BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032820
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5Z7|SNX2A_ARATH Sorting nexin 2A OS=Arabidopsis thaliana GN=SNX2A PE=1 SV=1
Length = 587
Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 120/131 (91%)
Query: 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETI 60
M+AV+ AF DRSSALLTVQTLLSEL SLQ R EKLEAASSK+FGGDKSRIRKIEELKETI
Sbjct: 453 MMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETI 512
Query: 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120
+VTEDAK+VAI YERIKENNR+E+ERLD+ERRADF+NM+KGFVVNQVGYAEK+ NVWAK
Sbjct: 513 KVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAK 572
Query: 121 VAEETSGYANE 131
VAEETS Y E
Sbjct: 573 VAEETSQYDRE 583
>sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1
Length = 572
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/133 (80%), Positives = 121/133 (90%)
Query: 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETI 60
M+AV+ AF DRSSALLTVQTLLSELSSL+ RAEKLE ASSK+FGGDKSRI+KIEELKETI
Sbjct: 440 MMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETI 499
Query: 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120
+VTED+K+VAI EYE+IKENN +E+ERLD+ERRADFLNM+KGFV NQVGYAEKIANVW K
Sbjct: 500 KVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTK 559
Query: 121 VAEETSGYANENS 133
VAEET Y E+S
Sbjct: 560 VAEETRQYDRESS 572
>sp|A1A200|DNLJ_BIFAA DNA ligase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083 / NCTC 11814 / E194a) GN=ligA PE=3 SV=1
Length = 892
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 56 LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVG 109
++E I+V+ S Y R EN R L+ +DK R AD +L + ++G
Sbjct: 683 IREEIKVSRGGTSSVQPVYIRPAENTRKMLDEMDKARHADLWRVLVALSIRRLG 736
>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry
plant/USA: Arkansas/C3ARK/2005) PE=3 SV=1
Length = 3491
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 29 QMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKS 68
QM+A LE+ASSK+ G D R I+ + T TEDA +
Sbjct: 3443 QMKAAALESASSKVLGLDGGSARAIDTERHT---TEDATA 3479
>sp|Q7TNM2|TRI46_MOUSE Tripartite motif-containing protein 46 OS=Mus musculus GN=Trim46
PE=2 SV=1
Length = 759
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 25 LSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 84
LS+ Q +KL + + I G + +I EL+ETIR TE + A E ++
Sbjct: 264 LSAYQALKDKLTKSLAYILGNQDTVQTQICELEETIRHTEVSGQQAKEEVSQLVRGLGAV 323
Query: 85 LERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS--------GYANE 131
LE E+RA L + + E+++ + A++ E S GYA E
Sbjct: 324 LE----EKRASLLQAI------EECQQERLSRLSAQIHEHQSLLDGSGLVGYAQE 368
>sp|Q6C9X0|SNX41_YARLI Sorting nexin-41 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SNX41 PE=3 SV=1
Length = 570
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 48 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 107
SR + I + +E I E A VA + E+ +LER ER AD M++ F+
Sbjct: 490 SRRQGIGKTREQIGQLEQALEVAQKDIVVANESVEKDLERFRAEREADLKCMIRAFLKCH 549
Query: 108 VGYAEKIANVW 118
+ +A++ + W
Sbjct: 550 IDWAKQNLDTW 560
>sp|A1A4L0|SNX4_BOVIN Sorting nexin-4 OS=Bos taurus GN=SNX4 PE=2 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 24 ELSSLQMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTED---AKSVAINEYERIK 78
EL++ +R L+ ++K+FG + R +I+ L+E I+ E +K++ E+ R
Sbjct: 344 ELATGTVRTFSLKGMTTKLFGQETPEQREARIKMLEEQIKEGEQQLKSKNLEGREFVR-- 401
Query: 79 ENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123
N ++ER +++ D L + V Q+ +K VW E
Sbjct: 402 -NAWADIERFKEQKNHDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2
Length = 2215
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 4 VRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVT 63
VR AF R A+LTVQ + + ++ ++L A +K R+ + E+L++ +
Sbjct: 829 VRKAFRHRLWAVLTVQAYARGMIARRLH-QRLRAEYLWRLEAEKMRLAEEEKLRKEMSAK 887
Query: 64 EDAKSVAINEYERIKENNRTELERLDKERRA 94
+ + ER+ + R + ER KE+ A
Sbjct: 888 KAKEEAERKHQERLAQLAREDAERELKEKEA 918
>sp|O00160|MYO1F_HUMAN Unconventional myosin-If OS=Homo sapiens GN=MYO1F PE=1 SV=3
Length = 1098
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 25 LSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKET-----IRVTEDA--KSVAINEYERI 77
L ++ M ++ + S+K+F + + +EE++E R + A + VA+ +YE +
Sbjct: 657 LRAVNMEPDQYQMGSTKVFVKNPESLFLLEEVRERKFDGFARTIQKAWRRHVAVRKYEEM 716
Query: 78 KENNRTELERLDKERRADFLNMLKGFVVNQVGYAEK 113
+E L KERR + +N + FV + +G E+
Sbjct: 717 REEASNILLN-KKERRRNSIN--RNFVGDYLGLEER 749
>sp|Q5R4C2|SNX4_PONAB Sorting nexin-4 OS=Pongo abelii GN=SNX4 PE=2 SV=1
Length = 450
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 24 ELSSLQMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKEN 80
EL++ +R L+ ++K+FG + R +I+ L+E I E KS + E +K N
Sbjct: 344 ELATGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-N 402
Query: 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123
++ER +++ D L + V Q+ +K VW E
Sbjct: 403 AWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q91YJ2|SNX4_MOUSE Sorting nexin-4 OS=Mus musculus GN=Snx4 PE=2 SV=1
Length = 450
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 24 ELSSLQMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKEN 80
EL++ +R L+ ++K+FG + R +I+ L+E I E KS + E +K N
Sbjct: 344 ELATGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-N 402
Query: 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123
++ER +++ D L + V Q+ +K VW E
Sbjct: 403 AWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|B8FUI8|PDRP_DESHD Putative pyruvate, phosphate dikinase regulatory protein
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=Dhaf_4252 PE=3 SV=1
Length = 273
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 32 AEKLEAASSKIFGGDKSRIRKIEELKETIRVT----EDAKSVAINEYERIKENNRTELER 87
AE + A++ F G +++IRK+ +++ I + E AK AI Y + + R LE
Sbjct: 19 AEYVSRAAAAQFSGIRTKIRKVPYVQDEIHIDEILEEAAKEQAIIAYTLVVKKLRNYLEE 78
Query: 88 LDKE---RRADFLNMLKGFVVNQVG 109
K+ R D L L + +Q G
Sbjct: 79 KAKDYGLRTVDILGPLIKMLADQTG 103
>sp|Q24SX2|PDRP_DESHY Putative pyruvate, phosphate dikinase regulatory protein
OS=Desulfitobacterium hafniense (strain Y51) GN=DSY3081
PE=3 SV=1
Length = 273
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 32 AEKLEAASSKIFGGDKSRIRKIEELKETIRVT----EDAKSVAINEYERIKENNRTELER 87
AE + A++ F G +++IRK+ +++ I + E AK AI Y + + R LE+
Sbjct: 19 AEYVSRAAAAQFSGIRTKIRKVPYVQDEIHIDEILEEAAKEQAIIAYTLVVKKLRNYLEK 78
Query: 88 LDKE---RRADFLNMLKGFVVNQVG 109
++ R D L L + +Q G
Sbjct: 79 KAQDYELRTVDILGPLIKMLADQTG 103
>sp|Q9W590|LSG1_DROME Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3
PE=1 SV=1
Length = 606
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFL 97
R +EE+K+++ EDA +V +Y+ I E EL RL ++ + L
Sbjct: 268 RAVEEIKQSLDSVEDALNVIEQKYKTIPETQNDELPRLPGDKNSPRL 314
>sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1
Length = 522
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 4 VRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVT 63
VR+AF R + T Q ++LQ + E + +++ +K K+++ K+ I
Sbjct: 406 VRAAFDQR---MKTWQRWQDAQATLQKKRE----SEARLLWANKPD--KLQQAKDEITEW 456
Query: 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 118
E + ++ERI R E+ R +KE+ DF N + ++ + +++A W
Sbjct: 457 ESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYW 511
>sp|A6ZXL6|ATG20_YEAS7 Autophagy-related protein 20 OS=Saccharomyces cerevisiae (strain
YJM789) GN=ATG20 PE=3 SV=1
Length = 640
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 110
++IE+L E++ VTE+ V ++ +N+ +L + KER D +LK + Y
Sbjct: 569 KEIEQLSESLEVTENDLEVI----SKVIKND--QLPKFSKEREVDLSEILKHYSRYMRNY 622
Query: 111 AEKIANVWAKV 121
A + +W +V
Sbjct: 623 ARQNLEIWKEV 633
>sp|Q07528|ATG20_YEAST Autophagy-related protein 20 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ATG20 PE=1 SV=1
Length = 640
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 110
++IE+L E++ VTE+ V ++ +N+ +L + KER D +LK + Y
Sbjct: 569 KEIEQLSESLEVTENDLEVI----SKVIKND--QLPKFSKEREVDLSEILKHYSRYMRNY 622
Query: 111 AEKIANVWAKV 121
A + +W +V
Sbjct: 623 ARQNLEIWKEV 633
>sp|Q9UKG1|DP13A_HUMAN DCC-interacting protein 13-alpha OS=Homo sapiens GN=APPL1 PE=1 SV=1
Length = 709
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 12 SSALLTVQTLLSELSSLQ--MRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSV 69
SS L ++ ELSS + + +A I + +++I LKE ++ +
Sbjct: 83 SSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDA 142
Query: 70 AINEYERI---KENNRTELERLDK---ERRADFLNMLKGFV-VNQVGYAEKIA 115
AIN Y R+ +EN++ + E + R+ M+ F +N + Y +KIA
Sbjct: 143 AINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIA 195
>sp|E9Q634|MYO1E_MOUSE Unconventional myosin-Ie OS=Mus musculus GN=Myo1e PE=1 SV=1
Length = 1107
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 19 QTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKET-----IRVTEDA--KSVAI 71
Q +L L S+ M +++ + SK+F + +EE++E RV + K VA
Sbjct: 653 QGVLHLLQSVNMDSDQFQLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKTWRKFVAR 712
Query: 72 NEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEK 113
+Y +++E ++L KERR + +N + F+ + +G E+
Sbjct: 713 KKYVQMRE-EASDLLLNKKERRRNSIN--RNFIGDYIGMEER 751
>sp|Q99N27|SNX1_RAT Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1
Length = 522
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 4 VRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVT 63
VR+AF R + T Q ++LQ + E + +++ +K K+++ K+ I
Sbjct: 406 VRAAFDQR---MKTWQRWQDAQATLQKKRE----SEARLLWANKPD--KLQQAKDEITEW 456
Query: 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 118
E + ++ERI R E+ R +KE+ DF N + ++ + +++A W
Sbjct: 457 ESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVIKYLETLLHSQQQLAKYW 511
>sp|Q8K3H0|DP13A_MOUSE DCC-interacting protein 13-alpha OS=Mus musculus GN=Appl1 PE=1 SV=1
Length = 707
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 12 SSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEE---LKETIRVTEDAKS 68
SS L ++ ELSS + A + +F + + R ++E LKE ++ +
Sbjct: 83 SSTLQQFSKVIDELSSCHA-VLSTQLADAMMFPISQFKERDLKEILTLKEVFQIASNDHD 141
Query: 69 VAINEYERI---KENNRTELERLDK---ERRADFLNMLKGFV-VNQVGYAEKIA 115
AIN Y R+ +EN++ + E + R+ M+ F +N + Y +KIA
Sbjct: 142 AAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIA 195
>sp|O95219|SNX4_HUMAN Sorting nexin-4 OS=Homo sapiens GN=SNX4 PE=1 SV=1
Length = 450
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 24 ELSSLQMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKEN 80
EL + +R L+ ++K+FG + R +I+ L+E I E KS + E +K N
Sbjct: 344 ELVTGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-N 402
Query: 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123
++ER +++ D L + V Q+ +K VW E
Sbjct: 403 AWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q63356|MYO1E_RAT Unconventional myosin-Ie OS=Rattus norvegicus GN=Myo1e PE=1 SV=1
Length = 1107
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 19 QTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKET-----IRVTEDA--KSVAI 71
Q +L L S+ M +++ + SK+F + +EE++E RV + K VA
Sbjct: 653 QGVLHLLQSVNMDSDQFQLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKTWRKFVAR 712
Query: 72 NEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 112
+Y +++E + ++L KERR + +N + F+ + +G E
Sbjct: 713 KKYVQMRE-DASDLLLNKKERRRNSIN--RNFIGDYIGMEE 750
>sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2
Length = 519
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 52 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111
KI++ K IR E ++E+I + R E+ R +KER DF ++ ++ + V
Sbjct: 442 KIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 501
Query: 112 EKIANVWAKVAEETSGYA 129
+++ W E A
Sbjct: 502 QQLIKYWEAFLPEAKAIA 519
>sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1
Length = 519
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 52 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111
KI++ K IR E ++E+I + R E+ R +KER DF ++ ++ + V
Sbjct: 442 KIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 501
Query: 112 EKIANVWAKVAEETSGYA 129
+++ W E A
Sbjct: 502 QQLIKYWEAFLPEAKAIA 519
>sp|Q12965|MYO1E_HUMAN Unconventional myosin-Ie OS=Homo sapiens GN=MYO1E PE=1 SV=2
Length = 1108
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 19 QTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKET-----IRVTEDA--KSVAI 71
Q +L L S+ M +++ + SK+F + +EE++E RV + + K VA
Sbjct: 653 QGVLHLLQSVNMDSDQFQLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKSWRKFVAR 712
Query: 72 NEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 112
+Y +++E ++L KERR + +N + F+ + +G E
Sbjct: 713 KKYVQMRE-EASDLLLNKKERRRNSIN--RNFIGDYIGMEE 750
>sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA
PE=1 SV=2
Length = 1146
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 50 IRKIEE-LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF 96
++K+EE L++ IR D +++ ER ++NR+E+E L+K+ + F
Sbjct: 371 VKKVEEKLQKKIREEIDNTKSELSKVERSVKDNRSEIEGLEKDCKNQF 418
>sp|Q0SM18|SYI_BORAP Isoleucine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=ileS
PE=3 SV=1
Length = 1042
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 54 EELKETIRVTEDAKSVAINEYERIKEN--NRTELERLDKERR 93
EE+ + ++ ED +S+ +N+Y + EN N+T E+++ R+
Sbjct: 766 EEIYQNLKTDEDKQSIHLNDYPKANENLINKTIEEKINLARK 807
>sp|Q4R503|SNX1_MACFA Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1
Length = 522
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 4 VRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVT 63
VR+AF R + T Q ++LQ + E A +++ +K K+++ K+ I
Sbjct: 406 VRAAFDQR---MKTWQRWQDAQATLQKKRE----AEARLLWANKPD--KLQQAKDEILEW 456
Query: 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 118
E + ++ERI R E+ R +KE+ DF N + ++ + +++A W
Sbjct: 457 ESRVTQYERDFERISTVVRKEVMRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYW 511
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.320
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,649,157
Number of Sequences: 539616
Number of extensions: 1380370
Number of successful extensions: 7352
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 7205
Number of HSP's gapped (non-prelim): 331
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)