Query 032820
Match_columns 133
No_of_seqs 102 out of 217
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyt_A Sorting nexin-9; 3-heli 99.5 8.9E-14 3.1E-18 112.3 11.0 94 2-127 272-365 (366)
2 4akv_A Sorting nexin-33; trans 99.4 1.1E-12 3.9E-17 106.7 12.2 94 2-127 292-385 (386)
3 2fic_A Bridging integrator 1; 99.2 2.6E-10 8.8E-15 87.0 14.2 108 2-130 144-251 (251)
4 1uru_A Amphiphysin; endocytosi 99.1 2E-10 6.9E-15 86.8 9.4 112 2-132 129-240 (244)
5 4avm_A Bridging integrator 2; 98.4 4.1E-06 1.4E-10 63.8 12.6 108 2-130 125-232 (237)
6 4a3a_A Amphiphysin; structural 98.3 1.1E-05 3.7E-10 61.8 12.6 108 2-130 130-237 (243)
7 1zww_A SH3-containing GRB2-lik 97.5 0.00077 2.6E-08 51.4 9.8 65 63-128 179-243 (256)
8 2z0v_A SH3-containing GRB2-lik 97.3 0.0024 8.3E-08 48.2 10.5 65 63-128 163-227 (240)
9 2q12_A DIP13 alpha, DCC-intera 96.4 0.16 5.6E-06 38.2 14.2 71 58-128 158-229 (265)
10 2q13_A DCC-interacting protein 96.2 0.091 3.1E-06 41.7 12.0 69 60-128 160-229 (385)
11 2efl_A Formin-binding protein 95.5 0.56 1.9E-05 35.4 17.8 78 51-128 172-264 (305)
12 2efk_A CDC42-interacting prote 95.5 0.57 1.9E-05 35.4 18.3 78 51-128 165-257 (301)
13 2v0o_A FCHO2, FCH domain only 93.6 1.6 5.5E-05 32.4 18.4 78 51-128 170-247 (276)
14 4h8s_A DCC-interacting protein 92.3 3.5 0.00012 32.7 13.7 66 61-126 184-250 (407)
15 3aco_A Pacsin2, protein kinase 90.0 5.6 0.00019 30.8 13.7 77 51-128 192-284 (350)
16 4dyl_A Tyrosine-protein kinase 90.0 5.3 0.00018 31.9 11.6 77 51-127 164-255 (406)
17 3haj_A Human pacsin2 F-BAR; pa 89.7 7.3 0.00025 31.8 14.9 57 51-107 185-255 (486)
18 2x3v_A Syndapin I, protein kin 89.3 6.1 0.00021 30.3 15.1 56 51-106 183-252 (337)
19 4ani_A Protein GRPE; chaperone 89.1 2.9 0.0001 31.1 8.8 54 50-103 65-118 (213)
20 1i4d_A Arfaptin 2, partner of 88.6 6.2 0.00021 29.5 12.7 105 7-123 100-204 (224)
21 3lay_A Zinc resistance-associa 85.3 8.3 0.00028 27.7 9.1 51 18-75 87-137 (175)
22 1x79_B RAB GTPase binding effe 83.3 8.1 0.00028 25.9 9.5 79 16-94 6-88 (112)
23 3nmd_A CGMP dependent protein 82.7 6.5 0.00022 24.3 7.3 47 17-77 20-66 (72)
24 2etd_A LEMA protein; bromodoma 81.7 10 0.00035 27.0 8.3 40 51-90 103-142 (171)
25 3plt_A Sphingolipid long chain 81.6 15 0.0005 27.7 12.1 71 17-88 98-168 (234)
26 2z5i_A TM, general control pro 79.4 6.9 0.00024 22.5 5.8 34 50-83 11-44 (52)
27 3abh_A Pacsin2, protein kinase 79.2 18 0.00062 27.2 15.8 77 51-128 206-284 (312)
28 1ic2_A Tropomyosin alpha chain 79.1 9.1 0.00031 23.7 9.3 61 11-78 15-75 (81)
29 3mq7_A Bone marrow stromal ant 78.5 13 0.00044 25.1 8.9 31 50-80 70-100 (121)
30 1dkg_A Nucleotide exchange fac 76.1 8.8 0.0003 28.0 6.6 53 50-102 41-97 (197)
31 3u1c_A Tropomyosin alpha-1 cha 75.1 14 0.00049 23.9 9.9 62 10-78 17-78 (101)
32 3trt_A Vimentin; cytoskeleton, 74.8 12 0.0004 22.7 8.8 45 63-107 7-51 (77)
33 3iv1_A Tumor susceptibility ge 74.5 13 0.00045 23.2 9.2 68 2-79 6-74 (78)
34 3na7_A HP0958; flagellar bioge 70.5 30 0.001 25.7 9.5 19 18-36 62-80 (256)
35 3mq9_A Bone marrow stromal ant 69.7 26 0.00088 27.9 8.6 25 51-75 443-467 (471)
36 3abh_A Pacsin2, protein kinase 66.7 38 0.0013 25.4 13.2 71 51-125 192-262 (312)
37 2pms_C Pneumococcal surface pr 66.4 17 0.00059 24.8 5.8 40 21-71 49-88 (125)
38 1jcd_A Major outer membrane li 65.4 17 0.00059 20.9 7.7 32 50-81 17-48 (52)
39 3vkg_A Dynein heavy chain, cyt 65.1 1.3E+02 0.0044 30.9 13.7 14 111-124 2125-2138(3245)
40 3u59_A Tropomyosin beta chain; 62.2 28 0.00096 22.3 10.3 61 10-77 17-77 (101)
41 2ykt_A Brain-specific angiogen 60.8 50 0.0017 24.8 14.9 105 14-128 126-232 (253)
42 2yy0_A C-MYC-binding protein; 59.3 19 0.00066 20.6 4.4 32 50-81 18-49 (53)
43 3mq7_A Bone marrow stromal ant 56.7 42 0.0014 22.6 11.1 30 51-80 78-107 (121)
44 4dzo_A Mitotic spindle assembl 50.3 54 0.0019 21.9 6.7 37 59-103 5-41 (123)
45 1gmj_A ATPase inhibitor; coile 49.3 47 0.0016 21.0 9.1 29 51-79 51-79 (84)
46 2dnx_A Syntaxin-12; snare, HAB 48.2 59 0.002 21.7 13.5 73 43-115 42-119 (130)
47 3cve_A Homer protein homolog 1 48.1 45 0.0015 20.4 7.2 40 51-90 7-49 (72)
48 3a6m_A Protein GRPE, HSP-70 co 46.4 2.9 9.9E-05 30.1 -0.9 55 51-105 26-80 (177)
49 3oja_B Anopheles plasmodium-re 46.2 1.2E+02 0.004 24.6 10.7 22 53-74 539-560 (597)
50 3cvf_A Homer-3, homer protein 46.0 52 0.0018 20.5 7.0 40 51-90 13-55 (79)
51 3qf7_D MRE11; ABC-ATPase, ATPa 45.0 19 0.00066 20.0 2.6 35 94-128 7-41 (50)
52 2l5g_B Putative uncharacterize 44.3 39 0.0013 18.6 5.5 32 50-81 8-39 (42)
53 2akf_A Coronin-1A; coiled coil 44.1 32 0.0011 17.5 3.5 24 56-79 4-27 (32)
54 4fla_A Regulation of nuclear P 42.9 81 0.0028 21.8 12.7 107 12-126 28-134 (152)
55 3g9w_C Integrin beta-1D; prote 42.4 11 0.00039 21.6 1.5 12 82-93 11-22 (52)
56 2dfs_A Myosin-5A; myosin-V, in 41.9 2E+02 0.0068 26.1 12.8 33 50-82 983-1015(1080)
57 4efa_G V-type proton ATPase su 41.1 78 0.0027 21.1 8.0 43 63-105 22-68 (119)
58 3swy_A Cyclic nucleotide-gated 40.7 47 0.0016 18.5 7.2 40 50-89 4-43 (46)
59 3i2w_A Syndapin, LD46328P; EFC 40.1 1.1E+02 0.0037 22.5 15.1 57 51-107 184-240 (290)
60 2f1m_A Acriflavine resistance 39.1 1.1E+02 0.0037 22.2 10.5 60 13-76 64-123 (277)
61 3teq_A Stromal interaction mol 36.8 87 0.003 20.4 6.9 31 60-90 59-89 (101)
62 2dfs_A Myosin-5A; myosin-V, in 36.7 2.4E+02 0.0083 25.5 12.3 23 51-73 991-1013(1080)
63 2knc_B Integrin beta-3; transm 36.4 24 0.00082 21.9 2.4 13 82-94 41-53 (79)
64 2p2u_A HOST-nuclease inhibitor 36.2 1.1E+02 0.0038 21.4 8.9 54 51-108 23-76 (171)
65 2v4h_A NF-kappa-B essential mo 36.1 94 0.0032 20.6 8.7 51 14-75 29-79 (110)
66 2lw1_A ABC transporter ATP-bin 35.6 78 0.0027 19.6 9.4 59 16-77 22-82 (89)
67 2xdj_A Uncharacterized protein 34.3 85 0.0029 19.6 5.5 33 50-82 26-58 (83)
68 1s4x_A Integrin beta-3; cell a 34.2 22 0.00075 21.5 1.9 12 82-93 29-40 (67)
69 4etp_A Kinesin-like protein KA 33.7 90 0.0031 24.9 6.0 35 50-84 9-43 (403)
70 3ghg_C Fibrinogen gamma chain; 33.3 1.9E+02 0.0066 23.3 10.9 93 14-115 28-121 (411)
71 3na7_A HP0958; flagellar bioge 31.6 1.5E+02 0.0053 21.7 13.4 26 51-76 60-85 (256)
72 3l32_A Phosphoprotein; antipar 31.4 37 0.0013 18.9 2.3 36 94-129 6-41 (45)
73 2wq1_A General control protein 31.2 60 0.002 16.8 4.0 22 50-71 6-27 (33)
74 1vcs_A Vesicle transport throu 31.0 1E+02 0.0036 19.6 8.2 49 17-74 13-61 (102)
75 3qwe_A GMIP, GEM-interacting p 30.9 1.8E+02 0.0061 22.2 14.3 28 61-88 180-207 (279)
76 2xus_A Breast cancer metastasi 30.6 77 0.0026 17.9 6.7 39 10-64 7-45 (49)
77 1yhn_B RILP, RAB interacting l 30.5 89 0.003 18.6 5.1 32 1-32 2-33 (65)
78 3swf_A CGMP-gated cation chann 30.0 99 0.0034 19.0 7.2 39 50-88 6-44 (74)
79 2lse_A Four helix bundle prote 36.2 11 0.00038 23.7 0.0 42 67-114 24-65 (101)
80 2kv9_B Integrin beta-3; platel 29.7 23 0.00079 22.0 1.5 13 82-94 37-49 (75)
81 1m8o_B Platele integrin BETA3 28.9 22 0.00076 19.8 1.2 13 82-94 9-21 (47)
82 3qne_A Seryl-tRNA synthetase, 28.5 2.5E+02 0.0084 23.1 9.9 27 51-77 78-104 (485)
83 2yqr_A KIAA0907 protein; struc 28.5 1.2E+02 0.004 20.1 5.0 27 66-92 85-111 (119)
84 3ghg_B Fibrinogen beta chain; 28.5 2.5E+02 0.0085 23.1 13.5 105 13-125 84-189 (461)
85 4dzo_A Mitotic spindle assembl 28.3 1.3E+02 0.0045 20.0 5.7 33 51-83 4-36 (123)
86 3iox_A AGI/II, PA; alpha helix 28.2 2.6E+02 0.0089 23.2 16.0 63 55-119 45-107 (497)
87 3lnn_A Membrane fusion protein 27.4 2E+02 0.0067 21.6 8.4 61 14-78 96-156 (359)
88 3m3w_A Pacsin3, protein kinase 26.3 2.1E+02 0.0072 21.6 17.5 56 50-105 196-251 (320)
89 2dq0_A Seryl-tRNA synthetase; 26.2 2.6E+02 0.0088 22.6 10.0 27 51-77 76-102 (455)
90 2rr7_A Dynein heavy chain 9; m 26.1 65 0.0022 22.1 3.5 33 56-88 2-34 (155)
91 3rrk_A V-type ATPase 116 kDa s 25.9 2.2E+02 0.0074 21.6 7.2 41 48-88 223-263 (357)
92 1nwd_B GAD, glutamate decarbox 25.9 66 0.0023 15.6 2.7 15 111-125 11-25 (28)
93 3azd_A Short alpha-tropomyosin 25.3 20 0.00067 19.1 0.5 24 50-73 10-33 (37)
94 2b9c_A Striated-muscle alpha t 24.7 1.7E+02 0.0058 20.0 9.9 40 49-88 50-92 (147)
95 3ni0_A Bone marrow stromal ant 24.1 1.5E+02 0.0051 19.1 10.1 22 50-71 66-87 (99)
96 3jsv_C NF-kappa-B essential mo 24.0 1.5E+02 0.0051 19.0 9.0 51 14-75 7-57 (94)
97 1xpp_A TA1416, DNA-directed RN 23.9 1.5E+02 0.0053 19.4 4.9 31 61-91 76-106 (115)
98 3mtu_E Head morphogenesis prot 23.4 1.4E+02 0.0047 18.5 4.7 26 56-81 42-67 (77)
99 2er8_A Regulatory protein Leu3 23.3 52 0.0018 19.0 2.2 22 49-70 47-68 (72)
100 1gmj_A ATPase inhibitor; coile 23.1 1.5E+02 0.005 18.6 9.6 12 6-17 20-31 (84)
101 3mud_A DNA repair protein XRCC 22.9 2.1E+02 0.0072 20.4 6.9 32 50-81 134-165 (175)
102 1kd8_A GABH AIV, GCN4 acid bas 21.5 1E+02 0.0035 16.2 4.3 24 50-73 7-30 (36)
103 3v86_A De novo design helix; c 20.8 85 0.0029 15.1 4.3 22 54-75 3-24 (27)
104 2zdi_C Prefoldin subunit alpha 20.8 2E+02 0.0068 19.3 5.3 34 50-83 104-137 (151)
105 1vf7_A Multidrug resistance pr 20.8 2.8E+02 0.0097 21.1 8.1 55 15-73 80-134 (369)
106 2cly_A ATP synthase B chain, m 20.7 2.5E+02 0.0087 20.5 11.4 66 48-113 96-164 (214)
107 3hnw_A Uncharacterized protein 20.2 2.1E+02 0.0071 19.3 11.0 54 19-79 64-117 (138)
108 2v71_A Nuclear distribution pr 20.2 2.5E+02 0.0085 20.2 11.5 42 50-91 62-103 (189)
109 1sz9_A PCF11 protein; RNA poly 20.0 67 0.0023 21.8 2.5 29 96-124 26-54 (144)
No 1
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.51 E-value=8.9e-14 Score=112.32 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|||++|+.|..++..++.+. |+... .|+.. ..++.++.+|+.|+..+
T Consensus 272 ~avKd~l~~r~~aL~k~~e~~-----------kl~~~------------~K~~~---------~~~~~~~~r~e~is~~~ 319 (366)
T 3dyt_A 272 GCFPDIIGTHKGAIEKVKESD-----------KLVAT------------SKITL---------QDKQNMVKRVSIMSYAL 319 (366)
T ss_dssp TTHHHHHHHHHHHHHHHHTHH-----------HHHHT------------TSSCH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHhc------------cCcch---------hHHHHHHHHHHHHHHHH
Confidence 689999999999888777753 22221 11110 14577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
+.|+.||+.+|..||+.+|.+|++.||++|+++++.|++++|.+..
T Consensus 320 ~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~ 365 (366)
T 3dyt_A 320 QAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 365 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998753
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=106.68 Aligned_cols=94 Identities=12% Similarity=0.207 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+|+|++|+.|..++..+..+. |+... +|.+ ..+++.++.+|+.|+..+
T Consensus 292 ~s~Kdll~~R~~aL~k~~ea~-----------kl~~~---------~K~~------------~~~~~e~~~r~e~IS~~~ 339 (386)
T 4akv_A 292 SNFPDIIHLQKGAFAKVKESQ-----------RMSDE---------GRMV------------QDEADGIRRRCRVVGFAL 339 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHT---------TSSC------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHh---------CCcc------------HHHHHHHHHHHHHHHHHH
Confidence 689999999998888776653 22221 1111 124556889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 127 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~ 127 (133)
+.|+.||+.+|..||+.+|.+|++.||++|++.++.|+.++|.+..
T Consensus 340 ~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 340 QAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998753
No 3
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=99.24 E-value=2.6e-10 Score=87.02 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|.+.++.|..+...+.+.+....+ .+.|+ ..++..++.|+.+|+.+++.+
T Consensus 144 ~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--------------d~~kl-------~kae~el~~ak~~ye~ln~~L 202 (251)
T 2fic_A 144 PDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK--------------DEAKI-------AKAEEELIKAQKVFEEMNVDL 202 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC--------------cHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888877765544432 02344 446666789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
+.||++|...+...|...|..|+..|..||.++.++|..+.+.+..+++
T Consensus 203 ~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~~ 251 (251)
T 2fic_A 203 QEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEK 251 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999987764
No 4
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=99.14 E-value=2e-10 Score=86.78 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|.+.++.|..+...|.+.+...++- .+ +.|+ ..++..++.|+.+|+.++..+
T Consensus 129 ~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~---------kd---~~kl-------~~ae~el~~ak~~ye~ln~~L 189 (244)
T 1uru_A 129 PEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR---------KD---DVKL-------TKGREQLEEARRTYEILNTEL 189 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT---------TB---CCTT-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccC---------cc---HHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998888877655321110 11 1333 345566788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANEN 132 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~~~ 132 (133)
+.||++|...+...|...|..|+..|..||.++...|+.+.|.+..+++..
T Consensus 190 ~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~ 240 (244)
T 1uru_A 190 HDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATES 240 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999998886654
No 5
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=98.44 E-value=4.1e-06 Score=63.79 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|.+.+..|..+...+.+.+.... +. +.|+ ..++..++.|+..|+.++...
T Consensus 125 ~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~-------------kd-~~kl-------~kae~el~~a~~~ye~lN~~L 183 (237)
T 4avm_A 125 SEIKERIAKRGRKLVDYDSARHHLEAVQNAKK-------------KD-EAKT-------AKAEEEFNKAQTVFEDLNQEL 183 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-------------CC-HHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------Cc-HHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999988888776543221 11 3444 445666888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
+.|++.|-.-+..=|-..|..|+..|..++..+...|..+.+.+.....
T Consensus 184 ~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~ 232 (237)
T 4avm_A 184 LEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLER 232 (237)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877653
No 6
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=98.33 E-value=1.1e-05 Score=61.77 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
+.|+.++.+|...++.|..+...+.+.+.... + .+.|+.+ ++..++.|+.+|+.++...
T Consensus 130 ~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~-------------k-d~~kl~k-------ae~el~~Ak~~Ye~lN~~L 188 (243)
T 4a3a_A 130 PDIKNRIAKRSRKLVDYDSARHHLEALQSSKR-------------K-DESRISK-------AEEEFQKAQKVFEEFNVDL 188 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-------------C-CHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHhccc-------------c-cHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999888877776543321 1 1345444 5566788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Q 032820 82 RTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 130 (133)
Q Consensus 82 ~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~~ 130 (133)
+.|++.|-.-|..=|-..|..|+..|..++..+...-..+.+.+...++
T Consensus 189 ~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~~ 237 (243)
T 4a3a_A 189 QEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGD 237 (243)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888777765543
No 7
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.51 E-value=0.00077 Score=51.43 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
++..++.|+.+|+..++.+..++..|-.. ..++-.-|..|+..|+.||+++.+.++.+.|.+...
T Consensus 179 ~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~ 243 (256)
T 1zww_A 179 PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEER 243 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999754 477779999999999999999999999999999754
No 8
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=97.33 E-value=0.0024 Score=48.22 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
.+..++.|+.+|+...+.+..++..|-..+ .++-..|..|+..|+.||+++.+.+..+.|.+...
T Consensus 163 ~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~ 227 (240)
T 2z0v_A 163 PDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMR 227 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899999999999999999997554 67777999999999999999999999999999644
No 9
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=96.42 E-value=0.16 Score=38.25 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhch
Q 032820 58 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA-KVAEETSGY 128 (133)
Q Consensus 58 ~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We-~~~~~~~~~ 128 (133)
..+.+.+..+..++..|...+=....-+...+..+..++-..|..|+..|..|++++.+.|. .+.|-+..+
T Consensus 158 ~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l 229 (265)
T 2q12_A 158 KVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANI 229 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568889999999999999988888888899999999999999999999999999999984 888877654
No 10
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=96.17 E-value=0.091 Score=41.75 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhch
Q 032820 60 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW-AKVAEETSGY 128 (133)
Q Consensus 60 I~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~W-e~~~~~~~~~ 128 (133)
..+++..+..++..|...+-....-|...+..+..++-..|..|+..|..|+.++.+.| +.+.|.+..+
T Consensus 160 ~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l 229 (385)
T 2q13_A 160 KYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANI 229 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999998888889999999999999999999999999999999999 4888866554
No 11
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=95.50 E-value=0.56 Score=35.40 Aligned_cols=78 Identities=9% Similarity=0.182 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKE---------------NNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~---------------~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
.+++++..........++.|+.+|..... .+...++.++.+|..-|+.+|..|+.........+.
T Consensus 172 ~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~~~~~ 251 (305)
T 2efl_A 172 ADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIG 251 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666666666667777766655433 334467789999999999999999998776665555
Q ss_pred HHHHHHHHHHhch
Q 032820 116 NVWAKVAEETSGY 128 (133)
Q Consensus 116 ~~We~~~~~~~~~ 128 (133)
..=+.+...+..|
T Consensus 252 ~~~~~l~~~~~~i 264 (305)
T 2efl_A 252 KCLDGIVKAAESI 264 (305)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555544
No 12
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=95.49 E-value=0.57 Score=35.40 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI---------------KENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i---------------~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
..++++...+......++.|+.+|... -..+...++.++.+|..-|+.+|..|+...........
T Consensus 165 ~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~~~ 244 (301)
T 2efk_A 165 ADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIA 244 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345566666666666666776665432 22344557778889999999999999997776666555
Q ss_pred HHHHHHHHHHhch
Q 032820 116 NVWAKVAEETSGY 128 (133)
Q Consensus 116 ~~We~~~~~~~~~ 128 (133)
..-+.+...+.+|
T Consensus 245 ~~~~~l~~~~~~i 257 (301)
T 2efk_A 245 KCLEGMKVAANAV 257 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5555565555544
No 13
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=93.62 E-value=1.6 Score=32.39 Aligned_cols=78 Identities=8% Similarity=0.144 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
.|+.++..+....-...+..+..|+.--..+...++.++.+|..-|+.+|..|+...-......-..-+.+...+.+|
T Consensus 170 ~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 247 (276)
T 2v0o_A 170 VKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANT 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhC
Confidence 556666667666777777788888777778888889999999999999999999776655555555555555554444
No 14
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=92.30 E-value=3.5 Score=32.71 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA-KVAEETS 126 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We-~~~~~~~ 126 (133)
.+....+..++..|...+-....-|..++..+..+|-..+..|+..|..++..+.+.|. .+-|-+.
T Consensus 184 ~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~ 250 (407)
T 4h8s_A 184 TEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLS 250 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888999999999999999999999999999999884 3545443
No 15
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=90.01 E-value=5.6 Score=30.85 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIK--------------ENNRTELERLDKERRADFLNMLKGFVVNQVGYA--EKI 114 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~--------------~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~--~~~ 114 (133)
..+++++..+..+...+..|..+|.... ..+..-++.++.+|..-|+++|..|+.. +... ..+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-l~~~~~~~~ 270 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGY 270 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhH
Confidence 5556666666666666666666654433 3445567788889999999999999887 3322 233
Q ss_pred HHHHHHHHHHHhch
Q 032820 115 ANVWAKVAEETSGY 128 (133)
Q Consensus 115 ~~~We~~~~~~~~~ 128 (133)
-..=+.+...+..|
T Consensus 271 ~~~~~~l~~~i~~i 284 (350)
T 3aco_A 271 KAIYHDLEQSIRAA 284 (350)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444433
No 16
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=89.99 E-value=5.3 Score=31.94 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKEN---------------NRTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~---------------~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
..++++..........+..|+.+|-..... +..-++.++.+|..-|+++|..|+..--.......
T Consensus 164 ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~~~~~~~~~~~~~ 243 (406)
T 4dyl_A 164 KDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVV 243 (406)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445666677777777777777777533322 23446678888999999999998876543333333
Q ss_pred HHHHHHHHHHhc
Q 032820 116 NVWAKVAEETSG 127 (133)
Q Consensus 116 ~~We~~~~~~~~ 127 (133)
..=+.+...+.+
T Consensus 244 ~~~~~l~~~i~~ 255 (406)
T 4dyl_A 244 AIHREMAAAAAR 255 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 17
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=89.71 E-value=7.3 Score=31.80 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI--------------KENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i--------------~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
..+++++..+..+...++.|+.+|... -..+..-++.++.+|..-||++|..|+...
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l 255 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666444 445567788899999999999999998664
No 18
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=89.33 E-value=6.1 Score=30.32 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYER--------------IKENNRTELERLDKERRADFLNMLKGFVVN 106 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~--------------i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~ 106 (133)
..++++...+..+...+..|+.+|.. --..+...++.++.+|..-|+++|..|+..
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655543 334455566778888999999999999875
No 19
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=89.12 E-value=2.9 Score=31.09 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 103 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~f 103 (133)
..++..|+.++.++..+.-.++.+|+++.+++.+|.+.....=...|-.-|+.-
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpV 118 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPV 118 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467888999999999999999999999999999999987766555544444433
No 20
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=88.65 E-value=6.2 Score=29.53 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 7 AFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELE 86 (133)
Q Consensus 7 a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~ 86 (133)
++.|=--+...|+.|.=+...-+...+.+...+ + ++++ ..|+ +.....+..++..|+.+...+..=|+
T Consensus 100 aI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~-~--~~~~--l~rv-------e~~q~~~~~ak~kf~kLR~DV~~Kle 167 (224)
T 1i4d_A 100 TMEDTLMTVKQYEAARLEYDAYRTDLEELSLGP-R--DAGT--RGRL-------ESAQATFQAHRDKYEKLRGDVAIKLK 167 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhHhHHHHHhhHHHhhccc-c--cccc--hhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666555555554444443210 0 0111 1233 34788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 87 RLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 123 (133)
Q Consensus 87 RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~ 123 (133)
-++..|..+|...|.-|......|+..+.+.-+..++
T Consensus 168 LLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~ 204 (224)
T 1i4d_A 168 FLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQ 204 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999988888888777655553
No 21
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=85.30 E-value=8.3 Score=27.68 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 18 VQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 18 ~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
.......+..++.++..|... +.+.+.+|..|-.+|.++..++...+.+|.
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a-------~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTA-------SSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777766642 234479999999999999998888776653
No 22
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=83.35 E-value=8.1 Score=25.89 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAASSKIFGG----DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~----~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
-.|..++..+...+.+++|+.+....+-.. ...--.+|..|...+...|..+...+..|..+...+..++.+.-..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665432111111 0112478889999999999999999999999999999999987665
Q ss_pred HHH
Q 032820 92 RRA 94 (133)
Q Consensus 92 k~~ 94 (133)
|..
T Consensus 86 Re~ 88 (112)
T 1x79_B 86 REQ 88 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.73 E-value=6.5 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
++...+..|..|.+++- .++..|..++.+|.+.+..+...+.++|.|
T Consensus 20 ti~eLq~~L~~K~eELr--------------~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELR--------------QRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777777666642 346778888888877777777666666654
No 24
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=81.70 E-value=10 Score=26.96 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 90 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ 90 (133)
.-...|..++..+|.++..|+.-|+.........+..|=.
T Consensus 103 ~~f~~Lq~eL~~~EnrIa~ARr~YN~aV~~yN~~i~~FP~ 142 (171)
T 2etd_A 103 ANFRQLMDELAGTENRIAVARRDYNEAVXXYNTAIXXFPG 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 5567899999999999999999999999998888877744
No 25
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=81.65 E-value=15 Score=27.70 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
..-+.+..|+-.|..+.++...-.++--.+| ...|+..|++|+..+|...-.+...+.+++....+|--..
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~ 168 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSY 168 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 3344455555555555555322111110112 2378999999999999988888888888887665554443
No 26
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=79.40 E-value=6.9 Score=22.52 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRT 83 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~ 83 (133)
...+.+|+.+|..+|..+...+..|..+++.+..
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4778899999999999999999999888887654
No 27
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=79.18 E-value=18 Score=27.24 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhch
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA--EKIANVWAKVAEETSGY 128 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~--~~~~~~We~~~~~~~~~ 128 (133)
.++..++.+....-...+..+..|+.--..+..-++.++.+|..-|+++|..|+.. +... ..+-..=+.+...+..|
T Consensus 206 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-~~~~~~~~~~~~~~~l~~~i~~i 284 (312)
T 3abh_A 206 QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGYKAIYHDLEQSIRAA 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGGSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHhC
Confidence 44555566655555666666667766666667778889999999999999999887 3332 23333344444444433
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.08 E-value=9.1 Score=23.72 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 11 RSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIK 78 (133)
Q Consensus 11 R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~ 78 (133)
=..+.-.+..+...|........+++..- .+-..|+..++.++..++..+..+...++...
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev-------~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDEL-------VALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555555544210 12357777777777777777777777666544
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.53 E-value=13 Score=25.12 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
..++.+|+.+|..+...+..+..+.+.....
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888887776655443
No 30
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=76.15 E-value=8.8 Score=27.97 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTE----DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 102 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e----~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~ 102 (133)
..++..|+.++.++. .+.-.++.+|+++.++..+|.+.....-...|-.-|+.
T Consensus 41 ~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLp 97 (197)
T 1dkg_A 41 DEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLP 97 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887 48899999999999999999988776554444444443
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.05 E-value=14 Score=23.88 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 10 DRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIK 78 (133)
Q Consensus 10 ~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~ 78 (133)
+-.++.-.+..++..+........+++.-- .+-..|+..++.++..++..+..++..++...
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei-------~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDI-------VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444210 12246666666666666666666666665543
No 32
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=74.85 E-value=12 Score=22.75 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 63 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 63 ~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
+-..+..-+..|+.+...++.|++.|-..|..++...........
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l 51 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDAL 51 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345567788999999999999999999999999888777665543
No 33
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.47 E-value=13 Score=23.25 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 2 LAVRSAFTDRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSR-IRKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 2 ~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r-~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
+||-+-+..|.+ -.+.+++++|+..+...+.|.... ++ .+-+..|+.+-.+++..++..+...+.+..
T Consensus 6 SAVeDKLRrrl~--E~~~q~qaEl~sLrrT~~EL~~G~--------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 6 SAVSDKLRWRMK--EEMDRAQAELNALKRTEEDLKKGH--------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565655544 456788899999999999998643 22 577888888888888888888777666543
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.52 E-value=30 Score=25.68 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032820 18 VQTLLSELSSLQMRAEKLE 36 (133)
Q Consensus 18 ~q~a~~~L~~kr~~~~kl~ 36 (133)
......++...+..+.+..
T Consensus 62 ~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.75 E-value=26 Score=27.95 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
.||.+++.+|.+++..++.++.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555443
No 36
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=66.74 E-value=38 Score=25.40 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
..+++++..+..+...+..|..+|.........--.+|+ .+|..++..|=.+.......+-+....+...+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~----~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~~ 262 (312)
T 3abh_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM----ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 262 (312)
T ss_dssp HHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888899999999999888887777666674 36777777666666555555544443444433
No 37
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=66.44 E-value=17 Score=24.75 Aligned_cols=40 Identities=35% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 21 LLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 21 a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~ 71 (133)
++++|..+.+.+++|.-. ..|+..|+..|..++..+..+.
T Consensus 49 ~qsele~k~aeLe~leeL-----------~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLEEL-----------SDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888887643 4777888888877777777544
No 38
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=65.36 E-value=17 Score=20.91 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..|+.+|..+|..+...+..|+.+-.+..+|+
T Consensus 17 ~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 17 NAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888888888888888888888887777765
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.10 E-value=1.3e+02 Score=30.88 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 032820 111 AEKIANVWAKVAEE 124 (133)
Q Consensus 111 ~~~~~~~We~~~~~ 124 (133)
=+.+++.|...+..
T Consensus 2125 R~~l~~~W~~~l~~ 2138 (3245)
T 3vkg_A 2125 RTDLMRKWMIRLDS 2138 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35677889877643
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=62.20 E-value=28 Score=22.30 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 10 DRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 10 ~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
+-.++.-.+..++..+........++..-- .+-..|+..++.++..++..+..++..++..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei-------~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQ-------QGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444443210 0113455555555555555555555444433
No 41
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=60.82 E-value=50 Score=24.76 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-CccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGG-DKSR-IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~-~~~r-~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
....|-.+.++|.+.....-|++.-+ -|| +++. +++.. +.-..|..-+.+++.+.....++.--=++.
T Consensus 126 ~~~e~k~~~~~l~K~~~e~~kl~KK~---k~gk~~~~~~~~~~-------~~~e~v~~~~~~le~~~~~~lr~aL~EERr 195 (253)
T 2ykt_A 126 YQTEQRSKGDALDKCQAELKKLRKKS---QGSKNPQKYSDKEL-------QYIDAISNKQGELENYVSDGYKTALTEERR 195 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhc---cCCCCcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667777766666665321 122 1111 23332 233446666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 92 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 92 k~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
|-.-|-..+..|+...+.++.+....-...+|.....
T Consensus 196 Rycflv~~~~~v~~~~~~~h~~~~~~L~~~l~~w~~l 232 (253)
T 2ykt_A 196 RFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQA 232 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888888888888888877655544444444443
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=59.29 E-value=19 Score=20.64 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
..=++.|..++.++..+++....+.+....++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888887776654
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.72 E-value=42 Score=22.57 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKEN 80 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~ 80 (133)
..|..|...+.++...|+..+.+....+-+
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 445555555555555555555555544433
No 44
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=50.31 E-value=54 Score=21.94 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 59 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 103 (133)
Q Consensus 59 eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~f 103 (133)
||.+++..++.+.+...++.+.. ..|..+|+.++-.+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF--------~~ks~eFReav~~L 41 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVF--------QTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 44444444444555544444444 44555555555443
No 45
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=49.30 E-value=47 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
+.|..-..+|..++.+++..+.....+..
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666667777777777766666655543
No 46
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.16 E-value=59 Score=21.70 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=52.8
Q ss_pred cCCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 032820 43 FGGDKSR-IRKIEELKETIRVTEDAKSVAINEYERIK---ENNRTELERLDKER-RADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 43 ~g~~~~r-~~K~~~l~~eI~~~e~~v~~a~~~~e~i~---~~~~~E~~RF~~ek-~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
++.|.+. .+||..+...+.++-+.....=+++..+. .....--.++..+| ..||..+|..|=..|-.+.++.-
T Consensus 42 T~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek 119 (130)
T 2dnx_A 42 TKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEK 119 (130)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445433 68999999998888888877777777652 11112245666777 88999999999999999887654
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.14 E-value=45 Score=20.41 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIK---ENNRTELERLDK 90 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~---~~~~~E~~RF~~ 90 (133)
.|+..++..=.+++.+|..++..++.-. ...+.|+.+|..
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333 334455555543
No 48
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=46.35 E-value=2.9 Score=30.13 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
.++..++.++.++..+.-.++.+|+++.++..+|.+.....-...|-.-|+.-++
T Consensus 26 ~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlD 80 (177)
T 3a6m_A 26 ERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLD 80 (177)
T ss_dssp TSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888889999999999999999999999988877666666555555443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.18 E-value=1.2e+02 Score=24.64 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 53 IEELKETIRVTEDAKSVAINEY 74 (133)
Q Consensus 53 ~~~l~~eI~~~e~~v~~a~~~~ 74 (133)
...++.++.+++...+..++..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHH
Confidence 3333344444444444444443
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.04 E-value=52 Score=20.49 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIK---ENNRTELERLDK 90 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~---~~~~~E~~RF~~ 90 (133)
.|+..++..=.+++.+|..++..++.-. ...+.|+.+|..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555443 344566666654
No 51
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=45.01 E-value=19 Score=20.00 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 032820 94 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 128 (133)
Q Consensus 94 ~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~ 128 (133)
-||-+.|..|+..-.+-.+.++...+.++.+...+
T Consensus 7 ld~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 7 LDYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 37788899999999999999999999999887644
No 52
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.28 E-value=39 Score=18.56 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
-.|+..+..||...+.++...+.....+.+..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888888888888888888888777666543
No 53
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.13 E-value=32 Score=17.48 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 56 LKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 56 l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
|+.++..+..-|+..++..|.+.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 54
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.91 E-value=81 Score=21.85 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 12 SSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 12 ~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
.+++..++++-+.-...|.+++.|-... . +.+--.++. =..+...+...++.|-..++.++.+...|++. +.
T Consensus 28 ik~L~~le~sassDa~vrq~Ia~LP~eV---s--d~s~l~klk-Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~~d--R~ 99 (152)
T 4fla_A 28 IKALQDLENAASGDATVRQKIASLPQEV---Q--DVSLLEKIT-DKEAAERLSKTVDEACLLLAEYNGRLAAELED--RR 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGG---T--CGGGGGGCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHhhccccchHHHHHHHHcCCccc---c--CHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 5678888888777777778887764211 0 110001111 02456677788888899999999999999874 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032820 92 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 126 (133)
Q Consensus 92 k~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~ 126 (133)
....|-..+..|-..++.-.+..++....++..+.
T Consensus 100 ~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 100 QLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556666666666655544
No 55
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=42.41 E-value=11 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 032820 82 RTELERLDKERR 93 (133)
Q Consensus 82 ~~E~~RF~~ek~ 93 (133)
++|+.+|+.+|.
T Consensus 11 rREyakFe~Er~ 22 (52)
T 3g9w_C 11 RREFAKFEKEKM 22 (52)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 689999999875
No 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.95 E-value=2e+02 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
..++..|+.+|.+++..++.+.++++...+.+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777766666655443
No 57
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=41.05 E-value=78 Score=21.08 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=27.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 63 TEDAKSVAIN----EYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 63 ~e~~v~~a~~----~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
+...|..|+. .+....+.+..||+-|..+|..+|+........
T Consensus 22 A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g 68 (119)
T 4efa_G 22 AHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAG 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444543 366677777888888888888888876655443
No 58
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=40.74 E-value=47 Score=18.53 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 89 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~ 89 (133)
++|++.|+..++-++.+....-.+|+.....++.=|...+
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887777777777777765554443
No 59
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=40.12 E-value=1.1e+02 Score=22.51 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 107 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~q 107 (133)
.++...+.+....-......+..|+.--..+...++.++.+|..-|+.+|..|+...
T Consensus 184 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~ 240 (290)
T 3i2w_A 184 DQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777778888888888888999999999999999999999653
No 60
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=39.08 E-value=1.1e+02 Score=22.19 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 13 ~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
.+...+..++..|...+..+++.+.. +.....-...+..++.++..++..++.++.+++.
T Consensus 64 ~a~a~l~~a~a~l~~a~~~~~r~~~L----~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~ 123 (277)
T 2f1m_A 64 SAKGDLAKAQAAANIAQLTVNRYQKL----LGTQYISKQEYDQALADAQQANAAVTAAKAAVET 123 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT----TTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666655532 3222212456666777777777777766666553
No 61
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=36.85 E-value=87 Score=20.41 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 60 IRVTEDAKSVAINEYERIKENNRTELERLDK 90 (133)
Q Consensus 60 I~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ 90 (133)
+++...++-.|+.-++.+...+++=+.||.+
T Consensus 59 lD~vD~~Il~Ak~aL~evt~~l~Er~~RW~q 89 (101)
T 3teq_A 59 LDDVDHKILTAKQALSEATAALRERLHRWQQ 89 (101)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777888888888888888888865
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.71 E-value=2.4e+02 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
++++.++.++..+....+..+..
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333
No 63
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.37 E-value=24 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRA 94 (133)
Q Consensus 82 ~~E~~RF~~ek~~ 94 (133)
++|+.||++++..
T Consensus 41 rrE~~kFEkE~~~ 53 (79)
T 2knc_B 41 RKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999988874
No 64
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=36.17 E-value=1.1e+02 Score=21.40 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQV 108 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi 108 (133)
.++..++.++.+.+..+ ..+.+.|.+....++... ..+...|...|..|++.+.
T Consensus 23 r~ia~l~r~~~~i~~~~---n~eI~~ik~~~~~~~~~l-~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQM---NEAIDAAKARASQKSAPL-LARRKELEDGVATFATLNK 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhH
Confidence 45555555555554443 455566666666666666 4555667777777776663
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.07 E-value=94 Score=20.57 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
...++..|+..|..|....++|..- ..+....-..|+-++.+++.-+.+|.
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~e-----------i~q~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEE-----------AEQHKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888741 23333334567777888877777774
No 66
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.62 E-value=78 Score=19.56 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch--hcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 16 LTVQTLLSELSSLQMRAEKLEAAS--SKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 16 ~~~q~a~~~L~~kr~~~~kl~~~~--sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
..|......+.....+++.|.... +-+|..+ ..++..+..++..++..++.+-...+.+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d---~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQP---HEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777665432 1122322 4788888888888888887777666544
No 67
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.33 E-value=85 Score=19.55 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNR 82 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~ 82 (133)
..++..|+.+|..+...++...-+.+.+.++-+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888888877654
No 68
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=34.22 E-value=22 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 032820 82 RTELERLDKERR 93 (133)
Q Consensus 82 ~~E~~RF~~ek~ 93 (133)
++|+.||+++|.
T Consensus 29 rrEyakFE~Er~ 40 (67)
T 1s4x_A 29 RKEFAKFEEERA 40 (67)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 789999999986
No 69
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.68 E-value=90 Score=24.87 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 84 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E 84 (133)
..++..|+.++.+++..++.++.++..+.+....|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888888888888877777666554
No 70
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.31 E-value=1.9e+02 Score=23.35 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 14 ALLTVQTL-LSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 92 (133)
Q Consensus 14 ~~~~~q~a-~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek 92 (133)
.|.+|+.- ..+|+.....++.+...++ +-.+.|..++......+..+.....-+...++.|++|+.+++ .
T Consensus 28 ~L~kye~~V~~~l~~L~~~l~~isn~Ts-------~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~--~ 98 (411)
T 3ghg_C 28 FLSTYQTKVDKDLQSLEDILHQVENKTS-------EVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYE--A 98 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccchhhHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHH--H
Confidence 44555543 3444544444444433210 012333333333333333333333445666667777777773 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032820 93 RADFLNMLKGFVVNQVGYAEKIA 115 (133)
Q Consensus 93 ~~d~k~~l~~fa~~qi~~~~~~~ 115 (133)
...-...-+..++.++......+
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i 121 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIYNSNNQKI 121 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 23223333344444444443333
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.57 E-value=1.5e+02 Score=21.70 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYER 76 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~ 76 (133)
..+..++.+|.+...++...+...+.
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444433
No 72
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=31.39 E-value=37 Score=18.88 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 032820 94 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 129 (133)
Q Consensus 94 ~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~~~~~ 129 (133)
.++-+-+..++..+++.-+...++|....+++.+|.
T Consensus 6 Qs~LD~vG~qiVrkmKtGe~FfKiWS~~~e~I~sYV 41 (45)
T 3l32_A 6 QSYLDNVGVQIVRQMRSGERFLKIWSQTVEEIVSYV 41 (45)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 355666777788888888889999999999988873
No 73
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.20 E-value=60 Score=16.84 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~ 71 (133)
++|++.|-.+..+++..|...+
T Consensus 6 EdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3666666666666666665544
No 74
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.02 E-value=1e+02 Score=19.58 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 17 TVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEY 74 (133)
Q Consensus 17 ~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~ 74 (133)
.|....++|..+-.++ .. +.| + .|...|..++..|.+++.-+++-.-+.
T Consensus 13 df~~l~~~i~~kl~~i---~~----~~g-e-erk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 13 DFAVLTAEITSKIARV---PR----LPP-D-EKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp HHHHHHHHHHHHHHHG---GG----SCT-T-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hc----cCc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544432 22 122 2 356778888888877777776655443
No 75
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=30.86 E-value=1.8e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
+++..+++.|...|...+......-.-|
T Consensus 180 Eea~~K~eeAd~~Y~~~V~~a~~~r~eL 207 (279)
T 3qwe_A 180 EEAQAKAQEAEALYQACVREANARQQDL 207 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777776665444333333
No 76
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.61 E-value=77 Score=17.93 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHH
Q 032820 10 DRSSALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTE 64 (133)
Q Consensus 10 ~R~~~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e 64 (133)
.|..++..+...+-...-.+.++ ..+|+.+++.++.++.
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEql----------------Y~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKL----------------FRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 45555555555554444333333 4689999998887764
No 77
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=30.48 E-value=89 Score=18.60 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 1 MLAVRSAFTDRSSALLTVQTLLSELSSLQMRA 32 (133)
Q Consensus 1 ~~avk~a~~~R~~~~~~~q~a~~~L~~kr~~~ 32 (133)
|+-+++++.+|+..-.++--.+++|+.-+...
T Consensus 2 ~~Elr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 2 REEFEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46689999999999999999999998776554
No 78
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.03 E-value=99 Score=19.00 Aligned_cols=39 Identities=13% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
.+|++.|+..+..++.+....-.+|+.....++.=|...
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~L 44 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKV 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777766666665444443
No 79
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.15 E-value=11 Score=23.71 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 67 KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKI 114 (133)
Q Consensus 67 v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~ 114 (133)
-+.|+...+.+-+.++.|++ ..|-++|+..|-..+-++|+..
T Consensus 24 pdearerieklakdvkdele------egdaknmiekfrdemeqmykda 65 (101)
T 2lse_A 24 PDEARERIEKLAKDVKDELE------EGDAKNMIEKFRDEMEQMYKDA 65 (101)
Confidence 34444455555555555554 3566777777777777776653
No 80
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=29.68 E-value=23 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRA 94 (133)
Q Consensus 82 ~~E~~RF~~ek~~ 94 (133)
++|+.||+.+|..
T Consensus 37 rREyaKFEkEr~~ 49 (75)
T 2kv9_B 37 RKEFAKFEEERAR 49 (75)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999874
No 81
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=28.91 E-value=22 Score=19.77 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 032820 82 RTELERLDKERRA 94 (133)
Q Consensus 82 ~~E~~RF~~ek~~ 94 (133)
++|+.+|+.++..
T Consensus 9 rrEyakFe~e~~~ 21 (47)
T 1m8o_B 9 RKEFAKFEEERAR 21 (47)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5799999998863
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.54 E-value=2.5e+02 Score=23.13 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.++..|..+|.+++..+.....+++.+
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777666666666543
No 83
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.53 E-value=1.2e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 66 AKSVAINEYERIKENNRTELERLDKER 92 (133)
Q Consensus 66 ~v~~a~~~~e~i~~~~~~E~~RF~~ek 92 (133)
+++.|..-.+.+...+..++..|..++
T Consensus 85 ~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 85 GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 456677777777778888888887664
No 84
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.50 E-value=2.5e+02 Score=23.12 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=63.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 13 SALLTVQTL-LSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 13 ~~~~~~q~a-~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
..|.+||.- ..+|+..+..++.+...++ +-.+.|..|+......+..+... +.+-.=+..+++|+.+|.++
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~Ts-------~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~~~ 155 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTSS-------SSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYIDE 155 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHHHh
Confidence 456666655 5566666666666654320 11466666666666666555554 44444456788889999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 92 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 125 (133)
Q Consensus 92 k~~d~k~~l~~fa~~qi~~~~~~~~~We~~~~~~ 125 (133)
-...-...=+.++...+.....-++.=+.....+
T Consensus 156 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 156 TVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776666666666666666655555555444433
No 85
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.33 E-value=1.3e+02 Score=19.95 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 83 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~ 83 (133)
..+..|+.+|..++.+....++-|..=+..+++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999887777665
No 86
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.16 E-value=2.6e+02 Score=23.24 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 55 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA 119 (133)
Q Consensus 55 ~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~~~~~We 119 (133)
.++.+-....++-..++..|+.-.+.-..+++-|+.+ ..|...-|..|=..+.++.+ .+..|+
T Consensus 45 ~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~-~AeY~~kl~aYe~~~~~~~k-~lae~e 107 (497)
T 3iox_A 45 ALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD-LADYPVKLKAYEDEQTSIKA-ALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 3444677777777788888888777777777777766 55555566666555555444 333443
No 87
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=27.38 E-value=2e+02 Score=21.60 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIK 78 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~ 78 (133)
+...+..+++.|...+..+++.... +.....-...+..++.++..++..++.++..++...
T Consensus 96 a~~~l~~a~a~l~~a~~~~~r~~~L----~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~ 156 (359)
T 3lnn_A 96 ANSDAAKARAAMTMARRNLDRQREL----DKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLG 156 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----TSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777777777777666543 222111134566666667777777777766665443
No 88
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=26.31 E-value=2.1e+02 Score=21.57 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 105 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~ 105 (133)
...+...+.+....-......+..|..--..+..-++.++.+|..-|+++|..|+.
T Consensus 196 ~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 196 TKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777778888888777788888999999999999999999996
No 89
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.21 E-value=2.6e+02 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 51 RKIEELKETIRVTEDAKSVAINEYERI 77 (133)
Q Consensus 51 ~K~~~l~~eI~~~e~~v~~a~~~~e~i 77 (133)
.++..+..+|.+++..+.....+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777776666666665543
No 90
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=26.08 E-value=65 Score=22.05 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 56 LKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 56 l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
.+.++.+++=+++.|+..++.++..-..||..|
T Consensus 2 ae~dL~~A~PaL~~A~~al~~l~k~di~Eiks~ 34 (155)
T 2rr7_A 2 SQADLAEALPLLEAALKALDTLKPADITEVKGM 34 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcc
Confidence 467888999999999999999999999998877
No 91
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.92 E-value=2.2e+02 Score=21.61 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 88 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF 88 (133)
+..+.+..++.+|.+++..++....+...+.+.....+..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~ 263 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIAL 263 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999988888888888776666655
No 92
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=25.88 E-value=66 Score=15.62 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032820 111 AEKIANVWAKVAEET 125 (133)
Q Consensus 111 ~~~~~~~We~~~~~~ 125 (133)
+-.++-+|.+|.++-
T Consensus 11 qlemitawkkfveek 25 (28)
T 1nwd_B 11 QLEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456888999988764
No 93
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.34 E-value=20 Score=19.05 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
..||..|+.+...++..+..++.+
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777666543
No 94
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.74 E-value=1.7e+02 Score=20.01 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 032820 49 RIRKIEELKETIRVTEDAKSVAINEYERIKEN---NRTELERL 88 (133)
Q Consensus 49 r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~---~~~E~~RF 88 (133)
..+|+..|+.++.++....+.|-..|+.+... +-.+++|-
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLera 92 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999998773 44555544
No 95
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.14 E-value=1.5e+02 Score=19.13 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAI 71 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~ 71 (133)
..++..|+.+|..+...+..+.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988888876
No 96
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.97 E-value=1.5e+02 Score=19.03 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 14 ALLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 14 ~~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e 75 (133)
...++..|+..|.+|...+++|... ..+....-..|+-++..++.-+.+|.
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~-----------~~q~~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEE-----------AEQHKIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888742 34444444677777777777777764
No 97
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=23.94 E-value=1.5e+02 Score=19.44 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 61 RVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 61 ~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
..+..+++.....++.+.+.+..++.+|...
T Consensus 76 eaL~~al~~L~~~~~~l~~~f~~a~~~~~~~ 106 (115)
T 1xpp_A 76 SAIKRAVRKLSKLYEDLGTQFQKEFQRYESD 106 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3466667777777777777777777777543
No 98
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.39 E-value=1.4e+02 Score=18.47 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 56 LKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 56 l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+.+|..+|.++..++.++..+.+.+
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777777777777777666554
No 99
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.26 E-value=52 Score=19.03 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 49 RIRKIEELKETIRVTEDAKSVA 70 (133)
Q Consensus 49 r~~K~~~l~~eI~~~e~~v~~a 70 (133)
...++..|+..|..++..+...
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999998888877654
No 100
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.07 E-value=1.5e+02 Score=18.65 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 032820 6 SAFTDRSSALLT 17 (133)
Q Consensus 6 ~a~~~R~~~~~~ 17 (133)
.+|+.|..|.-.
T Consensus 20 gaFgKrEaA~Ee 31 (84)
T 1gmj_A 20 GAFGKREQAEEE 31 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCcccHHHHhHH
Confidence 356666555443
No 101
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.86 E-value=2.1e+02 Score=20.38 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENN 81 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~ 81 (133)
.+.+..|+.+|..+|..+...+.+|..+.+.+
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888777776654
No 102
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.51 E-value=1e+02 Score=16.24 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
.+|++.|-.+..+++..|...+.-
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 366666666666666666555543
No 103
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.84 E-value=85 Score=15.08 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032820 54 EELKETIRVTEDAKSVAINEYE 75 (133)
Q Consensus 54 ~~l~~eI~~~e~~v~~a~~~~e 75 (133)
.+|..++-++...|.+.+++..
T Consensus 3 yqlkdevgelkgevralkdevk 24 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHh
Confidence 4566667666666666655543
No 104
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.82 E-value=2e+02 Score=19.29 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRT 83 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~ 83 (133)
.+|+..++..+..++..+...+..+..+...+.+
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555544
No 105
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=20.76 E-value=2.8e+02 Score=21.06 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 15 LLTVQTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINE 73 (133)
Q Consensus 15 ~~~~q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~ 73 (133)
...+..+++.|...+.++++.+..... |..+ ...+..++.++..++..++.++..
T Consensus 80 ~~~l~~a~a~l~~a~~~~~R~~~L~~~--g~is--~~~~~~a~~~~~~a~a~l~~a~~~ 134 (369)
T 1vf7_A 80 EADYQSAQANLASTQEQAQRYKLLVAD--QAVS--KQQYADANAAYLQSKAAVEQARIN 134 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--TSSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666555432100 1111 344555555555555444444433
No 106
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=20.69 E-value=2.5e+02 Score=20.49 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 48 SRIRKIEELKETIRV---TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEK 113 (133)
Q Consensus 48 ~r~~K~~~l~~eI~~---~e~~v~~a~~~~e~i~~~~~~E~~RF~~ek~~d~k~~l~~fa~~qi~~~~~ 113 (133)
.|+..++.++..|+. ....++.-+.-|+...+++.=+++-|..++...+..-++.=++.|+.+...
T Consensus 96 ~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~ 164 (214)
T 2cly_A 96 VKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNM 164 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666654 344555566668888999999999999999999988888888888776543
No 107
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.19 E-value=2.1e+02 Score=19.31 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 19 QTLLSELSSLQMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKE 79 (133)
Q Consensus 19 q~a~~~L~~kr~~~~kl~~~~sr~~g~~~~r~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~ 79 (133)
-+..++|-..+...+.|+..- ......+..|..++..+..+.+.+.++++...+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l-------~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDI-------ENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665311 012344445555555555555555554444433
No 108
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.19 E-value=2.5e+02 Score=20.18 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 50 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 91 (133)
Q Consensus 50 ~~K~~~l~~eI~~~e~~v~~a~~~~e~i~~~~~~E~~RF~~e 91 (133)
..++..|..++..|..+...++.+...-...+..|+..+...
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666655555555555556666555433
No 109
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.04 E-value=67 Score=21.80 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032820 96 FLNMLKGFVVNQVGYAEKIANVWAKVAEE 124 (133)
Q Consensus 96 ~k~~l~~fa~~qi~~~~~~~~~We~~~~~ 124 (133)
--..|..++..++++++.++++|+..+..
T Consensus 26 ~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k 54 (144)
T 1sz9_A 26 IITTLTKLAEENISCAQYFVDAIESRIEK 54 (144)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34568889999999999999999988754
Done!