Query 032820
Match_columns 133
No_of_seqs 102 out of 217
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07665 BAR_SNX1 The Bin/Amphi 100.0 1.3E-27 2.8E-32 184.6 16.6 116 2-126 119-234 (234)
2 cd07664 BAR_SNX2 The Bin/Amphi 100.0 1.7E-27 3.7E-32 184.2 17.1 116 2-126 119-234 (234)
3 cd07623 BAR_SNX1_2 The Bin/Amp 100.0 1.5E-27 3.3E-32 183.2 16.3 117 1-126 108-224 (224)
4 cd07627 BAR_Vps5p The Bin/Amph 99.9 6.7E-26 1.5E-30 173.1 17.4 116 1-123 100-215 (216)
5 PF09325 Vps5: Vps5 C terminal 99.9 5.6E-25 1.2E-29 168.1 15.6 117 1-124 120-236 (236)
6 cd07596 BAR_SNX The Bin/Amphip 99.9 2.5E-21 5.4E-26 145.2 16.3 117 1-124 102-218 (218)
7 cd07625 BAR_Vps17p The Bin/Amp 99.9 2E-20 4.3E-25 144.4 16.2 115 2-123 115-229 (230)
8 cd07624 BAR_SNX7_30 The Bin/Am 99.8 7.7E-20 1.7E-24 138.4 14.2 92 2-124 109-200 (200)
9 cd07621 BAR_SNX5_6 The Bin/Amp 99.8 7.7E-18 1.7E-22 129.1 15.1 99 2-125 120-218 (219)
10 cd07662 BAR_SNX6 The Bin/Amphi 99.8 9.8E-18 2.1E-22 127.9 14.8 99 2-125 119-217 (218)
11 cd07663 BAR_SNX5 The Bin/Amphi 99.8 1.3E-17 2.8E-22 127.6 15.5 99 2-125 119-217 (218)
12 cd07666 BAR_SNX7 The Bin/Amphi 99.8 4.3E-17 9.3E-22 126.7 14.7 94 2-123 149-242 (243)
13 cd07630 BAR_SNX_like The Bin/A 99.7 1.3E-16 2.7E-21 120.9 14.7 94 2-122 103-196 (198)
14 cd07622 BAR_SNX4 The Bin/Amphi 99.7 1.5E-16 3.3E-21 120.7 14.6 94 2-126 108-201 (201)
15 cd07628 BAR_Atg24p The Bin/Amp 99.7 3.3E-16 7.2E-21 117.4 13.0 86 2-124 100-185 (185)
16 cd07598 BAR_FAM92 The Bin/Amph 99.7 5.2E-15 1.1E-19 113.1 15.5 101 17-131 108-208 (211)
17 cd07667 BAR_SNX30 The Bin/Amph 99.6 8E-15 1.7E-19 113.7 14.6 94 2-123 146-239 (240)
18 KOG2273 Membrane coat complex 99.5 4E-13 8.7E-18 113.5 16.6 127 2-128 373-502 (503)
19 cd07629 BAR_Atg20p The Bin/Amp 99.4 5E-12 1.1E-16 95.0 13.2 55 69-123 131-186 (187)
20 cd07626 BAR_SNX9_like The Bin/ 99.2 1.1E-09 2.5E-14 83.0 13.0 56 68-123 142-197 (199)
21 cd07597 BAR_SNX8 The Bin/Amphi 98.9 8.7E-08 1.9E-12 74.7 13.7 116 2-125 130-246 (246)
22 cd07307 BAR The Bin/Amphiphysi 98.9 8.7E-08 1.9E-12 69.2 12.7 66 58-123 128-193 (194)
23 PF03114 BAR: BAR domain; Int 98.6 1.3E-06 2.8E-11 65.1 11.5 63 64-126 167-229 (229)
24 COG5391 Phox homology (PX) dom 98.6 1.5E-06 3.2E-11 74.4 12.7 81 46-126 442-522 (524)
25 smart00721 BAR BAR domain. 98.5 7.1E-06 1.5E-10 62.3 14.5 104 3-126 135-238 (239)
26 cd07588 BAR_Amphiphysin The Bi 98.5 1.3E-05 2.8E-10 61.4 14.3 108 2-130 104-211 (211)
27 cd07611 BAR_Amphiphysin_I_II T 98.4 2.2E-05 4.7E-10 60.2 13.7 106 2-128 104-209 (211)
28 cd07612 BAR_Bin2 The Bin/Amphi 98.3 3.3E-05 7.1E-10 59.2 13.9 107 2-129 104-210 (211)
29 PF10456 BAR_3_WASP_bdg: WASP- 98.3 5.7E-06 1.2E-10 64.4 9.8 61 64-124 175-235 (237)
30 cd07590 BAR_Bin3 The Bin/Amphi 98.3 3.8E-05 8.2E-10 59.4 13.7 107 2-127 108-214 (225)
31 KOG1660 Sorting nexin SNX6/TFA 98.1 8.7E-05 1.9E-09 60.5 12.7 101 2-127 298-398 (399)
32 PF06730 FAM92: FAM92 protein; 98.1 0.0003 6.5E-09 54.1 14.4 72 60-131 144-215 (219)
33 cd07591 BAR_Rvs161p The Bin/Am 98.1 0.00022 4.9E-09 55.0 13.8 104 2-126 109-212 (224)
34 cd07669 BAR_SNX33 The Bin/Amph 98.0 0.00021 4.5E-09 54.5 11.3 73 51-123 130-205 (207)
35 KOG3771 Amphiphysin [Intracell 98.0 0.00018 3.9E-09 60.4 11.9 109 2-131 122-230 (460)
36 cd07668 BAR_SNX9 The Bin/Amphi 97.9 0.00022 4.8E-09 54.5 11.2 61 65-125 147-207 (210)
37 cd07670 BAR_SNX18 The Bin/Amph 97.9 0.00036 7.8E-09 53.2 11.2 58 66-123 148-205 (207)
38 cd07618 BAR_Rich1 The Bin/Amph 97.8 0.00085 1.8E-08 52.6 12.5 105 13-129 125-230 (246)
39 cd07595 BAR_RhoGAP_Rich-like T 97.7 0.0013 2.8E-08 51.5 12.2 71 50-128 157-227 (244)
40 cd07599 BAR_Rvs167p The Bin/Am 97.7 0.0025 5.4E-08 48.5 13.4 98 2-116 110-207 (216)
41 cd07589 BAR_DNMBP The Bin/Amph 97.5 0.0025 5.3E-08 48.1 11.2 82 3-116 103-184 (195)
42 cd07620 BAR_SH3BP1 The Bin/Amp 97.4 0.0077 1.7E-07 47.5 12.5 106 15-128 127-240 (257)
43 cd07619 BAR_Rich2 The Bin/Amph 97.3 0.0095 2E-07 46.8 12.6 106 13-130 125-233 (248)
44 cd07593 BAR_MUG137_fungi The B 97.2 0.017 3.7E-07 44.4 12.6 65 61-126 145-209 (215)
45 cd07592 BAR_Endophilin_A The B 96.9 0.032 6.8E-07 43.2 11.8 64 63-127 155-218 (223)
46 cd07613 BAR_Endophilin_A1 The 96.8 0.027 5.8E-07 43.6 10.8 63 64-127 156-218 (223)
47 cd07615 BAR_Endophilin_A3 The 96.8 0.035 7.6E-07 43.0 11.1 63 64-127 156-218 (223)
48 cd07600 BAR_Gvp36 The Bin/Amph 96.4 0.13 2.7E-06 40.4 12.3 60 63-124 182-241 (242)
49 cd07603 BAR_ACAPs The Bin/Amph 96.3 0.34 7.4E-06 36.8 13.7 67 58-124 133-199 (200)
50 cd07594 BAR_Endophilin_B The B 96.0 0.21 4.4E-06 38.9 11.4 64 61-125 166-229 (229)
51 cd07614 BAR_Endophilin_A2 The 95.9 0.18 3.9E-06 39.1 10.7 61 65-126 157-217 (223)
52 cd07616 BAR_Endophilin_B1 The 95.7 0.59 1.3E-05 36.4 12.9 60 64-124 169-228 (229)
53 cd07604 BAR_ASAPs The Bin/Amph 95.5 0.82 1.8E-05 35.1 15.1 66 61-126 148-213 (215)
54 cd07648 F-BAR_FCHO The F-BAR ( 94.6 1.6 3.5E-05 33.9 16.4 79 50-128 156-234 (261)
55 cd07638 BAR_ACAP2 The Bin/Amph 93.9 1.2 2.7E-05 33.9 10.3 68 57-124 132-199 (200)
56 cd07606 BAR_SFC_plant The Bin/ 93.7 2.3 5.1E-05 32.3 14.2 65 59-123 137-201 (202)
57 cd07651 F-BAR_PombeCdc15_like 93.7 2.5 5.4E-05 32.4 15.3 25 82-106 195-219 (236)
58 cd07635 BAR_GRAF2 The Bin/Amph 93.6 1.2 2.6E-05 34.2 9.7 67 57-123 139-205 (207)
59 cd07602 BAR_RhoGAP_OPHN1-like 93.4 1.4 3.1E-05 33.8 9.9 67 57-123 139-205 (207)
60 cd07636 BAR_GRAF The Bin/Amphi 93.1 1.8 3.9E-05 33.2 10.0 66 58-123 140-205 (207)
61 cd07653 F-BAR_CIP4-like The F- 93.1 3.1 6.8E-05 31.9 16.8 68 51-118 161-243 (251)
62 cd07634 BAR_GAP10-like The Bin 92.8 1.8 3.9E-05 33.2 9.6 67 57-123 139-205 (207)
63 cd07637 BAR_ACAP3 The Bin/Amph 92.8 3.4 7.4E-05 31.4 14.7 67 58-124 133-199 (200)
64 KOG3725 SH3 domain protein SH3 92.5 4.6 0.0001 32.4 12.8 67 58-128 196-265 (375)
65 PRK11546 zraP zinc resistance 92.2 2.1 4.6E-05 31.0 8.8 58 12-76 57-114 (143)
66 cd07617 BAR_Endophilin_B2 The 92.2 4.4 9.6E-05 31.4 13.9 60 64-124 160-219 (220)
67 PRK14155 heat shock protein Gr 92.1 2 4.3E-05 32.9 9.1 56 50-105 19-74 (208)
68 cd07674 F-BAR_FCHO1 The F-BAR 91.9 5 0.00011 31.4 16.3 78 51-128 157-234 (261)
69 PRK14151 heat shock protein Gr 91.9 2.3 5.1E-05 31.7 9.1 56 50-105 26-81 (176)
70 PRK14163 heat shock protein Gr 91.8 2.5 5.4E-05 32.6 9.3 57 50-106 46-102 (214)
71 cd07660 BAR_Arfaptin The Bin/A 91.8 4.7 0.0001 30.8 13.2 64 60-123 136-199 (201)
72 PRK14140 heat shock protein Gr 91.7 2.9 6.3E-05 31.7 9.5 57 50-106 43-99 (191)
73 PF10455 BAR_2: Bin/amphiphysi 91.7 5.2 0.00011 32.2 11.4 63 62-126 226-288 (289)
74 PRK14149 heat shock protein Gr 91.6 2.4 5.3E-05 32.1 9.0 57 49-105 41-97 (191)
75 PRK14161 heat shock protein Gr 91.4 2.9 6.4E-05 31.2 9.2 56 50-105 25-80 (178)
76 PRK14147 heat shock protein Gr 91.2 2.9 6.3E-05 31.1 9.0 56 50-105 24-79 (172)
77 PRK14139 heat shock protein Gr 91.0 3.6 7.7E-05 31.0 9.3 57 50-106 38-94 (185)
78 PRK14154 heat shock protein Gr 90.9 3.8 8.1E-05 31.5 9.5 56 50-105 58-113 (208)
79 cd07639 BAR_ACAP1 The Bin/Amph 90.9 5.9 0.00013 30.2 16.3 66 58-123 133-198 (200)
80 PRK14141 heat shock protein Gr 90.8 3.2 7E-05 31.8 9.1 56 49-104 36-91 (209)
81 PRK14157 heat shock protein Gr 90.8 2.9 6.3E-05 32.5 8.9 55 50-104 83-137 (227)
82 PRK14158 heat shock protein Gr 90.6 3.9 8.5E-05 31.0 9.3 56 50-105 46-101 (194)
83 PF10168 Nup88: Nuclear pore c 90.5 5 0.00011 36.1 11.3 104 4-116 559-670 (717)
84 PRK14144 heat shock protein Gr 90.3 4.3 9.3E-05 31.0 9.3 57 50-106 51-107 (199)
85 PRK14143 heat shock protein Gr 90.0 4.7 0.0001 31.6 9.5 56 50-105 73-128 (238)
86 PRK14156 heat shock protein Gr 89.9 4.6 0.0001 30.2 9.0 56 50-105 33-88 (177)
87 cd07642 BAR_ASAP2 The Bin/Amph 89.8 7.7 0.00017 30.0 13.1 66 62-127 149-214 (215)
88 PRK14145 heat shock protein Gr 89.8 5.3 0.00012 30.4 9.4 58 50-107 51-108 (196)
89 PF07295 DUF1451: Protein of u 89.8 4.9 0.00011 29.1 8.9 50 56-105 9-58 (146)
90 COG0576 GrpE Molecular chapero 89.3 5.6 0.00012 30.0 9.2 57 50-106 42-98 (193)
91 PRK14153 heat shock protein Gr 89.2 5.7 0.00012 30.1 9.2 56 50-105 39-94 (194)
92 cd07655 F-BAR_PACSIN The F-BAR 89.1 9.3 0.0002 29.8 16.2 57 50-106 167-237 (258)
93 PRK14148 heat shock protein Gr 89.0 6.4 0.00014 29.9 9.4 57 50-106 46-102 (195)
94 PRK14159 heat shock protein Gr 88.9 6.4 0.00014 29.4 9.1 53 50-102 29-81 (176)
95 PRK14146 heat shock protein Gr 88.1 7.3 0.00016 30.0 9.3 56 50-105 60-115 (215)
96 PRK14162 heat shock protein Gr 87.8 8.1 0.00018 29.3 9.2 53 50-102 45-97 (194)
97 PRK14160 heat shock protein Gr 87.5 11 0.00024 29.0 11.3 57 50-106 67-123 (211)
98 PRK14164 heat shock protein Gr 87.5 7.8 0.00017 30.0 9.1 57 50-106 76-132 (218)
99 cd07631 BAR_APPL1 The Bin/Amph 87.5 12 0.00025 29.0 11.1 65 62-126 143-211 (215)
100 cd07676 F-BAR_FBP17 The F-BAR 86.9 13 0.00029 29.1 16.7 66 50-115 162-242 (253)
101 cd07633 BAR_OPHN1 The Bin/Amph 86.8 12 0.00027 28.7 9.8 67 57-123 139-205 (207)
102 KOG1772 Vacuolar H+-ATPase V1 86.7 8.2 0.00018 26.6 10.1 66 62-127 17-86 (108)
103 PF13805 Pil1: Eisosome compon 86.6 15 0.00032 29.4 13.1 70 17-87 132-201 (271)
104 PF11559 ADIP: Afadin- and alp 85.8 10 0.00023 26.9 15.5 82 2-90 38-119 (151)
105 cd07673 F-BAR_FCHO2 The F-BAR 85.6 16 0.00035 28.8 16.8 117 12-128 119-241 (269)
106 KOG4796 RNA polymerase II elon 85.1 9.1 0.0002 33.5 9.1 95 8-119 500-602 (604)
107 cd00011 BAR_Arfaptin_like The 84.8 15 0.00034 28.0 13.2 63 59-121 138-200 (203)
108 cd07601 BAR_APPL The Bin/Amphi 84.4 17 0.00036 28.0 14.8 69 61-129 142-211 (215)
109 cd07632 BAR_APPL2 The Bin/Amph 83.5 18 0.0004 27.9 10.9 68 59-126 138-211 (215)
110 cd07661 BAR_ICA69 The Bin/Amph 82.9 19 0.00041 27.6 15.1 63 60-122 139-201 (204)
111 PF01025 GrpE: GrpE; InterPro 82.5 12 0.00025 26.9 7.8 57 50-106 17-73 (165)
112 KOG0250 DNA repair protein RAD 81.6 49 0.0011 31.4 14.9 90 14-103 363-455 (1074)
113 PF04782 DUF632: Protein of un 80.6 29 0.00064 28.2 13.0 83 20-124 106-188 (312)
114 cd07686 F-BAR_Fer The F-BAR (F 80.4 26 0.00056 27.4 13.0 83 12-105 130-227 (234)
115 PRK14142 heat shock protein Gr 80.1 17 0.00037 28.2 8.2 55 51-105 40-94 (223)
116 PF05010 TACC: Transforming ac 77.9 29 0.00063 26.6 16.5 122 3-131 70-200 (207)
117 cd07647 F-BAR_PSTPIP The F-BAR 77.8 29 0.00064 26.6 15.3 57 51-107 153-223 (239)
118 PRK11032 hypothetical protein; 77.6 26 0.00056 25.8 10.7 44 63-106 26-69 (160)
119 PF05377 FlaC_arch: Flagella a 77.1 7 0.00015 23.8 4.2 30 52-81 1-30 (55)
120 PF04011 LemA: LemA family; I 76.8 27 0.00059 25.7 9.9 40 50-89 117-156 (186)
121 cd07640 BAR_ASAP3 The Bin/Amph 76.2 33 0.00072 26.4 13.2 69 59-127 144-212 (213)
122 TIGR03545 conserved hypothetic 75.2 57 0.0012 28.6 11.4 55 50-104 218-272 (555)
123 cd07655 F-BAR_PACSIN The F-BAR 74.5 39 0.00084 26.3 13.5 111 13-130 123-243 (258)
124 cd07675 F-BAR_FNBP1L The F-BAR 73.6 43 0.00093 26.4 16.5 98 8-112 126-238 (252)
125 cd07671 F-BAR_PSTPIP1 The F-BA 73.5 41 0.00088 26.2 13.1 57 50-106 152-222 (242)
126 PF03962 Mnd1: Mnd1 family; I 72.4 38 0.00083 25.3 9.9 18 92-109 153-170 (188)
127 PF00038 Filament: Intermediat 71.9 47 0.001 26.2 15.2 101 4-109 112-213 (312)
128 PF06456 Arfaptin: Arfaptin-li 68.7 52 0.0011 25.4 15.8 100 7-117 128-228 (229)
129 PRK14150 heat shock protein Gr 68.6 48 0.001 25.0 9.3 54 51-104 41-98 (193)
130 PF07139 DUF1387: Protein of u 68.3 64 0.0014 26.3 11.6 112 4-132 187-299 (302)
131 PRK09973 putative outer membra 67.5 33 0.00072 22.7 8.5 40 50-90 37-76 (85)
132 PRK10325 heat shock protein Gr 67.1 53 0.0011 24.9 9.1 55 50-104 41-99 (197)
133 PF11471 Sugarporin_N: Maltopo 66.1 18 0.00039 22.2 4.3 29 48-76 29-57 (60)
134 cd07657 F-BAR_Fes_Fer The F-BA 65.8 61 0.0013 25.1 16.5 73 51-130 161-233 (237)
135 KOG3651 Protein kinase C, alph 64.9 53 0.0012 27.1 7.9 54 67-120 286-339 (429)
136 cd07641 BAR_ASAP1 The Bin/Amph 64.6 64 0.0014 25.0 12.7 65 62-126 149-213 (215)
137 PRK15396 murein lipoprotein; P 64.0 37 0.00081 22.0 7.4 32 51-82 39-70 (78)
138 PF04568 IATP: Mitochondrial A 63.9 43 0.00094 22.7 6.7 44 13-67 52-99 (100)
139 KOG3433 Protein involved in me 62.3 67 0.0015 24.4 13.9 77 51-129 102-178 (203)
140 cd07672 F-BAR_PSTPIP2 The F-BA 62.3 72 0.0016 24.7 14.0 56 51-106 154-223 (240)
141 cd07649 F-BAR_GAS7 The F-BAR ( 62.2 71 0.0015 24.7 14.1 61 51-111 161-221 (233)
142 PF14257 DUF4349: Domain of un 60.3 59 0.0013 25.2 7.4 61 16-81 132-192 (262)
143 PRK09039 hypothetical protein; 60.1 95 0.0021 25.4 12.0 24 53-76 153-176 (343)
144 PF06005 DUF904: Protein of un 59.9 42 0.00092 21.3 10.3 59 17-89 12-70 (72)
145 PF10186 Atg14: UV radiation r 59.3 80 0.0017 24.3 17.9 69 50-120 69-137 (302)
146 KOG1962 B-cell receptor-associ 58.9 40 0.00087 26.1 6.0 26 51-76 158-183 (216)
147 KOG2856 Adaptor protein PACSIN 58.4 1E+02 0.0022 26.1 8.6 54 50-103 176-243 (472)
148 KOG0977 Nuclear envelope prote 58.3 1.3E+02 0.0029 26.5 12.3 101 7-115 195-299 (546)
149 TIGR00606 rad50 rad50. This fa 57.8 1.8E+02 0.004 28.0 14.5 38 51-88 902-939 (1311)
150 PF01025 GrpE: GrpE; InterPro 57.2 42 0.0009 24.0 5.7 69 50-118 10-78 (165)
151 PRK13729 conjugal transfer pil 55.5 56 0.0012 28.2 6.9 22 50-71 103-124 (475)
152 KOG1853 LIS1-interacting prote 55.2 1.1E+02 0.0024 24.6 9.1 28 10-37 85-112 (333)
153 PF07352 Phage_Mu_Gam: Bacteri 53.3 80 0.0017 22.5 7.4 56 51-110 10-65 (149)
154 KOG4677 Golgi integral membran 53.2 1.5E+02 0.0033 25.7 12.0 79 1-82 188-269 (554)
155 COG3883 Uncharacterized protei 52.9 1.2E+02 0.0025 24.3 10.8 40 50-89 65-104 (265)
156 PRK12704 phosphodiesterase; Pr 52.3 1.6E+02 0.0034 25.6 13.2 61 50-110 109-169 (520)
157 PF04728 LPP: Lipoprotein leuc 52.3 52 0.0011 20.0 8.4 34 50-83 16-49 (56)
158 PF03179 V-ATPase_G: Vacuolar 51.5 69 0.0015 21.2 8.4 33 74-106 31-63 (105)
159 KOG4460 Nuclear pore complex, 51.1 1.8E+02 0.004 26.0 12.5 69 50-119 608-682 (741)
160 PF05557 MAD: Mitotic checkpoi 49.8 1.9E+02 0.0042 25.9 11.8 81 16-106 566-646 (722)
161 PF00430 ATP-synt_B: ATP synth 49.6 79 0.0017 21.3 9.7 34 67-100 86-119 (132)
162 TIGR02894 DNA_bind_RsfA transc 49.0 1.1E+02 0.0023 22.7 8.6 31 51-81 118-148 (161)
163 COG2956 Predicted N-acetylgluc 48.6 74 0.0016 26.6 6.3 70 55-124 149-243 (389)
164 PF04728 LPP: Lipoprotein leuc 48.6 61 0.0013 19.7 5.7 28 51-78 3-30 (56)
165 TIGR00998 8a0101 efflux pump m 48.1 1.3E+02 0.0029 23.6 9.4 57 16-79 80-136 (334)
166 cd00446 GrpE GrpE is the adeni 48.1 93 0.002 21.7 7.1 47 61-107 2-48 (137)
167 PF06694 Plant_NMP1: Plant nuc 47.0 70 0.0015 26.2 5.8 76 53-128 170-250 (325)
168 PF08397 IMD: IRSp53/MIM homol 46.8 1.2E+02 0.0027 22.8 17.3 68 64-131 147-214 (219)
169 PRK06342 transcription elongat 46.1 62 0.0013 23.7 5.1 18 52-69 65-82 (160)
170 PF13758 Prefoldin_3: Prefoldi 44.5 99 0.0022 21.0 8.1 24 13-36 2-25 (99)
171 COG4238 Murein lipoprotein [Ce 43.8 89 0.0019 20.2 4.9 32 50-81 38-69 (78)
172 PRK14143 heat shock protein Gr 43.4 1.6E+02 0.0034 23.0 9.7 47 50-100 66-112 (238)
173 PRK10476 multidrug resistance 43.3 1.7E+02 0.0037 23.4 8.3 59 16-81 86-144 (346)
174 KOG0241 Kinesin-like protein [ 41.5 3.4E+02 0.0074 26.3 10.3 72 20-108 368-439 (1714)
175 PRK09039 hypothetical protein; 41.4 2E+02 0.0043 23.6 11.9 32 50-81 136-167 (343)
176 PRK03598 putative efflux pump 40.8 1.8E+02 0.004 23.0 8.8 26 52-77 108-133 (331)
177 PF08898 DUF1843: Domain of un 39.9 85 0.0018 18.9 4.3 31 6-36 21-51 (53)
178 PF02403 Seryl_tRNA_N: Seryl-t 39.2 1.1E+02 0.0024 20.1 10.6 28 50-77 73-100 (108)
179 cd07652 F-BAR_Rgd1 The F-BAR ( 39.2 1.8E+02 0.0038 22.4 14.3 54 52-105 173-227 (234)
180 TIGR03319 YmdA_YtgF conserved 39.0 2.6E+02 0.0056 24.3 13.1 60 50-109 103-162 (514)
181 smart00787 Spc7 Spc7 kinetocho 38.9 2.1E+02 0.0046 23.2 8.4 32 50-81 224-255 (312)
182 PRK14160 heat shock protein Gr 38.1 1.8E+02 0.004 22.3 11.8 45 50-94 53-97 (211)
183 PF14357 DUF4404: Domain of un 38.0 1.1E+02 0.0025 19.8 5.3 63 22-91 3-65 (85)
184 PF11461 RILP: Rab interacting 37.7 99 0.0021 19.1 5.0 32 1-32 2-33 (60)
185 PRK13729 conjugal transfer pil 37.5 1.5E+02 0.0033 25.7 6.8 25 51-75 69-93 (475)
186 KOG3003 Molecular chaperone of 37.1 2.1E+02 0.0045 22.5 9.1 58 51-108 77-134 (236)
187 PF13801 Metal_resist: Heavy-m 36.8 1.2E+02 0.0025 19.6 9.2 54 13-73 56-109 (125)
188 PRK15030 multidrug efflux syst 36.4 2.4E+02 0.0052 23.1 9.5 28 50-77 140-167 (397)
189 PF12443 AKNA: AT-hook-contain 36.4 1.4E+02 0.0031 20.5 6.3 33 50-82 44-76 (106)
190 KOG2528 Sorting nexin SNX9/SH3 36.2 1E+02 0.0022 26.6 5.5 26 82-115 462-487 (490)
191 PRK03598 putative efflux pump 36.1 2.2E+02 0.0047 22.6 8.5 60 11-74 109-168 (331)
192 TIGR01005 eps_transp_fam exopo 35.7 3.3E+02 0.0071 24.4 10.0 24 56-79 374-397 (754)
193 PF05377 FlaC_arch: Flagella a 35.6 1E+02 0.0022 18.7 6.5 36 51-86 7-42 (55)
194 PF06730 FAM92: FAM92 protein; 35.5 2E+02 0.0043 22.3 6.6 43 57-99 85-127 (219)
195 PF11932 DUF3450: Protein of u 35.2 2.1E+02 0.0045 22.0 14.3 69 53-124 79-161 (251)
196 PF04888 SseC: Secretion syste 35.1 2.2E+02 0.0049 22.4 7.5 53 18-81 10-62 (306)
197 TIGR03007 pepcterm_ChnLen poly 35.0 2.8E+02 0.006 23.4 10.8 32 50-81 347-378 (498)
198 KOG4403 Cell surface glycoprot 34.9 1.9E+02 0.0041 25.1 6.8 66 20-91 358-423 (575)
199 PF08946 Osmo_CC: Osmosensory 34.9 64 0.0014 18.8 2.9 19 50-68 18-36 (46)
200 PLN02939 transferase, transfer 34.2 4.2E+02 0.0091 25.2 9.5 11 116-126 414-424 (977)
201 PF12128 DUF3584: Protein of u 34.1 4.3E+02 0.0094 25.4 18.2 53 50-102 677-729 (1201)
202 cd00890 Prefoldin Prefoldin is 33.6 1.5E+02 0.0032 19.9 5.6 32 50-81 93-124 (129)
203 PRK00888 ftsB cell division pr 33.4 1.5E+02 0.0033 19.9 6.6 19 52-70 28-46 (105)
204 PRK14155 heat shock protein Gr 33.2 2.2E+02 0.0048 21.8 8.6 61 51-111 13-73 (208)
205 PF09006 Surfac_D-trimer: Lung 33.2 1E+02 0.0023 18.0 5.2 27 53-79 1-27 (46)
206 KOG0810 SNARE protein Syntaxin 32.9 2.6E+02 0.0057 22.6 14.3 113 13-125 37-154 (297)
207 KOG3891 Secretory vesicle-asso 32.7 3E+02 0.0065 23.2 14.9 68 61-128 188-255 (436)
208 cd07605 I-BAR_IMD Inverse (I)- 32.7 2.3E+02 0.005 21.8 16.2 105 13-126 116-220 (223)
209 PRK14158 heat shock protein Gr 32.2 2.2E+02 0.0049 21.5 11.1 60 48-111 37-100 (194)
210 PF10168 Nup88: Nuclear pore c 32.1 4E+02 0.0086 24.3 12.0 57 50-106 578-647 (717)
211 cd07653 F-BAR_CIP4-like The F- 31.9 2.3E+02 0.0049 21.5 17.3 68 58-125 161-232 (251)
212 PF10481 CENP-F_N: Cenp-F N-te 31.8 2.8E+02 0.0061 22.5 14.0 94 13-120 15-116 (307)
213 TIGR01069 mutS2 MutS2 family p 31.8 4.1E+02 0.0088 24.4 12.6 8 75-82 571-578 (771)
214 cd07659 BAR_PICK1 The Bin/Amph 31.0 2.5E+02 0.0055 21.7 14.3 107 8-117 98-206 (215)
215 PF07106 TBPIP: Tat binding pr 30.9 2E+02 0.0044 20.6 9.4 58 17-79 87-144 (169)
216 PF04420 CHD5: CHD5-like prote 30.8 2.1E+02 0.0045 20.7 7.2 31 50-80 72-102 (161)
217 PHA01816 hypothetical protein 30.7 1.6E+02 0.0035 20.9 4.9 42 81-122 4-54 (160)
218 PF06698 DUF1192: Protein of u 30.4 1.3E+02 0.0029 18.4 4.7 26 50-75 27-52 (59)
219 PF11285 DUF3086: Protein of u 29.9 2.9E+02 0.0064 22.1 7.4 58 51-112 11-68 (283)
220 PF06810 Phage_GP20: Phage min 29.9 2.2E+02 0.0047 20.6 8.7 22 53-74 53-74 (155)
221 PF05529 Bap31: B-cell recepto 29.8 2.3E+02 0.0049 20.8 8.4 31 51-81 154-184 (192)
222 cd07595 BAR_RhoGAP_Rich-like T 29.5 2.7E+02 0.0059 21.7 11.4 43 86-128 172-220 (244)
223 KOG3876 Arfaptin and related p 29.5 3.1E+02 0.0067 22.3 9.9 108 5-124 216-323 (341)
224 KOG0999 Microtubule-associated 29.4 4.2E+02 0.0092 23.8 10.5 79 6-84 40-140 (772)
225 PF04508 Pox_A_type_inc: Viral 29.1 84 0.0018 15.6 3.0 19 53-71 3-21 (23)
226 cd00632 Prefoldin_beta Prefold 29.1 1.8E+02 0.0038 19.3 9.6 34 48-81 60-93 (105)
227 KOG0521 Putative GTPase activa 29.0 3.2E+02 0.007 25.2 7.8 72 58-129 153-224 (785)
228 PF05008 V-SNARE: Vesicle tran 28.1 1.5E+02 0.0033 18.3 7.4 30 48-77 22-51 (79)
229 PRK08476 F0F1 ATP synthase sub 28.1 2.2E+02 0.0047 20.0 14.6 15 2-16 30-44 (141)
230 PF08580 KAR9: Yeast cortical 28.0 4.6E+02 0.01 23.8 14.5 118 3-128 236-364 (683)
231 KOG1118 Lysophosphatidic acid 28.0 3.5E+02 0.0076 22.4 13.9 111 1-125 119-235 (366)
232 cd07666 BAR_SNX7 The Bin/Amphi 27.9 3E+02 0.0065 21.6 12.7 24 99-122 211-234 (243)
233 PF01486 K-box: K-box region; 27.9 1.8E+02 0.0039 19.0 9.1 58 16-73 12-71 (100)
234 KOG0995 Centromere-associated 27.7 4.4E+02 0.0096 23.5 14.3 71 45-119 288-364 (581)
235 cd07657 F-BAR_Fes_Fer The F-BA 27.4 2.9E+02 0.0063 21.3 14.0 98 8-106 125-231 (237)
236 PHA02562 46 endonuclease subun 27.1 3.9E+02 0.0085 22.7 15.7 18 51-68 358-375 (562)
237 PF15397 DUF4618: Domain of un 27.1 3.2E+02 0.007 21.7 14.5 59 50-111 119-177 (258)
238 KOG1003 Actin filament-coating 27.1 1.3E+02 0.0028 23.1 4.2 29 51-79 165-193 (205)
239 PRK10698 phage shock protein P 26.8 2.9E+02 0.0063 21.1 10.8 27 7-33 90-116 (222)
240 PRK07352 F0F1 ATP synthase sub 26.7 2.5E+02 0.0054 20.3 14.3 41 64-104 103-143 (174)
241 PRK11519 tyrosine kinase; Prov 26.5 4.8E+02 0.01 23.5 8.7 49 51-102 339-387 (719)
242 PF11559 ADIP: Afadin- and alp 26.5 2.3E+02 0.005 19.9 14.8 50 50-100 72-121 (151)
243 COG1382 GimC Prefoldin, chaper 26.4 2.3E+02 0.0051 19.8 9.9 32 50-81 76-107 (119)
244 cd00584 Prefoldin_alpha Prefol 26.2 2.1E+02 0.0047 19.4 5.7 32 50-81 93-124 (129)
245 PHA03161 hypothetical protein; 26.1 2.7E+02 0.0058 20.4 7.3 55 50-104 53-109 (150)
246 PF10752 DUF2533: Protein of u 26.0 2E+02 0.0043 18.9 7.7 62 3-66 2-63 (84)
247 KOG1451 Oligophrenin-1 and rel 25.7 5.1E+02 0.011 23.6 9.5 69 57-125 156-224 (812)
248 PRK14163 heat shock protein Gr 25.5 3.2E+02 0.0069 21.1 9.2 59 53-111 42-100 (214)
249 PF13747 DUF4164: Domain of un 25.2 2E+02 0.0044 18.8 10.1 24 51-74 39-62 (89)
250 PF09718 Tape_meas_lam_C: Lamb 25.1 1.8E+02 0.004 18.2 4.9 30 96-125 8-37 (78)
251 KOG4809 Rab6 GTPase-interactin 25.1 5E+02 0.011 23.2 8.9 38 50-88 420-457 (654)
252 KOG3518 Putative guanine nucle 25.0 3.4E+02 0.0074 22.9 6.6 52 77-128 121-175 (521)
253 PF11945 WASH_WAHD: WAHD domai 25.0 2.3E+02 0.005 22.9 5.6 27 51-77 43-69 (297)
254 cd07680 F-BAR_PACSIN1 The F-BA 24.9 3.5E+02 0.0075 21.3 14.2 55 50-104 167-235 (258)
255 PF10779 XhlA: Haemolysin XhlA 24.7 1.8E+02 0.0039 18.0 7.6 30 51-80 20-49 (71)
256 cd07650 F-BAR_Syp1p_like The F 24.6 3.2E+02 0.0069 20.8 15.8 65 64-128 145-209 (228)
257 PF14703 DUF4463: Domain of un 24.5 1.8E+02 0.004 18.0 6.2 28 3-30 7-34 (85)
258 cd07652 F-BAR_Rgd1 The F-BAR ( 24.3 3.3E+02 0.0071 20.9 9.6 27 55-81 115-141 (234)
259 cd03562 CID CID (CTD-Interacti 24.3 1.7E+02 0.0038 19.3 4.2 30 96-125 20-49 (114)
260 KOG2264 Exostosin EXT1L [Signa 24.3 3.5E+02 0.0076 24.5 6.8 15 55-69 104-118 (907)
261 PRK14151 heat shock protein Gr 24.0 3.1E+02 0.0066 20.4 9.0 56 51-110 20-79 (176)
262 PRK10698 phage shock protein P 24.0 3.3E+02 0.0072 20.8 9.5 28 51-78 113-140 (222)
263 PRK00409 recombination and DNA 23.9 5.7E+02 0.012 23.5 14.8 41 63-103 553-593 (782)
264 COG1777 Predicted transcriptio 23.8 3.1E+02 0.0068 21.2 5.8 40 51-90 125-164 (217)
265 PF07802 GCK: GCK domain; Int 23.6 2.1E+02 0.0046 18.4 5.1 36 91-126 38-73 (76)
266 PF12001 DUF3496: Domain of un 23.4 2.6E+02 0.0056 19.3 6.1 62 55-122 4-67 (111)
267 PF04568 IATP: Mitochondrial A 23.4 2.4E+02 0.0053 19.0 7.8 46 6-61 52-100 (100)
268 PRK00409 recombination and DNA 23.4 5.8E+02 0.013 23.4 12.6 16 69-84 570-585 (782)
269 TIGR01010 BexC_CtrB_KpsE polys 22.7 4.1E+02 0.0089 21.4 8.1 23 15-37 213-235 (362)
270 PF12252 SidE: Dot/Icm substra 22.6 6.8E+02 0.015 24.5 8.6 79 14-105 1129-1211(1439)
271 PRK06228 F0F1 ATP synthase sub 22.4 2.8E+02 0.0061 19.5 5.1 34 58-91 87-120 (131)
272 PF06476 DUF1090: Protein of u 22.3 2.7E+02 0.0059 19.2 6.7 26 48-73 67-92 (115)
273 PF00261 Tropomyosin: Tropomyo 22.3 3.6E+02 0.0078 20.6 12.6 21 51-71 176-196 (237)
274 PRK13454 F0F1 ATP synthase sub 22.3 3.2E+02 0.007 20.0 15.2 43 64-106 115-157 (181)
275 TIGR03166 alt_F1F0_F1_eps alte 21.9 2.6E+02 0.0055 19.4 4.7 34 58-91 84-117 (122)
276 KOG0250 DNA repair protein RAD 21.8 7.3E+02 0.016 23.9 10.0 42 50-91 754-795 (1074)
277 PF12252 SidE: Dot/Icm substra 21.7 7.7E+02 0.017 24.2 10.5 98 1-99 1017-1126(1439)
278 PRK13455 F0F1 ATP synthase sub 21.6 3.3E+02 0.0071 19.8 15.3 43 64-106 111-153 (184)
279 COG4479 Uncharacterized protei 21.5 63 0.0014 20.7 1.4 29 98-126 42-73 (74)
280 KOG4593 Mitotic checkpoint pro 21.5 6.4E+02 0.014 23.1 11.3 79 9-88 552-630 (716)
281 TIGR01069 mutS2 MutS2 family p 21.4 6.4E+02 0.014 23.1 14.9 55 51-105 536-590 (771)
282 KOG3331 Mitochondrial/chloropl 21.4 1.6E+02 0.0035 22.5 3.8 34 1-34 120-153 (213)
283 PF12777 MT: Microtubule-bindi 21.4 4.4E+02 0.0096 21.3 8.9 35 52-90 264-298 (344)
284 PRK09859 multidrug efflux syst 21.4 4.5E+02 0.0098 21.3 9.5 27 51-77 137-163 (385)
285 PRK14147 heat shock protein Gr 21.0 3.5E+02 0.0076 19.9 8.8 55 51-109 18-76 (172)
286 PF08725 Integrin_b_cyt: Integ 20.9 47 0.001 19.3 0.7 13 82-94 9-21 (47)
287 PF15188 CCDC-167: Coiled-coil 20.9 1.8E+02 0.0039 19.1 3.6 24 58-81 5-28 (85)
288 PRK13837 two-component VirA-li 20.9 3.1E+02 0.0068 24.8 6.2 77 5-89 51-127 (828)
289 cd07681 F-BAR_PACSIN3 The F-BA 20.8 4.3E+02 0.0093 20.9 11.2 56 50-105 167-236 (258)
290 KOG4571 Activating transcripti 20.7 4.7E+02 0.01 21.3 8.6 16 21-36 239-254 (294)
291 PRK14154 heat shock protein Gr 20.6 4E+02 0.0086 20.4 10.3 56 51-110 52-111 (208)
292 PRK09343 prefoldin subunit bet 20.5 3E+02 0.0064 18.9 9.9 34 50-83 77-110 (121)
293 PF11853 DUF3373: Protein of u 20.5 91 0.002 27.1 2.6 19 51-69 31-49 (489)
294 PF01496 V_ATPase_I: V-type AT 20.5 4.9E+02 0.011 23.5 7.3 40 49-88 227-266 (759)
295 PF06810 Phage_GP20: Phage min 20.3 3.4E+02 0.0074 19.6 9.4 40 49-88 39-81 (155)
296 PRK14162 heat shock protein Gr 20.2 3.9E+02 0.0085 20.2 10.7 42 50-95 38-79 (194)
297 KOG0963 Transcription factor/C 20.1 6.5E+02 0.014 22.7 12.3 57 48-108 193-249 (629)
298 PF14931 IFT20: Intraflagellar 20.1 3.1E+02 0.0068 19.0 8.8 53 28-80 55-109 (120)
299 TIGR02977 phageshock_pspA phag 20.0 3.9E+02 0.0085 20.1 10.8 32 5-36 88-119 (219)
300 cd07658 F-BAR_NOSTRIN The F-BA 20.0 4.1E+02 0.0089 20.4 14.2 48 51-102 171-218 (239)
No 1
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.96 E-value=1.3e-27 Score=184.63 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|.+|.++|++|++++++|.+|+.+++||.+. .+++|+..++.+|.+++.+++.++..|+.|++.+
T Consensus 119 ~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~---------~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~i 189 (234)
T cd07665 119 SAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA---------NKPDKLQQAKDEIAEWESRVTQYERDFERISATV 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999763 2469999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
+.||.||+.+|..||+++|..|++.||++++++++.|+.|+|++.
T Consensus 190 k~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~~ 234 (234)
T cd07665 190 RKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999999863
No 2
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.96 E-value=1.7e-27 Score=184.15 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|.+|.++|++|++++.+|.+|+++++||.+. .+++|+++++.+|.+++.+++.|+.+|+.|++++
T Consensus 119 ~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~---------~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~ 189 (234)
T cd07664 119 AAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA---------NKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTI 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999763 2469999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
+.||.||+.+|..||+++|..|++.||++++++++.|++|+|++.
T Consensus 190 k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~~ 234 (234)
T cd07664 190 RKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999863
No 3
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=99.96 E-value=1.5e-27 Score=183.23 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=112.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++|||++|.+|.++|++||+++.+|.++|++++||... ++++|+..++.+|.+++.+++.|+.+|+.|++.
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~---------~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~ 178 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELS---------GRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKT 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999874 246999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 81 ~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
++.||.||+.+|+.||+.+|..|++.||++++++++.|+.|+|++.
T Consensus 179 ~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe~~ 224 (224)
T cd07623 179 IKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPEAK 224 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999863
No 4
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.94 E-value=6.7e-26 Score=173.15 Aligned_cols=116 Identities=27% Similarity=0.402 Sum_probs=110.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++|||.+|.+|.++|++|+++..+|.+++++++||.+. +.++++|+..++.+|.+++.+++.|+.+|+.|++.
T Consensus 100 ~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~-------~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~ 172 (216)
T cd07627 100 IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ-------GKTQQEKLNSLLSELEEAERRASELKKEFEEVSEL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999863 23568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 81 ~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
++.|+.||+.+|+.||+++|..|++.||++++++++.|++|..
T Consensus 173 ~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 173 IKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999874
No 5
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=99.93 E-value=5.6e-25 Score=168.15 Aligned_cols=117 Identities=32% Similarity=0.512 Sum_probs=111.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++|||.+|..|.+++.+|+++..+|.+++++++|+.+.+ .++++|+..++.+|.+++.+++.++.+|+.|+++
T Consensus 120 ~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~-------~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 120 IESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG-------KNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999998742 2357999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 81 ~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
++.|++||+.+|..||+++|..|++.||.+++++++.|++|+|+
T Consensus 193 ~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 193 IKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 99999999999999999999999999999999999999999995
No 6
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=2.5e-21 Score=145.21 Aligned_cols=117 Identities=41% Similarity=0.555 Sum_probs=111.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++|||++|..|..++..|+.++..|.++++++++|.+.+ .+++.|+..++.+|.+++..++.++..|+.|+..
T Consensus 102 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~-------~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~ 174 (218)
T cd07596 102 CQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP-------GIKPAKVEELEEELEEAESALEEARKRYEEISER 174 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998742 2467999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 81 ~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
++.|+.||+.+|..||+.+|.+|+..|+.++++++++|+.+.|+
T Consensus 175 ~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 175 LKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999884
No 7
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=2e-20 Score=144.36 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+||++|++|..++.+|++|++++.+|+.+.++|.+.+ . .+++|+.++..++.+++..++.++..|+.|+.+|
T Consensus 115 ~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~-----~--i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm 187 (230)
T cd07625 115 YVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKR-----D--INPLKVDEAIRQLEEATKHEHDLSLKLKRITGNM 187 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C--CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999742 2 2479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+.|+.||+.++..||+.+|++|+..+|.++.+.+..||++.|
T Consensus 188 ~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~ 229 (230)
T cd07625 188 LIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRL 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999876
No 8
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.84 E-value=7.7e-20 Score=138.39 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|..|+..+.+|+.++++|.+|+.+ ++..|+.|+..|++|++.+
T Consensus 109 ~svk~~l~~R~~~q~~~e~~~e~L~~k~~~-------------------------------l~~ev~~a~~~~e~~~~~~ 157 (200)
T cd07624 109 DAVKDVLKRRDQFQIEYELSVEELNKKRLE-------------------------------LLKEVEKLQDKLECANADL 157 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999998866 4556777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+.|++||+.+|..|||.+|.+|++.||+||++++++|++++|.
T Consensus 158 ~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p~ 200 (200)
T cd07624 158 KADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLPA 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999984
No 9
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.78 E-value=7.7e-18 Score=129.09 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||++|.+|.++|++||+|+.+|+++|.. + .+|.++|.++++|+..|+.||+.+
T Consensus 120 ~A~K~~l~rR~ral~~~q~A~k~L~KaR~k------------------~-------~~v~~AE~~~~~a~~~Fe~iS~~~ 174 (219)
T cd07621 120 QAAKDLLYRRLRCLANYENANKNLEKARAK------------------N-------KDVHAAEAAQQEACEKFESMSESA 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhc------------------h-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999952 1 567778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
+.|+.||+.+|+.||+..|+.|+++|+++++..++.|.+.+..+
T Consensus 175 k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 175 KQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999877543
No 10
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.78 E-value=9.8e-18 Score=127.92 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||++|.+|.++|++||+|+.+|.++|.+ + .+|.++|.++.+|+++|+.||+.+
T Consensus 119 ~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-----~--------------------kev~~aE~~~~~a~~~Fe~IS~~a 173 (218)
T cd07662 119 QAAKDLLYRRSRSLVDYENANKALDKARAK-----N--------------------KDVLQAETTQQLCCQKFEKISESA 173 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C--------------------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999877 1 689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
+.|+.||+..|+.|||.+|+.|++++|++++...+.|.+.+..+
T Consensus 174 K~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 174 KQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999877543
No 11
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.78 E-value=1.3e-17 Score=127.58 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||++|.+|.++|++||+|+.+|+++|.. ..+|.++|.++.+|+++|+.||+.+
T Consensus 119 ~A~K~ll~rR~ral~~~e~A~~~L~KaR~k-------------------------~kev~~aE~~~~ea~~~Fe~IS~~~ 173 (218)
T cd07663 119 EAAKDLLYRRARALADYENSNKALDKARLK-------------------------SKDVKQAEAHQQECCQKFEKLSESA 173 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999988832 2567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
+.|+.||+..|+.||+..|+.|++++|++++.....|.+.+..+
T Consensus 174 k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 174 KQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999877654
No 12
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.75 E-value=4.3e-17 Score=126.72 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|..|. .++.+|++|+..+.+.. ++| ..+..+|.+++.+|+.| +..+
T Consensus 149 ~slK~vlk~R~-------~~Q~~le~k~e~l~k~~-------------~dr-~~~~~ev~~~e~kve~a-------~~~~ 200 (243)
T cd07666 149 ETLMGVIKRRD-------QIQAELDSKVEALANKK-------------ADR-DLLKEEIEKLEDKVECA-------NNAL 200 (243)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhhh-------------hhH-HHHHHHHHHHHHHHHHH-------HHHH
Confidence 58999999996 56666666666666533 366 68888999999999998 6779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+.|++||+.+|+.||+.+|++|++.||.+|++++.+|+.|+.
T Consensus 201 k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl~ 242 (243)
T cd07666 201 KADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESFLH 242 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999874
No 13
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.74 E-value=1.3e-16 Score=120.92 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|.+|.++|+.|++|..+|.+++.+ |. ..+|.+++.|+..|+.|++.+
T Consensus 103 ~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~--------------------k~-------~~ae~~~~~a~~~fe~iS~~~ 155 (198)
T cd07630 103 ESEKDMLFRRTCKLIEFENASKALEKAKPQ--------------------KK-------EQAEEAKKKAETEFEEISSLA 155 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh--------------------hH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999964322 22 127788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVA 122 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~ 122 (133)
+.|+.||+.+|+.||+..|..|++.||++++..++.|.+.+
T Consensus 156 k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 156 KKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998765
No 14
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.73 E-value=1.5e-16 Score=120.66 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.++..|.-....++.+.+.|.+|+.. ++..|+.|+..+++|++.+
T Consensus 108 ~slk~vlk~r~~~q~~~e~~~~~L~~k~~~-------------------------------l~~~ve~a~~~~e~f~~~~ 156 (201)
T cd07622 108 DSLRAVCKKHELLQYDLEKAEDALANKKQQ-------------------------------GEEAVKEAKDELNEFVKKA 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888887777766333 8889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
+.|++||+.+|..||+.+|.+|+..||+||++++++|+++.++++
T Consensus 157 ~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~~~ 201 (201)
T cd07622 157 LEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKECLQ 201 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999998763
No 15
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.70 E-value=3.3e-16 Score=117.38 Aligned_cols=86 Identities=14% Similarity=0.263 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||.+|..|...+..|+.+.+.| ++..|+.|+..|+.|++.+
T Consensus 100 ~s~k~~lk~R~~kq~d~e~l~e~l-------------------------------------l~~~ve~a~~~~e~f~~~~ 142 (185)
T cd07628 100 LSLKNLIKLRDQKQLDYEELSDYL-------------------------------------LTDEVENAKETSDAFNKEV 142 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999988777 5557799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+.|++||+.+|..||+.+|.+|+..||+||++++++|+++.|.
T Consensus 143 ~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~~ 185 (185)
T cd07628 143 LKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEPK 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999873
No 16
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.66 E-value=5.2e-15 Score=113.08 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF 96 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~ 96 (133)
.|++++..+.+++.+++|+++.+ +++|. .|.++|..+..|+.+|+.++..+.+||.||+.+|..||
T Consensus 108 ~~~~ar~~~~~~~~~leklk~~~---------~~d~~-----~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~ 173 (211)
T cd07598 108 NTFTARNKELKQLKQLEKLRQKN---------PSDRQ-----IISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDI 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---------Cchhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999998632 12333 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 032820 97 LNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 131 (133)
Q Consensus 97 k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~ 131 (133)
|.+|.+|+..|+.++.+++++|+.....+++|..+
T Consensus 174 K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~~~ 208 (211)
T cd07598 174 KTIFSDFVLIEMLFHAKALEVYTAAYQDIQNIDEE 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999998654
No 17
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.64 E-value=8e-15 Score=113.71 Aligned_cols=94 Identities=17% Similarity=0.363 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.|+|.++..|...+..|+.+.+.|.. |.+++.+|+.+|++++.++ ++|++.+
T Consensus 146 ~slk~vlK~RdqkQ~d~E~l~E~l~~---------------------rre~~~kLe~~ie~~~~~v-------e~f~~~~ 197 (240)
T cd07667 146 ESMKNVLKKRDQVQAEYEAKLEAVAL---------------------RKEERPKVPTDVEKCQDRV-------ECFNADL 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 48899999999999999998888743 2455666666655555444 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+.|++||+..|..|||..|.+||..||+||+.++.+|+.++|
T Consensus 198 ~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~l~ 239 (240)
T cd07667 198 KADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999987
No 18
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4e-13 Score=113.47 Aligned_cols=127 Identities=35% Similarity=0.457 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDK--SRIRKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~--~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
.+++.+|..|.++++.|+.++.++.++++...++.......||.+. ....++..++..|...+..+..++.+++.|++
T Consensus 373 ~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 452 (503)
T KOG2273|consen 373 ESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISE 452 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6899999999999999999999999999999999875433344432 22455555555555555555555566669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhch
Q 032820 80 NNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE-ETSGY 128 (133)
Q Consensus 80 ~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~-~~~~~ 128 (133)
+++.|++||+..|..||+.++..|++.++++++++++.|+.+.| +...+
T Consensus 453 ~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~~~~~~ 502 (503)
T KOG2273|consen 453 RIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPSLEKDI 502 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 99999999999999999999999999999999999999999999 54443
No 19
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.43 E-value=5e-12 Score=95.00 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=49.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 69 VAINEYERI-KENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 69 ~a~~~~e~i-~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
.+..+|+.+ +..++.|++||+.+|..||+.+|++|+..|+.|+++++++|+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 131 VAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466666 6999999999999999999999999999999999999999998764
No 20
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=99.16 E-value=1.1e-09 Score=83.02 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 68 SVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 68 ~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+..+..++.|+..++.||.||+.+|+.|||.++.+|++.||.+|++++.-++..++
T Consensus 142 ~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~ 197 (199)
T cd07626 142 EEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33788999999999999999999999999999999999999999999998887665
No 21
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.88 E-value=8.7e-08 Score=74.75 Aligned_cols=116 Identities=20% Similarity=0.339 Sum_probs=99.2
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRS-SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 2 ~avk~a~~~R~-~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
.|+|++|.+|. -+..+++.+...+.....++..+.+.+ | .++.-+++++..|..-+..+..-...+--+..-
T Consensus 130 ~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~----~---~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~C 202 (246)
T cd07597 130 VSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP----D---VKGAEVDKLEASIIKDKESIANQLNRSWFIREC 202 (246)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC----C---CchhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 48999999999 888999999999999999998888642 1 234677778888876666666655577778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 81 NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 81 ~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
++.|+.+|+.... .+..+|..|+..|+.++..+.+.|+.+.|.+
T Consensus 203 v~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~l 246 (246)
T cd07597 203 ILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPKL 246 (246)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999 9999999999999999999999999998853
No 22
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.87 E-value=8.7e-08 Score=69.19 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
..+.+++..++.|+..|+.++..+..++..|+..+..+|...|..|+..|+.+++++...|+.+.|
T Consensus 128 ~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 128 SKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 457778888999999999999999999999999999999999999999999999999999999877
No 23
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=98.58 E-value=1.3e-06 Score=65.07 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
+..++.|+..|+.+...+..+|+.|...+..-|...|..|+..|..|++++.+.|+.+.|.++
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888999999999999999999999999888888899999999999999999999999999874
No 24
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.56 E-value=1.5e-06 Score=74.39 Aligned_cols=81 Identities=26% Similarity=0.419 Sum_probs=77.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 46 DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 46 ~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
+.++..++..|+.++..++..+..|.+++..|.+++..|+..|...+..|++.+|..|++.++++++.+++.|..+...+
T Consensus 442 e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~l 521 (524)
T COG5391 442 EKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQL 521 (524)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred h
Q 032820 126 S 126 (133)
Q Consensus 126 ~ 126 (133)
.
T Consensus 522 ~ 522 (524)
T COG5391 522 D 522 (524)
T ss_pred h
Confidence 4
No 25
>smart00721 BAR BAR domain.
Probab=98.52 E-value=7.1e-06 Score=62.32 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
.|+.+...|.+.++.|..+...|.+.+... ..+ . -+ .+..++..++.|+..|+.+...+.
T Consensus 135 ~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~------------~~~---~----~~-kl~~~e~el~~ak~~fe~~~~~l~ 194 (239)
T smart00721 135 EIKKARKKLERKLLDYDSARHKLKKAKKSK------------EKK---K----DE-KLAKAEEELRKAKQEFEESNAQLV 194 (239)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhc------------cCC---h----hh-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555554332211 001 1 12 677788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 83 TELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 83 ~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
.|+..|...+..-+...|..|+..|..||.++...++.+.|.+.
T Consensus 195 ~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 195 EELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999875
No 26
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=98.46 E-value=1.3e-05 Score=61.44 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++..|...+..|..+...+.+......+ .+.|+. .+|..++.|+..|+.++..+
T Consensus 104 ~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~k--------------de~KL~-------kae~el~~Ak~~Ye~lN~~L 162 (211)
T cd07588 104 PEVKKRIAKRGRKLVDYDSARHNLEALKAKKKV--------------DDQKLT-------KAEEELQQAKKVYEELNTEL 162 (211)
T ss_pred HHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccc--------------cHhhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998888777766554430 134444 47778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
+.|++.|-.-|..-|...|..++..|..|+.++..+-..+...+.+.+|
T Consensus 163 ~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l~~ 211 (211)
T cd07588 163 HEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGLAD 211 (211)
T ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999998888887776543
No 27
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.37 E-value=2.2e-05 Score=60.19 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|..-++.|..+.+.+.+...... .-..|+.+ +|..++.|+..|+.++..+
T Consensus 104 ~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~--------------kDe~KL~k-------Ae~el~~Ak~~ye~lN~~L 162 (211)
T cd07611 104 PDIKNRIAKRSRKLVDYDSARHHLEALQTSKR--------------KDEGRIAK-------AEEEFQKAQKVFEEFNVDL 162 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc--------------ccHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999888877776654331 11345554 5666788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
+.|++.|-.-|..-|-..|..++..|..|+.++..+-..+-..+.+.
T Consensus 163 k~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 163 QEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887777666554
No 28
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.33 E-value=3.3e-05 Score=59.24 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|..-++.|..+.+.+.+.+.... ....| +..+|..++.|+..|+.+++.+
T Consensus 104 ~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~--------------kD~~K-------L~kAe~el~~Ak~~ye~lN~~L 162 (211)
T cd07612 104 PDVKERVAKRGRKLVDYDSARHHLEALQNAKK--------------KDDAK-------IAKAEEEFNRAQVVFEDINREL 162 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc--------------ccHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999887777776654321 01244 4456667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 129 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~ 129 (133)
+.|++.|-.-|..-|-..|..++..|..|+.++..+-..+...+.+.+
T Consensus 163 ~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l~ 210 (211)
T cd07612 163 REELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKLE 210 (211)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998888877776554
No 29
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=98.33 E-value=5.7e-06 Score=64.42 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
...++..+..-+.|+-.++-|+..|+.+|..||++++..|+..||.||++++.-|+..+..
T Consensus 175 ~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~~ 235 (237)
T PF10456_consen 175 QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQQ 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677788899999999999999999999999999999999999999999999988754
No 30
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.30 E-value=3.8e-05 Score=59.43 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|...+..|..+.+.+.+..... .|-.. +..+..++..++.|+..|+.++..+
T Consensus 108 ~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~------------------~k~~~-~~KL~kae~el~~Ak~~ye~~N~~L 168 (225)
T cd07590 108 PSVNAAIKRREQSLQEYERLQAKVEKLAEKE------------------KTGPN-LAKLEQAEKALAAARADFEKQNIKL 168 (225)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc------------------cCChh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988877766666444322 11111 3344566777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
+.|++.|-.-|..-|.-.|..|+..|..||..+-..-..+.+.+..
T Consensus 169 ~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~ 214 (225)
T cd07590 169 LEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN 214 (225)
T ss_pred HHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999888777776644
No 31
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=98.12 E-value=8.7e-05 Score=60.46 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|.|+.+..|.++|..|++|--.|++.|+. ..+|..+|..-..|=+.|+.|++..
T Consensus 298 ~aakdllyRr~Rcl~~ye~ank~l~kar~k-------------------------nkdv~~ae~~q~e~c~kfe~~s~~~ 352 (399)
T KOG1660|consen 298 CAAKDLLYRRERCLADYEAANKNLEKARAK-------------------------NKDVHAAEAAQQEACQKFESISESA 352 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhc-------------------------cccchhHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888876666644432 1456667777777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
++|+--|..-|++-|+.-|.+.+++-|++++.-++.-...+..+.+
T Consensus 353 k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~~~lk~ 398 (399)
T KOG1660|consen 353 KEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCLLALKE 398 (399)
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988888877766654
No 32
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.08 E-value=0.0003 Score=54.14 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 032820 60 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 131 (133)
Q Consensus 60 I~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~ 131 (133)
|..++..+..|.-+-..-...+-+-++.|+++|..|+|.+|.+|+...+.|+.+.+++|..-...+++|..+
T Consensus 144 isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i~~id~e 215 (219)
T PF06730_consen 144 ISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDIQNIDEE 215 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 444555555556666666677777889999999999999999999999999999999999999999888654
No 33
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.08 E-value=0.00022 Score=54.99 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|...+..|..+...+.+......+ + + ..+..++..++.|+..|+.+++.+
T Consensus 109 ~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~k-------------d-~-------~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 109 PEINEAIKKRNHKLLDYDAARAKVRKLIDKPSE-------------D-P-------TKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred hhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccC-------------C-H-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999988877765432210 0 2 445667777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
++|+++|-.-|..=|-..|.+|+..|..++...-..-..+.+.+.
T Consensus 168 k~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 168 KTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD 212 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999877666555555443
No 34
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.96 E-value=0.00021 Score=54.53 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVT---EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 51 ~K~~~l~~eI~~~---e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
.|+.+.+.-..+. ...++..+..-+.|+-.+.-|+..|+.+|..||++++..|+.-||.||+++..--+..++
T Consensus 130 ~KvkE~~k~~~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~ 205 (207)
T cd07669 130 AKVKESQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLR 205 (207)
T ss_pred HHHHHHHHhhHHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444333222 233445778889999999999999999999999999999999999999998877666554
No 35
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00018 Score=60.44 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+..+.+|...|+.|..+.+.+++.+..+.|-. .|+.+ +|..++.|++.|+.++...
T Consensus 122 pdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~--------------~k~~K-------AeeEl~~Aq~~fE~lN~~L 180 (460)
T KOG3771|consen 122 PDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDE--------------AKLAK-------AEEELEKAQQVFEELNNEL 180 (460)
T ss_pred hhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCCh--------------hhhHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888877766663222 33333 7888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 131 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~ 131 (133)
++|+..+=..|+.-|..+|..+..+|.-||..+...-.++...+..+.+-
T Consensus 181 ~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 181 LEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998888766554
No 36
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=97.94 E-value=0.00022 Score=54.46 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 65 DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 65 ~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
..++..++.-+.|+=.+.-|+..|+.+|..|||.++..|+.-||.+|+++..--+..++..
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~y 207 (210)
T cd07668 147 QDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRF 207 (210)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677888999999999999999999999999999999999999999988777666543
No 37
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.86 E-value=0.00036 Score=53.16 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 66 AKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 66 ~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
..+...+.-+.||=.+.-||..|+.+|..|||.++..|+.-||.||+++..--+..++
T Consensus 148 ~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~~~l~ 205 (207)
T cd07670 148 KADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLEEALQ 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445778889999999999999999999999999999999999999998876555443
No 38
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=97.79 E-value=0.00085 Score=52.61 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGD-KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~-~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
+....++...-|++.+|.++.+.... .|+. ..-..|+..|+.++++++.+++.+++.|.. ++=.| ..
T Consensus 125 K~RkkLe~~RLD~D~~K~r~~~a~~~----~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~-l~ 192 (246)
T cd07618 125 KQRKQLAKLVLDWDSARGRYNQAHKS----SGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNF-AS 192 (246)
T ss_pred HHHHHHHhHHhhHHHHHHHHHhcccc----CccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHH-HH
Confidence 34445566666666666665443321 1221 011478999999998888888888888776 66666 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 032820 92 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 129 (133)
Q Consensus 92 k~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~ 129 (133)
+..+.-.-|..|+..|+.|+++.+++-+.+.|.+++..
T Consensus 193 ~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~ 230 (246)
T cd07618 193 KEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQ 230 (246)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997754
No 39
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=97.69 E-value=0.0013 Score=51.48 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
..|++.++.++.+++.+.+.+++.+ -.+|-.| ..+..|+-.-|..|+..|+.|++++++.-+.+.|.++.-
T Consensus 157 ~~K~~~l~eE~e~ae~k~e~~~e~~-------~~~M~~~-l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~ 227 (244)
T cd07595 157 AAKVDALKDEYEEAELKLEQCRDAL-------ATDMYEF-LAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQ 227 (244)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766666655555544 4444444 455788999999999999999999999999999999765
No 40
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=97.67 E-value=0.0025 Score=48.49 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|.+.+..|..+...+.+....+.++. .++ +..+..++..++.|+..|+.++..+
T Consensus 110 ~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~-----------~kd------~~kl~kae~~l~~a~~~y~~lN~~L 172 (216)
T cd07599 110 KKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELS-----------LKD------EKQLAKLERKLEEAKEEYEALNELL 172 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCC-----------hhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888876111111000 111 2445556677789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 116 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~ 116 (133)
+.|++.|-.-+..=|-.++..|...|..+|..+-.
T Consensus 173 k~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~ 207 (216)
T cd07599 173 KSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHE 207 (216)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986543
No 41
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=97.51 E-value=0.0025 Score=48.12 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
.++.++.+|.+.+..|..+...+.+ +..++..++.|+.+|+.++...+
T Consensus 103 ~~~k~I~KR~~KllDYdr~~~~~~k--------------------------------~~k~e~~l~~a~~~y~~lN~~L~ 150 (195)
T cd07589 103 GPQKLIQKRYDKLLDYERYKEKKER--------------------------------GGKVDEELEEAANQYEALNAQLK 150 (195)
T ss_pred hHHHHHHHHhhhhccHHHHHHHHHh--------------------------------hcchHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665554432 22367788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 83 TELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 116 (133)
Q Consensus 83 ~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~ 116 (133)
+|+++|-.-+..=|...|..|+..|..++..+.+
T Consensus 151 ~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 151 EELPKFNQLTAQLLETCLKSFVELQRDLYDTLLK 184 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986654
No 42
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.36 E-value=0.0077 Score=47.46 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 15 LLTVQTLLSELSSLQMRAEKLEAASSKIFGGD--------KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELE 86 (133)
Q Consensus 15 ~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~--------~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~ 86 (133)
..+++.+.-|.+.+|.+..+....++...|.. .....|+..+..++.+++.+++.+++.|. .++=
T Consensus 127 rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~-------a~My 199 (257)
T cd07620 127 KKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYS-------ADLY 199 (257)
T ss_pred HHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 34455566666666666544332222212110 01247888889998888888887777764 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 87 RLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 87 RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
.| ..+..++-+-|..|++.|..|+++.+..-+.++|.++..
T Consensus 200 nf-l~kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~~ 240 (257)
T cd07620 200 HF-ATKEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKEN 240 (257)
T ss_pred HH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 567888999999999999999999999999999999754
No 43
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.31 E-value=0.0095 Score=46.81 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKS---RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 89 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~---r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~ 89 (133)
+....++...-+++.+|.++... ++.+|+..+ -..|.+.+..++++++...+.+++.+ -.++=.|
T Consensus 125 k~RK~Le~~RLD~D~~K~r~~~a----~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~-------~~~m~~~- 192 (248)
T cd07619 125 KQRKHLAKLVLDMDSSRTRWQQS----SKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQL-------SADMYSF- 192 (248)
T ss_pred HHHHHHHhhHhhHHHHHHHHHhc----cccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhh-------HHHHHHH-
Confidence 34455566666666666655422 222322110 02456777777777777777765554 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 90 KERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 90 ~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
..+..|.-+-|..|+..|+.|+++.++.-+.+.|.+.+..+
T Consensus 193 l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 193 VAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555669999999999999999999999999976543
No 44
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=97.18 E-value=0.017 Score=44.44 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
..++..++.|+.+|+...+.+...+..| .+...+...-|..|++.|+.||+++.++-+.+.....
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i-~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~ 209 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAI-KESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWP 209 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5578888889999999999999999988 5566788899999999999999999998887776543
No 45
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=96.89 E-value=0.032 Score=43.18 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
.+..++.|+.+|+...+.+...+..|-. ...+...-|..|++.|+.||+++.+.-+.+.|.++.
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQE 218 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999999999988844 568899999999999999999999999999999864
No 46
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=96.82 E-value=0.027 Score=43.63 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
+..++.|+.+|+...+.+...+..|-. ...+.-.-|.+|++.|+.||+++.++-+.+.|.+..
T Consensus 156 eeElr~A~~kFees~E~a~~~M~n~l~-~e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 156 DEELRQALEKFDESKEIAESSMFNLLE-MDIEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999988888844 434777899999999999999999999999999864
No 47
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=96.77 E-value=0.035 Score=42.99 Aligned_cols=63 Identities=11% Similarity=0.236 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
+..++.|+.+|+..++.+...+..| .+...|.-.-|..|++.|+.|++++.++-+.+.|.++.
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~-le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNF-LENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888999999998888888 66778888999999999999999999999999999863
No 48
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.41 E-value=0.13 Score=40.36 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+...++.|+++|....+....-|..+-.. .+...-|..|+..|+.||+++.+.=+.+.|.
T Consensus 182 ~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 182 ARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455567777777777777777777333 7899999999999999999999998888775
No 49
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.27 E-value=0.34 Score=36.77 Aligned_cols=67 Identities=7% Similarity=0.147 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
.++.++...+..++..|...+=...--+.-.+.-|.-||...|..|...|..|+.++.++|+.+-|-
T Consensus 133 ~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py 199 (200)
T cd07603 133 QEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc
Confidence 5788888999999999999998888899999999999999999999999999999999999998874
No 50
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=95.98 E-value=0.21 Score=38.87 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
..++..++.|+.+|+.-.+.+..=|..+ .+-..+...-|.+|+..|+.||+++.++=+.+.+.+
T Consensus 166 ~~~e~elr~Ae~kF~~~~E~a~~~M~~i-~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 166 EQAEQDLRVAQSEFDRQAEITKLLLEGI-SSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQL 229 (229)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566666777788877777665555544 222357778899999999999999999888877653
No 51
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=95.91 E-value=0.18 Score=39.07 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 65 DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 65 ~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
..+..|+.+|+.-++.+...+..| .+...+...-|..|++.|+.||+++.++-+.+.+.++
T Consensus 157 eelr~a~ekFees~E~a~~~M~~i-l~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 157 EELRQAMEKFEESKEVAETSMHNL-LETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566668888888888888777 5566788899999999999999999999999999886
No 52
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=95.71 E-value=0.59 Score=36.38 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+..+..|+.+|+.-.+.+..=+..+. +...++..-|..|++.|+.||+++.++-+.+...
T Consensus 169 e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 169 EQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556677777776666665444442 4467888999999999999999999887766543
No 53
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=95.51 E-value=0.82 Score=35.15 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
.++...++.++..|....=...-=|.-.+.-|..||...+..|...|..|++++.++-+.+-|-+.
T Consensus 148 ~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~ 213 (215)
T cd07604 148 AEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIE 213 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 577889999999998888777777888999999999999999999999999999999999999765
No 54
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.65 E-value=1.6 Score=33.94 Aligned_cols=79 Identities=5% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
..|+.++..+....-......+.+|..=-..+-..++.|+.+|..-||..|..|+...-......-+.-+.+...+..+
T Consensus 156 ~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~i 234 (261)
T cd07648 156 EAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDEL 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 3555666666666666666666677666667778889999999999999999999998777766666777777666655
No 55
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.92 E-value=1.2 Score=33.90 Aligned_cols=68 Identities=9% Similarity=0.245 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
..++.++...+..++..|...+=.----|.-.+.-|.-+|.+.|..|+..|+.|+.++-+.-..+-|-
T Consensus 132 ~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py 199 (200)
T cd07638 132 QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPY 199 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 46778999999999999999998888899999999999999999999999999999999888777663
No 56
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.75 E-value=2.3 Score=32.35 Aligned_cols=65 Identities=14% Similarity=0.257 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 59 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 59 eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
++.+++..+..++..|....=...-=|...+.-|.-+|...|..|+..|..|++++.+.-..+.|
T Consensus 137 ~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p 201 (202)
T cd07606 137 ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46688888999999999988888888899999999999999999999999999999988766655
No 57
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.68 E-value=2.5 Score=32.43 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
...++.|+.+|..=|+..|..|+..
T Consensus 195 ~~~~Q~lEe~Ri~~lk~~l~~~a~~ 219 (236)
T cd07651 195 LDDFQDLEEERIQFLKSNCWTFANN 219 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655543
No 58
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=93.60 E-value=1.2 Score=34.15 Aligned_cols=67 Identities=3% Similarity=0.095 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+.++.++...+...+..|...+=.----|...+.-|.-+|.+.|..|+..|+.++.++-+.-..+.|
T Consensus 139 ~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~ 205 (207)
T cd07635 139 EPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH 205 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 3477799999999999999999888889999999999999999999999999999999988777766
No 59
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=93.43 E-value=1.4 Score=33.76 Aligned_cols=67 Identities=7% Similarity=0.196 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
..++.+++..+..++..|...+=.----|.-.+.-|.-+|.+.|..|+..|+.|+.++-++-..+-|
T Consensus 139 ~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~p 205 (207)
T cd07602 139 ENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP 205 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 4678888899999999999999888888999999999999999999999999999999988777766
No 60
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=93.15 E-value=1.8 Score=33.22 Aligned_cols=66 Identities=5% Similarity=0.149 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
.+|.+++..+...+..|..++=.-.--|...+.-|.-+|.+.|..|+..|.-||.++-+.-..+.|
T Consensus 140 ~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~ 205 (207)
T cd07636 140 SQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 488999999999999999999999999999999999999999999999999999999888777766
No 61
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=93.13 E-value=3.1 Score=31.93 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNR---------------TELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~---------------~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
.+++++...+......++.|+.+|..-..... ..++.|+.+|...|+++|..|+..-......+.
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~ 240 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIA 240 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777777777777778877755544443 446788888888888888888877666655544
Q ss_pred HHH
Q 032820 116 NVW 118 (133)
Q Consensus 116 ~~W 118 (133)
+.=
T Consensus 241 ~~~ 243 (251)
T cd07653 241 KCL 243 (251)
T ss_pred HHH
Confidence 433
No 62
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=92.81 E-value=1.8 Score=33.20 Aligned_cols=67 Identities=6% Similarity=0.144 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
..++.+++..++.++..|...+=.-.--|...+.-|.-||...|..|+..|..|+.++-++-..+.|
T Consensus 139 ~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p 205 (207)
T cd07634 139 ESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP 205 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 3578899999999999999999888899999999999999999999999999999999998877766
No 63
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.75 E-value=3.4 Score=31.39 Aligned_cols=67 Identities=6% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
.++.++...+..++..|...+=..---+.-.+.-|.-+|...|..|+..|..|+.++-++-..+-|-
T Consensus 133 ~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py 199 (200)
T cd07637 133 HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 4778889999999999999999999999999999999999999999999999999999988777663
No 64
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=92.52 E-value=4.6 Score=32.36 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 58 ETIRVTEDAKSVAINEYERIKEN---NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~---~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
.+|+.+|+.+..|+.+||.-.+. .++=|.--|..-- .-|.+|++.|+.||.+|-+.--.+-.++.+.
T Consensus 196 ~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~nhL----rCL~dFVeaQmtyYAQcyq~MlDLQkqLg~f 265 (375)
T KOG3725|consen 196 FTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHNNHL----RCLRDFVEAQMTYYAQCYQLMLDLQKQLGGF 265 (375)
T ss_pred chHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46778888888999999865444 3344443333333 3467899999999999988877777776654
No 65
>PRK11546 zraP zinc resistance protein; Provisional
Probab=92.20 E-value=2.1 Score=31.00 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 12 SSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 12 ~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
.+.+-....+.+.|-.|+.++..|... .++.+.||..|..||.++..++.+-+-.|+.
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~-------~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTA-------NPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667788888888888877652 3356799999999999999988877766543
No 66
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=92.18 E-value=4.4 Score=31.36 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+..+..|+.+|+.-.+..+.=+..+- +-..+-..-|.+|+..|+.||+++.++-..+.+.
T Consensus 160 e~elr~A~~kf~~~~E~a~~~M~~il-~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 160 EHELRVAQTEFDRQAEVTRLLLEGIS-STHVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666677777666655444333331 1123566778999999999999999988877664
No 67
>PRK14155 heat shock protein GrpE; Provisional
Probab=92.07 E-value=2 Score=32.95 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|.+.....-...|-.-|+.-++
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~D 74 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAAD 74 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 57899999999999999999999999999999999998877766665555544433
No 68
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.90 E-value=5 Score=31.38 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
.|+.++..++.....+.+.++..|+.--..+-.-++.|+.+|..-|+++|..|+...-...-..-..-+.+...+.++
T Consensus 157 ~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~i 234 (261)
T cd07674 157 LKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENV 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhC
Confidence 444555555555555555556666555555667889999999999999999998654333333444444444444443
No 69
>PRK14151 heat shock protein GrpE; Provisional
Probab=91.90 E-value=2.3 Score=31.70 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|.+.....=...|-.-|+.-++
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~D 81 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVD 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 57889999999999999999999999999999999998877666655555544433
No 70
>PRK14163 heat shock protein GrpE; Provisional
Probab=91.76 E-value=2.5 Score=32.61 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|.+.....-...|-.-|+.-++.
T Consensus 46 ~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDn 102 (214)
T PRK14163 46 TAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDD 102 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Confidence 578899999999999999999999999999999999998877777666666554443
No 71
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=91.76 E-value=4.7 Score=30.80 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 60 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 60 I~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
+..+..++..++..|+.....+..=|+-++..|..+|..-|.-|......|+..+.+.-+..+.
T Consensus 136 ~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~ 199 (201)
T cd07660 136 LEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3448888899999999999999999999999999999999999999999999988877666543
No 72
>PRK14140 heat shock protein GrpE; Provisional
Probab=91.75 E-value=2.9 Score=31.67 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.+|.+++...-.++.+|+++.+++.+|++....-=...|-.-|+.-++.
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999987766666665555554443
No 73
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=91.69 E-value=5.2 Score=32.20 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 62 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 62 ~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
.+...++.+.++|-..++....+|..+ -...++-..|..|+..|..|++.+++.-+.+++.+.
T Consensus 226 ~~r~~lE~aEDeFv~aTeeAv~~Mk~v--l~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l~ 288 (289)
T PF10455_consen 226 QLRVELEQAEDEFVSATEEAVEVMKEV--LDNSEPLRLLKELVKAQLEYHKKAAEALSELLKSLD 288 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556677788888888888888876 345667789999999999999999999999888763
No 74
>PRK14149 heat shock protein GrpE; Provisional
Probab=91.61 E-value=2.4 Score=32.10 Aligned_cols=57 Identities=7% Similarity=-0.032 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 49 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 49 r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
+.++++.|+.++.++..+.-.+..+|+++.+++.+|.+....-=...|-.-|+.-++
T Consensus 41 ~~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlD 97 (191)
T PRK14149 41 EGEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVID 97 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 468999999999999999999999999999999999998876666555555444333
No 75
>PRK14161 heat shock protein GrpE; Provisional
Probab=91.44 E-value=2.9 Score=31.24 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..|+.++.++..+.-.++.+|+++.+++.+|.+.....=...|-.-|+.-++
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~D 80 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSD 80 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 57888999999999999999999999999999999998877766666555554433
No 76
>PRK14147 heat shock protein GrpE; Provisional
Probab=91.23 E-value=2.9 Score=31.06 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..+++.|+.++.++..+.-.+..+|+++.+++.+|.+.....=...|-.-|+.-++
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~D 79 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFD 79 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999998877766666555554433
No 77
>PRK14139 heat shock protein GrpE; Provisional
Probab=91.02 E-value=3.6 Score=31.03 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.++.++..+.-.+..+|+++.+++.+|.+....-=...|-.-|+.-++.
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~Dn 94 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDS 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 468999999999999999999999999999999999988777666665555544443
No 78
>PRK14154 heat shock protein GrpE; Provisional
Probab=90.90 E-value=3.8 Score=31.50 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|.+.....-...|-.-|+.-++
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlD 113 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVAD 113 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56899999999999999999999999999999999998887777555554444333
No 79
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.86 E-value=5.9 Score=30.21 Aligned_cols=66 Identities=8% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
.+|.++...+..++..|....=.-.--|.-.+.-|.-||...|..|+..|..|+.++-++-..+-|
T Consensus 133 ~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 133 QEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 388999999999999999998888889999999999999999999999999999999988877766
No 80
>PRK14141 heat shock protein GrpE; Provisional
Probab=90.80 E-value=3.2 Score=31.84 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 49 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 49 r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
-..++..++.++.++..+.-.++.+|+.+.+++.+|++....-=...|-.-|+.-+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpVi 91 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVS 91 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35799999999999999999999999999999999999887766655555444433
No 81
>PRK14157 heat shock protein GrpE; Provisional
Probab=90.79 E-value=2.9 Score=32.54 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|.+++...=...|-.-|+.-+
T Consensus 83 ~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvl 137 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPAL 137 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999999999999987776665555444433
No 82
>PRK14158 heat shock protein GrpE; Provisional
Probab=90.59 E-value=3.9 Score=31.03 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++..++.+|.+....-=...|-.-|+.-++
T Consensus 46 e~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~D 101 (194)
T PRK14158 46 EEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVD 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 35566677777778888888899999999999999988877766665555554443
No 83
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.45 E-value=5 Score=36.14 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 032820 4 VRSAFTDRSSALLTVQTL-LSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAIN-------EYE 75 (133)
Q Consensus 4 vk~a~~~R~~~~~~~q~a-~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~-------~~e 75 (133)
|+..+..|++.+...-.- ..+|...+..+..+.....+ -.+|++.+...=+.+.++++..-. .+.
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~-------LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS 631 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK-------LAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLS 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 455666666655543332 33444444444444321100 023333333333333333332222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 76 RIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 116 (133)
Q Consensus 76 ~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~ 116 (133)
.....+++|+++++.+ ..+|++.+.. +...+.+++..++
T Consensus 632 ~AEr~~~~EL~~~~~~-l~~l~~si~~-lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 632 EAEREFKKELERMKDQ-LQDLKASIEQ-LKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 4567788888888775 6778877776 4566666554444
No 84
>PRK14144 heat shock protein GrpE; Provisional
Probab=90.29 E-value=4.3 Score=30.96 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.++.++..+.-.++.+|+++..++.+|.+.....=...|-.-|+.-++.
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~Dn 107 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 578999999999999999999999999999999999988777766666555554443
No 85
>PRK14143 heat shock protein GrpE; Provisional
Probab=90.00 E-value=4.7 Score=31.56 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..|+.++.++..+.-.+..+|+++.+++.+|.+.+...=...|-.-|+.-++
T Consensus 73 ~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~D 128 (238)
T PRK14143 73 EQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVD 128 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777788888899999999999999988877666655555554444
No 86
>PRK14156 heat shock protein GrpE; Provisional
Probab=89.88 E-value=4.6 Score=30.22 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|++.....=..+|-.-|+.-++
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlD 88 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 57889999999999999999999999999999999998776666655555544433
No 87
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=89.82 E-value=7.7 Score=29.96 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 62 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 62 ~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
++...++.++..|...-=...-=|.-.+.-|..|+-..+..|...|..|++++.+.-+.+-|.++.
T Consensus 149 E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~ 214 (215)
T cd07642 149 EIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEK 214 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666654444433355568888999999999999999999999999999999998763
No 88
>PRK14145 heat shock protein GrpE; Provisional
Probab=89.79 E-value=5.3 Score=30.37 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
..++..++.++.++..+.-.+..+|+++.+++.+|.+.....-...|-.-|+.-++..
T Consensus 51 ~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnL 108 (196)
T PRK14145 51 KQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNF 108 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 4667888888888888889999999999999999999988877777766666555444
No 89
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=89.77 E-value=4.9 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 56 LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 56 l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
++.....+...++.|++......+-.+.|++.+..-=.+||..+...|..
T Consensus 9 ~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 9 LEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999988888777
No 90
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=5.6 Score=30.02 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..|+.++.++..+.-.++.+|+.+.++..+|++-...--...|..-|+.-++.
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDn 98 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDN 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999988877766666555544443
No 91
>PRK14153 heat shock protein GrpE; Provisional
Probab=89.18 E-value=5.7 Score=30.15 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..+++.++.++.++..+.-.++.+|+++.+++.+|.+.....=...|-.-|+.-++
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~D 94 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTD 94 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 46788899999999999999999999999999999888776666555555444333
No 92
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=89.07 E-value=9.3 Score=29.85 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN--------------RTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~--------------~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+..+++++..+...+..++.++.+|......+ -..++.|+.+|..-|+.+|..|...
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999999999998887776543 3445556666666666666666553
No 93
>PRK14148 heat shock protein GrpE; Provisional
Probab=88.96 E-value=6.4 Score=29.88 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..|+.++.++....-.++.+|+++.+++.+|.+.....=...|-.-|+.-++.
T Consensus 46 ~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~Dn 102 (195)
T PRK14148 46 KDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDS 102 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 477888888899999999999999999999999999988776666655555544443
No 94
>PRK14159 heat shock protein GrpE; Provisional
Probab=88.86 E-value=6.4 Score=29.42 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
+.++..++.++.++....-.++.+|+++.+++.+|.+.....=...|-.-|+.
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLp 81 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLD 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999999998776655554444443
No 95
>PRK14146 heat shock protein GrpE; Provisional
Probab=88.10 E-value=7.3 Score=30.00 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..++..++.++.++..+.-.++.+|+++.+++.+|++.....-...|-.-|+.-++
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~D 115 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPID 115 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 46788899999999999999999999999999999998877766666555554443
No 96
>PRK14162 heat shock protein GrpE; Provisional
Probab=87.79 E-value=8.1 Score=29.33 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
..++..++.++.++..+.-.++.+|+++..++.+|.+.....=...|-.-|+.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLp 97 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLP 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888889999999999999999999999887766655444444433
No 97
>PRK14160 heat shock protein GrpE; Provisional
Probab=87.53 E-value=11 Score=28.96 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.++.++..+.-.++.+|+.+.+++.+|.+.....=..+|-.-|+.-++.
T Consensus 67 ~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 467788888888888889999999999999999999887766666555554444433
No 98
>PRK14164 heat shock protein GrpE; Provisional
Probab=87.52 E-value=7.8 Score=29.96 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+..+..|+.++.++..+.-.++.+|+++.+++.+|++.....=...|-.-|+.-+..
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDn 132 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDD 132 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 578999999999999999999999999999999999988776666665555554433
No 99
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=87.47 E-value=12 Score=29.02 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 032820 62 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN----VWAKVAEETS 126 (133)
Q Consensus 62 ~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~----~We~~~~~~~ 126 (133)
+....+...+..|..++=.----|...+.-|.-+|.+.|..|+..|+.|+.++-+ -|+.|...+.
T Consensus 143 ea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~ 211 (215)
T cd07631 143 EVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIG 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3555566677778777777777788899999999999999999999999999888 5555555543
No 100
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.91 E-value=13 Score=29.11 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERI---------------KENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKI 114 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i---------------~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~ 114 (133)
...+++++.....-.+.++.++.+|..- ...+..-++.|+..|...|+++|..|+...-.....+
T Consensus 162 k~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i 241 (253)
T cd07676 162 KADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPII 241 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4666678888888888888888775433 3345566799999999999999999998877666544
Q ss_pred H
Q 032820 115 A 115 (133)
Q Consensus 115 ~ 115 (133)
.
T Consensus 242 ~ 242 (253)
T cd07676 242 G 242 (253)
T ss_pred H
Confidence 3
No 101
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.84 E-value=12 Score=28.70 Aligned_cols=67 Identities=3% Similarity=0.059 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
..++.++...+...+..|-.++=.----|.-.+.-|.-|+-+.+..|+..+.-+|.++-+.-..+.|
T Consensus 139 ~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~ 205 (207)
T cd07633 139 ESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLP 205 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 4689999999999999999888888888889999999999999999999999999999888777665
No 102
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=86.74 E-value=8.2 Score=26.60 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=42.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 62 VTEDAKSVAIN----EYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 62 ~~e~~v~~a~~----~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
++...|..|++ .+....+....||+-|..+|..+|+.-...++..+=....++-+-=..=+..+..
T Consensus 17 ~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~ 86 (108)
T KOG1772|consen 17 RAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKT 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 34444455544 4666777788889999999999999888888666655555544333333333333
No 103
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=86.61 E-value=15 Score=29.40 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 87 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~R 87 (133)
..-+.+..|.-.|..+.++...-.++--.+ +...|+..|++|+..+|.....+...+.+|+....+|--.
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~ 201 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKYKD-PQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYS 201 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Confidence 334445555555555555532211111011 2347999999999999999999999998888776655443
No 104
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.83 E-value=10 Score=26.93 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..|...+..|..-....+++...+.++....+.|...-.+ -..+++.++.++..++.....++..+......+
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~r-------L~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVER-------LKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999888888753211 147777777777777777777777777776666
Q ss_pred HHHHHHHHH
Q 032820 82 RTELERLDK 90 (133)
Q Consensus 82 ~~E~~RF~~ 90 (133)
+.+-+-+.+
T Consensus 111 k~~kee~~k 119 (151)
T PF11559_consen 111 KQEKEELQK 119 (151)
T ss_pred HHHHHHHHH
Confidence 666554443
No 105
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.59 E-value=16 Score=28.83 Aligned_cols=117 Identities=9% Similarity=0.137 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch--hcccCCCc---cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 12 SSALLTVQTLLSELSSLQMRAEKLEAAS--SKIFGGDK---SR-IRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 85 (133)
Q Consensus 12 ~~~~~~~q~a~~~L~~kr~~~~kl~~~~--sr~~g~~~---~r-~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~ 85 (133)
.++.+.|++....|.+-+...+..-..- .+-.|..+ .+ ..|+..++.+....-......+..|+.--..+-..+
T Consensus 119 ~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 119 LEAVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665555442110 00011111 00 223334444444444444444555555555566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 86 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 86 ~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
+.++.+|..-|+++|..|+..--.-+-..-..-+.+...++++
T Consensus 199 Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~ 241 (269)
T cd07673 199 QDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANT 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhC
Confidence 8899999999999999999854444344445555555555444
No 106
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=85.06 E-value=9.1 Score=33.49 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 8 FTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 87 (133)
Q Consensus 8 ~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~R 87 (133)
+..|......++.==.+....+++++.+. .+..+|+..+.. ++..--.+|+.|.+.|..|+++
T Consensus 500 ~eqr~~Yk~dF~~eY~EYreLharve~vs--------------~rF~~Lea~L~s---rls~gS~ey~~i~~qI~qEYek 562 (604)
T KOG4796|consen 500 LEQRQRYKKDFEAEYDEYRELHARVETVS--------------RRFRQLEAQLKS---RLSPGSPEYKQIEKQILQEYEK 562 (604)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHh---ccCCCCCcHHHHHHHHHHHHHH
Confidence 44555555444444344444444443332 455555555433 5555567889999999999999
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 88 LDK--------ERRADFLNMLKGFVVNQVGYAEKIANVWA 119 (133)
Q Consensus 88 F~~--------ek~~d~k~~l~~fa~~qi~~~~~~~~~We 119 (133)
|+. +|-.+|+.-|...=.+=.+|=++....|.
T Consensus 563 i~~dp~y~eeK~RceYLhsKLaHIK~lI~efDk~~~~s~s 602 (604)
T KOG4796|consen 563 IRKDPNYMEEKQRCEYLHSKLAHIKTLIGEFDKQQRSSWS 602 (604)
T ss_pred hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 863 44455555554433333334444445553
No 107
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=84.85 E-value=15 Score=28.03 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 59 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKV 121 (133)
Q Consensus 59 eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~ 121 (133)
++......+..++..|+.....+..=|+-.+..|..+|...|.-|......|+..+...-+.+
T Consensus 138 k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 138 RLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 466667888999999999999999999999999999999999999888888887776655443
No 108
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.43 E-value=17 Score=28.05 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchh
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA-KVAEETSGYA 129 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We-~~~~~~~~~~ 129 (133)
.+++..+..++..|....=.-.-=|.-.+.-|.-+|.+.|..|+..|+.|++++-+.-. .+-|-+..+.
T Consensus 142 ~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~ 211 (215)
T cd07601 142 IEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDIN 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999988888899999999999999999999999999999988876 6666665543
No 109
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=83.54 E-value=18 Score=27.88 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 032820 59 TIRVTEDA--KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIA----NVWAKVAEETS 126 (133)
Q Consensus 59 eI~~~e~~--v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~----~~We~~~~~~~ 126 (133)
++.+++.. +..++..|-.++=.----|.-.+.-|.-+|-+.|..|+..|+.++.++- +-|+.|+.-+.
T Consensus 138 E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~ 211 (215)
T cd07632 138 EKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVS 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444443 7788888877766666677788889999999999999999999998865 56777766544
No 110
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=82.90 E-value=19 Score=27.57 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 60 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVA 122 (133)
Q Consensus 60 I~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~ 122 (133)
+..++..|..++..||...-.+..=|+-....|..=|...|.-|=.....|+++...+...+.
T Consensus 139 fr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~ 201 (204)
T cd07661 139 FRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIH 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788899999999999999999999999998888888876666655555555544443
No 111
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=82.46 E-value=12 Score=26.87 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++..++.++.++......+..+|+.+.+++.+|.++....-...|-.-|+..++.
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~ 73 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDN 73 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999999888776666655555555543
No 112
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.60 E-value=49 Score=31.36 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDK-SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL-DK- 90 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~-~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF-~~- 90 (133)
+...++.....+...+.+++.+.......+|.+. ....|++.|+.+|..++..+...+.++++|.+.++.+=+.- +.
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~ 442 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIE 442 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444455555555555544434444443 45799999999999999999999999999998887765543 22
Q ss_pred HHHHHHHHHHHHH
Q 032820 91 ERRADFLNMLKGF 103 (133)
Q Consensus 91 ek~~d~k~~l~~f 103 (133)
.+..+++..+.++
T Consensus 443 ~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 443 GEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 113
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=80.59 E-value=29 Score=28.19 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 20 TLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNM 99 (133)
Q Consensus 20 ~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~ 99 (133)
...-..++|-..+-++..- | ....|+++....|..+..++..|-+-.+.++.+| ++-|..+|---
T Consensus 106 ~~r~~yeKK~~~Lr~~d~k-----g---~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I-------~kLRDeEL~PQ 170 (312)
T PF04782_consen 106 KLRIEYEKKCKQLRKQDAK-----G---ADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRI-------EKLRDEELYPQ 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHhC-----C---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3445566666776666642 2 2358999999999999999999999999999887 46677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 100 LKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 100 l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
|...+.+ +..+|..+.++
T Consensus 171 L~eLi~G-------l~~MWk~M~ec 188 (312)
T PF04782_consen 171 LVELIQG-------LMRMWKSMLEC 188 (312)
T ss_pred HHHHHHH-------HHHHHHHHHHH
Confidence 7777665 44555555554
No 114
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=80.35 E-value=26 Score=27.36 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
Q 032820 12 SSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYE---------------R 76 (133)
Q Consensus 12 ~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e---------------~ 76 (133)
.++-..|..++.+.+..|...++.... | .+.+++.....+....+..++-+|= .
T Consensus 130 ~K~K~~Y~~~~~~~e~ar~K~~~a~~~-----g------k~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~ 198 (234)
T cd07686 130 EKLKCSYRQLTKEVNSAKEKYKDAVAK-----G------KETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDF 198 (234)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhc-----c------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555543221 0 1234455555556666666665553 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 77 IKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 77 i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
..-.++.-++.|+..|+.-++.+|.+|++
T Consensus 199 ~lP~lLd~lQ~l~E~rv~~ln~i~~e~~~ 227 (234)
T cd07686 199 TLPLLLDSLQKMQEEMIKALKGILDEYSQ 227 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666554
No 115
>PRK14142 heat shock protein GrpE; Provisional
Probab=80.05 E-value=17 Score=28.25 Aligned_cols=55 Identities=5% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
.-...+..+|.++..+.-.++.+|+++.+++.+|.+....--...|-.-|+.-++
T Consensus 40 ~~~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlD 94 (223)
T PRK14142 40 ADAAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLD 94 (223)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHh
Confidence 5566788899999999999999999999999999999987666666555554443
No 116
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=77.91 E-value=29 Score=26.59 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIK---- 78 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~---- 78 (133)
.|..++.+|+.++..+.+.+..+...+.+.+++.... -|- ..--+.|...|.+....+..-.+.|..+.
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi---~~~----k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVI---EGY----KKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888999999999888888888888888887531 111 11222333444444444444444444443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 032820 79 ---ENNRTELERLDKERRADFLN--MLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 131 (133)
Q Consensus 79 ---~~~~~E~~RF~~ek~~d~k~--~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~ 131 (133)
+.+..||++....=..++.. +.+.-.++++..-+..++.=..=-.+|..|+|+
T Consensus 143 ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444332 222333444444444444444444555555553
No 117
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.80 E-value=29 Score=26.61 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI--------------KENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i--------------~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
..+++++..+......++.|+.+|... -..+-..++.|+.+|..=||+.|-.|+..-
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~i 223 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLG 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555666666666665566565555443 333455667777888888888888877643
No 118
>PRK11032 hypothetical protein; Provisional
Probab=77.64 E-value=26 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+...++.|++......+-.+.|++.+..-=.+||++....|.+.
T Consensus 26 l~~~ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~ 69 (160)
T PRK11032 26 IDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEES 69 (160)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33346666676667777777777777777777777777766554
No 119
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.13 E-value=7 Score=23.77 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
|+..++.++..++..+...+.+.+.+++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666555443
No 120
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=76.82 E-value=27 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 89 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~ 89 (133)
.+....+..+|.+.|..+..++..|+.........+..|=
T Consensus 117 ~~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP 156 (186)
T PF04011_consen 117 DENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFP 156 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999998888887774
No 121
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=76.20 E-value=33 Score=26.41 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 59 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 59 eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
++.+....++..+.-|-..-=.-.-=|.--+.-|.-|+-..|+.|...|..|++++.++-+.+.|-++.
T Consensus 144 e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~ 212 (213)
T cd07640 144 DMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEK 212 (213)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 556666666666666544333333344455677889999999999999999999999999999997653
No 122
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=75.22 E-value=57 Score=28.64 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
-+.+.+|..++.....++..++.++..-.+.++..+..++.-...|++..-..|.
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 4678888888888889999999999999999999999999999999998876554
No 123
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=74.46 E-value=39 Score=26.35 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIE-------ELKETIRVTEDAKSVAINEYERIKENNRTEL 85 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~-------~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~ 85 (133)
++...|...-..|.+-+....+.=... + +-..+.. ....++..++.++..+....+...+.-..=|
T Consensus 123 kaqk~~~~~~~~l~kaKk~Y~~~cke~------e-~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l 195 (258)
T cd07655 123 KAQKPWAKLLKKVEKAKKAYHAACKAE------K-SAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKAL 195 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666677777666665442100 0 0011111 1247788888999999888888777665555
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 86 ERLDKER---RADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 86 ~RF~~ek---~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
.-++..+ ..||..++..|=+.-...-.-+-+.|-.|..++..++|
T Consensus 196 ~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~~~~~ 243 (258)
T cd07655 196 EDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLDLSTN 243 (258)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5444433 45666666666666666666677777777777754443
No 124
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.58 E-value=43 Score=26.42 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 032820 8 FTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYER----------- 76 (133)
Q Consensus 8 ~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~----------- 76 (133)
+.+-.++...|..+..+.++.+....+..... ......+++++.....-.+.++.++.+|..
T Consensus 126 ~~~leksKk~Y~~acke~E~A~~k~~ka~~d~-------~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k 198 (252)
T cd07675 126 WKQMDNSKKKFERECREAEKAQQSYERLDNDT-------NATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHK 198 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 34444445555555555555554444433210 011344567777777777777777766543
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 77 ----IKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 112 (133)
Q Consensus 77 ----i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~ 112 (133)
-.-.+...++.|+..|..-|+.++..|+++--...-
T Consensus 199 ~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~ 238 (252)
T cd07675 199 HFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKVIP 238 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334466778889999999999999999988766554
No 125
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=73.52 E-value=41 Score=26.16 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNR--------------TELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~--------------~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+.-+++++..+......++.++.+|....+.+. .-++.++.+|..=||++|-.|+..
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~ 222 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCNH 222 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 355777778888888888888888876665332 234455666666677776666543
No 126
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.41 E-value=38 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.472 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032820 92 RRADFLNMLKGFVVNQVG 109 (133)
Q Consensus 92 k~~d~k~~l~~fa~~qi~ 109 (133)
|=.|=-.+|..|+.....
T Consensus 153 rwTDNI~~l~~~~~~k~~ 170 (188)
T PF03962_consen 153 RWTDNIFSLKSYLKKKFG 170 (188)
T ss_pred HHHhhHHHHHHHHHHhcC
Confidence 344555566666655433
No 127
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.94 E-value=47 Score=26.16 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 4 VRSAFTDRSSALLTVQTLLSELSSLQMRAEK-LEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 4 vk~a~~~R~~~~~~~q~a~~~L~~kr~~~~k-l~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
+..+...|...-...+++..+|...+...++ +....+++.++.+. +.-..--.++..++...+.+|+.+...++
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~-----e~~~~~~~dL~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTV-----EVDQFRSSDLSAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccce-----eecccccccchhhhhhHHHHHHHHHhhhh
Confidence 4455667777788888888888888776654 44433333222110 00001123477888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 83 TELERLDKERRADFLNMLKGFVVNQVG 109 (133)
Q Consensus 83 ~E~~RF~~ek~~d~k~~l~~fa~~qi~ 109 (133)
.|++-|-..+..++...........-.
T Consensus 187 ~e~e~~y~~k~~~l~~~~~~~~~~~~~ 213 (312)
T PF00038_consen 187 EELEEWYQSKLEELRQQSEKSSEELES 213 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccch
Confidence 999999999999998877664444433
No 128
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=68.68 E-value=52 Score=25.43 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 7 AFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGD-KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 85 (133)
Q Consensus 7 a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~-~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~ 85 (133)
++.|=-.....|+.+.-+...-+..+..+... .+++ .....+... .+..+..++..|+.....+..=|
T Consensus 128 aI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e----~~~~~~~~~~~~r~-------~q~~~~~~k~rf~kLr~Dv~~Kl 196 (229)
T PF06456_consen 128 AIPDTLLTIKKYEDARFEYDAYRLWLKEMSDE----LDPDTAKQEPKFRV-------AQGNYQEAKERFDKLRSDVLVKL 196 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSTSSTTCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchhhcccchHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666666666666666655411 1111 111344444 44455889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 86 ERLDKERRADFLNMLKGFVVNQVGYAEKIANV 117 (133)
Q Consensus 86 ~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~ 117 (133)
+-.+..|..+|..-|..|......|+..+.++
T Consensus 197 ~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 197 DLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999988888876553
No 129
>PRK14150 heat shock protein GrpE; Provisional
Probab=68.65 E-value=48 Score=24.99 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVT----EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 51 ~K~~~l~~eI~~~----e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
.++..|+.++.++ ..+.-.++.+|+++.+++.+|++....-=...|-.-|+.-+
T Consensus 41 ~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~ 98 (193)
T PRK14150 41 ARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVI 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566666666654 56777888889999998888888776665555544444433
No 130
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=68.32 E-value=64 Score=26.26 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 4 VRSAFTDRSSALLTVQTL-LSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 4 vk~a~~~R~~~~~~~q~a-~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
||.+|.+=..++..=+-+ ..+|++.+++.-.+.. .|+.|.+.|..-...+ -.=-+.=.-.++
T Consensus 187 ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~----------aRqkkAeeLkrltd~A-------~~MsE~Ql~ELR 249 (302)
T PF07139_consen 187 IKQTFAELQSCLMDREVALLAEMDKVKAEAMEILD----------ARQKKAEELKRLTDRA-------SQMSEEQLAELR 249 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH-------hhcCHHHHHHHH
Confidence 344555544444444433 4555555555444433 4566666665543322 222233344578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Q 032820 83 TELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANEN 132 (133)
Q Consensus 83 ~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~~ 132 (133)
.||..|-.+|..|=--.-..=.-.-++--...+.....|.+.=.+|+.|+
T Consensus 250 adIK~fvs~rk~de~lg~~~rf~~d~~~l~~~i~~~g~v~~~~~~ys~rs 299 (302)
T PF07139_consen 250 ADIKHFVSERKYDEELGRAARFTCDPEQLKKSIMSFGEVSHPKNSYSSRS 299 (302)
T ss_pred HHHHHHhhhhhhHHHHhHhhhcccCHHHHHHHHHhcCccccCcCCCCCCC
Confidence 88888988888763222222222233444556666666666666666664
No 131
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=67.52 E-value=33 Score=22.68 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 90 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ 90 (133)
..|+.++..+|..+...++.|+.+-++.++|+ ..++-|+.
T Consensus 37 ~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri-DN~~~~~~ 76 (85)
T PRK09973 37 NAKIARLEQDMKALRPQIYAAKSEANRANTRL-DAQDYFDC 76 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHH
Confidence 36777777777777777777777777777776 33555554
No 132
>PRK10325 heat shock protein GrpE; Provisional
Probab=67.11 E-value=53 Score=24.86 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTE----DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e----~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
..++..|+.++.+++ ...-.+..+|+++.+++.+|.+.....=...|-.-|+.-+
T Consensus 41 ~~~~~~l~~~~~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~ 99 (197)
T PRK10325 41 DEKIANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVI 99 (197)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456777777777763 5677889999999999999998877666555555444433
No 133
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=66.10 E-value=18 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.223 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
+=+.|++.||..+.++|++...++.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998888877543
No 134
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=65.80 E-value=61 Score=25.11 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
.+++++.....+...++..|+.+|-.....+......|- ...|=..+..+-.+.+..+..|..++.+...++|
T Consensus 161 ~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY-------~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~~~~ 233 (237)
T cd07657 161 RKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYR-------TLLLPGLLNSLQSLQEEFITQWKKILQEYLRYSD 233 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777777777777888888777665555544444442 2233333334444556666666666666555543
No 135
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=64.89 E-value=53 Score=27.10 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 67 KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120 (133)
Q Consensus 67 v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~ 120 (133)
-+.|+..|..+-+.+++-++-.++--+.|+..-|..|+..+.++++.+.+.-..
T Consensus 286 RQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~ 339 (429)
T KOG3651|consen 286 RQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKE 339 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999999999999999876543
No 136
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=64.63 E-value=64 Score=24.96 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 62 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 62 ~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
++...++..+.-|-..-=.-.-=|.-.+.-|.-|+-..|..|...|..|++++.++-+.+.|-+.
T Consensus 149 Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k 213 (215)
T cd07641 149 EIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIE 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555554433333334445778899999999999999999999999999999999765
No 137
>PRK15396 murein lipoprotein; Provisional
Probab=64.00 E-value=37 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
.|+.++..++..+...+..|+.+-.+.++|+-
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543
No 138
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=63.95 E-value=43 Score=22.74 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHH----HHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEE----LKETIRVTEDAK 67 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~----l~~eI~~~e~~v 67 (133)
.+|..-+.|.++.--++.++++|.... +|+.+ -+.+|++++..+
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk-----------~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLK-----------EKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 344444455566666666666666531 33333 566666666554
No 139
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.32 E-value=67 Score=24.42 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 129 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~ 129 (133)
++++..+..-.+.|..-++...+++...+ -.|--|++..+..+-.-.+-.+....-+.+...++.|..-...+.+++
T Consensus 102 e~~en~K~~~e~tEer~~el~kklnslkk--~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~ 178 (203)
T KOG3433|consen 102 ESIENRKAGREETEERTDELTKKLNSLKK--ILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYL 178 (203)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34444444444444444444444444444 234446666666666666666666667777778888887666665554
No 140
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=62.26 E-value=72 Score=24.75 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENN-------RTE-------LERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~-------~~E-------~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+.+.+++..+......++.+..+|......+ .+| ++..+.+|..=||++|-.|+..
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~ 223 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVNQ 223 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344455555555555555555554443333 222 3333777777777777777653
No 141
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.20 E-value=71 Score=24.68 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~ 111 (133)
+|+.+...++.......+.++..|+.=-..+-..++-++.+|..=|+++|..|...-.+.+
T Consensus 161 ~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~ 221 (233)
T cd07649 161 RKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLRHETD 221 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444445555555555555666778899999999999999988766554
No 142
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.31 E-value=59 Score=25.15 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..|-..+..|..++...++|.....+ +...+=+-.++.+|.+.+..++..+.+...+.+++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~k-----a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEK-----AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677788888888888888753211 11134455777777777777777777766666554
No 143
>PRK09039 hypothetical protein; Validated
Probab=60.06 E-value=95 Score=25.40 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
+..|+..|..++.+-..++..++.
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444344433333
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.87 E-value=42 Score=21.30 Aligned_cols=59 Identities=27% Similarity=0.337 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 89 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~ 89 (133)
.|+.|-+.+...+...+.|. ++-..|..+...+.......+.+...+..++..=+.+++
T Consensus 12 ki~~aveti~~Lq~e~eeLk--------------e~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELK--------------EKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555444 333444455555666666666666666666655555544
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.33 E-value=80 Score=24.30 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 120 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~ 120 (133)
..++..+...|......++..+...+.....+..--..+. +..+.......++..........-..|..
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS--ASQDLVESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666555555444444 33333344444444443333334444443
No 146
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.90 E-value=40 Score=26.08 Aligned_cols=26 Identities=12% Similarity=0.205 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
.+...|+.++++.....+.++...+.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDA 183 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 147
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=58.40 E-value=1e+02 Score=26.06 Aligned_cols=54 Identities=11% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKEN-------NRTEL-------ERLDKERRADFLNMLKGF 103 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~-------~~~E~-------~RF~~ek~~d~k~~l~~f 103 (133)
++.+.+|+..|+...+.|+..+..|+..... -++.| +-|+..|..=|+.||.+-
T Consensus 176 peq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v 243 (472)
T KOG2856|consen 176 PEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKV 243 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666543322 23333 467788888888887654
No 148
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.27 E-value=1.3e+02 Score=26.49 Aligned_cols=101 Identities=22% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 7 AFTDRSSALLTVQTLLSELSSLQMRAE----KLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 7 a~~~R~~~~~~~q~a~~~L~~kr~~~~----kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
..--|++.....|++..+|..+..... .+.... -.+++ .+.-..- =.++..++..-+.+|+.++...+
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~----~rd~t-~~~r~~F---~~eL~~Ai~eiRaqye~~~~~nR 266 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA----RRDTT-ADNREYF---KNELALAIREIRAQYEAISRQNR 266 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH----hhccc-ccchHHH---HHHHHHHHHHHHHHHHHHHHHhH
Confidence 344577788888888888888773332 222110 00110 0111111 13567788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 83 TELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 83 ~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
+|++-|=..|...++..-.-+...+-.+-+.+.
T Consensus 267 ~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~ 299 (546)
T KOG0977|consen 267 KDIESWYKRKIQEIRTSAERANVEQNYAREELR 299 (546)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence 999999999999999655555555544444443
No 149
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.79 E-value=1.8e+02 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
..+..++.+|..+...+..++.+++.+......+....
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566655555555555444
No 150
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=57.22 E-value=42 Score=23.96 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 118 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~W 118 (133)
..++..++.+|..++..++..+..|......+.+=..|.+.++..-....+..|+...+..+..+-.+.
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~ 78 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERAL 78 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888877777775554444444444444444444555666666555554444333
No 151
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.50 E-value=56 Score=28.24 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~ 71 (133)
+.||+.++.++..++.+++.+.
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5677777777777777665433
No 152
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=55.25 E-value=1.1e+02 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 10 DRSSALLTVQTLLSELSSLQMRAEKLEA 37 (133)
Q Consensus 10 ~R~~~~~~~q~a~~~L~~kr~~~~kl~~ 37 (133)
.|+..++....++.+|..-++.++.|..
T Consensus 85 q~~q~y~q~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 85 QRVQFYQQESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888899888888887763
No 153
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=53.31 E-value=80 Score=22.45 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 110 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~ 110 (133)
.|+..++.++.+.+..+ ..+.+.+.+....++..++ .+...|...|..|++.+..-
T Consensus 10 ~ki~~l~~~~~~i~~~~---~~~I~~i~~~~~~~~~~l~-~~i~~l~~~l~~y~e~~r~e 65 (149)
T PF07352_consen 10 RKIAELQREIARIEAEA---NDEIARIKEWYEAEIAPLQ-NRIEYLEGLLQAYAEANRDE 65 (149)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCHHh
Confidence 56666666666665543 4555566666666666653 34455666677777665543
No 154
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=53.23 E-value=1.5e+02 Score=25.70 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTV---QTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~---q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
|++|+..+..|+.++-.. ++.++.|.-.++....-... -+.-. --=-.|+..++.++...-....-|...|..+
T Consensus 188 lqe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~--~i~~~-~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~ 264 (554)
T KOG4677|consen 188 LQEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDEN--VITAV-LIFLKRTLSKEIEFRNELEVRQLALRHLIHF 264 (554)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999888777 44444443333222111100 00000 0013778888888887777778888888777
Q ss_pred HHHHH
Q 032820 78 KENNR 82 (133)
Q Consensus 78 ~~~~~ 82 (133)
.+++-
T Consensus 265 kKe~d 269 (554)
T KOG4677|consen 265 KKEID 269 (554)
T ss_pred HHHHH
Confidence 66553
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.94 E-value=1.2e+02 Score=24.28 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 89 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~ 89 (133)
..|+..++.+|.+.+..+...+.+.+...+++.+.=+-|.
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666777777777777777777777777766666554
No 156
>PRK12704 phosphodiesterase; Provisional
Probab=52.34 E-value=1.6e+02 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 110 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~ 110 (133)
...+...+.++...+..++.-+.+++........++++--.--..+-|..|..-++.+...
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~ 169 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666677777766766666655545555555555555554443
No 157
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.28 E-value=52 Score=20.04 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRT 83 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~ 83 (133)
..|+.+|..+|..+...+..|+.+-...++++-.
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888888888888888777643
No 158
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=51.46 E-value=69 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 74 YERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 74 ~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+.........|++.|..++...|+.....+...
T Consensus 31 lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~ 63 (105)
T PF03179_consen 31 LKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGE 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444455556666666666666555555433
No 159
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.05 E-value=1.8e+02 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER------RADFLNMLKGFVVNQVGYAEKIANVWA 119 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek------~~d~k~~l~~fa~~qi~~~~~~~~~We 119 (133)
++++..++.--..++.+.+.|...-|.....+..=+.+|+..+ ..||+.-| .|+-.+..+-+..+++=.
T Consensus 608 ~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 608 REERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGNAIETVT 682 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 3555566666666777777777777777777777778887654 57999988 888888888777766544
No 160
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.80 E-value=1.9e+02 Score=25.90 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRAD 95 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d 95 (133)
.++..++.+....++.+..|+...+...+..| ..-+.....+|.+++..+..+.+....+.+.. ..|..+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p--~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf--------~~ks~e 635 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVP--TSSLESQEKEIAELKAELASAEKRNQRLKEVF--------KAKSQE 635 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCccccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 44445555555555555555432211111111 12233445566677777777776666666665 667778
Q ss_pred HHHHHHHHHHH
Q 032820 96 FLNMLKGFVVN 106 (133)
Q Consensus 96 ~k~~l~~fa~~ 106 (133)
|+.++-.+..-
T Consensus 636 Fr~av~~llGy 646 (722)
T PF05557_consen 636 FREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHHhcc
Confidence 88777665543
No 161
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=49.63 E-value=79 Score=21.32 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 67 KSVAINEYERIKENNRTELERLDKERRADFLNML 100 (133)
Q Consensus 67 v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l 100 (133)
+..++.+.+.+......++++-...=..+++..+
T Consensus 86 ~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~ 119 (132)
T PF00430_consen 86 LAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEI 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333333333
No 162
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.03 E-value=1.1e+02 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.++..|+.++..++.....-+.+|..+..-|
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777665544
No 163
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=48.59 E-value=74 Score=26.55 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Q 032820 55 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF-------------------------LNMLKGFVVNQVG 109 (133)
Q Consensus 55 ~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~-------------------------k~~l~~fa~~qi~ 109 (133)
.+=+.-.+|+++++.|.+-...-.+.+.-||..|-+|-.... -+|+..=+..+..
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g 228 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG 228 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence 334455789999999997777777778888888877643221 1355666777778
Q ss_pred HHHHHHHHHHHHHHH
Q 032820 110 YAEKIANVWAKVAEE 124 (133)
Q Consensus 110 ~~~~~~~~We~~~~~ 124 (133)
.|++.++.|+.+.+.
T Consensus 229 ~y~~AV~~~e~v~eQ 243 (389)
T COG2956 229 DYQKAVEALERVLEQ 243 (389)
T ss_pred chHHHHHHHHHHHHh
Confidence 889999999998764
No 164
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.59 E-value=61 Score=19.74 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIK 78 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~ 78 (133)
.|+.+|..+|..+..+|++...+...+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666555443
No 165
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=48.13 E-value=1.3e+02 Score=23.57 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
..+..+++.|.....++..+.... ......+..++..+..++.....++.+|+....
T Consensus 80 ~~l~~a~a~l~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~ 136 (334)
T TIGR00998 80 LALAKAEANLAALVRQTKQLEITV-------QQLQAKVESLKIKLEQAREKLLQAELDLRRRVP 136 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445666777777776666665421 011334445555555555555555556555543
No 166
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=48.07 E-value=93 Score=21.70 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
.+++.....++.+|+++.++..+|.+.-...-...|-.-|+..++..
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~l 48 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNL 48 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999888777777666666655544
No 167
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=46.96 E-value=70 Score=26.17 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHhc
Q 032820 53 IEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVG---YAEKIANVWAKV--AEETSG 127 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~---~~~~~~~~We~~--~~~~~~ 127 (133)
+..|+..+..+.+.+...++..+++....--+-+-=..++..-++..|..|++.... .|.+-+..|.+. .|.+.+
T Consensus 170 ~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~pd~~~~e~~~~Lr~~L~tflq~~~~F~~~Y~~EIrpWch~~~~P~L~g 249 (325)
T PF06694_consen 170 VSELEKKASELSKQLQSLQQQVAELASKHPYNPDEEYVEKESQLRLELETFLQTAAGFNHCYEKEIRPWCHMMEVPQLHG 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCccchhhc
Confidence 344444555554444444444444433332222222234555577777777776654 578899999998 555544
Q ss_pred h
Q 032820 128 Y 128 (133)
Q Consensus 128 ~ 128 (133)
.
T Consensus 250 L 250 (325)
T PF06694_consen 250 L 250 (325)
T ss_pred c
Confidence 4
No 168
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=46.77 E-value=1.2e+02 Score=22.81 Aligned_cols=68 Identities=7% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 131 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~ 131 (133)
-..|..-+.+|+.+.....++.--=++.|-.-|-+.+..|+...+.++-+....-...+|..+..+.+
T Consensus 147 ~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~~~~ 214 (219)
T PF08397_consen 147 LQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQELCSD 214 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 45666677788888888888777777777777888888888888888888777777777777666443
No 169
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=46.07 E-value=62 Score=23.66 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSV 69 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~ 69 (133)
+...++..|.+++..+..
T Consensus 65 ~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 65 QMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 444444455555544443
No 170
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=44.49 E-value=99 Score=21.01 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLE 36 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~ 36 (133)
++|.+||+-.++.+..++++..|.
T Consensus 2 ksL~hWq~w~aEYe~LKEEi~~l~ 25 (99)
T PF13758_consen 2 KSLYHWQTWEAEYEGLKEEIEALP 25 (99)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999884
No 171
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=43.79 E-value=89 Score=20.24 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..|+.+|+.++......+..|+.+-...+.++
T Consensus 38 nAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 38 NAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 35555566666666666666665555544443
No 172
>PRK14143 heat shock protein GrpE; Provisional
Probab=43.40 E-value=1.6e+02 Score=23.04 Aligned_cols=47 Identities=6% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 100 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l 100 (133)
...+..|+.+|..++..+...+..| -++.-|++.|.+--.+|...+.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~----lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQY----MRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777666 4566677777666656554443
No 173
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=43.32 E-value=1.7e+02 Score=23.38 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..+..++++|...+++++.+...- ..+...+..++.+|..++..++.|+.+|+....-.
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~~~~~-------~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~ 144 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTTQRSV-------DAERSNAASANEQVERARANAKLATRTLERLEPLL 144 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555443210 01234455566667777777777777766655443
No 174
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.51 E-value=3.4e+02 Score=26.33 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 20 TLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNM 99 (133)
Q Consensus 20 ~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~ 99 (133)
....+++..+.++++.++ .++..++..+++.+.-+++....+++ -....+..+.+|+++|..|
T Consensus 368 ElReEve~lr~qL~~ae~-------------~~~~el~e~l~esekli~ei~~twEE----kl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 368 ELREEVEKLREQLEQAEA-------------MKLPELKEKLEESEKLIKEITVTWEE----KLRKTEEINQERQAQLESM 430 (1714)
T ss_pred HHHHHHHHHHHHHhhhhh-------------ccchHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344455555555554333 56667777777777777777766654 3456788889999999999
Q ss_pred HHHHHHHHH
Q 032820 100 LKGFVVNQV 108 (133)
Q Consensus 100 l~~fa~~qi 108 (133)
-+.|...-|
T Consensus 431 gis~~~sgi 439 (1714)
T KOG0241|consen 431 GISLENSGI 439 (1714)
T ss_pred HHHHhcccc
Confidence 888765433
No 175
>PRK09039 hypothetical protein; Validated
Probab=41.39 E-value=2e+02 Score=23.55 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
...+..|..+|..++.++...+..++......
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444433
No 176
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=40.84 E-value=1.8e+02 Score=23.01 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.+..++.++..++..++.++..|+..
T Consensus 108 ~i~~~~~~l~~ak~~l~~a~~~~~r~ 133 (331)
T PRK03598 108 EIAQARAAVKQAQAAYDYAQNFYNRQ 133 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 177
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=39.95 E-value=85 Score=18.92 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 6 SAFTDRSSALLTVQTLLSELSSLQMRAEKLE 36 (133)
Q Consensus 6 ~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~ 36 (133)
.+...+...+-++......|+..+.++.||+
T Consensus 21 ~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 21 ALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444443
No 178
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.25 E-value=1.1e+02 Score=20.14 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
-..+..+..+|..++..+.....++..+
T Consensus 73 ~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666554
No 179
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=39.15 E-value=1.8e+02 Score=22.37 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSVAINEYE-RIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~a~~~~e-~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
|+..++.+...--+.....+.++. ..--.+..++.++..+...-|..-+..|+-
T Consensus 173 K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~~~~~~~~ 227 (234)
T cd07652 173 KVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRLQYQKYAL 227 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 444444444433334444444432 345566667777777777777666666654
No 180
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.02 E-value=2.6e+02 Score=24.28 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVG 109 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~ 109 (133)
...+...+.++...+..++.-..+++........++++--.--..+-|.+|..-++....
T Consensus 103 e~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~ 162 (514)
T TIGR03319 103 EENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEAR 162 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666665666555444444555555555544443
No 181
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.88 E-value=2.1e+02 Score=23.18 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..++..++.++.++...++.....-..+...+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655555555555544443
No 182
>PRK14160 heat shock protein GrpE; Provisional
Probab=38.09 E-value=1.8e+02 Score=22.29 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRA 94 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~ 94 (133)
..++..++.++..++..+...+.+.+.+.+..++-..-|+--|.+
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777777665555444444433
No 183
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=37.96 E-value=1.1e+02 Score=19.82 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 22 LSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 22 ~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
++.|++.+.++++.... +......+..|..+|...-..-......-..+.+++..=++||+..
T Consensus 3 ~~~L~~L~~eL~~~~~l-------d~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~ 65 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPL-------DEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEAS 65 (85)
T ss_pred HHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHh
Confidence 45677777777655432 2223456666666665443331123445677888888888888764
No 184
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=37.72 E-value=99 Score=19.06 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRA 32 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~ 32 (133)
++-++++|.+|+..-..+--++.+|+.-+...
T Consensus 2 l~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 2 LQELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35689999999999999999999999877543
No 185
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.48 E-value=1.5e+02 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
.++.+-+....++|++++..+.+.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 186
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=37.05 E-value=2.1e+02 Score=22.53 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQV 108 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi 108 (133)
.+.-.++.++.++..++..+-.+++++-++..+.++.+..-...-|-.-|..-++.+=
T Consensus 77 ~~~~k~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le 134 (236)
T KOG3003|consen 77 EKVLKLEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLE 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677778888888888888888888888888887777777666666555543
No 187
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=36.83 E-value=1.2e+02 Score=19.60 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
+.+........++..++.++..+.. .++....++..+-.+|.++...+.....+
T Consensus 56 ~~~~~~~~~r~~~~~~r~~l~~ll~-------~~~~D~~~i~a~~~~~~~~~~~l~~~~~~ 109 (125)
T PF13801_consen 56 EFRQEMRALRQELRAARQELRALLA-------APPPDEAAIEALLEEIREAQAELRQERLE 109 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CSSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666655543 33445688999999988887777665544
No 188
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=36.39 E-value=2.4e+02 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
...++.+..+...++..++.|+..++..
T Consensus 140 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a 167 (397)
T PRK15030 140 KQEYDQALADAQQANAAVTAAKAAVETA 167 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666677777666554
No 189
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=36.38 E-value=1.4e+02 Score=20.50 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
=+|+.+++.+|..+....+..+...+.|++++.
T Consensus 44 f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~ 76 (106)
T PF12443_consen 44 FDKIREGEQMIQKLGEQTEELKDKVQEFSKRIE 76 (106)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 478888899999999999999988888887764
No 190
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.22 E-value=1e+02 Score=26.56 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
.-||++|..+|..|| .-||.+|+.+.
T Consensus 462 ~aem~hf~~~~~~~~--------~qqi~Fyq~v~ 487 (490)
T KOG2528|consen 462 KAEMQHFLQEREYDF--------SQQIIFYQKVA 487 (490)
T ss_pred HHHHHHHHhhccccH--------HHHHHHHHHHh
Confidence 889999999999999 66778887664
No 191
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=36.14 E-value=2.2e+02 Score=22.56 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 11 RSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEY 74 (133)
Q Consensus 11 R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~ 74 (133)
...+...++.+...|...+..+.+.+.. +..+..-...++..+.++..++..++.++..+
T Consensus 109 i~~~~~~l~~ak~~l~~a~~~~~r~~~L----~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~ 168 (331)
T PRK03598 109 IAQARAAVKQAQAAYDYAQNFYNRQQGL----WKSRTISANDLENARSSRDQAQATLKSAQDKL 168 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777666665532 21111113455555555555555555555544
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.70 E-value=3.3e+02 Score=24.42 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 56 LKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 56 l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
.+.++..++..++.+++-|+.+..
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 193
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.62 E-value=1e+02 Score=18.66 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELE 86 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~ 86 (133)
.++..++..|..++...+..+...+.+.++++.=+.
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777777777744333
No 194
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=35.55 E-value=2e+02 Score=22.32 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNM 99 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~ 99 (133)
+.+|..+|.+|-.-=..|..+.+-.+.||.-|...|..+++..
T Consensus 85 qa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~ 127 (219)
T PF06730_consen 85 QAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQL 127 (219)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999999999888753
No 195
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.19 E-value=2.1e+02 Score=22.01 Aligned_cols=69 Identities=25% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAI---NEYERIKENNRTELERLDK-----------ERRADFLNMLKGFVVNQVGYAEKIANVW 118 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~---~~~e~i~~~~~~E~~RF~~-----------ek~~d~k~~l~~fa~~qi~~~~~~~~~W 118 (133)
+...+.+|.+++..++... .++.-+-..+..+++.|=. .|...++.++.+. .+...++.-.+|
T Consensus 79 v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~---dv~~~ek~r~vl 155 (251)
T PF11932_consen 79 VASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDA---DVSLAEKFRRVL 155 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcc---CCCHHHHHHHHH
Confidence 3344444444444433333 3333334455555555422 3455555555444 334444444555
Q ss_pred HHHHHH
Q 032820 119 AKVAEE 124 (133)
Q Consensus 119 e~~~~~ 124 (133)
+.|.-+
T Consensus 156 ea~~~E 161 (251)
T PF11932_consen 156 EAYQIE 161 (251)
T ss_pred HHHHHH
Confidence 554443
No 196
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=35.11 E-value=2.2e+02 Score=22.39 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 18 VQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 18 ~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
-+...+.+.......+++.. .+..++++-..+|++.+.+.+.+++. -+|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~e~~~~~~e~~~kaeeaqK~-Gi~~kIf 62 (306)
T PF04888_consen 10 SKSSEESLKSKKEQIERASE----------AQEKKAEEKAEEIEEAQEKAEEAQKA-GIFSKIF 62 (306)
T ss_pred HHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHH
Confidence 34556666777777777665 23578888888888888888888887 6665543
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.96 E-value=2.8e+02 Score=23.36 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
-.++...+.++..++..++.++..|+.+.++.
T Consensus 347 ~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 347 LRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777778888888888887777654
No 198
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.94 E-value=1.9e+02 Score=25.09 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 20 TLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 20 ~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
+|+-.|...++..+||..-.+.+||.-..-.. ..+.+...++-.|+..+..+....++=+.||+..
T Consensus 358 naekql~~Ake~~eklkKKrssv~gtl~vahg------sslDdVD~kIleak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 358 NAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHG------SSLDDVDHKILEAKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchheeeeeccc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554444556665210000 1144455555667778888999999999999764
No 199
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.87 E-value=64 Score=18.83 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKS 68 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~ 68 (133)
..|++.+..+|.+++.+-+
T Consensus 18 Eqkiedid~qIaeLe~KR~ 36 (46)
T PF08946_consen 18 EQKIEDIDEQIAELEAKRQ 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 5899999999999987643
No 200
>PLN02939 transferase, transferring glycosyl groups
Probab=34.20 E-value=4.2e+02 Score=25.24 Aligned_cols=11 Identities=9% Similarity=0.462 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 032820 116 NVWAKVAEETS 126 (133)
Q Consensus 116 ~~We~~~~~~~ 126 (133)
+.|..++-.+.
T Consensus 414 ~~~~~lll~id 424 (977)
T PLN02939 414 EFWSRILLLID 424 (977)
T ss_pred HHHHHHHHHHH
Confidence 45655554443
No 201
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.08 E-value=4.3e+02 Score=25.38 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
.++...++..+..++..+...+.+.+.+......++.-...++..........
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~ 729 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAE 729 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666766666666666666666666655554444444333
No 202
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.57 E-value=1.5e+02 Score=19.86 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+|+..++..+..++......+.+++.+...+
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666554
No 203
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.36 E-value=1.5e+02 Score=19.95 Aligned_cols=19 Identities=0% Similarity=0.108 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSVA 70 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~a 70 (133)
+...++.++.+++...+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 204
>PRK14155 heat shock protein GrpE; Provisional
Probab=33.21 E-value=2.2e+02 Score=21.76 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~ 111 (133)
.-.+.+..+|..++..+...+..|-.....+-+=-.|.++++..-.+..+.+|+...+...
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~ 73 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAA 73 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3346777777777777776666664333333333334444444444455555555544433
No 205
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.16 E-value=1e+02 Score=17.98 Aligned_cols=27 Identities=11% Similarity=0.259 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
++.|.+.+..++.++...+..|....+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777666666655444
No 206
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.93 E-value=2.6e+02 Score=22.56 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELE-----R 87 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~-----R 87 (133)
..+...+.-..++........+|....+++.-.-.+-..--.+|+..+.+........+..++.+.+.+...=. -
T Consensus 37 ~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~ 116 (297)
T KOG0810|consen 37 EFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSA 116 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 45566666666777777666666654444332222223445677777777777777777777777665533221 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 88 LDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 88 F~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
-.+.|...+......|.+.+-.|.+--.++|+.+...+
T Consensus 117 ~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i 154 (297)
T KOG0810|consen 117 GLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERI 154 (297)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234444444555566666666666666666655544
No 207
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.74 E-value=3e+02 Score=23.16 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
..++..|..|+..||..+-.+-.-|+-.-..|--=+--+|..|......|+++...+.+.+.+-+.++
T Consensus 188 RkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~~~y 255 (436)
T KOG3891|consen 188 RKAQTQVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHEACIGY 255 (436)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566778899999999999999999888888888888999999999999999998888888766554
No 208
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=32.70 E-value=2.3e+02 Score=21.83 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 92 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek 92 (133)
+....|....++|.+.....-|++.-+-+. |.+. .+.++.. .-..|..-+.+++.+...-.++.-.=++.|
T Consensus 116 ~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~-~~~k-~~~~l~~-------~~e~v~~k~~ele~~~~~~lr~al~EERrR 186 (223)
T cd07605 116 DYKKEYKQKREDLDKARSELKKLQKKSQKS-GTGK-YQEKLDQ-------ALEELNDKQKELEAFVSQGLRDALLEERRR 186 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCc-ccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666667777776666665422111 1111 1233333 345566667788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 93 RADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 93 ~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
-.=|-+.+-.++...+.|+......-...+|..+
T Consensus 187 yc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 187 YCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 8999999999999999988877777666666544
No 209
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.23 E-value=2.2e+02 Score=21.51 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD----KERRADFLNMLKGFVVNQVGYA 111 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~----~ek~~d~k~~l~~fa~~qi~~~ 111 (133)
.....+..++.++.+++..+...+..|- +..-|++.|. +++..--+..+.+|+...+...
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~l----R~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~ 100 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYL----RERADLENYRKRVQKEKEELLKYGNESLILEILPAV 100 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3467788888888888888887777764 4555555554 4444444444555555444433
No 210
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.05 E-value=4e+02 Score=24.30 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKEN-------NRTELERLDK------ERRADFLNMLKGFVVN 106 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~-------~~~E~~RF~~------ek~~d~k~~l~~fa~~ 106 (133)
-.++..++.++..+....+...+.|+.+.++ +..=+.+.+. .=.++|+.-|..+-..
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 3556666666666655555555555555444 4333333322 1135666666665553
No 211
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=31.88 E-value=2.3e+02 Score=21.49 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERR----ADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~----~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
.+++.+..++..+...++.....-..-|.-++.... .||-.+|..|=.+.......+.++|..+....
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~ 232 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIE 232 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888888888888877643 48888888887777777777777777666544
No 212
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.80 E-value=2.8e+02 Score=22.49 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKE---NNRTELERLD 89 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~---~~~~E~~RF~ 89 (133)
++|+..+..+..|++.+.... .|+=.++.|+..+.....+++..+.++..+.. .+.+..++.+
T Consensus 15 ~aLqKIqelE~QldkLkKE~q--------------QrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQ--------------QRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 567777777777766554432 24566777788888888888888888776654 3455556666
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 90 KERRA-----DFLNMLKGFVVNQVGYAEKIANVWAK 120 (133)
Q Consensus 90 ~ek~~-----d~k~~l~~fa~~qi~~~~~~~~~We~ 120 (133)
+.|.. -.|..-.+|+++|+..+++.++.-+.
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 35788899999999999887765544
No 213
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.80 E-value=4.1e+02 Score=24.36 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032820 75 ERIKENNR 82 (133)
Q Consensus 75 e~i~~~~~ 82 (133)
..+.+.++
T Consensus 571 ~~~~~~a~ 578 (771)
T TIGR01069 571 QEALKALK 578 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 214
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=31.01 E-value=2.5e+02 Score=21.73 Aligned_cols=107 Identities=14% Similarity=0.246 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 8 FTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGG--DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 85 (133)
Q Consensus 8 ~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~--~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~ 85 (133)
+-|=--+...|..|.=+..+-+..++.|.... ...|. ++ .-+|+..+-+-.-.-.--..++..|+.+-..+..=+
T Consensus 98 ipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee-~~~~~~~e~--l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKl 174 (215)
T cd07659 98 IPDTKLTIKKYADVKFEYLSYCLKVKEMDDEE-YSYAALDEP--LYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKL 174 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccCc--HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566666666666666666663210 00111 12 456666666555555556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 86 ERLDKERRADFLNMLKGFVVNQVGYAEKIANV 117 (133)
Q Consensus 86 ~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~ 117 (133)
+-.+..++.||..-|.-|......|+..+.+.
T Consensus 175 elLe~k~vk~i~~QL~~f~~aisay~~~~~~~ 206 (215)
T cd07659 175 ELLDQKHVQDIVFQLQRFVSALSEYHSDCHEL 206 (215)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877655
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.92 E-value=2e+02 Score=20.61 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
.+......+...++++..|.... ....-...+..|+.+|..++.+++..+.....++.
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ 144 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSP 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 34445555555555665555431 11123688888999999999988888876555444
No 216
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.76 E-value=2.1e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++|+++++.|++.+.......+..++.....
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777766666666666666554433
No 217
>PHA01816 hypothetical protein
Probab=30.66 E-value=1.6e+02 Score=20.89 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 032820 81 NRTELERLDKERRA----DFLNMLKGFVVN-----QVGYAEKIANVWAKVA 122 (133)
Q Consensus 81 ~~~E~~RF~~ek~~----d~k~~l~~fa~~-----qi~~~~~~~~~We~~~ 122 (133)
...|++||.++|.+ +=+.-+.+|... -..+++.-+++|.+|.
T Consensus 4 htsemdrwkkerearke~e~~~~~ndfs~infkfddkdlqeayid~wkhf~ 54 (160)
T PHA01816 4 HTSEMDRWKKEREARKEQEKDLFLNDFSNVNFKFDDKDLQEAYIDTWKHFA 54 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccCccccChhHHHHHHHHHHHHhh
Confidence 45788999888754 333344444433 3456788899999985
No 218
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.43 E-value=1.3e+02 Score=18.37 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
.++|..|+.||..++..+...+....
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888887776655443
No 219
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.87 E-value=2.9e+02 Score=22.14 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 112 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~ 112 (133)
++-..|+.+|+.+|.+-+..++++..--.=...++. -|+.-||+-|..=+.......+
T Consensus 11 qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA----~RVqGFkdYLvGsLQDLa~saE 68 (283)
T PF11285_consen 11 QRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLA----IRVQGFKDYLVGSLQDLAQSAE 68 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHH----HHHhhhHHHHHHHHHHHHHHHH
Confidence 555666777777777777766665432222233332 3555555555555444444444
No 220
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.86 E-value=2.2e+02 Score=20.60 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAINEY 74 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~ 74 (133)
++.|+.+|.+|+.....+..+|
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 221
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.77 E-value=2.3e+02 Score=20.79 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
++...++.+|.+++..++.++.+++.+.+..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666554433
No 222
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=29.55 E-value=2.7e+02 Score=21.65 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=23.4
Q ss_pred HHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 86 ERLDKERR---ADFLNMLKG---FVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 86 ~RF~~ek~---~d~k~~l~~---fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
..|+..+. .+|.+.|-+ |+.....+.+..+++-+.-...++..
T Consensus 172 ~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l 220 (244)
T cd07595 172 LKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAV 220 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554443 444444433 55566666666666666666655543
No 223
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=29.53 E-value=3.1e+02 Score=22.26 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 5 RSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 84 (133)
Q Consensus 5 k~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E 84 (133)
..++.|---...+|++|.-+.+.-|.-++.+... + .+.. ...-+..++...++-+..|+.+...+.--
T Consensus 216 nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~-P----~~~~-------t~~~le~aq~~~q~hkekYeKlrnDvaiK 283 (341)
T KOG3876|consen 216 NKTIEDTLMTIKQYESARIEYDAYRTDLEELTLG-P----RDAL-------TKNLLEGAQEKFQAHKEKYEKLRNDVAIK 283 (341)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCC-c----cccc-------cccccHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3455565666777888888888888888776531 1 1111 01234456667788888999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 85 LERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 85 ~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
+.-.+..|..-|..-|.-|=..-..||---...-+.-+.+
T Consensus 284 mkfLeENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkq 323 (341)
T KOG3876|consen 284 MKFLEENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQ 323 (341)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999998888877766666665444444444433
No 224
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.43 E-value=4.2e+02 Score=23.84 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch------hc-c--cCC---------Cc----cHHHHHHHHHHHHHHH
Q 032820 6 SAFTDRSSALLTVQTLLSELSSLQMRAEKLEAAS------SK-I--FGG---------DK----SRIRKIEELKETIRVT 63 (133)
Q Consensus 6 ~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~------sr-~--~g~---------~~----~r~~K~~~l~~eI~~~ 63 (133)
.+|.+-....+.+...+.+++.-|..++++.-+- .+ . .|- .+ ....||-.|+.++..+
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~ 119 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQL 119 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888774321 00 0 111 11 2357999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTE 84 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E 84 (133)
..-+..-+.+.+.+...+...
T Consensus 120 r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988887766543
No 225
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.10 E-value=84 Score=15.64 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~ 71 (133)
+..+...|.++|..+..+.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455566666666665543
No 226
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.08 E-value=1.8e+02 Score=19.29 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.++=+..|+..+..++..+......++.+.+.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKL 93 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444433
No 227
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=29.04 E-value=3.2e+02 Score=25.20 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 129 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~ 129 (133)
..+.+.+..+..++..|....=.-..=+---+--|..+|-+.++.|+..|+.|++++-+.=..+-|-+..++
T Consensus 153 ~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~ 224 (785)
T KOG0521|consen 153 KVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVA 224 (785)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHH
Confidence 344445556666666665544433334444556788899999999999999999998555555555555543
No 228
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.12 E-value=1.5e+02 Score=18.27 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.|..-+..++..|.+++.-+..-.-+...+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777777777766666655555444
No 229
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.08 E-value=2.2e+02 Score=20.03 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALL 16 (133)
Q Consensus 2 ~avk~a~~~R~~~~~ 16 (133)
+.|..+|.+|.....
T Consensus 30 kPi~~~l~~R~~~I~ 44 (141)
T PRK08476 30 KPLLKFMDNRNASIK 44 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788888876543
No 230
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=27.98 E-value=4.6e+02 Score=23.77 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINE-----YERI 77 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~-----~e~i 77 (133)
++..+...|......|..++.++...|.++..-+..- +|.+ =..++...++.++.-+...+.. ....
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~--vFr~------l~~q~~~m~esver~~~kl~~~~~~~~~~~~ 307 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI--VFRN------LGRQAQKMCESVERSLSKLQEAIDSGIHLDN 307 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH------HHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 4556667777777888888888888877776555421 2211 1122223333333333222222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhch
Q 032820 78 KENNRTELERLDKERRADFLNMLKGFVVNQVG------YAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 78 ~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~------~~~~~~~~We~~~~~~~~~ 128 (133)
...+..+|+.+..-+..-|..|..++...-|. +...+..-|..+.+.+..+
T Consensus 308 ~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv~~r~n~~L~~rW~~L~~~~d~~ 364 (683)
T PF08580_consen 308 PSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKGVADRLNADLAQRWLELKEDMDSL 364 (683)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHh
Confidence 56688999999999999999886666554332 3347889999998776555
No 231
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.97 E-value=3.5e+02 Score=22.41 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=60.5
Q ss_pred ChhHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcccCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTD--RSSALLTVQTL-LSELSSLQMRAEKLEAASSKIFGGD--KSRIRKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 1 ~~avk~a~~~--R~~~~~~~q~a-~~~L~~kr~~~~kl~~~~sr~~g~~--~~r~~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
|+-||+.|.+ +...+-.+++. ..+|........||++-. ...| ..+..|+. +.+|..+..+.+..+..++
T Consensus 119 i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRR---ldyD~kkkk~~K~~--dEelrqA~eKfEESkE~aE 193 (366)
T KOG1118|consen 119 IGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRR---LDYDYKKKKQGKIK--DEELRQALEKFEESKELAE 193 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhh---hHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHH
Confidence 3556666665 44456666666 556666666677777521 1111 12333433 3344444444443333332
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 76 R-IKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 76 ~-i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
. +-...-.|+++. +-|..+++.|+.|+++..+.-..+...+
T Consensus 194 ~sM~nlle~d~eqv---------sqL~~Li~aqLdfhrqs~~iL~~l~~~l 235 (366)
T KOG1118|consen 194 DSMFNLLENDVEQV---------SQLSALIQAQLDFHRQSTQILQELQMKL 235 (366)
T ss_pred HHHHHHHhcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111122234433 4578899999999999998887776654
No 232
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.87 E-value=3e+02 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 99 MLKGFVVNQVGYAEKIANVWAKVA 122 (133)
Q Consensus 99 ~l~~fa~~qi~~~~~~~~~We~~~ 122 (133)
...+|=..-++|.+..+.+-+.++
T Consensus 211 k~~D~k~~~~~yae~~i~~~~~~~ 234 (243)
T cd07666 211 MQTDLRSAFTDMAENNISYYEECL 234 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544443
No 233
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.85 E-value=1.8e+02 Score=19.04 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGGD--KSRIRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~--~~r~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
..++....++.+.+...+.|...-..+.|.+ .-..+-+..|+..+..+-..|-.-+.+
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~ 71 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQ 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3566777888888888888876545555653 122466666666666665555555544
No 234
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.75 E-value=4.4e+02 Score=23.49 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=50.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 45 GDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR------TELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 118 (133)
Q Consensus 45 ~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~------~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~W 118 (133)
..+..+.+++.+..+|.+-|...+..+.+-+....-+. .||+|-+.+|..+.+.+. ..+.+.-.-.-.+|
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~----~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN----KIQSELDRLSKEVW 363 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34456789999999999999999999998888877664 588888888887766543 33333333344455
Q ss_pred H
Q 032820 119 A 119 (133)
Q Consensus 119 e 119 (133)
+
T Consensus 364 ~ 364 (581)
T KOG0995|consen 364 E 364 (581)
T ss_pred h
Confidence 4
No 235
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=27.36 E-value=2.9e+02 Score=21.30 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCC--cc------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 032820 8 FTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGD--KS------RIRKIEELKETIRVTEDAKSVAINE-YERIK 78 (133)
Q Consensus 8 ~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~--~~------r~~K~~~l~~eI~~~e~~v~~a~~~-~e~i~ 78 (133)
+++=.++-.+|+.+..+....+...++....+. ..|.+ +. ...++..+..+..-.-......+.. |....
T Consensus 125 ~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~-~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~l 203 (237)
T cd07657 125 TDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGG-RGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLL 203 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344555555555555555555554433221 12221 11 1334445554444444444444444 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 79 ENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 79 ~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
-.+...++.++..|...++.+|..|++.
T Consensus 204 P~ll~~lQ~l~E~ri~~~k~~l~~~~~~ 231 (237)
T cd07657 204 PGLLNSLQSLQEEFITQWKKILQEYLRY 231 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999874
No 236
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.15 E-value=3.9e+02 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKS 68 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~ 68 (133)
.+...++.+|..++....
T Consensus 358 ~~~~~l~~ei~~l~~~~~ 375 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFV 375 (562)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333444444444444433
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.09 E-value=3.2e+02 Score=21.70 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~ 111 (133)
.-+|..|...| +...+.-+.+.+++++-.+.|+..|.......-..++..-++..+..+
T Consensus 119 ~vqIa~L~rql---q~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~ 177 (258)
T PF15397_consen 119 AVQIANLVRQL---QQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPM 177 (258)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555544 334445567788888888888888888877777777776665554433
No 238
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=27.09 E-value=1.3e+02 Score=23.11 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
..|..|+.++.+|+..+...+.+|..+..
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~ 193 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKK 193 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 239
>PRK10698 phage shock protein PspA; Provisional
Probab=26.80 E-value=2.9e+02 Score=21.09 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 7 AFTDRSSALLTVQTLLSELSSLQMRAE 33 (133)
Q Consensus 7 a~~~R~~~~~~~q~a~~~L~~kr~~~~ 33 (133)
+|.++..+-.........+..-....+
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~ 116 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLA 116 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443333333333333333333333
No 240
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=26.66 E-value=2.5e+02 Score=20.28 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa 104 (133)
+..++.|+.+.+.+.+....+++.-...=..+++.-+.+.+
T Consensus 103 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la 143 (174)
T PRK07352 103 AEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELA 143 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555555555555444443
No 241
>PRK11519 tyrosine kinase; Provisional
Probab=26.54 E-value=4.8e+02 Score=23.47 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
..+..+...+..++..+...+.++..+.+ .|.+--+.+|..+...-+-.
T Consensus 339 P~v~~l~~~~~~L~~~~~~l~~~~~~lp~---~e~~~~~L~Re~~~~~~lY~ 387 (719)
T PRK11519 339 PAYRTLLEKRKALEDEKAKLNGRVTAMPK---TQQEIVRLTRDVESGQQVYM 387 (719)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655555444332 33333444555655554433
No 242
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.46 E-value=2.3e+02 Score=19.85 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 100 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l 100 (133)
...+..|+..+.+++..+..++...-.....++........+|. |+..+-
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke-e~~klk 121 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE-ELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35555555555555665555555555555555555555554444 444433
No 243
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.36 E-value=2.3e+02 Score=19.83 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+|++.|+..|..++..-+..+.+|+.+...+
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555554444
No 244
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.22 E-value=2.1e+02 Score=19.37 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+|+..|+..+..++......+.+++.+...+
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655555543
No 245
>PHA03161 hypothetical protein; Provisional
Probab=26.05 E-value=2.7e+02 Score=20.38 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD--KERRADFLNMLKGFV 104 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~--~ek~~d~k~~l~~fa 104 (133)
.++...++.-|..++..++.-+++.+.++...+..|++++ .+|+.|++.-|.-=+
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~EL 109 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEI 109 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777778888888888888888888888887 477888887765444
No 246
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=25.99 E-value=2e+02 Score=18.92 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHH
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDA 66 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~ 66 (133)
+|+.++++-++-+.+.......|+.+|++.-.-.-. .---|.+=..++|+.+-.+|.++.+.
T Consensus 2 sVH~aItaH~~Kq~~~~k~F~~Le~~RE~aIeeav~--~c~~g~pFs~d~IN~vT~~mN~LAk~ 63 (84)
T PF10752_consen 2 SVHKAITAHSQKQHAIIKQFLQLEQQREAAIEEAVS--LCKQGEPFSTDKINEVTKEMNELAKQ 63 (84)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCcHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999776432110 10112222269999999998887543
No 247
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=25.69 E-value=5.1e+02 Score=23.56 Aligned_cols=69 Identities=7% Similarity=0.161 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 57 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 57 ~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
+.++.++..+|+.-++.|=..+=.-.-||+-.+..+.-+|-+-|..|+.....++--+...=..|.|-.
T Consensus 156 esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk 224 (812)
T KOG1451|consen 156 ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFK 224 (812)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHH
Confidence 678888999999999999999988889999999999999999999999999999988887777777644
No 248
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.55 E-value=3.2e+02 Score=21.09 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 111 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~ 111 (133)
...++.+|..++..+...++.|-.....+-+=-.|.++++..-.+..+.+|+...+-..
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVl 100 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVL 100 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 56777777777777777766664443333333334445555555555555655555443
No 249
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.23 E-value=2e+02 Score=18.79 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEY 74 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~ 74 (133)
..+..|..+-..+.+.++.+....
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHH
Confidence 444444444444444444444443
No 250
>PF09718 Tape_meas_lam_C: Lambda phage tail tape-measure protein (Tape_meas_lam_C); InterPro: IPR006431 This entry is represented by the C-terminal region of Bacteriophage lambda, GpH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group are characterised by a relatively well-conserved region near the C terminus of GpH - the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=25.10 E-value=1.8e+02 Score=18.17 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 96 FLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 96 ~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
++..+.+|++..-.++.++.++|...+..+
T Consensus 8 ~~~a~~~~~~~a~n~a~~~~~~~~~a~~~~ 37 (78)
T PF09718_consen 8 AKSALADYADSAQNVASQAEDAFSSAFDGM 37 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655544
No 251
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.08 E-value=5e+02 Score=23.24 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
.+.+..|+.++...+.-+..|+.+-+..-+ +..|++.-
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLe-ilkevene 457 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLE-ILKEVENE 457 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 588888888888888888888877666543 34455443
No 252
>KOG3518 consensus Putative guanine nucleotide exchange factor [General function prediction only]
Probab=25.03 E-value=3.4e+02 Score=22.90 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhch
Q 032820 77 IKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEK---IANVWAKVAEETSGY 128 (133)
Q Consensus 77 i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~---~~~~We~~~~~~~~~ 128 (133)
..+++-.|+-.-++.=+.|+++++.+|++.-.+-+.+ +++.-..++.+++.|
T Consensus 121 ~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~i 175 (521)
T KOG3518|consen 121 HLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDI 175 (521)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHH
Confidence 3456666666666677889999999999998877766 344444555544443
No 253
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=25.03 E-value=2.3e+02 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.|+..-...|..+..++..|+...+.+
T Consensus 43 ~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 43 ARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 254
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=24.91 E-value=3.5e+02 Score=21.34 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL--------------ERLDKERRADFLNMLKGFV 104 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~--------------~RF~~ek~~d~k~~l~~fa 104 (133)
++.+.++...+......++.++.+|....+.+...- +.++.+|..-|+++|..+-
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~ 235 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIK 235 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888887776665543 4455567777777776655
No 255
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.69 E-value=1.8e+02 Score=17.97 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
+++..++......+.+........+.++..
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 256
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.63 E-value=3.2e+02 Score=20.81 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
..+++.++.+.+.=-..+-+=++..+.+|..=||++|..|+..--.++.+.-+..+.+...+.++
T Consensus 145 ~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~ 209 (228)
T cd07650 145 VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEF 209 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCC
Confidence 44455555555555555555677788899999999999999999999999888888888877665
No 257
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=24.50 E-value=1.8e+02 Score=18.00 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 3 AVRSAFTDRSSALLTVQTLLSELSSLQM 30 (133)
Q Consensus 3 avk~a~~~R~~~~~~~q~a~~~L~~kr~ 30 (133)
.+-..+.+|.++...++.|...+.+...
T Consensus 7 ~L~~Lv~~R~~~~~kLE~a~~~~~~~~~ 34 (85)
T PF14703_consen 7 KLEKLVEEREKAVRKLESAESKYLKNAN 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4667899999999999999999976666
No 258
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=24.33 E-value=3.3e+02 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 55 ELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 55 ~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.++..+.+....++.|+..|+...+..
T Consensus 115 k~~k~~~~a~~~leKAK~~Y~~~c~e~ 141 (234)
T cd07652 115 RAEKKVQDAEAAAEKAKARYDSLADDL 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999998776554
No 259
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.25 E-value=1.7e+02 Score=19.30 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 96 FLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 96 ~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
--..|..++..+..++..+++.|...+..+
T Consensus 20 ~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~ 49 (114)
T cd03562 20 SIQTLTKLAIENRKHAKEIVEIIEKHIKKC 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345577788888899999999999887654
No 260
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.25 E-value=3.5e+02 Score=24.52 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032820 55 ELKETIRVTEDAKSV 69 (133)
Q Consensus 55 ~l~~eI~~~e~~v~~ 69 (133)
+|+.+|++.-.+.++
T Consensus 104 el~seI~~~n~kiEe 118 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEE 118 (907)
T ss_pred HHHhHHHHHHHHHHH
Confidence 333333333333333
No 261
>PRK14151 heat shock protein GrpE; Provisional
Probab=23.98 E-value=3.1e+02 Score=20.36 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK----ERRADFLNMLKGFVVNQVGY 110 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~----ek~~d~k~~l~~fa~~qi~~ 110 (133)
.....++.+|.+++..++..+..| -+..-|++.|.+ ++..-.+..+.+|+...+..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~----lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv 79 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQS----LRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPV 79 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 556667777777777777666555 344455555543 33333344444454444433
No 262
>PRK10698 phage shock protein PspA; Provisional
Probab=23.97 E-value=3.3e+02 Score=20.77 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIK 78 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~ 78 (133)
.-+.+|+..+..++.++..++...+.+.
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444443
No 263
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.88 E-value=5.7e+02 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 103 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~f 103 (133)
++...+..+.+.+.+.+..++|....=.+-..+..+++..+
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444
No 264
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=23.80 E-value=3.1e+02 Score=21.24 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 90 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ 90 (133)
.++..++.++.++..+-...+..++.+.++++.++++-..
T Consensus 125 srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~ 164 (217)
T COG1777 125 SRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDG 164 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5667777778888888888888899999999999886544
No 265
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=23.63 E-value=2.1e+02 Score=18.39 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 91 ERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 91 ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
.|=.+...+|..-+..+..||+-++..|......+.
T Consensus 38 ~kC~e~~~~L~kCM~ahsdYY~P~La~~k~~~e~~~ 73 (76)
T PF07802_consen 38 EKCFEATAALRKCMEAHSDYYEPILAAEKAAEEHME 73 (76)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999998877664
No 266
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=23.45 E-value=2.6e+02 Score=19.34 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 55 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFL--NMLKGFVVNQVGYAEKIANVWAKVA 122 (133)
Q Consensus 55 ~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k--~~l~~fa~~qi~~~~~~~~~We~~~ 122 (133)
+++..|.++|..+...+.-++++ ...|+++|..--..+++ +.|.+.+ -...++++++=.+++
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~---~~~eLEkYkqly~eElk~r~SLs~kL---~ktnerLaevstkLl 67 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDS---NKTELEKYKQLYLEELKLRKSLSNKL---NKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHH
Confidence 45555666666666665444443 35667777665555543 3343332 244555555554444
No 267
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.39 E-value=2.4e+02 Score=19.04 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHH
Q 032820 6 SAFTDRSSALLTVQTLL---SELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIR 61 (133)
Q Consensus 6 ~a~~~R~~~~~~~q~a~---~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~ 61 (133)
.+|++|.+|.-++=--+ +.|.+++.++.+-.. ...+.|+.|+..|+
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~----------~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIE----------HHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcC
Confidence 67888888876654433 444444444443211 13577777777763
No 268
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.38 E-value=5.8e+02 Score=23.39 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032820 69 VAINEYERIKENNRTE 84 (133)
Q Consensus 69 ~a~~~~e~i~~~~~~E 84 (133)
.++.+++.+.+.++.|
T Consensus 570 ~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 570 EAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 269
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.72 E-value=4.1e+02 Score=21.38 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 032820 15 LLTVQTLLSELSSLQMRAEKLEA 37 (133)
Q Consensus 15 ~~~~q~a~~~L~~kr~~~~kl~~ 37 (133)
.......+..+...+.++..+..
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777777766654
No 270
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=22.58 E-value=6.8e+02 Score=24.51 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINE-YERIKENNRTELERLDKE- 91 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~-~e~i~~~~~~E~~RF~~e- 91 (133)
++-.+.+++++|.-.|.++.++-. |. +|+.- .+|+.+|+++..++.. |+.....+-+++.-.+.+
T Consensus 1129 ~ia~lnnlqqElklLRnEK~Rmh~------~~-----dkVDF--SDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~ 1195 (1439)
T PF12252_consen 1129 AIANLNNLQQELKLLRNEKIRMHS------GT-----DKVDF--SDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEK 1195 (1439)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhcc------CC-----CcccH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhC
Confidence 444555555666655555554432 11 22222 4566677777776655 566777777788888763
Q ss_pred --HHHHHHHHHHHHHH
Q 032820 92 --RRADFLNMLKGFVV 105 (133)
Q Consensus 92 --k~~d~k~~l~~fa~ 105 (133)
...|+|.|+..|-+
T Consensus 1196 PKnltdvK~missf~d 1211 (1439)
T PF12252_consen 1196 PKNLTDVKSMISSFND 1211 (1439)
T ss_pred CCchhhHHHHHHHHHh
Confidence 34578888877743
No 271
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=22.40 E-value=2.8e+02 Score=19.45 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
.+|.+....++.+....+.-....+..+.|++.+
T Consensus 87 edid~~~~~l~~~~~~~~~~~~~~r~~~~~le~~ 120 (131)
T PRK06228 87 TDLGELREAVEQEFLTLDERERSVRSALAKLESG 120 (131)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4677777777777777788878888888887754
No 272
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.34 E-value=2.7e+02 Score=19.17 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
.+..||...+.+|.+.+..+..|+..
T Consensus 67 e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777778887777777777766
No 273
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.31 E-value=3.6e+02 Score=20.57 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~ 71 (133)
.+|..|...+.+++.+.+.|.
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444433333333
No 274
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.31 E-value=3.2e+02 Score=20.02 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+..+..|+.+.+.+......+++.+...=..++..+..+++..
T Consensus 115 ~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~ 157 (181)
T PRK13454 115 DVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEA 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666655543
No 275
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=21.94 E-value=2.6e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
.+|.++..++..+..+.+..-...+..+.|.+.+
T Consensus 84 edId~l~~~i~~~~~~~~~~~~~~r~~~~~l~~~ 117 (122)
T TIGR03166 84 TELEELEEAVRQEFLTLDEQERSARSAMARLESD 117 (122)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777888888888888887654
No 276
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.80 E-value=7.3e+02 Score=23.95 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
...+++++.++..++.........|+.....+..|+++++..
T Consensus 754 ~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l 795 (1074)
T KOG0250|consen 754 EAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDAL 795 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344666677777777777777777888888888888887654
No 277
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.75 E-value=7.7e+02 Score=24.18 Aligned_cols=98 Identities=12% Similarity=0.169 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhchhc-ccCCC-ccHHHHHHHHHHHHHHHHHHH--------H
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQM--RAEKLEAASSK-IFGGD-KSRIRKIEELKETIRVTEDAK--------S 68 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~--~~~kl~~~~sr-~~g~~-~~r~~K~~~l~~eI~~~e~~v--------~ 68 (133)
|.++|..+.+++-.. .+-.|+..|+++.- .+..|...+|. =.|.. ..-.++|..+.+++.-++.+| +
T Consensus 1017 MDaIKqmIekKv~L~-~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~e 1095 (1439)
T PF12252_consen 1017 MDAIKQMIEKKVVLQ-ALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAE 1095 (1439)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHH
Confidence 789999999888555 88888888887653 23333322110 01111 122577888888877777554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 69 VAINEYERIKENNRTELERLDKERRADFLNM 99 (133)
Q Consensus 69 ~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~ 99 (133)
..+..|+.....+.+=|--|+..+..|+-.+
T Consensus 1096 Kvr~rYe~LI~~iTKrIt~LEk~k~~~l~~i 1126 (1439)
T PF12252_consen 1096 KVRVRYETLITDITKRITDLEKAKLDNLDSI 1126 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 6778899988888888888888887776543
No 278
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.61 E-value=3.3e+02 Score=19.84 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 64 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 64 e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
+.....|+.+.+.+.+..+.+++.-...=..+++..+.+.+..
T Consensus 111 e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~ 153 (184)
T PRK13455 111 EQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVA 153 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777777776666666666666655543
No 279
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.54 E-value=63 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.363 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 032820 98 NMLKGFVVNQVGYAEKI---ANVWAKVAEETS 126 (133)
Q Consensus 98 ~~l~~fa~~qi~~~~~~---~~~We~~~~~~~ 126 (133)
.+|-.|++.|..+.--+ =++|+.++..+.
T Consensus 42 ~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~~ 73 (74)
T COG4479 42 HEISDYLETNADFLFNMSVFDEIWEEYLEHLK 73 (74)
T ss_pred HHHHHHHHhcCCcccchhhHHHHHHHHHHHhc
Confidence 46778888888887543 389999988764
No 280
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.49 E-value=6.4e+02 Score=23.13 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 9 TDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 9 ~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
..|...-......++++...+..+..|++..+-.-.+..+ ...+..--.+|..++..|..+...+..+.+.+...+.-|
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~-~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eF 630 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIA-VHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEF 630 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhH-HhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677778888888888888887643221111100 111111123566666666666667777777776666655
No 281
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.45 E-value=6.4e+02 Score=23.13 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
....+++....+++...+..+++.+.+.+..++|....=.+-..+.+.++..+=.
T Consensus 536 ~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 536 KLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555566666666666666655555555555555543
No 282
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=1.6e+02 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRAEK 34 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~k 34 (133)
|..|+.|+.+|..++....+.+.+=..++.-+.-
T Consensus 120 M~~I~~Vl~ER~~Ay~~~~~~e~~~~~~k~~~~~ 153 (213)
T KOG3331|consen 120 MWRIEHVLNERNLAYSASRTGEQDERERKKFLDT 153 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 7789999999999999888877665555554443
No 283
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.40 E-value=4.4e+02 Score=21.30 Aligned_cols=35 Identities=29% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 52 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 90 (133)
Q Consensus 52 K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ 90 (133)
....|+.++...+.+++.|..- ......|-.||..
T Consensus 264 e~~~l~~~~~~~~~kl~rA~~L----i~~L~~E~~RW~~ 298 (344)
T PF12777_consen 264 EKQELEEEIEETERKLERAEKL----ISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHhhhccHHHH----HhhhcchhhhHHH
Confidence 3444555555555555555443 3333456677743
No 284
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=21.36 E-value=4.5e+02 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.-+..++.++..++..++.|+..++..
T Consensus 137 ~~~d~a~~~~~~a~a~~~~a~a~l~~a 163 (385)
T PRK09859 137 QDYDTARTQLNEAEANVTVAKAAVEQA 163 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666544
No 285
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.04 E-value=3.5e+02 Score=19.94 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL----DKERRADFLNMLKGFVVNQVG 109 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF----~~ek~~d~k~~l~~fa~~qi~ 109 (133)
.....++.+|..++..+...+..|- +..-|++.| ++++..-.+....+|+...+.
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~l----R~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLp 76 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADAL----RERADLENQRKRIARDVEQARKFANEKLLGELLP 76 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455577777777777777666664 444455444 344444444444444444443
No 286
>PF08725 Integrin_b_cyt: Integrin beta cytoplasmic domain; InterPro: IPR014836 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the cytoplasmic domain of integrin beta subunits. ; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3G9W_C 2JF1_T 2BRQ_D 1MK9_E 1KUZ_B 2LJF_A 1MK7_C 2RN0_A 1M8O_B 2LJE_A ....
Probab=20.88 E-value=47 Score=19.34 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRA 94 (133)
Q Consensus 82 ~~E~~RF~~ek~~ 94 (133)
++|+.+|+.++..
T Consensus 9 rrEy~kFe~E~~~ 21 (47)
T PF08725_consen 9 RREYAKFEKERKK 21 (47)
T ss_dssp HCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788999988763
No 287
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.88 E-value=1.8e+02 Score=19.14 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 58 ETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+|+.+|.++.+++..++.+..+.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555544
No 288
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=20.87 E-value=3.1e+02 Score=24.77 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 5 RSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 84 (133)
Q Consensus 5 k~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E 84 (133)
++++..|...+.+|...-..+...+...+.|+.. ..++++. .+.+..|...|.+-+..|+.-+.. +..+++-
T Consensus 51 ~~vl~~~~~l~~~yd~~~~~~~~~~~~~~~l~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~----n~~l~~s 122 (828)
T PRK13837 51 RDVLRARAGLLRNYDPLVRRLGALRDALADLRRL--ADGDAEL--DQLLDRLKASVDRTDAAVEAFKSQ----NALLQNS 122 (828)
T ss_pred HHHHHHccchhcccchhhhhHHHHHHHHHHHHHh--hccchhH--HHHHHHHHHhhhhHHHHHHHHhcc----cHHHHHH
Confidence 5789999999999999999999999999999874 1122222 577888888887777777655444 3445555
Q ss_pred HHHHH
Q 032820 85 LERLD 89 (133)
Q Consensus 85 ~~RF~ 89 (133)
+..|.
T Consensus 123 l~~~~ 127 (828)
T PRK13837 123 LAYFN 127 (828)
T ss_pred HHHHH
Confidence 55554
No 289
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=20.84 E-value=4.3e+02 Score=20.89 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNR--------------TELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~--------------~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
++.+.++...+......++.+..+|+.....+- .-++.|+.+|..=||++|..|-.
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~ 236 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQ 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777765554432 23445666677777777776644
No 290
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.71 E-value=4.7e+02 Score=21.27 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032820 21 LLSELSSLQMRAEKLE 36 (133)
Q Consensus 21 a~~~L~~kr~~~~kl~ 36 (133)
|--.=++||++.+.|.
T Consensus 239 AtRYRqKkRae~E~l~ 254 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALL 254 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 291
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.65 E-value=4e+02 Score=20.44 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRAD----FLNMLKGFVVNQVGY 110 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d----~k~~l~~fa~~qi~~ 110 (133)
..+..|+.+|.+++..++..+..| -+..-|++.|.+--..+ .+.....|+...+..
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~----lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpV 111 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQY----LRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPV 111 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467778889988888888777666 45566666665444444 444444444444443
No 292
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.52 E-value=3e+02 Score=18.92 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRT 83 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~ 83 (133)
..|++.++.+|..++...+..+..+......++.
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777776666666555543
No 293
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.51 E-value=91 Score=27.08 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSV 69 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~ 69 (133)
+||++|+.+|+++++++..
T Consensus 31 qkie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDD 49 (489)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4677777777666666663
No 294
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.48 E-value=4.9e+02 Score=23.51 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 49 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 49 r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
..+.+..++.+|.+++...+..+++...+.+....++..+
T Consensus 227 p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~ 266 (759)
T PF01496_consen 227 PEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAW 266 (759)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889998888888888888887777776666554
No 295
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.28 E-value=3.4e+02 Score=19.55 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=23.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 49 RIRKIEELKE---TIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 49 r~~K~~~l~~---eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
++..|..|+. .+.++...++..+..++...+....++.-.
T Consensus 39 ~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 39 ADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 666666677766666666666655555433
No 296
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.25 E-value=3.9e+02 Score=20.19 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRAD 95 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d 95 (133)
+..+..++.+|..++..++..+..|- +..-|++.|.+--..|
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~l----R~~AEfeN~rkR~~kE 79 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYL----RSQAEIQNMQNRYAKE 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 57778888888888888877766663 5555555554443333
No 297
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.12 E-value=6.5e+02 Score=22.71 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQV 108 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi 108 (133)
...+++..++..|..++.+....+.+...+....-.|+ .-|..+.--++.++...|-
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~----~~k~aev~lim~eLe~aq~ 249 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEV----AAKAAEVSLIMTELEDAQQ 249 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777776665555544443 2345555555665555553
No 298
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=20.06 E-value=3.1e+02 Score=19.04 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=38.3
Q ss_pred HHHHHHHHHhchhccc--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 28 LQMRAEKLEAASSKIF--GGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 28 kr~~~~kl~~~~sr~~--g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
++...+||.+.|+|.. +-...|..+...++..|.+-...++..+.+|+.+...
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kv 109 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQKV 109 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778887764422 2233577888888899988888888888888876543
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.04 E-value=3.9e+02 Score=20.12 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 5 RSAFTDRSSALLTVQTLLSELSSLQMRAEKLE 36 (133)
Q Consensus 5 k~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~ 36 (133)
+.++.++.....+.......+...+...++|.
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~ 119 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELAAVEETLAKLQ 119 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 300
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=20.01 E-value=4.1e+02 Score=20.36 Aligned_cols=48 Identities=25% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
.-+.++...+..++..+..+..+|..+...+ ++...+...+|..++..
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l----~~~~~~~~~~~~~~~~~ 218 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRL----ERLRLEWESALRKGLNQ 218 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3355566666666666666666666554443 33444444444444433
Done!