BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032819
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 43 GVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF 102
GV+ GC+G++Y L + DE + D V EDKGVK+++D K+L + GT++DFV + L F
Sbjct: 29 GVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGF 88
Query: 103 VFINPNSKGQCGCGESF 119
F NPN K +CGCGESF
Sbjct: 89 KFTNPNVKDECGCGESF 105
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 43 GVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF 102
GV+ GC+G++Y L + DE + D V EDKGVK+++D K++ + GT++DFV + L F
Sbjct: 29 GVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKEGLNEGF 88
Query: 103 VFINPNSKGQCGCGESF 119
F NPN K +CGCGESF
Sbjct: 89 KFTNPNVKDECGCGESF 105
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 16 QALTLTESAA-EXXXXXXXXXXXXXXXXGVKARGCNGLSYTLNYADEKSKFDEVVEDKGV 74
Q LTLT +AA GVK GC G Y L+ E K D + E G
Sbjct: 39 QGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGA 98
Query: 75 KILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 119
K+ + +A+ + GT++DFV + L F F NP ++ +CGCGESF
Sbjct: 99 KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF 143
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 48 GCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINP 107
GC+G Y + + D + D V E GVK++IDP ++ +V G ++D+V D + F NP
Sbjct: 42 GCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101
Query: 108 NSKGQCGCGESF 119
N+ G CGCG SF
Sbjct: 102 NATGSCGCGSSF 113
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 44 VKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFV 103
+ GC+G Y + ++ + D +E GV+++IDP +L ++IG +D+ + S F
Sbjct: 37 ITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFT 96
Query: 104 FINPNSKGQCGCGESF 119
NPN+ CGCG SF
Sbjct: 97 VNNPNATSTCGCGSSF 112
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 44 VKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFV 103
V+ C Y L E D + + +G I I +A + G ++D+++D + F
Sbjct: 32 VQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVDYIEDLMGGAFR 91
Query: 104 FINPNSKGQCGCGESFMTTSS 124
F NPN+ CGCG +F + S
Sbjct: 92 FHNPNASQTCGCGMAFRVSRS 112
>pdb|2K4Z|A Chain A, Solution Nmr Structure Of Allochromatium Vinosum Dsrr:
Northeast Structural Genomics Consortium Target Op5
Length = 125
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 60 DEKSKFDEVVED------KGVKILIDPKALMHVIGTKMDFVD-DKLRSEFVFINP 107
D + FD++ ED +GV+I+I P + + T +D+V+ + + F+F+NP
Sbjct: 60 DYRMGFDDLTEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNP 114
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 91 MDFVDDKLRSEFVFINPN-SKGQCGCGESF 119
+ V +KL+S+FV+IN SK +C CG+ F
Sbjct: 122 LPVVKNKLKSKFVYINDVLSKQKCVCGDHF 151
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 44 VKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKM 91
++A G + + E SKF E +E +GV + PK + +G K+
Sbjct: 70 IRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKI 117
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 110 KGQCGCGESFMTTSSAE---AAKRGR 132
+GQCG SF TT + E A +RGR
Sbjct: 133 QGQCGSSWSFSTTGAVEGQLALQRGR 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,087,314
Number of Sequences: 62578
Number of extensions: 101901
Number of successful extensions: 212
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 13
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)