Query 032819
Match_columns 133
No_of_seqs 126 out of 1092
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0316 sufA Fe-S cluster asse 100.0 1.4E-37 3.1E-42 216.6 13.3 107 15-121 2-110 (110)
2 PRK13623 iron-sulfur cluster i 100.0 1.6E-37 3.4E-42 217.8 13.3 109 13-121 5-115 (115)
3 PRK09502 iscA iron-sulfur clus 100.0 3.4E-37 7.5E-42 213.8 12.8 106 16-121 1-107 (107)
4 PRK09504 sufA iron-sulfur clus 100.0 1.4E-36 3.1E-41 215.3 13.2 110 12-121 12-122 (122)
5 PLN03082 Iron-sulfur cluster a 100.0 1.4E-36 3.1E-41 224.6 13.2 109 14-122 51-163 (163)
6 TIGR01997 sufA_proteo FeS asse 100.0 9.6E-36 2.1E-40 206.5 13.1 105 17-121 2-107 (107)
7 TIGR02011 IscA iron-sulfur clu 100.0 8.2E-36 1.8E-40 206.2 12.5 104 18-121 1-105 (105)
8 TIGR00049 Iron-sulfur cluster 100.0 1.6E-34 3.4E-39 198.9 12.4 103 19-121 1-105 (105)
9 KOG1120 Fe-S cluster biosynthe 100.0 1.6E-30 3.6E-35 182.8 10.1 114 8-121 20-134 (134)
10 KOG1119 Mitochondrial Fe-S clu 100.0 4.8E-28 1E-32 179.7 10.2 106 16-122 92-198 (199)
11 PRK11190 Fe/S biogenesis prote 99.9 2.6E-26 5.6E-31 173.9 12.5 95 17-111 1-98 (192)
12 TIGR01911 HesB_rel_seleno HesB 99.9 3.6E-26 7.8E-31 154.9 10.5 89 16-105 2-92 (92)
13 TIGR03341 YhgI_GntY IscR-regul 99.9 3.7E-25 8E-30 167.4 12.2 94 18-111 1-97 (190)
14 PF01521 Fe-S_biosyn: Iron-sul 99.9 1.7E-25 3.7E-30 155.2 9.2 101 16-117 1-112 (112)
15 COG4841 Uncharacterized protei 99.8 1E-18 2.2E-23 116.1 7.5 88 16-104 1-94 (95)
16 COG4918 Uncharacterized protei 99.0 4.2E-10 9.1E-15 76.9 5.5 82 16-97 1-86 (114)
17 COG3564 Uncharacterized protei 97.7 0.00041 8.9E-09 47.5 8.4 91 15-109 4-100 (116)
18 PF05610 DUF779: Protein of un 97.0 0.0045 9.7E-08 42.1 6.9 68 42-110 14-87 (95)
19 cd01234 PH_CADPS CADPS (Ca2+-d 75.0 2.3 5E-05 29.7 1.9 38 79-123 45-82 (117)
20 cd03063 TRX_Fd_FDH_beta TRX-li 52.5 23 0.00049 23.8 3.4 28 23-53 18-45 (92)
21 KOG3348 BolA (bacterial stress 49.6 43 0.00093 22.3 4.2 37 24-61 4-41 (85)
22 COG4647 AcxC Acetone carboxyla 45.9 12 0.00025 27.2 1.2 20 102-121 61-81 (165)
23 COG5134 Uncharacterized conser 40.0 74 0.0016 25.1 4.8 53 26-81 59-114 (272)
24 COG0608 RecJ Single-stranded D 39.2 1E+02 0.0023 26.3 6.2 99 20-120 21-157 (491)
25 PF10571 UPF0547: Uncharacteri 37.3 20 0.00042 18.4 0.9 14 107-120 11-25 (26)
26 KOG4777 Aspartate-semialdehyde 37.0 35 0.00075 27.8 2.7 39 71-109 114-152 (361)
27 PF03852 Vsr: DNA mismatch end 33.2 43 0.00093 21.8 2.2 59 20-81 4-65 (75)
28 PF11858 DUF3378: Domain of un 33.2 64 0.0014 21.0 3.1 35 16-50 3-41 (81)
29 PF07610 DUF1573: Protein of u 33.1 21 0.00045 20.4 0.7 17 100-118 10-26 (45)
30 PF04019 DUF359: Protein of un 33.1 73 0.0016 22.4 3.6 30 16-47 42-71 (121)
31 COG5014 Predicted Fe-S oxidore 32.4 56 0.0012 25.1 3.1 64 21-88 76-142 (228)
32 COG3369 Zinc finger domain con 30.2 24 0.00053 23.1 0.7 16 111-126 32-47 (78)
33 PRK01160 hypothetical protein; 27.9 91 0.002 23.5 3.6 32 16-47 92-124 (178)
34 PF13719 zinc_ribbon_5: zinc-r 26.0 19 0.00041 19.8 -0.3 20 112-131 4-24 (37)
35 COG1909 Uncharacterized protei 25.6 97 0.0021 23.2 3.3 30 16-47 87-116 (167)
36 KOG1085 Predicted methyltransf 24.3 2.5E+02 0.0053 23.3 5.6 66 12-82 230-296 (392)
37 PF09360 zf-CDGSH: Iron-bindin 24.1 38 0.00082 18.9 0.7 13 111-123 20-32 (38)
38 PRK01194 V-type ATP synthase s 24.0 80 0.0017 23.5 2.7 39 72-110 119-157 (185)
39 KOG3214 Uncharacterized Zn rib 24.0 21 0.00046 24.6 -0.4 17 111-127 48-65 (109)
40 COG3031 PulC Type II secretory 23.2 2.3E+02 0.005 22.8 5.1 73 3-77 155-240 (275)
41 PF11146 DUF2905: Protein of u 22.7 1.1E+02 0.0024 19.2 2.7 19 62-80 29-47 (64)
42 PF13177 DNA_pol3_delta2: DNA 20.8 1.8E+02 0.0038 20.9 3.9 20 19-38 113-132 (162)
43 PF06170 DUF983: Protein of un 20.2 71 0.0015 21.1 1.5 16 110-125 8-24 (86)
No 1
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=216.55 Aligned_cols=107 Identities=47% Similarity=0.824 Sum_probs=102.5
Q ss_pred CcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEE
Q 032819 15 RQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMD 92 (133)
Q Consensus 15 ~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ID 92 (133)
.++|+|||+|++++++++++++ +.+|||+|+.+||+|++|.|.|++++.++|.+++.+|++|+||+.++.||.|++||
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID 81 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID 81 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence 5899999999999999999873 45899999999999999999999989999999999999999999999999999999
Q ss_pred eEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 93 FVDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 93 y~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
|+++..+++|+|+|||++..||||+||+.
T Consensus 82 yv~~~~g~~F~~~NPNA~~~CgCg~Sf~v 110 (110)
T COG0316 82 YVEDLLGSGFTFKNPNAKSSCGCGESFSV 110 (110)
T ss_pred EEEcCcCCceEEECCCCCccccCCCCCCC
Confidence 99999999999999999999999999974
No 2
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=100.00 E-value=1.6e-37 Score=217.81 Aligned_cols=109 Identities=31% Similarity=0.657 Sum_probs=102.1
Q ss_pred ccCcceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819 13 IRRQALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK 90 (133)
Q Consensus 13 ~~~~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ 90 (133)
...|+|+||++|+++|+++++.++. .+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++
T Consensus 5 ~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~ 84 (115)
T PRK13623 5 DVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAE 84 (115)
T ss_pred ccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCE
Confidence 4569999999999999999976543 46999999999999999999998889999999999999999999999999999
Q ss_pred EEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 91 MDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 91 IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
|||+++..+++|+|.|||++++||||+||++
T Consensus 85 IDy~~~~~~~~F~f~NPn~~~~CgCg~SF~~ 115 (115)
T PRK13623 85 VDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI 115 (115)
T ss_pred EEeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence 9999999999999999999999999999974
No 3
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=213.81 Aligned_cols=106 Identities=47% Similarity=0.845 Sum_probs=100.0
Q ss_pred cceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819 16 QALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV 94 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~ 94 (133)
|+|+|||+|+++|+++++.++. .+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~ 80 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence 6799999999999999986543 469999999999999999999888999999999999999999999999999999999
Q ss_pred eCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 95 DDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 95 e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
+++.+++|+|.|||++++||||+||+.
T Consensus 81 ~~~~~~~F~f~NPna~~~CgCG~Sf~~ 107 (107)
T PRK09502 81 KEGLNEGFKFTNPNVKDECGCGESFHV 107 (107)
T ss_pred eCCCCceEEEECCCCCCccCCCCCeeC
Confidence 999999999999999999999999974
No 4
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=215.33 Aligned_cols=110 Identities=39% Similarity=0.687 Sum_probs=103.2
Q ss_pred cccCcceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819 12 AIRRQALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK 90 (133)
Q Consensus 12 ~~~~~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ 90 (133)
..++|+|+|||+|+++|+++++.++. .+|||.|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++
T Consensus 12 ~~~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~ 91 (122)
T PRK09504 12 DFAWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE 91 (122)
T ss_pred cCCcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence 44579999999999999999987653 47999999999999999999998999999999999999999999999999999
Q ss_pred EEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 91 MDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 91 IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
|||+++..+++|+|.|||++++||||+||++
T Consensus 92 IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v 122 (122)
T PRK09504 92 VDYVREGLNQIFKFHNPKAQNECGCGESFGV 122 (122)
T ss_pred EEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence 9999999999999999999999999999974
No 5
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=100.00 E-value=1.4e-36 Score=224.65 Aligned_cols=109 Identities=34% Similarity=0.671 Sum_probs=102.0
Q ss_pred cCcceeeCHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcE
Q 032819 14 RRQALTLTESAAERLRQLLEQRQ---RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTK 90 (133)
Q Consensus 14 ~~~~I~IT~~A~~~l~~~l~~~~---~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ 90 (133)
..+.|+|||+|+++|+++++.++ ..+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++
T Consensus 51 ~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~ 130 (163)
T PLN03082 51 SLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGAT 130 (163)
T ss_pred cCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCE
Confidence 34689999999999999998764 257999999999999999999998888999999999999999999999999999
Q ss_pred EEeEeCCCCcceEE-ECCCCCCCCCCCCCcCCC
Q 032819 91 MDFVDDKLRSEFVF-INPNSKGQCGCGESFMTT 122 (133)
Q Consensus 91 IDy~e~~~~~gF~i-~nP~~~~~C~CG~Sf~~~ 122 (133)
|||++++.+++|+| .|||+.+.||||+||++|
T Consensus 131 IDYve~l~~~gF~f~~NPna~~~CgCG~SF~vk 163 (163)
T PLN03082 131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163 (163)
T ss_pred EEeecCCCCCeeEEecCCCCCCCcCCCCCEeCC
Confidence 99999999999999 999999999999999874
No 6
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=100.00 E-value=9.6e-36 Score=206.48 Aligned_cols=105 Identities=43% Similarity=0.837 Sum_probs=99.6
Q ss_pred ceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEe
Q 032819 17 ALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVD 95 (133)
Q Consensus 17 ~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e 95 (133)
+|+|||+|+++|++++++++. .+|||+|+.+||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++
T Consensus 2 ~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~ 81 (107)
T TIGR01997 2 VITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFVR 81 (107)
T ss_pred eEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEEE
Confidence 699999999999999987653 4799999999999999999998889999999999999999999999999999999999
Q ss_pred CCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 96 DKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 96 ~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
+..+++|+|.|||+++.||||+||+.
T Consensus 82 ~~~~~~F~~~NPn~~~~CgCG~Sf~~ 107 (107)
T TIGR01997 82 TTLRQGFKFNNPNATSACGCGESFEL 107 (107)
T ss_pred cCCcceEEEECCCCCCccCCCCCccC
Confidence 99999999999999999999999973
No 7
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=100.00 E-value=8.2e-36 Score=206.20 Aligned_cols=104 Identities=52% Similarity=0.863 Sum_probs=98.6
Q ss_pred eeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEeC
Q 032819 18 LTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDD 96 (133)
Q Consensus 18 I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e~ 96 (133)
|+|||+|+++|++++++++. .+|||+|+.+||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+++
T Consensus 1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~ 80 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE 80 (105)
T ss_pred CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence 68999999999999987643 57999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCcceEEECCCCCCCCCCCCCcCC
Q 032819 97 KLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 97 ~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
..+++|+|.|||++++||||+||++
T Consensus 81 ~~~~~F~~~nPna~~~CgCg~Sf~~ 105 (105)
T TIGR02011 81 GLNEGFKFTNPNVKDECGCGESFHV 105 (105)
T ss_pred CCcceEEEECCCCCccCCCCCCccC
Confidence 9999999999999999999999974
No 8
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=100.00 E-value=1.6e-34 Score=198.93 Aligned_cols=103 Identities=50% Similarity=0.884 Sum_probs=97.8
Q ss_pred eeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEeC
Q 032819 19 TLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDD 96 (133)
Q Consensus 19 ~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e~ 96 (133)
+|||+|++||++++++++. .+|||+++.+||+|++|.|.|+++++++|.+++.+|++|+||+.+++||+|++|||.++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~ 80 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE 80 (105)
T ss_pred CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence 6999999999999988764 58999999999999999999987788999999999999999999999999999999999
Q ss_pred CCCcceEEECCCCCCCCCCCCCcCC
Q 032819 97 KLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 97 ~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
..+++|+|.|||+.++||||+||++
T Consensus 81 ~~~~~f~i~nPn~~~~c~cg~sf~~ 105 (105)
T TIGR00049 81 LLGSGFTFTNPNAKGTCGCGKSFSV 105 (105)
T ss_pred CCcceEEEECCCCCccCCCCcCccC
Confidence 9999999999999999999999974
No 9
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=182.78 Aligned_cols=114 Identities=62% Similarity=1.026 Sum_probs=106.2
Q ss_pred CCCCcccCcceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhcc
Q 032819 8 KVGPAIRRQALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHV 86 (133)
Q Consensus 8 ~~~~~~~~~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L 86 (133)
....++.+.-|++||.|+++|++++++++ ...|||.|+..||+|++|.|.+..++...|++++.+|++|+||+.++-.|
T Consensus 20 ~~~~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~l 99 (134)
T KOG1120|consen 20 ARKLAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTL 99 (134)
T ss_pred cccccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeee
Confidence 34456667999999999999999999765 57899999999999999999999888899999999999999999999999
Q ss_pred CCcEEEeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 87 IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 87 ~g~~IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
-|+++||+++.++++|+|.|||+++.||||.||+.
T Consensus 100 iGteMDyvddkL~Sefvf~npna~gtcGcgeSf~~ 134 (134)
T KOG1120|consen 100 IGTEMDYVDDKLSSEFVFSNPNAKGTCGCGESFSV 134 (134)
T ss_pred ccceehhhhhhhcCceEeeCCCccccccccccccC
Confidence 99999999999999999999999999999999974
No 10
>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-28 Score=179.67 Aligned_cols=106 Identities=31% Similarity=0.653 Sum_probs=100.4
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeEe
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVD 95 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~e 95 (133)
..++|++.|.++++++.+..+ ..|||.|++|||+||+|.|.||....++|.+++-+|.+|+||..++.|++|++|||.+
T Consensus 92 ~~~~lsds~~krl~EI~~~~p-e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ 170 (199)
T KOG1119|consen 92 FNLHLSDSCSKRLKEIYENSP-EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTN 170 (199)
T ss_pred ceEEehhHHHHHHHHHHhCCc-ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHH
Confidence 679999999999999988765 6899999999999999999999888899999999999999999999999999999999
Q ss_pred CCCCcceEE-ECCCCCCCCCCCCCcCCC
Q 032819 96 DKLRSEFVF-INPNSKGQCGCGESFMTT 122 (133)
Q Consensus 96 ~~~~~gF~i-~nP~~~~~C~CG~Sf~~~ 122 (133)
++.++.|+| .||.++.+||||+||+++
T Consensus 171 ELIrSsF~ivnNP~A~~gCsCgSSF~ik 198 (199)
T KOG1119|consen 171 ELIRSSFRIVNNPSAKQGCSCGSSFDIK 198 (199)
T ss_pred HHhhhhheeecCcccccCCCCCcccccC
Confidence 999999987 689999999999999986
No 11
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.94 E-value=2.6e-26 Score=173.93 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=89.1
Q ss_pred ceeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeee--cccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819 17 ALTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNY--ADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF 93 (133)
Q Consensus 17 ~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy 93 (133)
||+|||+|+++|++++++++. .+|||+|+++||+|++|+|.+ ++++.++|.+++.+|++|+||+.++.||+|++|||
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy 80 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF 80 (192)
T ss_pred CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence 689999999999999987653 479999999999999999999 67788999999999999999999999999999999
Q ss_pred EeCCCCcceEEECCCCCC
Q 032819 94 VDDKLRSEFVFINPNSKG 111 (133)
Q Consensus 94 ~e~~~~~gF~i~nP~~~~ 111 (133)
+++..+++|+|.|||++.
T Consensus 81 ve~~~g~gF~f~NPNa~~ 98 (192)
T PRK11190 81 VTDQLGSQLTLKAPNAKM 98 (192)
T ss_pred eecCCCCceEEECCCCCC
Confidence 999999999999999975
No 12
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.94 E-value=3.6e-26 Score=154.90 Aligned_cols=89 Identities=17% Similarity=0.366 Sum_probs=82.8
Q ss_pred cceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819 16 QALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF 93 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy 93 (133)
.||+|||+|+++|++++++++. .+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.++.||.|++|||
T Consensus 2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy 80 (92)
T TIGR01911 2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC 80 (92)
T ss_pred CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence 5899999999999999987654 36999999999999999999976 58999999999999999999999999999999
Q ss_pred EeCCCCcceEEE
Q 032819 94 VDDKLRSEFVFI 105 (133)
Q Consensus 94 ~e~~~~~gF~i~ 105 (133)
+++..+++|+|+
T Consensus 81 ~~~~~g~gF~~~ 92 (92)
T TIGR01911 81 AEENFGAGFSLD 92 (92)
T ss_pred ecCCCCCcEEeC
Confidence 999999999984
No 13
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.93 E-value=3.7e-25 Score=167.43 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=87.6
Q ss_pred eeeCHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeee--cccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819 18 LTLTESAAERLRQLLEQRQR-PFLRLGVKARGCNGLSYTLNY--ADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV 94 (133)
Q Consensus 18 I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~GC~G~~~~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~ 94 (133)
|+|||+|+++|+++++.++. .+|||+|+++||+|++|+|.+ ++++.++|.+++.+|++|+||+.++.||+|++|||+
T Consensus 1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv 80 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV 80 (190)
T ss_pred CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence 68999999999999987653 479999999999999999999 567789999999999999999999999999999999
Q ss_pred eCCCCcceEEECCCCCC
Q 032819 95 DDKLRSEFVFINPNSKG 111 (133)
Q Consensus 95 e~~~~~gF~i~nP~~~~ 111 (133)
++..+++|+|.|||++.
T Consensus 81 e~~~g~gF~f~NPna~~ 97 (190)
T TIGR03341 81 TDRMGGQLTLKAPNAKM 97 (190)
T ss_pred ecCCCceeEEeCCccCC
Confidence 99999999999999964
No 14
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.93 E-value=1.7e-25 Score=155.21 Aligned_cols=101 Identities=40% Similarity=0.701 Sum_probs=93.9
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCC--------CC-CceeeeeecccC-CCCCEEEEeCCeEEEEcccchhc
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARG--------CN-GLSYTLNYADEK-SKFDEVVEDKGVKILIDPKALMH 85 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~G--------C~-G~~~~l~l~~~~-~~~D~v~~~~gi~v~id~~~~~~ 85 (133)
|.|+|||+|+++|++++.+++.. |||+++.+| |+ |++|.|.+++++ .+.|.+++.++++|+|++.+++|
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~ 79 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDPKK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWY 79 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTTES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHH
T ss_pred CEEEECHHHHHHHHHHHhcCCCE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhh
Confidence 89999999999999999988755 999999998 99 999999999877 79999999999999999999999
Q ss_pred c-CCcEEEeEeCCCCcceEEECCCCCCCCCCCC
Q 032819 86 V-IGTKMDFVDDKLRSEFVFINPNSKGQCGCGE 117 (133)
Q Consensus 86 L-~g~~IDy~e~~~~~gF~i~nP~~~~~C~CG~ 117 (133)
| ++++|||.++..+.+|++.||+..+.|+||.
T Consensus 80 l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~ 112 (112)
T PF01521_consen 80 LDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD 112 (112)
T ss_dssp H-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred hhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence 9 8999999999999999999999999999984
No 15
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=1e-18 Score=116.07 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=75.3
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCC----CceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCC--c
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARGCN----GLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIG--T 89 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~----G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g--~ 89 (133)
|+|+||+.|++|+++.+....+..||++|+.|||+ ||+.++..+ .|++--...+.+|++|+|...++||+++ +
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~ 79 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDL 79 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCCcE
Confidence 89999999999999999999889999999999998 544544432 4666556678999999999999999997 9
Q ss_pred EEEeEeCCCCcceEE
Q 032819 90 KMDFVDDKLRSEFVF 104 (133)
Q Consensus 90 ~IDy~e~~~~~gF~i 104 (133)
+|||.++.....|..
T Consensus 80 ~v~y~~~~Dei~fs~ 94 (95)
T COG4841 80 KVDYSPDTDEISFSY 94 (95)
T ss_pred EEeccCCCCcceeec
Confidence 999999888777754
No 16
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=4.2e-10 Score=76.92 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=65.1
Q ss_pred cceeeCHHHHHHHHHHHhcCCC--CcEEEEEecCCCCC-ceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCC-cEE
Q 032819 16 QALTLTESAAERLRQLLEQRQR--PFLRLGVKARGCNG-LSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIG-TKM 91 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~--~~LRi~v~~~GC~G-~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g-~~I 91 (133)
|+|++|+.|+++|+........ ..+|...++.||.| -.+.++++.+....|..++.|+.++||-.....||++ ++|
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti 80 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI 80 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence 7899999999999988876543 34554444555543 2567777777778999999999999999999999985 999
Q ss_pred EeEeCC
Q 032819 92 DFVDDK 97 (133)
Q Consensus 92 Dy~e~~ 97 (133)
||.+..
T Consensus 81 dyN~~~ 86 (114)
T COG4918 81 DYNPSY 86 (114)
T ss_pred ecCCcc
Confidence 999764
No 17
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00041 Score=47.45 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=63.5
Q ss_pred CcceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeec--c-cCCCCCEEE-EeCCeEEEEcccchhccC--C
Q 032819 15 RQALTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYA--D-EKSKFDEVV-EDKGVKILIDPKALMHVI--G 88 (133)
Q Consensus 15 ~~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~~~l~l~--~-~~~~~D~v~-~~~gi~v~id~~~~~~L~--g 88 (133)
...++.|++|++-|.++..+.+. -+|-+++||+.-+--|-.- + -..++|+.+ +++|++|||...+..+-+ .
T Consensus 4 ~~~V~aT~aAl~Li~~l~~~hgp---vmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTq 80 (116)
T COG3564 4 PARVLATPAALDLIAELQAEHGP---VMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQ 80 (116)
T ss_pred CcceecCHHHHHHHHHHHHhcCC---EEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccE
Confidence 45689999999999988887652 3555788886222222221 0 124567766 789999999999987777 5
Q ss_pred cEEEeEeCCCCcceEEECCCC
Q 032819 89 TKMDFVDDKLRSEFVFINPNS 109 (133)
Q Consensus 89 ~~IDy~e~~~~~gF~i~nP~~ 109 (133)
+.||.++. .+..|.+.|-..
T Consensus 81 LIIDVVpG-RGGmFSLdng~E 100 (116)
T COG3564 81 LIIDVVPG-RGGMFSLDNGRE 100 (116)
T ss_pred EEEEEecC-CCceeEccCCcc
Confidence 99999865 566788876443
No 18
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=97.00 E-value=0.0045 Score=42.06 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=49.0
Q ss_pred EEEecCCCCCceeeeeec--c-cCCCCCEEE-EeCCeEEEEcccchhccCC--cEEEeEeCCCCcceEEECCCCC
Q 032819 42 LGVKARGCNGLSYTLNYA--D-EKSKFDEVV-EDKGVKILIDPKALMHVIG--TKMDFVDDKLRSEFVFINPNSK 110 (133)
Q Consensus 42 i~v~~~GC~G~~~~l~l~--~-~~~~~D~v~-~~~gi~v~id~~~~~~L~g--~~IDy~e~~~~~gF~i~nP~~~ 110 (133)
+|-.++||+.-+-=|-+. + ...+.|+.+ ++.|++|+|++++..|.+. ++||.++ ..+.+|.+.+|...
T Consensus 14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G~ 87 (95)
T PF05610_consen 14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEGK 87 (95)
T ss_pred EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCCc
Confidence 455788987223222221 1 124667766 7899999999999999995 9999887 46788999988754
No 19
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.96 E-value=2.3 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=25.7
Q ss_pred cccchhccCCcEEEeEeCCCCcceEEECCCCCCCCCCCCCcCCCC
Q 032819 79 DPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTS 123 (133)
Q Consensus 79 d~~~~~~L~g~~IDy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~ 123 (133)
+|.....|+|-||||.+...+ ||+..-.|. |..|-|+.
T Consensus 45 ~P~e~~qldGyTvDy~~~~~~------~~~~~~~~~-gg~~ff~a 82 (117)
T cd01234 45 EPTEFIQLDGYTVDYMPESDP------DPNSELSLQ-GGRHFFNA 82 (117)
T ss_pred CchhheeecceEEeccCCCCC------Ccccccccc-cchhhhhe
Confidence 566677899999999965432 666666666 55555544
No 20
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=52.53 E-value=23 Score=23.75 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCCCCce
Q 032819 23 SAAERLRQLLEQRQRPFLRLGVKARGCNGLS 53 (133)
Q Consensus 23 ~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~ 53 (133)
+-.+.|++.+++++ |++.+...||.||=
T Consensus 18 ~V~~al~~ei~~~g---l~v~v~~tGC~G~C 45 (92)
T cd03063 18 EVAEAIEAEAAARG---LAATIVRNGSRGMY 45 (92)
T ss_pred HHHHHHHHHHHHcC---CeEEEEEecCceec
Confidence 44566677777655 37788888998853
No 21
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=49.61 E-value=43 Score=22.29 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeeccc
Q 032819 24 AAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADE 61 (133)
Q Consensus 24 A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~ 61 (133)
..++|+++|.+.= -..|++.=..+||++ .|.+.+.++
T Consensus 4 ~e~~l~~~L~~~l~p~~v~V~D~SgGCG~-~F~v~IvS~ 41 (85)
T KOG3348|consen 4 TEERLEELLTEALEPEHVEVQDVSGGCGS-MFDVVIVSA 41 (85)
T ss_pred hHHHHHHHHHhhcCceEEEEEEcCCCccc-eEEEEEEcc
Confidence 4677888887653 235666656889965 788777643
No 22
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.89 E-value=12 Score=27.22 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=13.4
Q ss_pred eEEECCCCC-CCCCCCCCcCC
Q 032819 102 FVFINPNSK-GQCGCGESFMT 121 (133)
Q Consensus 102 F~i~nP~~~-~~C~CG~Sf~~ 121 (133)
|+..+|... .-|.||.||.-
T Consensus 61 fi~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEEecccccEEEEeccccccC
Confidence 444455443 58999999973
No 23
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=39.95 E-value=74 Score=25.06 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHhcCC---CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEccc
Q 032819 26 ERLRQLLEQRQ---RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPK 81 (133)
Q Consensus 26 ~~l~~~l~~~~---~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~ 81 (133)
...++++.+.. ....|+.+.-.||+. ...+.- .|..+|.|++.+|++=+..+.
T Consensus 59 NavkE~~~dK~y~~~kiYRf~I~C~~C~n-~i~~RT--DPkN~~YV~EsGg~R~i~pq~ 114 (272)
T COG5134 59 NAVKEEIGDKSYYTTKIYRFSIKCHLCSN-PIDVRT--DPKNTEYVVESGGRRKIEPQD 114 (272)
T ss_pred hHHHHHhcccccceeEEEEEEEEccCCCC-ceeeec--CCCCceEEEecCceeecCccc
Confidence 34566666543 346789999889975 345543 478899999999998655443
No 24
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=39.20 E-value=1e+02 Score=26.33 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=54.5
Q ss_pred eCHHHHHHHHHHHhcCCCCcEEEEEecCCCC--------------CceeeeeecccCCCCC-----EEEEeCCeEEEEcc
Q 032819 20 LTESAAERLRQLLEQRQRPFLRLGVKARGCN--------------GLSYTLNYADEKSKFD-----EVVEDKGVKILIDP 80 (133)
Q Consensus 20 IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~--------------G~~~~l~l~~~~~~~D-----~v~~~~gi~v~id~ 80 (133)
=-++|++.+.+.+.+.+ .|+|+......+ |+.+.+.+.....++. ...+..++-+++|-
T Consensus 21 ~~~~a~~~i~~ai~~~~--~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liItvD~ 98 (491)
T COG0608 21 DMEKAAARIAEAIEKGE--KILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLIITVDN 98 (491)
T ss_pred hHHHHHHHHHHHHHcCC--EEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEEEECC
Confidence 33567777777766544 578876643322 5556666544333332 12233446666664
Q ss_pred cc-----hhc-----cCCcEEEeEeCCCC--cceEEECCCCC-------CCCCCCCCcC
Q 032819 81 KA-----LMH-----VIGTKMDFVDDKLR--SEFVFINPNSK-------GQCGCGESFM 120 (133)
Q Consensus 81 ~~-----~~~-----L~g~~IDy~e~~~~--~gF~i~nP~~~-------~~C~CG~Sf~ 120 (133)
-+ ..+ ++=+++|+...... ....+.||+.. ..||||.+|-
T Consensus 99 G~~~~~~i~~~~~~g~~vIVtDHH~~~~~~p~~~~ivNP~~~~~~~~~~~lag~gv~f~ 157 (491)
T COG0608 99 GSGSLEEIARAKELGIDVIVTDHHPPGEELPDAVAIVNPNLPGCDYPFKELAGVGVAFK 157 (491)
T ss_pred CcccHHHHHHHHhCCCcEEEECCCCCCCCCCCceEEECCCCCCCCCCchhhhhhhHHHH
Confidence 32 233 33378888832221 24688999874 3567777664
No 25
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.26 E-value=20 Score=18.45 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=10.2
Q ss_pred CCCCCCCC-CCCCcC
Q 032819 107 PNSKGQCG-CGESFM 120 (133)
Q Consensus 107 P~~~~~C~-CG~Sf~ 120 (133)
|.....|. ||-+|.
T Consensus 11 ~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 11 PESAKFCPHCGYDFE 25 (26)
T ss_pred hhhcCcCCCCCCCCc
Confidence 44456887 999985
No 26
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=37.05 E-value=35 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=34.4
Q ss_pred eCCeEEEEcccchhccCCcEEEeEeCCCCcceEEECCCC
Q 032819 71 DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNS 109 (133)
Q Consensus 71 ~~gi~v~id~~~~~~L~g~~IDy~e~~~~~gF~i~nP~~ 109 (133)
-++++++|..---..|+++.+-..+.-.+.||.|.|||-
T Consensus 114 e~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNC 152 (361)
T KOG4777|consen 114 EDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNC 152 (361)
T ss_pred CCCCceEecccCHHHhhhheeccccCCCCCceEEecCCC
Confidence 368999999988899999998888888899999999885
No 27
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=33.25 E-value=43 Score=21.78 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=30.0
Q ss_pred eCHHHHHHHHHHHhcCCCC---cEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEccc
Q 032819 20 LTESAAERLRQLLEQRQRP---FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPK 81 (133)
Q Consensus 20 IT~~A~~~l~~~l~~~~~~---~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~ 81 (133)
+|++...++..-+...+.+ .||=.+-. .|+.|.+...+-+..-|+++..-.+-||||--
T Consensus 4 ~t~~~RS~~M~~ir~k~TkpE~~lr~~L~~---~G~RyR~~~~~lpG~PDiv~~~~k~aIFVdGC 65 (75)
T PF03852_consen 4 FTPEQRSKNMSRIRSKDTKPELALRRALHA---LGLRYRLNRKDLPGKPDIVFPKYKIAIFVDGC 65 (75)
T ss_dssp S-HHHHHHHHHT--SSS-HHHHHHHHHHHH---TT--EEES-TTSTT--SEEEGGGTEEEEEE-T
T ss_pred CCHHHHHHHHhhccCCCChHHHHHHHHHHh---cCCEEEEccCcCCCCCCEEECCCCEEEEEecc
Confidence 4566666555555544321 12222222 25677776655667779999999999999864
No 28
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=33.15 E-value=64 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=25.3
Q ss_pred cceeeCHHHHHHHHHHHhcC----CCCcEEEEEecCCCC
Q 032819 16 QALTLTESAAERLRQLLEQR----QRPFLRLGVKARGCN 50 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~----~~~~LRi~v~~~GC~ 50 (133)
.-|++|+...+.|+..+... ..++.++..+..||.
T Consensus 3 ~vlkl~~~~i~~l~~~y~~~~~~~~~p~~~f~aK~~~~t 41 (81)
T PF11858_consen 3 IVLKLTSEQIEKLKKYYKPYLTSSKPPYAVFQAKYNGVT 41 (81)
T ss_dssp EEEE--HHHHHHHHHHSTT-B-SS--TTEEEEEEETTEE
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCeE
Confidence 45789999999999998543 136899999999885
No 29
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=33.12 E-value=21 Score=20.39 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=9.8
Q ss_pred cceEEECCCCCCCCCCCCC
Q 032819 100 SEFVFINPNSKGQCGCGES 118 (133)
Q Consensus 100 ~gF~i~nP~~~~~C~CG~S 118 (133)
..++|. +...+|||=..
T Consensus 10 ~~L~I~--~v~tsCgCt~~ 26 (45)
T PF07610_consen 10 SPLVIT--DVQTSCGCTTA 26 (45)
T ss_pred CcEEEE--EeeEccCCEEe
Confidence 344443 34569999554
No 30
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=33.05 E-value=73 Score=22.41 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=23.9
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecC
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKAR 47 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~ 47 (133)
+.=+||+++.+.|++.+.. +...+|+|++.
T Consensus 42 PpG~It~el~~ai~~a~~~--~~~~~I~V~GE 71 (121)
T PF04019_consen 42 PPGTITEELIEAIKKALES--GKPVVIFVDGE 71 (121)
T ss_pred CCCcccHHHHHHHHHHHhC--CCCEEEEEeCh
Confidence 5558999999999999765 45688988764
No 31
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.45 E-value=56 Score=25.08 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCC
Q 032819 21 TESAAERLRQLLEQRQRPFLRLGVKARGCN---GLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIG 88 (133)
Q Consensus 21 T~~A~~~l~~~l~~~~~~~LRi~v~~~GC~---G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g 88 (133)
..+.+++|+++.+..+.+.+||. ||- +...-+.+.+--.+...|++.||+-+=.|++....|-+
T Consensus 76 P~eVaeRL~ei~K~~g~d~vRiS----G~EP~l~~EHvlevIeLl~~~tFvlETNG~~~g~drslv~el~n 142 (228)
T COG5014 76 PEEVAERLLEISKKRGCDLVRIS----GAEPILGREHVLEVIELLVNNTFVLETNGLMFGFDRSLVDELVN 142 (228)
T ss_pred HHHHHHHHHHHHHhcCCcEEEee----CCCccccHHHHHHHHHhccCceEEEEeCCeEEecCHHHHHHHhc
Confidence 35778889999998888888883 443 33333333332246678899999999999998887764
No 32
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=30.16 E-value=24 Score=23.07 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=11.7
Q ss_pred CCCCCCCCcCCCCChh
Q 032819 111 GQCGCGESFMTTSSAE 126 (133)
Q Consensus 111 ~~C~CG~Sf~~~~~~~ 126 (133)
.-|.||.|-+-+.=++
T Consensus 32 ~LCrCG~S~NKPfCDG 47 (78)
T COG3369 32 ALCRCGHSENKPFCDG 47 (78)
T ss_pred EEEeccCcCCCCccCC
Confidence 5799999977555444
No 33
>PRK01160 hypothetical protein; Provisional
Probab=27.92 E-value=91 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=24.2
Q ss_pred cceeeCHHHHHHHHHHHhc-CCCCcEEEEEecC
Q 032819 16 QALTLTESAAERLRQLLEQ-RQRPFLRLGVKAR 47 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~-~~~~~LRi~v~~~ 47 (133)
+.=+||+++.+.|++.++. ..+...+|.|++.
T Consensus 92 PpGtIt~el~~ai~~a~~~~~~~~~~~I~VdGE 124 (178)
T PRK01160 92 PPGTITLALLRAIKKAFSLIERGKKVRIEVNGE 124 (178)
T ss_pred CCCcccHHHHHHHHHHHHhhhcCCeEEEEEcCh
Confidence 4558999999999998653 2445688998753
No 34
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=25.96 E-value=19 Score=19.82 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=15.5
Q ss_pred CC-CCCCCcCCCCChhhhhcC
Q 032819 112 QC-GCGESFMTTSSAEAAKRG 131 (133)
Q Consensus 112 ~C-~CG~Sf~~~~~~~~~~~~ 131 (133)
.| .|+..|.++++++..+.+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~ 24 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGR 24 (37)
T ss_pred ECCCCCceEEcCHHHcccCCc
Confidence 57 599999999988765543
No 35
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.61 E-value=97 Score=23.18 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=24.0
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecC
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKAR 47 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~ 47 (133)
+.=+||.+|.+.|++.+.+ ++.++|+|++.
T Consensus 87 pPGtIt~el~~ai~~a~~~--~k~~~I~V~GE 116 (167)
T COG1909 87 PPGTITFELIKAIEKALED--GKRVRIFVDGE 116 (167)
T ss_pred CCcEeEHHHHHHHHHHHhc--CCcEEEEEeCh
Confidence 5558999999999999654 45789999864
No 36
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=24.32 E-value=2.5e+02 Score=23.31 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=41.0
Q ss_pred cccCcceeeCHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccc
Q 032819 12 AIRRQALTLTESAAERLRQLLEQRQRPFLRLGVK-ARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKA 82 (133)
Q Consensus 12 ~~~~~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~-~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~ 82 (133)
+..+..-.|.+++...|++.+.+....+|.+... +-|= |.. -.-.-+.+|.|+|+.|.-+-|.+..
T Consensus 230 S~RKtk~~i~~E~~~~l~~~vl~g~~egl~~~~~dgKGR-Gv~----a~~~F~rgdFVVEY~Gdliei~eAk 296 (392)
T KOG1085|consen 230 SNRKTKKQISDEAKHALRDTVLKGTNEGLLEVYKDGKGR-GVR----AKVNFERGDFVVEYRGDLIEISEAK 296 (392)
T ss_pred cchhhHHHhhHHHHHHHHHHHHhccccceeEEeeccccc-eeE----eecccccCceEEEEecceeeechHH
Confidence 3444566788999999999877644344444433 3231 322 2223357899999998777766543
No 37
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=24.11 E-value=38 Score=18.89 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=7.5
Q ss_pred CCCCCCCCcCCCC
Q 032819 111 GQCGCGESFMTTS 123 (133)
Q Consensus 111 ~~C~CG~Sf~~~~ 123 (133)
..|.||.|-+.+.
T Consensus 20 ~lC~Cg~S~~~Pf 32 (38)
T PF09360_consen 20 ALCRCGKSKNKPF 32 (38)
T ss_dssp EE-SSS--TTTTB
T ss_pred EEecCCCCCCCCc
Confidence 5899999977654
No 38
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=24.00 E-value=80 Score=23.55 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCeEEEEcccchhccCCcEEEeEeCCCCcceEEECCCCC
Q 032819 72 KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSK 110 (133)
Q Consensus 72 ~gi~v~id~~~~~~L~g~~IDy~e~~~~~gF~i~nP~~~ 110 (133)
+++.|++.+.+...+....|-|.+...-+||++.+++..
T Consensus 119 ~~~~v~~~~~D~~~i~~~~l~~~~~~~~GGvil~s~dG~ 157 (185)
T PRK01194 119 EDCIIKVSESDKKKINNAKIKFADIDPYGGILAYSRDGK 157 (185)
T ss_pred CCeEEEEcHHhHHHHHhCceeeCCccccccEEEEeCCCc
Confidence 456777888888777776776775455678999877654
No 39
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=23.98 E-value=21 Score=24.62 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=13.8
Q ss_pred CCCC-CCCCcCCCCChhh
Q 032819 111 GQCG-CGESFMTTSSAEA 127 (133)
Q Consensus 111 ~~C~-CG~Sf~~~~~~~~ 127 (133)
-+|. |+.||...-|++-
T Consensus 48 ~sC~iC~esFqt~it~Ls 65 (109)
T KOG3214|consen 48 ASCRICEESFQTTITALS 65 (109)
T ss_pred eeeeehhhhhccchHhhc
Confidence 4787 9999998887764
No 40
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=23.21 E-value=2.3e+02 Score=22.77 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=46.4
Q ss_pred ccCCCCCCCcccCcceeeCHHHHHHHHHHHhcCCC---CcEEEEEecCCCCCceeeeeeccc----------CCCCCEEE
Q 032819 3 AASGSKVGPAIRRQALTLTESAAERLRQLLEQRQR---PFLRLGVKARGCNGLSYTLNYADE----------KSKFDEVV 69 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~I~IT~~A~~~l~~~l~~~~~---~~LRi~v~~~GC~G~~~~l~l~~~----------~~~~D~v~ 69 (133)
.+++++.-+......+++-++-...+++.+.+.+. .+||+.---.+-. .+++.+... -.++|+.+
T Consensus 155 ~~~~~~~~~~v~p~avslp~eivdaiRealakdpqkif~yIrltpv~r~ek--i~Gyr~~pgkd~slF~~sglq~GDIav 232 (275)
T COG3031 155 VTKGEKSLTQVNPTAVSLPSEIVDAIREALAKDPQKIFTYIRLTPVIRNEK--IEGYRFEPGKDGSLFYKSGLQRGDIAV 232 (275)
T ss_pred cccCCcccccCCCCcccCCcchhHHHhhhhccCHHHHhhheEeeeEeeCCc--eEEEEecCCCCcchhhhhcCCCcceEE
Confidence 35566666666677888888888889988877653 5888873322211 344444211 24678888
Q ss_pred EeCCeEEE
Q 032819 70 EDKGVKIL 77 (133)
Q Consensus 70 ~~~gi~v~ 77 (133)
..|++.+-
T Consensus 233 aiNnldlt 240 (275)
T COG3031 233 AINNLDLT 240 (275)
T ss_pred EecCcccC
Confidence 88887764
No 41
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=22.69 E-value=1.1e+02 Score=19.21 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=16.0
Q ss_pred CCCCCEEEEeCCeEEEEcc
Q 032819 62 KSKFDEVVEDKGVKILIDP 80 (133)
Q Consensus 62 ~~~~D~v~~~~gi~v~id~ 80 (133)
.-++|..++.++.++|..=
T Consensus 29 rLPGDi~i~~~~~~fyfPi 47 (64)
T PF11146_consen 29 RLPGDIRIRRGNFTFYFPI 47 (64)
T ss_pred CCCccEEEEECCEEEEEeh
Confidence 3589999999999998753
No 42
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=20.80 E-value=1.8e+02 Score=20.87 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=16.1
Q ss_pred eeCHHHHHHHHHHHhcCCCC
Q 032819 19 TLTESAAERLRQLLEQRQRP 38 (133)
Q Consensus 19 ~IT~~A~~~l~~~l~~~~~~ 38 (133)
.+|++|+..|++.|++.+..
T Consensus 113 ~l~~~a~NaLLK~LEepp~~ 132 (162)
T PF13177_consen 113 KLTEEAQNALLKTLEEPPEN 132 (162)
T ss_dssp GS-HHHHHHHHHHHHSTTTT
T ss_pred hhhHHHHHHHHHHhcCCCCC
Confidence 46999999999999998743
No 43
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=20.17 E-value=71 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=12.0
Q ss_pred CCCCC-CCCCcCCCCCh
Q 032819 110 KGQCG-CGESFMTTSSA 125 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~~~~ 125 (133)
...|. ||..|++-+++
T Consensus 8 ~~~C~~CG~d~~~~~ad 24 (86)
T PF06170_consen 8 APRCPHCGLDYSHARAD 24 (86)
T ss_pred CCcccccCCccccCCcC
Confidence 46886 99999976653
Done!