterobactin (en 35.9 1.6E+02 0.0054 23.2 10.3 73 2-75 129-202 (280)
9 1l2p_A ATP synthase B chain; a 31.9 83 0.0028 18.7 6.9 40 16-55 13-52 (61)
10 3tdu_C Cullin-1, CUL-1; E2:E3, 28.7 94 0.0032 20.1 4.5 55 70-124 8-64 (77)
11 3b8o_A Lipopolysaccharide bios 26.0 2.3E+02 0.0078 21.9 9.1 76 2-78 114-190 (265)
12 4e29_A Chimeric WZZB chain len 23.7 2.7E+02 0.0091 21.8 10.5 74 2-76 95-169 (248)
13 3o2p_E Cell division control p 23.6 1.3E+02 0.0043 20.0 4.5 55 70-124 20-76 (88)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=4.6e-38 Score=248.84 Aligned_cols=130 Identities=30% Similarity=0.498 Sum_probs=128.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032818 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (133)
Q Consensus 1 m~d~~v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLk 80 (133)
|||+||++||++|++||.+||++||+||..+|++||++||+++|++++.+|+..|++++++++++++|+.|+..|++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 81 vL~ar~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
+|.+|+++|+++|++|+++|..+++|+..|+.+|.+||+||+++|.+|+|
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v 137 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKA 137 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999875
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.49 E-value=2.7e-12 Score=97.92 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHhHhhhHHHHHHHHHHHH
Q 032818 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE----IRKKIEYSMQLNASRIKVLQAQDD 87 (133)
Q Consensus 12 ~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e----~~kkI~~S~~~N~~RLkvL~ar~~ 87 (133)
+..+-|+.||+.+|++|-..|.++- ..|+.+.+.+....++...+.++ .......|+..+..|.++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a----~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKA----EAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888877653 44777777666666666555443 445667999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 88 ~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
+++++|++|+++|..+++| ..|+.+|.+||.||+..|.+|++
T Consensus 78 li~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~ 119 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKA 119 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCe
Confidence 9999999999999999998 45999999999999999988864
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.45 E-value=4.2e-14 Score=106.05 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHH
Q 032818 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (133)
Q Consensus 6 v~~qi~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~RLkvL~ar 85 (133)
+-.+-+.|.+||.+||+++|++|...|.++|+.++..++++.. ++++..+++..|+..|+.|..++.+|
T Consensus 11 il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~~ 79 (198)
T 2dm9_A 11 INKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAIQ 79 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999884 45667888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHhcccCC
Q 032818 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQAERASCVTEM 130 (133)
Q Consensus 86 ~~~l~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~~L~~~~~ 130 (133)
+++++.+++.|.+.|..++ ++.|+.+|.+||.+|+..+.++++
T Consensus 80 ~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v 122 (198)
T 2dm9_A 80 EEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKV 122 (198)
T ss_dssp -CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCE
Confidence 9999999999999999954 567999999999999998866553
No 4
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=53.13 E-value=35 Score=20.57 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHH
Q 032818 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (133)
Q Consensus 10 i~~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~k 50 (133)
+..++.=|..+|+.+|.+|-..|..+-+ .++.....+
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~ 44 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 5678888999999999999988887643 355554443
No 5
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.59 E-value=34 Score=20.94 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032818 76 ASRIKVLQAQDDLVSNMMEAASKEVLNVS 104 (133)
Q Consensus 76 ~~RLkvL~ar~~~l~~l~~ea~~kL~~~~ 104 (133)
+.++.-|.+|+.-|...+.+|+.+|..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999998764
No 6
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=44.09 E-value=7.6 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHH
Q 032818 85 QDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLI 118 (133)
Q Consensus 85 r~~~l~~l~~ea~~kL~~----~~~d~~~Y~~lL~~LI 118 (133)
..++|..++.++-..+.. +.-+|..|..+ ..++
T Consensus 102 y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v-~~~~ 138 (198)
T 2dm9_A 102 YFESVKALLKEAIKELNEKKVRVMSNEKTLGLI-ASRI 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHH-HHTH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHH-HHHH
Confidence 357788888888777632 34455544433 4443
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=38.86 E-value=1.1e+02 Score=22.15 Aligned_cols=90 Identities=19% Similarity=0.111 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH--------hhhHHHHHHHH
Q 032818 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSM--------QLNASRIKVLQ 83 (133)
Q Consensus 12 ~M~~FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~--------~~N~~RLkvL~ 83 (133)
.=.+-|..+|+.+|++|-..|.++-.-.+..........+...+++....+.+..+..... +.+.++-++..
T Consensus 13 ~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~ 92 (187)
T 3v6i_A 13 AEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEA 92 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678888888888888888888888888888777777777777777766665554433 33444444332
Q ss_pred H-----HHHHHHHHHHHHHHHHH
Q 032818 84 A-----QDDLVSNMMEAASKEVL 101 (133)
Q Consensus 84 a-----r~~~l~~l~~ea~~kL~ 101 (133)
- ..++|..++.+|-..|.
T Consensus 93 ~~~~~~Y~~~L~~Li~ea~~~l~ 115 (187)
T 3v6i_A 93 LPQKPEWPEVVRKLALEALEALP 115 (187)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hhCCccHHHHHHHHHHHHHHHcC
Confidence 2 45788888888877664
No 8
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=35.95 E-value=1.6e+02 Score=23.17 Aligned_cols=73 Identities=8% Similarity=0.205 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhh
Q 032818 2 NDADVSKQIQQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75 (133)
Q Consensus 2 ~d~~v~~qi~~M~~FI~qEA~EKA-~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N 75 (133)
|+.+.++-+++.++|+.+.+..-. .+|...-...=...+. -+..+.......++.++.+++-.-+|+.+.-++
T Consensus 129 t~~~A~~lL~~YI~fv~~~~~~~l~~~l~~~i~~r~~~l~~-qi~~~~~~ak~~~~~~I~rL~~AL~IA~aagI~ 202 (280)
T 3b8m_A 129 TSEEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFEKE-KLAQDRIKMKNQLDANIQRLNYSLDIANAAGIK 202 (280)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 578899999999999999998877 6776655533222233 344556677888889999999999998885443
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=31.85 E-value=83 Score=18.72 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032818 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (133)
Q Consensus 16 FI~qEA~EKA~EI~~kA~EEf~iEK~~lV~~ek~kI~~~y 55 (133)
.|..+|+..+..|...+..+-.-|-.+++.+-+..|..+-
T Consensus 13 ~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek 52 (61)
T 1l2p_A 13 VIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAER 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555555554443
No 10
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=28.72 E-value=94 Score=20.09 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=41.0
Q ss_pred HhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHHH
Q 032818 70 YSMQLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQAERA 124 (133)
Q Consensus 70 ~S~~~N~~RLkvL~ar~~~-l~~l~~ea~~kL~~-~~~d~~~Y~~lL~~LI~Qgl~~ 124 (133)
+...+..+=.++|++|-.+ -++|+.++-..|.. ...++...+.-+..||-.+.+.
T Consensus 8 R~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~ 64 (77)
T 3tdu_C 8 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred hhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhh
Confidence 4456777778999998544 45677777777764 6778888999999999876554
No 11
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=25.97 E-value=2.3e+02 Score=21.90 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHH
Q 032818 2 NDADVSKQIQQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR 78 (133)
Q Consensus 2 ~d~~v~~qi~~M~~FI~qEA~EKA-~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~~R 78 (133)
|+.+.++-+++-++|+.+.+..-. .+|...-...=...+. -+..+.......++.++.+++-.-+|+.+.-+++--
T Consensus 114 t~~~A~~lL~~YI~~v~~~~~~~l~~~l~~~~~~r~~~l~~-qi~~~~~~ak~~~~~~i~rl~~AL~IA~aagI~kP~ 190 (265)
T 3b8o_A 114 TAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKA-QVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISRSA 190 (265)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 578899999999999999988776 5666555432222222 345555667788888999888888888776654443
No 12
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=23.69 E-value=2.7e+02 Score=21.84 Aligned_cols=74 Identities=4% Similarity=0.087 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhH
Q 032818 2 NDADVSKQIQQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNA 76 (133)
Q Consensus 2 ~d~~v~~qi~~M~~FI~qEA~EKA-~EI~~kA~EEf~iEK~~lV~~ek~kI~~~yekK~Kq~e~~kkI~~S~~~N~ 76 (133)
|+.+.++-+++.++|+.+.+..-. .+|...-...-.-. ..-+..........++.++..++-.-+|+.+.-+++
T Consensus 95 ta~~Aq~lL~~YI~fv~~~v~~el~~~l~~~i~~r~~~l-~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aaGI~k 169 (248)
T 4e29_A 95 TAEGAQMKLAQYIQQVDDKVNQELERDLKDNIALGRKNL-QDSLRTQEVVAQEQKDLRIRQIEEALRYADEAKITQ 169 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 567889999999999998876543 34444333322222 223455666778888888888888888887655544
No 13
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=23.62 E-value=1.3e+02 Score=20.01 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=40.4
Q ss_pred HhHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHHH
Q 032818 70 YSMQLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQAERA 124 (133)
Q Consensus 70 ~S~~~N~~RLkvL~ar~~~-l~~l~~ea~~kL~~-~~~d~~~Y~~lL~~LI~Qgl~~ 124 (133)
+...+.++=.++|++|-.+ -++|+.++-..|.. ...++...+.-+..||-.+.+.
T Consensus 20 R~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYle 76 (88)
T 3o2p_E 20 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQ 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHh
Confidence 4456778888999998543 34566666667763 6778888999999999876554
Done!