Query 032819
Match_columns 133
No_of_seqs 126 out of 1092
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 6.9E-40 2.4E-44 229.9 11.5 109 16-124 1-110 (118)
2 1nwb_A Hypothetical protein AQ 100.0 7.8E-40 2.7E-44 231.4 8.1 111 14-124 6-118 (124)
3 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 2.3E-39 7.7E-44 225.1 6.8 107 17-123 1-111 (112)
4 2d2a_A SUFA protein; iron-sulf 100.0 3.9E-38 1.3E-42 228.2 12.0 107 15-121 38-145 (145)
5 2apn_A Protein HI1723; HI1723 100.0 4.4E-38 1.5E-42 219.2 7.4 108 14-121 5-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 100.0 1.1E-28 3.9E-33 174.5 11.8 101 11-114 16-121 (125)
7 2p2e_A Putative Fe-S biosynthe 99.9 1.7E-22 5.9E-27 143.3 6.2 95 15-110 2-115 (128)
8 2qgo_A Putative Fe-S biosynthe 99.8 1.2E-21 4E-26 141.1 3.8 91 14-108 2-103 (141)
9 2m0e_A Zinc finger and BTB dom 40.5 16 0.00056 16.0 1.7 14 111-124 3-17 (29)
10 1znf_A 31ST zinc finger from X 35.6 14 0.00048 16.2 1.0 11 112-122 3-14 (27)
11 1ard_A Yeast transcription fac 35.0 15 0.00052 16.2 1.1 12 111-122 3-15 (29)
12 1paa_A Yeast transcription fac 34.9 17 0.00059 16.2 1.3 13 111-123 3-16 (30)
13 1rim_A E6APC2 peptide; E6-bind 33.3 20 0.0007 17.0 1.4 12 111-122 3-15 (33)
14 2k02_A Ferrous iron transport 33.2 75 0.0026 20.0 4.5 33 16-49 24-56 (87)
15 1klr_A Zinc finger Y-chromosom 32.4 25 0.00085 15.4 1.6 11 112-122 4-15 (30)
16 2a6s_A Toxin YOEB; YEFM, antit 31.5 31 0.0011 20.5 2.3 16 16-31 1-16 (84)
17 3gx8_A Monothiol glutaredoxin- 31.0 61 0.0021 21.1 3.9 28 20-50 1-32 (121)
18 2kvh_A Zinc finger and BTB dom 30.4 13 0.00043 16.5 0.3 11 112-122 5-16 (27)
19 2elr_A Zinc finger protein 406 29.5 27 0.00091 16.5 1.5 13 110-122 9-22 (36)
20 2m0d_A Zinc finger and BTB dom 28.8 14 0.00047 16.4 0.3 11 112-122 5-16 (30)
21 1p7a_A BF3, BKLF, kruppel-like 28.5 23 0.00077 16.9 1.1 12 111-122 12-24 (37)
22 1zfd_A SWI5; DNA binding motif 27.6 28 0.00097 15.9 1.4 13 111-123 4-19 (32)
23 2kvf_A Zinc finger and BTB dom 27.5 16 0.00053 16.2 0.3 11 112-122 5-16 (28)
24 1rik_A E6APC1 peptide; E6-bind 27.1 18 0.00061 16.0 0.5 12 112-123 4-16 (29)
25 3ipz_A Monothiol glutaredoxin- 26.6 74 0.0025 20.0 3.7 28 20-50 3-34 (109)
26 2kfq_A FP1; protein, de novo p 26.4 23 0.00079 16.6 0.9 12 111-122 3-15 (32)
27 1sp2_A SP1F2; zinc finger, tra 26.3 26 0.00088 16.0 1.1 12 111-122 3-17 (31)
28 2m0f_A Zinc finger and BTB dom 25.7 17 0.00057 16.0 0.2 11 112-122 4-15 (29)
29 2eom_A ZFP-95, zinc finger pro 24.1 33 0.0011 17.4 1.3 13 110-122 12-25 (46)
30 2elx_A Zinc finger protein 406 23.9 20 0.00067 16.8 0.3 12 111-122 8-20 (35)
31 2ely_A Zinc finger protein 224 22.9 39 0.0013 17.1 1.5 15 110-124 12-27 (46)
32 2jr7_A DPH3 homolog; DESR1, CS 22.0 9.7 0.00033 24.6 -1.4 17 111-127 24-40 (89)
33 1vd4_A Transcription initiatio 21.7 29 0.001 19.3 0.8 18 111-128 40-58 (62)
34 1va1_A Transcription factor SP 21.5 23 0.00078 17.2 0.3 12 111-122 9-23 (37)
35 1vs6_Z 50S ribosomal protein L 21.5 38 0.0013 20.7 1.3 16 111-126 14-29 (70)
36 1wge_A Hypothetical protein 26 21.2 13 0.00045 23.6 -0.9 17 111-127 31-47 (83)
37 1wmi_A RELE, hypothetical prot 21.1 24 0.00083 20.8 0.4 14 17-30 4-17 (90)
38 2eou_A Zinc finger protein 473 21.0 32 0.0011 17.3 0.8 13 110-122 12-25 (44)
39 2eoh_A Zinc finger protein 28 20.9 37 0.0013 17.2 1.1 13 110-122 12-25 (46)
40 2elm_A Zinc finger protein 406 20.7 19 0.00066 17.5 -0.1 12 111-122 10-22 (37)
41 2epx_A Zinc finger protein 28 20.7 38 0.0013 17.1 1.1 14 110-123 12-26 (47)
42 1srk_A Zinc finger protein ZFP 20.6 25 0.00086 16.5 0.3 12 111-122 8-20 (35)
43 2ytm_A Zinc finger protein 28 20.6 37 0.0013 17.2 1.1 13 110-122 12-25 (46)
44 2hq2_A Putative heme/hemoglobi 20.4 1.1E+02 0.0038 24.3 4.2 63 18-83 231-295 (354)
45 1bhi_A CRE-BP1, ATF-2; CRE bin 20.4 25 0.00085 16.9 0.3 12 111-122 7-21 (38)
46 2elp_A Zinc finger protein 406 20.2 29 0.00099 16.5 0.5 12 111-122 10-22 (37)
47 1ncs_A Peptide M30F, transcrip 20.0 32 0.0011 17.8 0.7 15 110-124 18-35 (47)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=6.9e-40 Score=229.88 Aligned_cols=109 Identities=46% Similarity=0.815 Sum_probs=91.7
Q ss_pred cceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEeE
Q 032819 16 QALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFV 94 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~ 94 (133)
|+|+|||+|+++|++++++++ +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|||.
T Consensus 1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~ 80 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence 799999999999999998754 4689999999999999999999888899999999999999999999999999999999
Q ss_pred eCCCCcceEEECCCCCCCCCCCCCcCCCCC
Q 032819 95 DDKLRSEFVFINPNSKGQCGCGESFMTTSS 124 (133)
Q Consensus 95 e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~~ 124 (133)
++..+++|+|.|||++++||||+||++++.
T Consensus 81 ~~~~g~gF~~~NPna~~~CgCG~SF~~~~~ 110 (118)
T 1r94_A 81 KEGLNEGFKFTNPNVKDECGCGESFKLAAA 110 (118)
T ss_dssp EETTEEEEEEECTTCCC-------------
T ss_pred cCCCcCceEEeCCCCCCCCCCCCCcCCCCC
Confidence 999999999999999999999999998764
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=7.8e-40 Score=231.44 Aligned_cols=111 Identities=33% Similarity=0.678 Sum_probs=88.9
Q ss_pred cCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEE
Q 032819 14 RRQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKM 91 (133)
Q Consensus 14 ~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~I 91 (133)
.+|||+|||+|+++|++++++++ +.+|||+|+++||+||+|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus 6 ~~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I 85 (124)
T 1nwb_A 6 QQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL 85 (124)
T ss_dssp CCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred cCceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence 36999999999999999998865 4589999999999999999999987788999999999999999999999999999
Q ss_pred EeEeCCCCcceEEECCCCCCCCCCCCCcCCCCC
Q 032819 92 DFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS 124 (133)
Q Consensus 92 Dy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~~ 124 (133)
||.++..+++|+|.|||++.+||||+||++++.
T Consensus 86 Dy~~~~~g~gF~~~NPna~~~CgCG~SF~~~~~ 118 (124)
T 1nwb_A 86 DYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLE 118 (124)
T ss_dssp EEEEETTEEEEEEECC-----------------
T ss_pred EEEcCCCcceEEEeCCCCCcCCCCCCCcCCCcc
Confidence 999999999999999999999999999998764
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=2.3e-39 Score=225.15 Aligned_cols=107 Identities=28% Similarity=0.540 Sum_probs=97.6
Q ss_pred ceeeCHHHHHHHHHHHhcC-C---CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEE
Q 032819 17 ALTLTESAAERLRQLLEQR-Q---RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMD 92 (133)
Q Consensus 17 ~I~IT~~A~~~l~~~l~~~-~---~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~ID 92 (133)
||+|||+|+++|+++++++ + +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID 80 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence 6999999999999999876 4 34799999999999999999999877889999999999999999999999999999
Q ss_pred eEeCCCCcceEEECCCCCCCCCCCCCcCCCC
Q 032819 93 FVDDKLRSEFVFINPNSKGQCGCGESFMTTS 123 (133)
Q Consensus 93 y~e~~~~~gF~i~nP~~~~~C~CG~Sf~~~~ 123 (133)
|.++..+++|+|.|||+++.||||+||+++.
T Consensus 81 y~~~~~g~gF~~~nPna~~~CgCG~SF~~~~ 111 (112)
T 1x0g_A 81 YIEDLMGGAFRFHNPNASQTCGCGMAFRVSR 111 (112)
T ss_dssp EEEETTEEEEEEECTTCSEECSSSSEEECCC
T ss_pred EEecCCCCEEEEeCCCCCcCCCCCCccccCC
Confidence 9999999999999999999999999999875
No 4
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=3.9e-38 Score=228.25 Aligned_cols=107 Identities=40% Similarity=0.689 Sum_probs=101.6
Q ss_pred CcceeeCHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEEEe
Q 032819 15 RQALTLTESAAERLRQLLEQRQ-RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDF 93 (133)
Q Consensus 15 ~~~I~IT~~A~~~l~~~l~~~~-~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy 93 (133)
+|.|+|||+|+++|++++++++ +.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus 38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy 117 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF 117 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence 6889999999999999998764 468999999999999999999998888999999999999999999999999999999
Q ss_pred EeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 94 VDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 94 ~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
+++..+++|+|.|||++.+||||+||++
T Consensus 118 ~e~l~g~gF~f~NPna~~~CGCG~SF~v 145 (145)
T 2d2a_A 118 VREGLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp EEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred EcCCCcceEEEeCCCCCcccCCCCCccC
Confidence 9999999999999999999999999974
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=4.4e-38 Score=219.15 Aligned_cols=108 Identities=31% Similarity=0.642 Sum_probs=101.1
Q ss_pred cCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhccCCcEE
Q 032819 14 RRQALTLTESAAERLRQLLEQRQ--RPFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKM 91 (133)
Q Consensus 14 ~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~I 91 (133)
..|+|+|||+|+++|++++++++ +.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus 5 ~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~I 84 (114)
T 2apn_A 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTV 84 (114)
T ss_dssp SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEE
T ss_pred CcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEE
Confidence 45789999999999999998653 4689999999999999999999987778999999999999999999999999999
Q ss_pred EeEeCCCCcceEEECCCCCCCCCCCCCcCC
Q 032819 92 DFVDDKLRSEFVFINPNSKGQCGCGESFMT 121 (133)
Q Consensus 92 Dy~e~~~~~gF~i~nP~~~~~C~CG~Sf~~ 121 (133)
||+++..+++|+|.|||++.+||||+||++
T Consensus 85 Dy~~~~~g~~F~~~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 85 DYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp EEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred EEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence 999999999999999999999999999974
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.96 E-value=1.1e-28 Score=174.52 Aligned_cols=101 Identities=26% Similarity=0.408 Sum_probs=93.0
Q ss_pred CcccCcceeeCHHHHHHHHHHHhcCC--CCcEEEEEe--cCCCCCceeeeeecccCCCCCEEEEeCCeEEEEcccchhcc
Q 032819 11 PAIRRQALTLTESAAERLRQLLEQRQ--RPFLRLGVK--ARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHV 86 (133)
Q Consensus 11 ~~~~~~~I~IT~~A~~~l~~~l~~~~--~~~LRi~v~--~~GC~G~~~~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L 86 (133)
....+|+|+|||+|+++|++++++++ +.+|||+|+ ++| |++|.|.|+++ .++|.+++.+|++|+||+.+++||
T Consensus 16 ~~~~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L 92 (125)
T 2k4z_A 16 PRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLL 92 (125)
T ss_dssp TCCCSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHH
T ss_pred ccCCCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhh
Confidence 45567999999999999999998875 368999999 888 99999999976 889999999999999999999999
Q ss_pred CCcEEEeEe-CCCCcceEEECCCCCCCCC
Q 032819 87 IGTKMDFVD-DKLRSEFVFINPNSKGQCG 114 (133)
Q Consensus 87 ~g~~IDy~e-~~~~~gF~i~nP~~~~~C~ 114 (133)
+|++|||.+ +..+++|+|.|||+++.|.
T Consensus 93 ~G~~IDy~~~~l~g~gF~~~NPna~~~~p 121 (125)
T 2k4z_A 93 DQTTLDYVELEPGQFHFIFLNPRDPTYRP 121 (125)
T ss_dssp TTEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred CCCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence 999999999 9999999999999987774
No 7
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.86 E-value=1.7e-22 Score=143.26 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=85.4
Q ss_pred CcceeeCHHHHHHHHHHHhcCCC-CcEEEEEecC-------CCCC-ceeeeeecccCCC----CCEEEEeCCeEEEEccc
Q 032819 15 RQALTLTESAAERLRQLLEQRQR-PFLRLGVKAR-------GCNG-LSYTLNYADEKSK----FDEVVEDKGVKILIDPK 81 (133)
Q Consensus 15 ~~~I~IT~~A~~~l~~~l~~~~~-~~LRi~v~~~-------GC~G-~~~~l~l~~~~~~----~D~v~~~~gi~v~id~~ 81 (133)
.|.|+|||+|+++|++++..++. ..||+. +++ ||+| +.|.|.+++++.+ .|.+++.++++|+||+.
T Consensus 2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~ 80 (128)
T 2p2e_A 2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY 80 (128)
T ss_dssp -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcc
Confidence 37899999999999999998765 468888 555 7999 5999999988877 89999999999999999
Q ss_pred chhccCC-cEEEeEeCC----CCcc-eEEECCCCC
Q 032819 82 ALMHVIG-TKMDFVDDK----LRSE-FVFINPNSK 110 (133)
Q Consensus 82 ~~~~L~g-~~IDy~e~~----~~~g-F~i~nP~~~ 110 (133)
++.||++ ++|||+++. ++++ |+|.|||++
T Consensus 81 s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~ 115 (128)
T 2p2e_A 81 SKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALS 115 (128)
T ss_dssp GGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEEC
T ss_pred hHHhhCCCeEEEEeCCCceEEecCCccEEECCCCe
Confidence 9999996 999999998 8999 999999986
No 8
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.83 E-value=1.2e-21 Score=141.10 Aligned_cols=91 Identities=13% Similarity=0.219 Sum_probs=72.6
Q ss_pred cCcceeeCHHHHHHHHHHHhcCCCCcE-------EEEEecCCCC-CceeeeeecccCCCC-CEEEEeC-CeEEEEcccch
Q 032819 14 RRQALTLTESAAERLRQLLEQRQRPFL-------RLGVKARGCN-GLSYTLNYADEKSKF-DEVVEDK-GVKILIDPKAL 83 (133)
Q Consensus 14 ~~~~I~IT~~A~~~l~~~l~~~~~~~L-------Ri~v~~~GC~-G~~~~l~l~~~~~~~-D~v~~~~-gi~v~id~~~~ 83 (133)
.+|.|+|||+|++||+++++.++...| |+.+.++||+ |+.|.|.+++++.++ |.+++.+ |++|+||+.++
T Consensus 2 ~~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl 81 (141)
T 2qgo_A 2 SLLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDK 81 (141)
T ss_dssp --CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHH
T ss_pred cceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHH
Confidence 368999999999999999988754568 9999999999 999999999888889 9999999 59999999999
Q ss_pred hccC-CcEEEeEeCCCCcceEEECCC
Q 032819 84 MHVI-GTKMDFVDDKLRSEFVFINPN 108 (133)
Q Consensus 84 ~~L~-g~~IDy~e~~~~~gF~i~nP~ 108 (133)
|||+ |++|||.++ .|++++|.
T Consensus 82 ~yLd~G~~IDy~~~----~l~Lks~s 103 (141)
T 2qgo_A 82 TMLGPNMVMDYNAG----SLSLSSDE 103 (141)
T ss_dssp TTSCSSEEEEEETT----EEEEEETT
T ss_pred HHhcCCCEEeEECC----EEEEcCCC
Confidence 9999 999999964 67776654
No 9
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.53 E-value=16 Score=15.98 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=9.8
Q ss_pred CCCC-CCCCcCCCCC
Q 032819 111 GQCG-CGESFMTTSS 124 (133)
Q Consensus 111 ~~C~-CG~Sf~~~~~ 124 (133)
..|. ||.+|....+
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCSSCCCCCCTTTH
T ss_pred CcCCCCCcccCCHHH
Confidence 3565 9999986543
No 10
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.64 E-value=14 Score=16.15 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=7.9
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 464 99998754
No 11
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.02 E-value=15 Score=16.25 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=8.6
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 3575 99998754
No 12
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.92 E-value=17 Score=16.25 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=9.0
Q ss_pred CCCC-CCCCcCCCC
Q 032819 111 GQCG-CGESFMTTS 123 (133)
Q Consensus 111 ~~C~-CG~Sf~~~~ 123 (133)
..|. ||.+|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 3 YACGLCNRAFTRRD 16 (30)
T ss_dssp SBCTTTCCBCSSSH
T ss_pred cCCcccCcccCChH
Confidence 3565 999997543
No 13
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=33.33 E-value=20 Score=16.98 Aligned_cols=12 Identities=33% Similarity=0.777 Sum_probs=8.6
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 3 ~~C~~C~k~F~~~ 15 (33)
T 1rim_A 3 FACPECPKRFMRS 15 (33)
T ss_dssp CCCSSSCCCCSSH
T ss_pred ccCCCCCchhCCH
Confidence 3575 99999754
No 14
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.15 E-value=75 Score=20.00 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=23.4
Q ss_pred cceeeCHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 032819 16 QALTLTESAAERLRQLLEQRQRPFLRLGVKARGC 49 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC 49 (133)
..+.+|+.++....+.|++++ ...|+.....||
T Consensus 24 ~~l~VS~~TIRrDL~~Le~~G-~l~R~~~~~~~C 56 (87)
T 2k02_A 24 ARLQTPQPLIDAMLERMEAMG-KVVRISETSEGC 56 (87)
T ss_dssp HHTTCCHHHHHHHHHHHHTTC-CSEEEEEECCSS
T ss_pred HHHCcCHHHHHHHHHHHHHCC-CEEEEecCCCCC
Confidence 346788888888888888766 556776555566
No 15
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.39 E-value=25 Score=15.44 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.2
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 4 ~C~~C~k~f~~~ 15 (30)
T 1klr_A 4 QCQYCEFRSADS 15 (30)
T ss_dssp CCSSSSCCCSCS
T ss_pred cCCCCCCccCCH
Confidence 565 99998754
No 16
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=31.49 E-value=31 Score=20.49 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.9
Q ss_pred cceeeCHHHHHHHHHH
Q 032819 16 QALTLTESAAERLRQL 31 (133)
Q Consensus 16 ~~I~IT~~A~~~l~~~ 31 (133)
|.|.+|+.|.+.|+++
T Consensus 1 m~i~~t~~a~kdl~~l 16 (84)
T 2a6s_A 1 MKLIWSEESWDDYLYW 16 (84)
T ss_dssp CEEEECHHHHHHHHHH
T ss_pred CeEEECHHHHHHHHHH
Confidence 5788898888887766
No 17
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.96 E-value=61 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=22.4
Q ss_pred eCHHHHHHHHHHHhcCCCCcEEEEEec----CCCC
Q 032819 20 LTESAAERLRQLLEQRQRPFLRLGVKA----RGCN 50 (133)
Q Consensus 20 IT~~A~~~l~~~l~~~~~~~LRi~v~~----~GC~ 50 (133)
+++++.+++++++.... |-||.++ .+|.
T Consensus 1 ~~~~~~~~v~~~i~~~~---Vvvfsk~t~~~p~Cp 32 (121)
T 3gx8_A 1 LSTEIRKAIEDAIESAP---VVLFMKGTPEFPKCG 32 (121)
T ss_dssp -CHHHHHHHHHHHHSCS---EEEEESBCSSSBCTT
T ss_pred CCHHHHHHHHHHhccCC---EEEEEeccCCCCCCc
Confidence 57889999999999765 8899876 3786
No 18
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.43 E-value=13 Score=16.53 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=7.9
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 5 ~C~~C~k~f~~~ 16 (27)
T 2kvh_A 5 SCSLCPQRSRDF 16 (27)
T ss_dssp ECSSSSCEESSH
T ss_pred cCCCcChhhCCH
Confidence 564 99998754
No 19
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.45 E-value=27 Score=16.46 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=9.6
Q ss_pred CCCCC-CCCCcCCC
Q 032819 110 KGQCG-CGESFMTT 122 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~ 122 (133)
...|. ||.+|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 9 THLCDMCGKKFKSK 22 (36)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeecCcCCCCcCch
Confidence 35786 99999754
No 20
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.83 E-value=14 Score=16.43 Aligned_cols=11 Identities=55% Similarity=1.232 Sum_probs=7.9
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 5 ~C~~C~~~f~~~ 16 (30)
T 2m0d_A 5 QCDYCGRSFSDP 16 (30)
T ss_dssp ECTTTCCEESCH
T ss_pred cCCCCCcccCCH
Confidence 465 99998754
No 21
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.52 E-value=23 Score=16.94 Aligned_cols=12 Identities=42% Similarity=0.791 Sum_probs=9.1
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 12 FQCPDCDRSFSRS 24 (37)
T ss_dssp BCCTTTCCCBSSH
T ss_pred ccCCCCCcccCcH
Confidence 4676 99999754
No 22
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.63 E-value=28 Score=15.87 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=9.6
Q ss_pred CCCC---CCCCcCCCC
Q 032819 111 GQCG---CGESFMTTS 123 (133)
Q Consensus 111 ~~C~---CG~Sf~~~~ 123 (133)
..|. ||.+|....
T Consensus 4 ~~C~~~~C~k~f~~~~ 19 (32)
T 1zfd_A 4 YSCDHPGCDKAFVRNH 19 (32)
T ss_dssp BCCCCTTCCCCBSSSH
T ss_pred CcCcCCCCCCccCCHH
Confidence 4685 999998643
No 23
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.54 E-value=16 Score=16.22 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=7.9
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 5 ~C~~C~k~f~~~ 16 (28)
T 2kvf_A 5 SCSVCGKRFSLK 16 (28)
T ss_dssp ECSSSCCEESCH
T ss_pred cCCCCCcccCCH
Confidence 464 99998754
No 24
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.11 E-value=18 Score=16.02 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=8.3
Q ss_pred CCC-CCCCcCCCC
Q 032819 112 QCG-CGESFMTTS 123 (133)
Q Consensus 112 ~C~-CG~Sf~~~~ 123 (133)
.|. ||.+|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (29)
T 1rik_A 4 ACPECPKRFMRSD 16 (29)
T ss_dssp ECSSSSCEESCSH
T ss_pred cCCCCCchhCCHH
Confidence 464 999987543
No 25
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.64 E-value=74 Score=20.04 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=22.6
Q ss_pred eCHHHHHHHHHHHhcCCCCcEEEEEec----CCCC
Q 032819 20 LTESAAERLRQLLEQRQRPFLRLGVKA----RGCN 50 (133)
Q Consensus 20 IT~~A~~~l~~~l~~~~~~~LRi~v~~----~GC~ 50 (133)
+++.+.++++++++... |.||.++ .+|.
T Consensus 3 ~s~~~~~~v~~~i~~~~---Vvvy~k~t~~~p~Cp 34 (109)
T 3ipz_A 3 LTPQLKDTLEKLVNSEK---VVLFMKGTRDFPMCG 34 (109)
T ss_dssp CCHHHHHHHHHHHTSSS---EEEEESBCSSSBSSH
T ss_pred CCHHHHHHHHHHHccCC---EEEEEecCCCCCCCh
Confidence 67899999999998655 8899876 3785
No 26
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.41 E-value=23 Score=16.56 Aligned_cols=12 Identities=33% Similarity=0.777 Sum_probs=8.4
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (32)
T 2kfq_A 3 FACPACPKRFMRS 15 (32)
T ss_dssp SSSSSSCTTHHHH
T ss_pred CCCCCCCcccCCH
Confidence 3575 99998743
No 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.34 E-value=26 Score=15.95 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.1
Q ss_pred CCC---CCCCCcCCC
Q 032819 111 GQC---GCGESFMTT 122 (133)
Q Consensus 111 ~~C---~CG~Sf~~~ 122 (133)
..| .||.+|...
T Consensus 3 ~~C~~~~C~k~f~~~ 17 (31)
T 1sp2_A 3 FMCTWSYCGKRFTRS 17 (31)
T ss_dssp CBCCSTTCCCBCSSH
T ss_pred cCCcCCCCCcccCCH
Confidence 468 599999754
No 28
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.67 E-value=17 Score=16.03 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=7.6
Q ss_pred CCC-CCCCcCCC
Q 032819 112 QCG-CGESFMTT 122 (133)
Q Consensus 112 ~C~-CG~Sf~~~ 122 (133)
.|. ||.+|...
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 2m0f_A 4 KCRECGKQFTTS 15 (29)
T ss_dssp ECTTTSCEESCH
T ss_pred cCCCCCCccCCh
Confidence 464 89988754
No 29
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.06 E-value=33 Score=17.43 Aligned_cols=13 Identities=31% Similarity=0.968 Sum_probs=9.9
Q ss_pred CCCCC-CCCCcCCC
Q 032819 110 KGQCG-CGESFMTT 122 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~ 122 (133)
+..|. ||.+|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 12 GHRCSDCGKFFLQA 25 (46)
T ss_dssp SCCCSSSCCCCSSH
T ss_pred CcCCCCCCCeeCCh
Confidence 45786 99999754
No 30
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.93 E-value=20 Score=16.80 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=8.8
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 2elx_A 8 YVCALCLKKFVSS 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eECCCCcchhCCH
Confidence 4675 99998754
No 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.90 E-value=39 Score=17.07 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=10.8
Q ss_pred CCCCC-CCCCcCCCCC
Q 032819 110 KGQCG-CGESFMTTSS 124 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~~~ 124 (133)
+..|. ||.+|....+
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2ely_A 12 PFKCVECGKGFSRRSA 27 (46)
T ss_dssp SBCCSSSCCCBSSTTH
T ss_pred CcccCccCcccCCHHH
Confidence 35785 9999986543
No 32
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=22.02 E-value=9.7 Score=24.60 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=13.7
Q ss_pred CCCCCCCCcCCCCChhh
Q 032819 111 GQCGCGESFMTTSSAEA 127 (133)
Q Consensus 111 ~~C~CG~Sf~~~~~~~~ 127 (133)
..|.||..|.+....++
T Consensus 24 ypCrCGd~F~IteedLe 40 (89)
T 2jr7_A 24 YPCPCGDNFSITKEDLE 40 (89)
T ss_dssp EECTTSSEEEEEHHHHH
T ss_pred EcCCCCCEEEECHHHHh
Confidence 47999999988776664
No 33
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.73 E-value=29 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=13.2
Q ss_pred CCCC-CCCCcCCCCChhhh
Q 032819 111 GQCG-CGESFMTTSSAEAA 128 (133)
Q Consensus 111 ~~C~-CG~Sf~~~~~~~~~ 128 (133)
..|. ||.+|....+....
T Consensus 40 ~~C~~C~k~f~~~~~~~~~ 58 (62)
T 1vd4_A 40 FRCTFCHTEVEEDESAMPK 58 (62)
T ss_dssp EBCSSSCCBCEECTTCSCC
T ss_pred EECCCCCCccccCcccccc
Confidence 5785 99999877766543
No 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=21.51 E-value=23 Score=17.20 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=9.4
Q ss_pred CCCC---CCCCcCCC
Q 032819 111 GQCG---CGESFMTT 122 (133)
Q Consensus 111 ~~C~---CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 9 ~~C~~~~C~k~f~~~ 23 (37)
T 1va1_A 9 HICHIQGCGKVYGKT 23 (37)
T ss_dssp EECCSTTCCCEESCH
T ss_pred CCCCCCCCCCccCCH
Confidence 4796 99999754
No 35
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=21.49 E-value=38 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=13.4
Q ss_pred CCCCCCCCcCCCCChh
Q 032819 111 GQCGCGESFMTTSSAE 126 (133)
Q Consensus 111 ~~C~CG~Sf~~~~~~~ 126 (133)
-.|+||..|.+..+..
T Consensus 14 ~~~s~g~~f~t~ST~~ 29 (70)
T 1vs6_Z 14 ASCSCGNVMKIRSTVG 29 (70)
T ss_dssp CCCCSSCCCCCBCCCC
T ss_pred EEECCCCEEEEeecCC
Confidence 4799999999988864
No 36
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=21.21 E-value=13 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=13.7
Q ss_pred CCCCCCCCcCCCCChhh
Q 032819 111 GQCGCGESFMTTSSAEA 127 (133)
Q Consensus 111 ~~C~CG~Sf~~~~~~~~ 127 (133)
..|.||..|.+....++
T Consensus 31 y~CrCGd~F~it~edL~ 47 (83)
T 1wge_A 31 YPCPCGDNFAITKEDLE 47 (83)
T ss_dssp ECCSSSSCEEEEHHHHH
T ss_pred EeCCCCCEEEECHHHHh
Confidence 48999999988776664
No 37
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=21.07 E-value=24 Score=20.76 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=8.9
Q ss_pred ceeeCHHHHHHHHH
Q 032819 17 ALTLTESAAERLRQ 30 (133)
Q Consensus 17 ~I~IT~~A~~~l~~ 30 (133)
.|.+|+.|.+.|++
T Consensus 4 ~i~~~~~a~~dl~~ 17 (90)
T 1wmi_A 4 RVKIHKQVVKALQS 17 (90)
T ss_dssp EEEEEHHHHHHHTT
T ss_pred EEEECHHHHHHHHH
Confidence 46677777666554
No 38
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=32 Score=17.28 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=9.7
Q ss_pred CCCCC-CCCCcCCC
Q 032819 110 KGQCG-CGESFMTT 122 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~ 122 (133)
+..|. ||.+|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2eou_A 12 TSECQECGKIFRHS 25 (44)
T ss_dssp CCCCTTTCCCCSSH
T ss_pred CeECCCCCcccCCH
Confidence 35786 99999854
No 39
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=37 Score=17.18 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=9.6
Q ss_pred CCCCC-CCCCcCCC
Q 032819 110 KGQCG-CGESFMTT 122 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~ 122 (133)
+..|. ||.+|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eoh_A 12 PYECKECRKTFIQI 25 (46)
T ss_dssp SCCCSSSCCCCSSH
T ss_pred CcCCCCcCchhCCH
Confidence 35785 99999754
No 40
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=19 Score=17.49 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=8.6
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|..+
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elm_A 10 YYCSQCHYSSITK 22 (37)
T ss_dssp EECSSSSCEEECH
T ss_pred eECCCCCcccCCH
Confidence 3575 99998754
No 41
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=38 Score=17.07 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=10.0
Q ss_pred CCCCC-CCCCcCCCC
Q 032819 110 KGQCG-CGESFMTTS 123 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~~ 123 (133)
+..|. ||.+|....
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (47)
T 2epx_A 12 PYECIECGKAFIQNT 26 (47)
T ss_dssp SBCCSSSCCCBSSHH
T ss_pred CEECCccCchhCChH
Confidence 35786 999998543
No 42
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.62 E-value=25 Score=16.49 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=8.7
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 8 ~~C~~C~k~f~~~ 20 (35)
T 1srk_A 8 FVCRICLSAFTTK 20 (35)
T ss_dssp EECSSSCCEESSH
T ss_pred eeCCCCCcccCCH
Confidence 4675 99998754
No 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.62 E-value=37 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.7
Q ss_pred CCCCC-CCCCcCCC
Q 032819 110 KGQCG-CGESFMTT 122 (133)
Q Consensus 110 ~~~C~-CG~Sf~~~ 122 (133)
+..|. ||.+|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 12 PYKCMECGKAFGDN 25 (46)
T ss_dssp SSSBTTTTBCCSSH
T ss_pred CcCCCCCCchhCCH
Confidence 45786 99999754
No 44
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat; HET: HEM; 1.45A {Escherichia coli} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=20.44 E-value=1.1e+02 Score=24.34 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=38.1
Q ss_pred eeeCHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeeccc--CCCCCEEEEeCCeEEEEcccch
Q 032819 18 LTLTESAAERLRQLLEQRQRPFLRLGVKARGCNGLSYTLNYADE--KSKFDEVVEDKGVKILIDPKAL 83 (133)
Q Consensus 18 I~IT~~A~~~l~~~l~~~~~~~LRi~v~~~GC~G~~~~l~l~~~--~~~~D~v~~~~gi~v~id~~~~ 83 (133)
-.|.+.|...+.+.+.+.+ ..|-+||.+.||-.+.= ..... +.....-+-..++++.++....
T Consensus 231 ~~v~~~al~~lL~~aa~~~-~pIM~FVgN~GciQIht--G~v~~~~~~g~W~NVldp~F~LHL~~~~I 295 (354)
T 2hq2_A 231 CKVSNSALAQILESAQQDG-NEIMVFVGNRGCVQIFT--GVVEKVVPMKGWLNIFNPTFTLHLLEESI 295 (354)
T ss_dssp EEECTTHHHHHHHHHHHHC-CCEEEEEECSSEEEEEE--ECCCCEEEETTEEEEECSSEEEEECGGGC
T ss_pred EEeCHHHHHHHHHHHHhcC-CcEEEEecCCceEEEeC--CcccCceecCCeEEEECCCceEEEccccc
Confidence 3566778888777776654 56999999999952211 11111 1233444556677777776544
No 45
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.40 E-value=25 Score=16.94 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCCC---CCCCcCCC
Q 032819 111 GQCG---CGESFMTT 122 (133)
Q Consensus 111 ~~C~---CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 7 ~~C~~~~C~k~f~~~ 21 (38)
T 1bhi_A 7 FLCTAPGCGQRFTNE 21 (38)
T ss_dssp EECCCTTTCCEESSH
T ss_pred eECCCCCCCcccCCH
Confidence 4788 99999754
No 46
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=29 Score=16.54 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.2
Q ss_pred CCCC-CCCCcCCC
Q 032819 111 GQCG-CGESFMTT 122 (133)
Q Consensus 111 ~~C~-CG~Sf~~~ 122 (133)
..|. ||.+|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elp_A 10 MKCPYCDFYFMKN 22 (37)
T ss_dssp EECSSSSCEECSS
T ss_pred eECCCCChhhccC
Confidence 4675 99999865
No 47
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.00 E-value=32 Score=17.80 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.3
Q ss_pred CCCC---CCCCCcCCCCC
Q 032819 110 KGQC---GCGESFMTTSS 124 (133)
Q Consensus 110 ~~~C---~CG~Sf~~~~~ 124 (133)
+..| .||.+|....+
T Consensus 18 ~~~C~~~~C~k~F~~~~~ 35 (47)
T 1ncs_A 18 TFECLFPGCTKTFKRRYN 35 (47)
T ss_dssp EEECCCTTCCCEECSSSS
T ss_pred CeECCCCCCCCccCCHHH
Confidence 3579 49999987654
Done!