BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032820
MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETI
RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK
VAEETSGYANENS

High Scoring Gene Products

Symbol, full name Information P value
SNX2a
sorting nexin 2A
protein from Arabidopsis thaliana 2.1e-52
SNX2b
sorting nexin 2B
protein from Arabidopsis thaliana 1.5e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032820
        (133 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171218 - symbol:SNX2a "sorting nexin 2A" spec...   543  2.1e-52   1
TAIR|locus:2182880 - symbol:SNX2b "sorting nexin 2B" spec...   535  1.5e-51   1


>TAIR|locus:2171218 [details] [associations]
            symbol:SNX2a "sorting nexin 2A" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0007154 "cell
            communication" evidence=IEA] [GO:0035091 "phosphatidylinositol
            binding" evidence=IEA;ISS] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] [GO:0030904 "retromer complex" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0032502 "developmental process" evidence=IGI]
            [GO:0032585 "multivesicular body membrane" evidence=IDA]
            [GO:0043621 "protein self-association" evidence=IPI] [GO:0051604
            "protein maturation" evidence=IMP] [GO:0090351 "seedling
            development" evidence=IGI] InterPro:IPR001683 Pfam:PF00787
            PROSITE:PS50195 PROSITE:PS51021 SMART:SM00312 GO:GO:0005829
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0015031
            GO:GO:0032585 GO:GO:0035091 GO:GO:0051604 GO:GO:0007154
            eggNOG:COG5391 Gene3D:3.30.1520.10 SUPFAM:SSF64268 EMBL:AB025632
            GO:GO:0030904 GO:GO:0090351 InterPro:IPR015404 Pfam:PF09325
            EMBL:AY099775 EMBL:BT000285 IPI:IPI00521979 RefSeq:NP_200652.2
            UniGene:At.29281 ProteinModelPortal:Q8L5Z7 SMR:Q8L5Z7 IntAct:Q8L5Z7
            STRING:Q8L5Z7 PaxDb:Q8L5Z7 PRIDE:Q8L5Z7 EnsemblPlants:AT5G58440.1
            GeneID:835957 KEGG:ath:AT5G58440 TAIR:At5g58440
            HOGENOM:HOG000241367 InParanoid:Q8L5Z7 OMA:TYKMDEN PhylomeDB:Q8L5Z7
            ProtClustDB:CLSN2690248 Genevestigator:Q8L5Z7 Uniprot:Q8L5Z7
        Length = 587

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 109/131 (83%), Positives = 120/131 (91%)

Query:     1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETI 60
             M+AV+ AF DRSSALLTVQTLLSEL SLQ R EKLEAASSK+FGGDKSRIRKIEELKETI
Sbjct:   453 MMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETI 512

Query:    61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120
             +VTEDAK+VAI  YERIKENNR+E+ERLD+ERRADF+NM+KGFVVNQVGYAEK+ NVWAK
Sbjct:   513 KVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAK 572

Query:   121 VAEETSGYANE 131
             VAEETS Y  E
Sbjct:   573 VAEETSQYDRE 583


>TAIR|locus:2182880 [details] [associations]
            symbol:SNX2b "sorting nexin 2B" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0007154 "cell
            communication" evidence=IEA] [GO:0035091 "phosphatidylinositol
            binding" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] [GO:0030904 "retromer complex"
            evidence=TAS] [GO:0005543 "phospholipid binding" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0016192 "vesicle-mediated
            transport" evidence=IMP] [GO:0045324 "late endosome to vacuole
            transport" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0032502
            "developmental process" evidence=IGI] [GO:0032585 "multivesicular
            body membrane" evidence=IDA] [GO:0046982 "protein
            heterodimerization activity" evidence=IPI] [GO:0051604 "protein
            maturation" evidence=IMP] [GO:0090351 "seedling development"
            evidence=IGI] InterPro:IPR001683 Pfam:PF00787 PROSITE:PS50195
            PROSITE:PS51021 SMART:SM00312 GO:GO:0005829 GO:GO:0005794
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016192 GO:GO:0005543
            GO:GO:0015031 EMBL:AL163652 GO:GO:0032585 GO:GO:0035091
            GO:GO:0051604 GO:GO:0007154 GO:GO:0045324 eggNOG:COG5391
            Gene3D:3.30.1520.10 SUPFAM:SSF64268 GO:GO:0030904 GO:GO:0090351
            UniGene:At.28633 UniGene:At.69715 InterPro:IPR015404 Pfam:PF09325
            HOGENOM:HOG000241367 ProtClustDB:CLSN2690248 EMBL:AK316886
            EMBL:AK220586 EMBL:AK230282 IPI:IPI00546538 PIR:T48483
            RefSeq:NP_196329.2 UniGene:At.74272 ProteinModelPortal:B9DFS6
            SMR:B9DFS6 IntAct:B9DFS6 PaxDb:B9DFS6 PRIDE:B9DFS6
            EnsemblPlants:AT5G07120.1 GeneID:830603 KEGG:ath:AT5G07120
            TAIR:At5g07120 InParanoid:Q9LYQ3 OMA:TWFEDKF PhylomeDB:B9DFS6
            Genevestigator:B9DFS6 Uniprot:B9DFS6
        Length = 572

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 107/133 (80%), Positives = 121/133 (90%)

Query:     1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETI 60
             M+AV+ AF DRSSALLTVQTLLSELSSL+ RAEKLE ASSK+FGGDKSRI+KIEELKETI
Sbjct:   440 MMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETI 499

Query:    61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120
             +VTED+K+VAI EYE+IKENN +E+ERLD+ERRADFLNM+KGFV NQVGYAEKIANVW K
Sbjct:   500 KVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTK 559

Query:   121 VAEETSGYANENS 133
             VAEET  Y  E+S
Sbjct:   560 VAEETRQYDRESS 572


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.320    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       133   0.00091  102 3  10 23  0.46    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  138 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.37u 0.11s 24.48t   Elapsed:  00:00:01
  Total cpu time:  24.37u 0.11s 24.48t   Elapsed:  00:00:01
  Start:  Fri May 10 05:06:36 2013   End:  Fri May 10 05:06:37 2013

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