Query 032821
Match_columns 133
No_of_seqs 138 out of 1031
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbq_A Protein TA0487; structu 99.6 6.4E-16 2.2E-20 112.3 3.6 47 1-50 118-169 (172)
2 3iwt_A 178AA long hypothetical 96.0 0.0025 8.6E-08 45.3 2.0 24 26-51 146-171 (178)
3 1uuy_A CNX1, molybdopterin bio 94.6 0.0059 2E-07 43.1 -0.1 43 5-51 110-157 (167)
4 2pbq_A Molybdenum cofactor bio 93.5 0.061 2.1E-06 38.3 3.6 34 14-51 118-157 (178)
5 1y5e_A Molybdenum cofactor bio 92.7 0.093 3.2E-06 36.9 3.4 35 14-51 124-161 (169)
6 2is8_A Molybdopterin biosynthe 92.5 0.073 2.5E-06 37.3 2.6 33 16-51 114-148 (164)
7 2g2c_A Putative molybdenum cof 89.4 0.13 4.6E-06 36.0 1.5 24 26-51 135-159 (167)
8 1mkz_A Molybdenum cofactor bio 87.9 0.26 8.9E-06 34.8 2.2 25 26-52 132-158 (172)
9 1jlj_A Gephyrin; globular alph 84.3 0.38 1.3E-05 34.5 1.5 24 26-51 140-164 (189)
10 1wjw_A Phosphoacetylglucosamin 83.7 6.9 0.00024 25.4 7.6 52 74-125 43-94 (112)
11 4hhu_A OR280; engineered prote 83.6 8.1 0.00028 26.1 8.3 59 63-122 43-106 (170)
12 1qys_A TOP7; alpha-beta, novel 80.3 4 0.00014 25.5 4.9 56 67-130 22-77 (106)
13 1rwu_A Hypothetical UPF0250 pr 77.4 7.3 0.00025 25.5 5.9 60 63-122 37-101 (109)
14 2pa8_L DNA-directed RNA polyme 73.2 11 0.00038 23.7 5.8 54 72-125 22-81 (92)
15 2ctf_A Vigilin; K homology typ 68.4 15 0.00051 23.4 5.7 43 77-124 48-90 (102)
16 2ctj_A Vigilin; K homology typ 68.3 9.9 0.00034 24.0 4.7 48 76-125 37-84 (95)
17 1xpp_A TA1416, DNA-directed RN 64.9 23 0.0008 23.3 6.1 53 72-124 32-89 (115)
18 1twf_K B13.6, DNA-directed RNA 62.3 20 0.0007 23.7 5.5 53 72-124 40-98 (120)
19 2w7v_A General secretion pathw 57.8 26 0.0009 22.2 5.3 51 72-122 8-62 (95)
20 1di6_A MOGA, molybdenum cofact 56.2 2.9 9.9E-05 30.0 0.5 25 17-44 119-145 (195)
21 2jsx_A Protein NAPD; TAT, proo 56.1 32 0.0011 21.7 5.4 37 84-122 28-65 (95)
22 3rfq_A Pterin-4-alpha-carbinol 55.6 7.3 0.00025 27.7 2.5 24 26-51 152-176 (185)
23 2f7l_A 455AA long hypothetical 54.9 78 0.0027 25.1 10.0 36 90-125 418-453 (455)
24 3cim_A Carbon dioxide-concentr 47.3 43 0.0015 21.3 5.0 40 86-126 27-66 (99)
25 2a10_A CCMK4, carbon dioxide c 46.6 52 0.0018 21.9 5.5 39 86-125 29-67 (125)
26 3h0g_K DNA-directed RNA polyme 46.2 24 0.00083 23.5 3.8 53 72-124 39-97 (123)
27 2gjh_A Designed protein; oblig 45.8 32 0.0011 19.4 3.6 30 100-129 3-32 (62)
28 2dka_A Phosphoacetylglucosamin 45.5 57 0.0019 26.7 6.7 51 74-124 493-543 (544)
29 2fts_A Gephyrin; gephyrin, neu 44.6 12 0.00042 29.8 2.5 24 26-51 303-328 (419)
30 3pdk_A Phosphoglucosamine muta 43.9 84 0.0029 25.2 7.4 51 75-125 412-463 (469)
31 1p5d_X PMM, phosphomannomutase 42.8 1.2E+02 0.0043 23.9 9.0 35 91-125 419-453 (463)
32 3r2c_J Protein NUSE, 30S ribos 41.6 43 0.0015 20.6 4.2 27 99-125 4-30 (83)
33 1uz5_A MOEA protein, 402AA lon 40.0 16 0.00055 29.0 2.5 24 26-51 296-321 (402)
34 2a1b_A CCMK2, carbon dioxide c 40.0 77 0.0026 20.7 5.5 40 86-126 27-66 (116)
35 2jvf_A De novo protein M7; tet 39.6 63 0.0022 19.7 4.6 54 63-125 21-77 (96)
36 1wqa_A Phospho-sugar mutase; a 39.4 1.4E+02 0.0048 23.6 8.4 37 89-125 415-451 (455)
37 3dhx_A Methionine import ATP-b 39.3 41 0.0014 21.2 4.0 52 70-123 30-88 (106)
38 3ke2_A Uncharacterized protein 38.6 83 0.0029 20.7 5.8 57 67-125 43-103 (117)
39 3d3c_J 30S ribosomal protein S 38.1 53 0.0018 20.4 4.2 27 100-126 10-36 (87)
40 2ctk_A Vigilin; K homology typ 37.5 76 0.0026 20.0 5.7 59 63-124 17-82 (104)
41 2ewh_A Major carboxysome shell 37.0 79 0.0027 20.0 5.3 38 86-124 31-68 (98)
42 3le1_A Phosphotransferase syst 36.8 40 0.0014 20.7 3.5 25 100-124 60-85 (88)
43 2h9z_A Hypothetical protein HP 36.2 32 0.0011 21.2 3.0 58 63-122 16-78 (86)
44 1kkl_H Phosphocarrier protein 35.2 52 0.0018 20.8 4.0 14 100-113 72-85 (100)
45 1y51_A Phosphocarrier protein 35.0 55 0.0019 20.0 4.0 14 100-113 60-73 (88)
46 2wp4_A Molybdopterin-convertin 34.7 1E+02 0.0035 20.9 5.6 59 68-126 63-126 (147)
47 4hjh_A Phosphomannomutase; str 33.7 69 0.0024 25.7 5.4 34 91-124 438-471 (481)
48 3pzy_A MOG; ssgcid, seattle st 33.5 18 0.00063 24.8 1.7 23 26-50 128-151 (164)
49 1vig_A Vigilin; RNA-binding pr 33.4 72 0.0024 18.4 5.8 44 77-123 26-69 (71)
50 1sph_A Histidine-containing ph 33.3 64 0.0022 19.7 4.1 14 100-113 60-73 (88)
51 1wu2_A MOEA protein, molybdopt 33.1 22 0.00077 28.1 2.3 25 25-51 291-317 (396)
52 2hh2_A KH-type splicing regula 33.1 92 0.0031 19.6 6.6 50 76-127 27-80 (107)
53 1k1g_A SF1-BO isoform; splicin 32.7 1.1E+02 0.0037 20.3 7.4 27 100-126 73-99 (131)
54 2q5w_E Molybdopterin-convertin 32.5 1.2E+02 0.004 20.6 7.5 69 58-126 43-118 (149)
55 1g8l_A Molybdopterin biosynthe 32.2 24 0.00081 28.1 2.3 24 26-51 293-318 (411)
56 3uw2_A Phosphoglucomutase/phos 32.2 81 0.0028 25.5 5.5 34 92-125 442-475 (485)
57 3ced_A Methionine import ATP-b 31.3 35 0.0012 21.3 2.6 52 70-122 29-87 (98)
58 3n79_A PDUT; FES cluster, BMC 31.2 1.4E+02 0.0048 21.1 6.7 40 86-126 27-66 (192)
59 1ptf_A Histidine-containing ph 30.9 73 0.0025 19.4 4.1 14 100-113 60-73 (88)
60 3ccd_A Phosphocarrier protein 30.5 52 0.0018 20.0 3.3 13 100-112 60-72 (85)
61 3i3w_A Phosphoglucosamine muta 29.9 53 0.0018 26.1 4.0 53 74-126 387-440 (443)
62 2ctm_A Vigilin; K homology typ 29.7 1E+02 0.0034 19.0 4.9 44 78-124 39-83 (95)
63 3nwg_A Microcompartments prote 29.5 1.5E+02 0.005 20.8 6.3 40 86-126 27-66 (182)
64 2qsw_A Methionine import ATP-b 28.2 47 0.0016 20.6 2.8 51 70-122 32-89 (100)
65 1tig_A IF3-C, translation init 26.9 1.2E+02 0.0041 19.0 5.1 58 62-127 7-69 (94)
66 1i96_V Translation initiation 26.8 1.2E+02 0.004 18.8 5.6 56 63-126 3-63 (89)
67 1x4a_A Splicing factor, argini 26.7 1.1E+02 0.0038 18.4 6.6 56 63-120 23-81 (109)
68 1tuo_A Putative phosphomannomu 26.5 73 0.0025 25.4 4.3 36 90-125 428-463 (464)
69 3mwb_A Prephenate dehydratase; 26.5 1.5E+02 0.0051 22.7 5.9 54 69-123 255-309 (313)
70 2yqr_A KIAA0907 protein; struc 26.4 1.4E+02 0.0047 19.5 6.4 48 77-125 40-98 (119)
71 3j20_L 30S ribosomal protein S 26.0 1E+02 0.0036 19.5 4.2 27 100-126 3-29 (102)
72 3bn4_A Carbon dioxide-concentr 25.9 1.5E+02 0.005 19.6 5.6 40 86-126 27-66 (122)
73 2fc8_A NCL protein; structure 25.9 1.1E+02 0.0037 18.1 4.8 59 62-120 15-74 (102)
74 1ka5_A Phosphocarrier protein 25.8 83 0.0028 19.1 3.6 14 100-113 60-73 (88)
75 1pch_A Phosphocarrier protein; 25.8 89 0.0031 19.1 3.8 14 100-113 59-72 (88)
76 2axy_A Poly(RC)-binding protei 25.5 1E+02 0.0036 17.8 6.4 47 77-126 26-72 (73)
77 2hh3_A KH-type splicing regula 25.5 1.3E+02 0.0045 18.9 6.2 60 64-125 12-79 (106)
78 1fm0_E Molybdopterin convertin 25.2 1.2E+02 0.0041 20.6 4.6 58 68-125 57-119 (150)
79 2qrr_A Methionine import ATP-b 25.1 1.2E+02 0.0043 18.5 5.0 51 70-122 32-89 (101)
80 1ghh_A DINI, DNA-damage-induci 24.7 1.3E+02 0.0043 18.5 6.5 40 68-110 12-57 (81)
81 1ssz_A Pulmonary surfactant-as 24.5 12 0.00039 18.9 -0.5 12 1-13 12-23 (34)
82 4ap8_A Molybdopterin synthase 24.4 1.6E+02 0.0056 19.6 6.4 66 60-125 50-122 (135)
83 3ngk_A Propanediol utilization 23.8 1.5E+02 0.0051 18.9 5.6 35 86-121 36-70 (102)
84 3dtz_A Putative chlorite dismu 23.4 2.3E+02 0.0078 21.0 6.8 41 87-127 64-105 (244)
85 3lqv_A PRE-mRNA branch site pr 22.9 1.3E+02 0.0046 18.2 6.4 25 64-88 10-35 (115)
86 3na5_A Phosphoglucomutase; iso 22.4 1.4E+02 0.0049 24.5 5.4 35 91-125 529-564 (570)
87 1rlh_A Conserved hypothetical 22.3 2.1E+02 0.007 20.0 6.4 55 75-129 41-95 (173)
88 2pjk_A 178AA long hypothetical 22.1 46 0.0016 23.1 2.1 24 26-51 146-171 (178)
89 1wvq_A Hypothetical protein PA 22.0 2.1E+02 0.007 20.0 7.2 50 81-130 39-88 (167)
90 3ihs_A Phosphocarrier protein 22.0 82 0.0028 20.2 3.1 13 100-112 84-96 (106)
91 2dwf_A Pulmonary surfactant-as 21.6 15 0.00053 18.8 -0.4 12 1-13 12-23 (34)
92 3n89_A Defective in GERM LINE 21.1 1.4E+02 0.0047 23.6 4.8 46 78-126 210-261 (376)
93 1x4m_A FAR upstream element bi 21.1 1.5E+02 0.0051 18.0 5.2 58 67-126 19-86 (94)
94 2ekm_A Hypothetical protein ST 21.0 2.1E+02 0.0073 19.8 7.2 50 81-130 36-85 (162)
95 1vgg_A Conserved hypothetical 20.4 2.2E+02 0.0075 19.7 7.2 52 79-130 32-83 (161)
96 3s8s_A Histone-lysine N-methyl 20.2 1.6E+02 0.0056 18.1 6.8 58 63-120 7-68 (110)
97 3md1_A Nuclear and cytoplasmic 20.2 1.3E+02 0.0044 16.9 7.1 57 64-120 3-63 (83)
No 1
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.58 E-value=6.4e-16 Score=112.29 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=44.2
Q ss_pred CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHHHHHHHh
Q 032821 1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNCLIELLR 50 (133)
Q Consensus 1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~v~p~l~ 50 (133)
||++|+||+ +|+|++|+|||+|++ ++|+|||| |+ |++||+++.|.|.
T Consensus 118 ~A~~P~ga~-~l~N~~g~apG~~~~~~~~~v~~lPGv--P~e~~~m~~~~~~~~~ 169 (172)
T 3kbq_A 118 MAKIPPSCR-PIENPVGTAPGLICAVGGKKVIILPGV--PKEMEALLKAMEKDII 169 (172)
T ss_dssp GGEECTTEE-EECCSSSSSCEEEEEETTEEEEEECSS--HHHHHHHHHHTHHHHC
T ss_pred hccCCCCCE-ECcCCCCcCCeEEEEECCeEEEEeCCC--HHHHHHHHHHHHhhcC
Confidence 899999998 999999999999996 69999999 98 9999999999883
No 2
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0025 Score=45.30 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCc-hHHHHHH-HHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWNC-LIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~-v~p~l~~ 51 (133)
.+|+|||+ |. |+.||+. +.|.|..
T Consensus 146 ~i~~LPG~--P~~~~~~~~~~v~P~L~h 171 (178)
T 3iwt_A 146 IVYLLPGS--PDAVKLALKELILPEVGH 171 (178)
T ss_dssp EEEEECSC--HHHHHHHHHHTHHHHHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence 38999999 98 9999975 7898843
No 3
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=94.56 E-value=0.0059 Score=43.14 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCCCceeeeCCCC--cccEEEec--eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821 5 PEGTTELLHHDKL--LLPLIKCQ--NVIILTATNVTE-LDKEWNCLIELLRS 51 (133)
Q Consensus 5 Pega~~~l~N~~g--tAPg~~i~--~v~~LPGv~~P~-m~~m~~~v~p~l~~ 51 (133)
+.|.. +.+|..+ +++|+ ++ -+|.|||. |. ++.+|+.++|.|+.
T Consensus 110 ~~g~~-~~Pg~~~sr~~~G~-~~~~~v~~LPG~--P~s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 110 QESLK-ITPFAMLARSAAGI-RGSTLIINMPGN--PNAVAECMEALLPALKH 157 (167)
T ss_dssp HHHHH-HCGGGGGCCCCEEE-ETTEEEEEECSS--TTHHHHHHHHHHHHHHH
T ss_pred hcccc-cCCCCcccceeEEE-ECCEEEEECCCC--HHHHHHHHHHHHHHHHH
Confidence 34444 5555443 57787 34 39999999 98 88899876788754
No 4
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=93.55 E-value=0.061 Score=38.27 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=26.0
Q ss_pred CCCCcccEEEec--eEEEeeCCCCCc-hHHHHHHH---HHHHhh
Q 032821 14 HDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNCL---IELLRS 51 (133)
Q Consensus 14 N~~gtAPg~~i~--~v~~LPGv~~P~-m~~m~~~v---~p~l~~ 51 (133)
|+.|+| |+ .. .+|.|||. |. ++.||+.+ +|+|..
T Consensus 118 lsrg~a-g~-~~~~~v~~LPG~--P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 118 LSRQTA-GI-RGSCLIVNLPGK--PQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp GCCCCE-EE-ETTEEEEEECSS--HHHHHHHHHHHGGGHHHHHH
T ss_pred ccccee-ee-ECCEEEEECCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 356777 66 44 49999999 98 89999864 888855
No 5
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=92.70 E-value=0.093 Score=36.92 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.7
Q ss_pred CCCCcccEEEec-eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821 14 HDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLRS 51 (133)
Q Consensus 14 N~~gtAPg~~i~-~v~~LPGv~~P~-m~~m~~-~v~p~l~~ 51 (133)
+..++| |+.-+ .+|+|||. |. ++.||+ .+.|+|+.
T Consensus 124 ~~r~~a-G~~~~~~v~~LPG~--P~~~~~~~~~~v~p~L~~ 161 (169)
T 1y5e_A 124 LSRAIG-GTIGRKVVFSMPGS--SGAVRLAMNKLILPELGH 161 (169)
T ss_dssp GCCCEE-EEETTEEEEEECSS--HHHHHHHHHHTHHHHHHH
T ss_pred ccccee-EEECCEEEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence 455655 66322 49999999 98 899997 57888854
No 6
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=92.47 E-value=0.073 Score=37.30 Aligned_cols=33 Identities=6% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCcccEEEec-eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821 16 KLLLPLIKCQ-NVIILTATNVTE-LDKEWNCLIELLRS 51 (133)
Q Consensus 16 ~gtAPg~~i~-~v~~LPGv~~P~-m~~m~~~v~p~l~~ 51 (133)
.|+| |+.=+ .+|.|||. |. ++.||+.+.|.|+.
T Consensus 114 ~g~~-G~~~~~~v~~LPG~--P~~~~~~~~~v~p~l~~ 148 (164)
T 2is8_A 114 RGVA-GVRGRTLILNLPGS--PKGARESLEAVLPVLPH 148 (164)
T ss_dssp CCCE-EEETTEEEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred eeeE-EEECCeEEEECCCC--HHHHHHHHHHHHHHHHH
Confidence 3455 55322 49999999 98 88999878787743
No 7
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=89.38 E-value=0.13 Score=36.01 Aligned_cols=24 Identities=4% Similarity=0.346 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWNCLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~v~p~l~~ 51 (133)
.+|.|||. |. ++.||+.+.|.|+.
T Consensus 135 ~v~~LPG~--P~~~~~~~~~v~P~L~~ 159 (167)
T 2g2c_A 135 LIVNAPSS--SGGITDTWAVISPVIPN 159 (167)
T ss_dssp EEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHH
Confidence 49999999 98 89999977787743
No 8
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=87.94 E-value=0.26 Score=34.76 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCc-hHHHHHH-HHHHHhhC
Q 032821 26 NVIILTATNVTE-LDKEWNC-LIELLRSG 52 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~-v~p~l~~~ 52 (133)
.+|.|||. |. ++.||+. +.|.|+..
T Consensus 132 ~v~~LPG~--P~~~~~~~~~~v~p~L~~~ 158 (172)
T 1mkz_A 132 LILAMPGS--TKACRTAWENIIAPQLDAR 158 (172)
T ss_dssp EEEEECSS--HHHHHHHHHHTHHHHHCTT
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHhhh
Confidence 49999999 98 8999986 78999643
No 9
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=84.33 E-value=0.38 Score=34.54 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.5
Q ss_pred eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWNCLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~v~p~l~~ 51 (133)
-++.|||. |. +..||+.+.|.|..
T Consensus 140 ~v~~LPG~--P~s~~~~~~~v~P~L~~ 164 (189)
T 1jlj_A 140 LIINLPGS--KKGSQECFQFILPALPH 164 (189)
T ss_dssp EEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHH
Confidence 38999999 98 88889877777743
No 10
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=83.73 E-value=6.9 Score=25.42 Aligned_cols=52 Identities=6% Similarity=-0.016 Sum_probs=37.8
Q ss_pred hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
..+.++.+...+.+-.+-.+|+..+..+|+.+++.+.+.+++..+.+.+.+.
T Consensus 43 ~~~~idgl~~~~~~gwvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~ 94 (112)
T 1wjw_A 43 LQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVF 94 (112)
T ss_dssp HHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcEEEEcCCcEEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4556666766666656778888667779999999998887766666665543
No 11
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=83.55 E-value=8.1 Score=26.07 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=37.0
Q ss_pred EEEE-ecCChhh---hhHHHHHHhhhCCCceEEEccc-cCCCcEEEEEEecCHHHHHHHHHHHHH
Q 032821 63 KSLT-TNLSDLE---AAQPLSKLCLEFPDLHIGCYRK-SRQGPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 63 ~~l~-~g~~Es~---l~~~L~~l~~~~~~v~igsyp~-~~~~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
..++ +|.||-. ++..-+.+..+| ++.+.+.-- .+.+-..|.++|+|.+.+++|..+...
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~ef-ni~v~y~imgsgsgvm~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEF-NINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhc-ceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 4466 6999864 444445566666 555444331 123346899999999888877665543
No 12
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=80.29 E-value=4 Score=25.52 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=38.5
Q ss_pred ecCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCee
Q 032821 67 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 130 (133)
Q Consensus 67 ~g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 130 (133)
+--.||+++..|.++..- --+.+..++||++.++...+.++..+-+.+.|..-.|.
T Consensus 22 tvtteselqkvlnelmdy--------ikkqgakrvrisitartkkeaekfaailikvfaelgyn 77 (106)
T 1qys_A 22 TVTTESELQKVLNELMDY--------IKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYN 77 (106)
T ss_dssp EESSSSHHHHHHHHHHHH--------HHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeeHHHHHHHHHHHHHH--------HHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCc
Confidence 356799999999887531 11223457999999998888887777777666544443
No 13
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=77.38 E-value=7.3 Score=25.48 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=40.6
Q ss_pred EEEE-ecCChhhhhHHHHHHhhh-CC-CceEEEccccCCC--cEEEEEEecCHHHHHHHHHHHHH
Q 032821 63 KSLT-TNLSDLEAAQPLSKLCLE-FP-DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 63 ~~l~-~g~~Es~l~~~L~~l~~~-~~-~v~igsyp~~~~~--~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
..++ +|..+.++.+.+.++.++ .| +..+...++..+. .+.+++...+.+.++++.++|.+
T Consensus 37 y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 37 FTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred ceEEEEEECcHHHHHHHHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 4455 477666677777776544 46 5666667764443 36888888899988888877754
No 14
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=73.17 E-value=11 Score=23.69 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=36.4
Q ss_pred hhhhHHHHHHhhhCCCceEEEccccCC--Cc--EEEEEEec-C-HHHHHHHHHHHHHHhc
Q 032821 72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ--GP--LIISFEGK-D-QARIEAAIESLFKKFH 125 (133)
Q Consensus 72 s~l~~~L~~l~~~~~~v~igsyp~~~~--~~--v~l~~~~~-~-~~~~~~~~~~l~~~l~ 125 (133)
-.|...|+....+.|+|.++.|--.++ .. +||..++. + .+.+++|.+.|.+.+.
T Consensus 22 HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~ 81 (92)
T 2pa8_L 22 HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTS 81 (92)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 568888988877889999999975443 33 45555542 4 3556777777766553
No 15
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=68.43 E-value=15 Score=23.39 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 77 PLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 77 ~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
.++++..++++++|. .|+ ..=.|+++|. .+.+++|.+.|.+.+
T Consensus 48 ~Ik~i~~~~~~v~I~-fp~---~~~~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 48 NLAKITQQMPKVHIE-FTE---GEDKITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp HHHHHHHHCSSSEEE-ECS---SSCEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCcEEE-eCC---CCCEEEEECC-HHHHHHHHHHHHHHH
Confidence 347787778889886 454 2235788887 555677777666554
No 16
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=68.29 E-value=9.9 Score=23.99 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=31.0
Q ss_pred HHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 76 QPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 76 ~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
..++++++++++++|-+ |..+...-++++.|.+. .+++|.+.+.+...
T Consensus 37 k~Ir~I~eetggv~I~i-~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 37 RLIRSIMEECGGVHIHF-PVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHHHTSCEEEC-CCTTTTCCEEEEESCHH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCEEEe-CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHh
Confidence 34577777776788765 54333344677778766 67777777766543
No 17
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=64.87 E-value=23 Score=23.26 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=35.0
Q ss_pred hhhhHHHHHHhhhCCCceEEEccccCC--Cc--EEEEEEecC-HHHHHHHHHHHHHHh
Q 032821 72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ--GP--LIISFEGKD-QARIEAAIESLFKKF 124 (133)
Q Consensus 72 s~l~~~L~~l~~~~~~v~igsyp~~~~--~~--v~l~~~~~~-~~~~~~~~~~l~~~l 124 (133)
-.|...|+....+.|+|.++.|--.++ .. ++|..+|.. .+.+++|.+.|.+.+
T Consensus 32 HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~p~eaL~~al~~L~~~~ 89 (115)
T 1xpp_A 32 NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLY 89 (115)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCChHHHHHHHHHHHHHHH
Confidence 568888988888889999999875443 33 455555444 344566666665544
No 18
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=62.30 E-value=20 Score=23.69 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=35.4
Q ss_pred hhhhHHHHHHhhhCCCceEEEccccCC--CcE--EEEEEec-C-HHHHHHHHHHHHHHh
Q 032821 72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ--GPL--IISFEGK-D-QARIEAAIESLFKKF 124 (133)
Q Consensus 72 s~l~~~L~~l~~~~~~v~igsyp~~~~--~~v--~l~~~~~-~-~~~~~~~~~~l~~~l 124 (133)
-.|...|+....+.|+|.++.|--.++ ..+ ||..+|. + .+.+++|.+.|.+.+
T Consensus 40 HTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~eaL~~a~~~L~~~~ 98 (120)
T 1twf_K 40 HTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKL 98 (120)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 568888988877889999999975444 334 5555443 3 345677776666544
No 19
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=57.82 E-value=26 Score=22.21 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=30.8
Q ss_pred hhhhHHHHHHhh---hCCCceEEEccccC-CCcEEEEEEecCHHHHHHHHHHHHH
Q 032821 72 LEAAQPLSKLCL---EFPDLHIGCYRKSR-QGPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 72 s~l~~~L~~l~~---~~~~v~igsyp~~~-~~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
+.+-..|..+.. .-|++++-+.-.+. .+.++|.+.++|-+.+|++.+.+.+
T Consensus 8 ~~fl~lL~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~ 62 (95)
T 2w7v_A 8 VAMLSWLAALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAE 62 (95)
T ss_dssp HHHHHHGGGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhc
Confidence 344444444432 33677777766533 2467888888887777776666643
No 20
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=56.23 E-value=2.9 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=17.7
Q ss_pred CcccEEEec-eEEEeeCCCCCc-hHHHHHH
Q 032821 17 LLLPLIKCQ-NVIILTATNVTE-LDKEWNC 44 (133)
Q Consensus 17 gtAPg~~i~-~v~~LPGv~~P~-m~~m~~~ 44 (133)
++| |+.=+ -++.|||. |. ++.+|+.
T Consensus 119 ~~a-G~~~~~~v~~LPG~--P~a~~~~~~~ 145 (195)
T 1di6_A 119 QVG-VIRKQALILNLPGQ--PKSIKETLEG 145 (195)
T ss_dssp CCE-EEETTEEEEEECSS--HHHHHHHHHE
T ss_pred ceE-EEECCEEEEECCCC--HHHHHHHHHH
Confidence 444 65312 49999999 98 8888875
No 21
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=56.10 E-value=32 Score=21.66 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=25.7
Q ss_pred hCCCceEEE-ccccCCCcEEEEEEecCHHHHHHHHHHHHH
Q 032821 84 EFPDLHIGC-YRKSRQGPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 84 ~~~~v~igs-yp~~~~~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
..|++++-. +. ..+++.+++++++.+.+.+....+++
T Consensus 28 ~ipgvEi~~~~~--~~GkiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 28 AFPGCEVAVSDA--PSGQLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TSTTEEEEEEET--TTTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecC--CCCCEEEEEEeCCHHHHHHHHHHHhc
Confidence 357888722 22 25789999999998877776655543
No 22
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=55.59 E-value=7.3 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=18.4
Q ss_pred eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWNCLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~v~p~l~~ 51 (133)
-||.|||- |. ....|+.+.|.|..
T Consensus 152 ~V~~LPGn--P~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 152 LVVNLAGS--RYAVRDGMATLNPLAAH 176 (185)
T ss_dssp EEEEECSS--HHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHH
Confidence 39999999 97 66777767787743
No 23
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=54.91 E-value=78 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=28.4
Q ss_pred EEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 90 IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 90 igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
+-.+|+..+..+|+.+++.+++.+++..+.+.+.+.
T Consensus 418 ~lvRpSgTEP~irvy~Ea~~~~~~~~~~~~~~~~i~ 453 (455)
T 2f7l_A 418 FLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453 (455)
T ss_dssp EEEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred EEEeeCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 456676555668999999999988888888887764
No 24
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=47.33 E-value=43 Score=21.31 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=29.5
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
-+|++..|-....+.+.+.++| |...+++|.+...+...+
T Consensus 27 A~V~lv~~~~~~~G~~~vii~G-dVsaV~~Av~ag~~~~~~ 66 (99)
T 3cim_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVSAGIEAANR 66 (99)
T ss_dssp SSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHhh
Confidence 4999999988777788888888 666667666666555443
No 25
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=46.61 E-value=52 Score=21.93 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
-+|++..|-....+.+.+.++| |...+++|.+...+...
T Consensus 29 AnVelv~~e~~~~G~~~vii~G-DVsaV~aAveag~~~~~ 67 (125)
T 2a10_A 29 GRITIVGYIRAGSARFTLNIRG-DVQEVKTAMAAGIDAIN 67 (125)
T ss_dssp SSCEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 4899999988777788888888 66666766666655544
No 26
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.19 E-value=24 Score=23.48 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=35.1
Q ss_pred hhhhHHHHHHhhhCCCceEEEccccCC--CcEEEEEE--ec-C-HHHHHHHHHHHHHHh
Q 032821 72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ--GPLIISFE--GK-D-QARIEAAIESLFKKF 124 (133)
Q Consensus 72 s~l~~~L~~l~~~~~~v~igsyp~~~~--~~v~l~~~--~~-~-~~~~~~~~~~l~~~l 124 (133)
-.|...|+....+.|+|.++.|--.++ ..+.|++. |. + .+.+++|.+.|.+.+
T Consensus 39 HTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~~~ 97 (123)
T 3h0g_K 39 HTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHL 97 (123)
T ss_dssp SSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 568999998878889999998864333 34444444 32 3 455667766666544
No 27
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=45.81 E-value=32 Score=19.43 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHhcCCCe
Q 032821 100 PLIISFEGKDQARIEAAIESLFKKFHRGAF 129 (133)
Q Consensus 100 ~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 129 (133)
+|+|++.++...+.++..+-+.+.|..-.|
T Consensus 3 rvrisitartkkeaekfaailikvfaelgy 32 (62)
T 2gjh_A 3 RVRISITARTKKEAEKFAAILIKVFAELGY 32 (62)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHHhCc
Confidence 578888888888777777777666554433
No 28
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=45.52 E-value=57 Score=26.70 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=35.8
Q ss_pred hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
+.+.++.+...+++=.+-.+|+..+.-+|+.+++.+++.+++..+++.+.+
T Consensus 493 ~~~~iDGv~~~~~~gw~lvRpSGTEP~lRvy~Ea~~~e~~~~l~~~~~~~v 543 (544)
T 2dka_A 493 MQDEIDKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSKAVSELV 543 (544)
T ss_dssp HHHHHHHHHTTSTTCEEEEEEC----CEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhcccceEEEEcCCEEEEEEcCCCCCEEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 344556665556665778888866667999999999998888888877654
No 29
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=44.64 E-value=12 Score=29.79 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWN-CLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~-~v~p~l~~ 51 (133)
.+|.|||. |. +..+|+ .+.|.|+.
T Consensus 303 ~v~~LPG~--P~sa~~~~~~~v~P~L~~ 328 (419)
T 2fts_A 303 IIFALPGN--PVSAVVTCNLFVVPALRK 328 (419)
T ss_dssp EEEEECSS--HHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence 48999999 97 778887 57999865
No 30
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=43.88 E-value=84 Score=25.18 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=34.1
Q ss_pred hHHHHHHhhhC-CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 75 AQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 75 ~~~L~~l~~~~-~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
.+.++.+...+ ++=-+=.+|+..+.-+|+.++++|++.+++..+.+.+.+.
T Consensus 412 ~~~i~~~~~~~~~~gw~lvRpSgTEP~lRv~~Ea~~~~~~~~l~~~~~~~i~ 463 (469)
T 3pdk_A 412 KEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVK 463 (469)
T ss_dssp HHHHHHHHHHCCSSCEEEEECCSSSCCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheEeCCCcEEEEEeCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 33444443333 3434566777666669999999999988877777666554
No 31
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=42.76 E-value=1.2e+02 Score=23.94 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=25.7
Q ss_pred EEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 91 GCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 91 gsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
-.+|+..+..+|+.+++.+++.+++..+.+.+.+.
T Consensus 419 lvRpSgTEP~~rvy~Ea~~~~~~~~l~~~~~~~i~ 453 (463)
T 1p5d_X 419 LVRASNTTPVLVLRFEADTEEELERIKTVFRNQLK 453 (463)
T ss_dssp EEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 45565445568999999999888877777666554
No 32
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=41.58 E-value=43 Score=20.63 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=23.0
Q ss_pred CcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 99 GPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 99 ~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
..++|+++|.|...++++++.+.+...
T Consensus 4 ~kiRI~L~S~d~~~Ld~~~~~Iv~~ak 30 (83)
T 3r2c_J 4 EKIRIKLRAYDHRLLDQSVKQIIETVK 30 (83)
T ss_dssp CCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999887654
No 33
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=40.02 E-value=16 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred eEEEeeCCCCCc-hHHHHHH-HHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWNC-LIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~-v~p~l~~ 51 (133)
.+|.|||. |. ...+|+. +.|.|+.
T Consensus 296 ~v~~LPG~--P~sa~~~~~~~v~P~L~~ 321 (402)
T 1uz5_A 296 PVFGLPGY--PTSCLTNFTLLVVPLLLR 321 (402)
T ss_dssp EEEEECSS--HHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence 49999999 97 7788885 7888865
No 34
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=39.95 E-value=77 Score=20.75 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
-+|++..|-....+.+.+.++| |...+++|.+...+...+
T Consensus 27 AnVelv~~~~~~~G~~~vii~G-DVsaV~aAveag~~~~~~ 66 (116)
T 2a1b_A 27 ARVTLVGYEKIGSGRVTVIVRG-DVSGVQASVSAGIEAANR 66 (116)
T ss_dssp SSCEEEEEEECSSSEEEEEEES-CHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHhh
Confidence 4999999988777788888888 666677776666655543
No 35
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=39.62 E-value=63 Score=19.66 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=29.8
Q ss_pred EEEEecCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHH---HHHHHHHhc
Q 032821 63 KSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAA---IESLFKKFH 125 (133)
Q Consensus 63 ~~l~~g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~---~~~l~~~l~ 125 (133)
-.+++.-+ -+++..|.++.+. +++.+...+.|++++++.+..++. .+.+..+++
T Consensus 21 idirvstg-keleralqeleka--------laragarnvqitisaendeqakelleliarllqklg 77 (96)
T 2jvf_A 21 IDIRVSTG-KELERALQELEKA--------LARAGARNVQITISAENDEQAKELLELIARLLQKLG 77 (96)
T ss_dssp EEEECCSS-SHHHHHHHHHHHH--------HHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEccc-HHHHHHHHHHHHH--------HHhccccceEEEEEecChHHHHHHHHHHHHHHHHhC
Confidence 34554333 4566667766543 233334457888888887665544 444444444
No 36
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=39.35 E-value=1.4e+02 Score=23.57 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=28.0
Q ss_pred eEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 89 HIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 89 ~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
-+-.+|+..+..+|+.+++.+++.+++..+.+.+.+.
T Consensus 415 w~lvRpSgTEP~irvy~Ea~~~~~~~~l~~~~~~~i~ 451 (455)
T 1wqa_A 415 WVLVRASGTEPIIRIFSEAKSKEKAQEYLNLGIELLE 451 (455)
T ss_dssp EEEECCCSSSSBCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 3456676555668999999999888888877777664
No 37
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=39.29 E-value=41 Score=21.22 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=32.4
Q ss_pred ChhhhhHHHHHHhhhCCCceEEEccc----cCC---CcEEEEEEecCHHHHHHHHHHHHHH
Q 032821 70 SDLEAAQPLSKLCLEFPDLHIGCYRK----SRQ---GPLIISFEGKDQARIEAAIESLFKK 123 (133)
Q Consensus 70 ~Es~l~~~L~~l~~~~~~v~igsyp~----~~~---~~v~l~~~~~~~~~~~~~~~~l~~~ 123 (133)
+++.-++.|+++.+++ ++.+.++-. ..+ |.+.+.+.| +.+.++++.+.|++.
T Consensus 30 g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G-~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 30 GQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHG-TQQDTQAAIAWLQEH 88 (106)
T ss_dssp EECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEES-CHHHHHHHHHHHHHT
T ss_pred CCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeC-CHHHHHHHHHHHHHC
Confidence 4555577788888888 566555542 111 234666666 455677888888764
No 38
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=38.65 E-value=83 Score=20.75 Aligned_cols=57 Identities=9% Similarity=0.196 Sum_probs=39.5
Q ss_pred ecCChhhhhHHHHHHhhhCCCceEEEccc---cCCCcEEEEEEec-CHHHHHHHHHHHHHHhc
Q 032821 67 TNLSDLEAAQPLSKLCLEFPDLHIGCYRK---SRQGPLIISFEGK-DQARIEAAIESLFKKFH 125 (133)
Q Consensus 67 ~g~~Es~l~~~L~~l~~~~~~v~igsyp~---~~~~~v~l~~~~~-~~~~~~~~~~~l~~~l~ 125 (133)
+|+|+..+.+.|..+. ++ ++++-+--. ...+..+|+--|. |.+-+..=.+.|++.++
T Consensus 43 TGmPRRTiQd~I~aL~-el-gI~~~FvQ~G~R~n~GyY~I~dWG~idk~Wv~~~~~~i~~~L~ 103 (117)
T 3ke2_A 43 TGMPRRTLQDAIASFA-DI-GIEVEFVQDGERHNAGYYRIRTWGPISSAWMDTHVDEVKSLLG 103 (117)
T ss_dssp HCCCHHHHHHHHHTGG-GG-TCEEEEECCTTCCSCCEEEEEECTTBCHHHHHHHHHHHHHHHT
T ss_pred HCCCHhHHHHHHHHhh-hC-CeEEEEEeccccCCCccEEEeecCccCHHHHHHHHHHHHHHhC
Confidence 7999999999999987 34 777766532 1224678887775 56656655666666664
No 39
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=38.12 E-value=53 Score=20.36 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 100 PLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 100 ~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
.++|+++|.|...++++++.+.+...+
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~ak~ 36 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETAKR 36 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998876553
No 40
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.53 E-value=76 Score=19.96 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=33.4
Q ss_pred EEEEecCChhhhhHH-------HHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 63 KSLTTNLSDLEAAQP-------LSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 63 ~~l~~g~~Es~l~~~-------L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
++..+.++-..+... +++|++++ +++|-+-. .+...-.+++.|.+ +.+++|.+.+.+.+
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eet-g~~I~I~~-~g~~~~~V~I~G~~-e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEF-EVNIHVPA-PELQSDIIAITGLA-ANLDRAKAGLLERV 82 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHT-CCEEECCC-TTTTCCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHH-CCEEEecC-CCCCcceEEEEcCH-HHHHHHHHHHHHHH
Confidence 333455655554443 46777776 77777643 22222356666765 55777777666544
No 41
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=37.04 E-value=79 Score=20.00 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
-+|++..|-..+.+.+.+.++|+ ...++++.+...+..
T Consensus 31 A~V~l~~~~~~~~g~~tv~i~Gd-v~aV~aAv~ag~~~~ 68 (98)
T 2ewh_A 31 AEVRLVGRQFVGGGYVTVLVRGE-TGAVNAAVRAGADAC 68 (98)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCeEEEEEEEEc-HHHHHHHHHHHHHHH
Confidence 49999998876677777778874 444566666655544
No 42
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=36.78 E-value=40 Score=20.72 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=15.1
Q ss_pred cEEEEEEecCHHH-HHHHHHHHHHHh
Q 032821 100 PLIISFEGKDQAR-IEAAIESLFKKF 124 (133)
Q Consensus 100 ~v~l~~~~~~~~~-~~~~~~~l~~~l 124 (133)
.++|+++|.|+++ +++..+.+.+.|
T Consensus 60 ~i~i~a~G~De~~A~~~l~~l~~~~f 85 (88)
T 3le1_A 60 VVKLSAEGDDEEEAIKALVDLIESKF 85 (88)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhcc
Confidence 4889999999763 333333333333
No 43
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=36.24 E-value=32 Score=21.18 Aligned_cols=58 Identities=5% Similarity=0.008 Sum_probs=34.8
Q ss_pred EEEE-ecCChhh-hhHHHHHHhhhCCCceEE-EccccCCC--cEEEEEEecCHHHHHHHHHHHHH
Q 032821 63 KSLT-TNLSDLE-AAQPLSKLCLEFPDLHIG-CYRKSRQG--PLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 63 ~~l~-~g~~Es~-l~~~L~~l~~~~~~v~ig-syp~~~~~--~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
-.++ .|..+.+ +.+.+.++..++ ..+- +.++..+. .+.+++...++++++++.++|.+
T Consensus 16 ~~~Kvig~~~~~~~~~~V~~v~~~~--~~~~~~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~ 78 (86)
T 2h9z_A 16 WDYRVIMTTKDTSTLKELLETYQRP--FKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQ 78 (86)
T ss_dssp EEEEEEECCSCTHHHHHHSTTCCSS--EECCBSCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTC
T ss_pred ceEEEEEECCcHHHHHHHHHHHhcc--CCCcccccCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 3445 4766565 666666654332 1211 24443332 37888889999988888877753
No 44
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=35.24 E-value=52 Score=20.85 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=10.7
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.++|+++|+|++++
T Consensus 72 ~i~i~a~G~Dee~A 85 (100)
T 1kkl_H 72 EITISASGADENDA 85 (100)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 37888999997643
No 45
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=35.05 E-value=55 Score=19.99 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=10.8
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.++|+++|+|++++
T Consensus 60 ~i~i~~~G~De~~A 73 (88)
T 1y51_A 60 TIKITAEGADAAEA 73 (88)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 47899999997643
No 46
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=34.68 E-value=1e+02 Score=20.92 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=38.6
Q ss_pred cCChhhhhHHHHHHhhhCCCceEEEccccC---CC--cEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 68 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSR---QG--PLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 68 g~~Es~l~~~L~~l~~~~~~v~igsyp~~~---~~--~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
++.|..+++..+++.++++-..+..+=+.+ .+ .+-+.+.+.....+=+|++.+.+.++.
T Consensus 63 ~ma~~~l~~I~~ea~~r~~~~~v~i~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~ 126 (147)
T 2wp4_A 63 PMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQ 126 (147)
T ss_dssp HHHHHHHHHHHHHHHTSSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHh
Confidence 777888888888888888755544443322 22 256677777776655666666666653
No 47
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=33.70 E-value=69 Score=25.68 Aligned_cols=34 Identities=9% Similarity=-0.069 Sum_probs=24.1
Q ss_pred EEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 91 GCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 91 gsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
-.+|+..+..+|+.+++++++.+++..+.+.+.+
T Consensus 438 lvRpSgTEP~lrvy~Ea~s~e~~~~l~~~~~~~i 471 (481)
T 4hjh_A 438 HYRASGNAPELRCYVESSDDTQAAKLQALGLEIA 471 (481)
T ss_dssp EEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3456555556899999999988776666655544
No 48
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.49 E-value=18 Score=24.84 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=16.3
Q ss_pred eEEEeeCCCCCc-hHHHHHHHHHHHh
Q 032821 26 NVIILTATNVTE-LDKEWNCLIELLR 50 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~~v~p~l~ 50 (133)
-|+.|||- |. ....|+.+.|.|.
T Consensus 128 ~v~~LPG~--P~aa~~~~~~v~P~l~ 151 (164)
T 3pzy_A 128 LIVNLPGS--PGGVRDGLGVLAGVLD 151 (164)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTTHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHH
Confidence 38999999 96 5555665566653
No 49
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=33.41 E-value=72 Score=18.44 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHH
Q 032821 77 PLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 123 (133)
Q Consensus 77 ~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~ 123 (133)
.++++++++ +++|-+-. .+...=.+++.|.. +.+++|.+.+.+.
T Consensus 26 ~I~~I~e~t-g~~I~i~~-~g~~~~~V~I~G~~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 26 NINRIKDQY-KVSVRIPP-DSEKSNLIRIEGDP-QGVQQAKRELLEL 69 (71)
T ss_dssp HHHHHHHHT-CCEEECCC-CCSSSEEEEEEESS-HHHHHHHHHHHHT
T ss_pred cHHHHHHHH-CCEEEECC-CCCcccEEEEEcCH-HHHHHHHHHHHHH
Confidence 357777776 77777633 22222356666774 5578888887764
No 50
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=33.35 E-value=64 Score=19.65 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=10.9
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.++|+++|.|++++
T Consensus 60 ~i~i~~~G~De~~A 73 (88)
T 1sph_A 60 EITISASGADENDA 73 (88)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 47999999997643
No 51
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=33.13 E-value=22 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.1
Q ss_pred ceEEEeeCCCCCc-hHHHHHH-HHHHHhh
Q 032821 25 QNVIILTATNVTE-LDKEWNC-LIELLRS 51 (133)
Q Consensus 25 ~~v~~LPGv~~P~-m~~m~~~-v~p~l~~ 51 (133)
..++.|||. |. ...+|+. +.|.|+.
T Consensus 291 ~~v~~LPG~--P~sa~~~~~~~v~P~L~~ 317 (396)
T 1wu2_A 291 EKVFIMSGY--PVSVFAQFNLFVKHALAK 317 (396)
T ss_dssp TTEEECCSS--HHHHHHHHHHTHHHHHHH
T ss_pred CeEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence 569999999 97 7788886 5688754
No 52
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=33.09 E-value=92 Score=19.58 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHhhhCCCceEEEccccC----CCcEEEEEEecCHHHHHHHHHHHHHHhcCC
Q 032821 76 QPLSKLCLEFPDLHIGCYRKSR----QGPLIISFEGKDQARIEAAIESLFKKFHRG 127 (133)
Q Consensus 76 ~~L~~l~~~~~~v~igsyp~~~----~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~ 127 (133)
..+++|+++. +++|-...... ...-.+++.| +.+.+++|.+.+.+.+.+.
T Consensus 27 ~~Ik~I~~~T-Ga~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 27 ENVKAINQQT-GAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CHHHHHHHHS-SSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHh-CCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhcc
Confidence 4467777765 66776655321 1224577777 7788899999999887654
No 53
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=32.75 E-value=1.1e+02 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=22.4
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 100 PLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 100 ~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
...+.+.+.+.+.+++|.+.+.+.+..
T Consensus 73 ~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 467777888999999999999988754
No 54
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=32.49 E-value=1.2e+02 Score=20.63 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=44.4
Q ss_pred CCeEEEEEE-e-cCChhhhhHHHHHHhhhCCCceEEEccccC---CC--cEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 58 EPYTSKSLT-T-NLSDLEAAQPLSKLCLEFPDLHIGCYRKSR---QG--PLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 58 ~~~~~~~l~-~-g~~Es~l~~~L~~l~~~~~~v~igsyp~~~---~~--~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
..+....+. + ++.|..+++..+++..+++...+..+=+.+ .+ .+-+.+.+.....+=+|++.+.+.++.
T Consensus 43 ~~V~~L~ye~y~~ma~~~l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~ 118 (149)
T 2q5w_E 43 VKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKE 118 (149)
T ss_dssp SCEEEEEEEECHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCchHHHHHHHHHHHHHHHhCCCcEEEEEEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHh
Confidence 345444555 4 788999999999998898755554443322 22 256677777776665666666666653
No 55
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=32.17 E-value=24 Score=28.10 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=19.3
Q ss_pred eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWN-CLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~-~v~p~l~~ 51 (133)
.+|.|||. |. ...+|+ .+.|.|+.
T Consensus 293 ~v~~LPGn--P~sa~~~~~~~v~P~L~~ 318 (411)
T 1g8l_A 293 WFCGLPGN--PVSATLTFYQLVQPLLAK 318 (411)
T ss_dssp EEEECCSS--HHHHHHHHHHTHHHHHHH
T ss_pred EEEEcCCC--hHHHHHHHHHHHHHHHHH
Confidence 49999999 97 778886 47888854
No 56
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=32.16 E-value=81 Score=25.46 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=24.6
Q ss_pred EccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 92 CYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 92 syp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
.+|+..+.-+|+.+++++++.+++..+.+.+.+.
T Consensus 442 vRpSgTEP~lrv~~Ea~~~~~~~~l~~~~~~~i~ 475 (485)
T 3uw2_A 442 ARSSNTTPVVVLRFEATSDAALARIQDDFRRALK 475 (485)
T ss_dssp EEECSSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCeEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3555444558999999999988877777666554
No 57
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=31.29 E-value=35 Score=21.32 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=29.3
Q ss_pred ChhhhhHHHHHHhhhCCCceEEEccc----cCC---CcEEEEEEecCHHHHHHHHHHHHH
Q 032821 70 SDLEAAQPLSKLCLEFPDLHIGCYRK----SRQ---GPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 70 ~Es~l~~~L~~l~~~~~~v~igsyp~----~~~---~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
+++.-.+.+.++.+++ ++.+.++-. ... +.+.+.+.|++.+.++++.+.|++
T Consensus 29 g~~~~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 29 GSTTTEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EESCHHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4455577788887776 343333321 111 234555566244557888888876
No 58
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=31.24 E-value=1.4e+02 Score=21.13 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
-+|++..+-+.+.+.+.+.+.| |.+.++++.+...+..++
T Consensus 27 a~V~l~~~~~~~~G~~~~ii~G-dv~aV~~Av~a~~~~~~~ 66 (192)
T 3n79_A 27 ANVDLLVSKTISPGKFLLMLGG-DIGAIQQAIETGTSQAGE 66 (192)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE-CHHHHHHHHHHHHHHHGG
T ss_pred CCcEEEEEEeecCceEEEEEEc-cHHHHHHHHHHHHHHhhc
Confidence 4999998887777888888888 777788887777766654
No 59
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=30.89 E-value=73 Score=19.41 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=10.9
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.+.|+++|.|++++
T Consensus 60 ~i~i~~~G~De~~A 73 (88)
T 1ptf_A 60 DVTITVDGADEAEG 73 (88)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 47899999997643
No 60
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=30.46 E-value=52 Score=19.99 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=10.6
Q ss_pred cEEEEEEecCHHH
Q 032821 100 PLIISFEGKDQAR 112 (133)
Q Consensus 100 ~v~l~~~~~~~~~ 112 (133)
.++|+++|+|+++
T Consensus 60 ~i~i~~~G~De~~ 72 (85)
T 3ccd_A 60 VVTISAEGEDEQK 72 (85)
T ss_dssp EEEEEEESTTHHH
T ss_pred EEEEEEeCCCHHH
Confidence 4899999999764
No 61
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=29.90 E-value=53 Score=26.13 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=34.4
Q ss_pred hhHHHHHHhhhC-CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 74 AAQPLSKLCLEF-PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 74 l~~~L~~l~~~~-~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
+.+.+++...++ ++=-+=.+|+..+.-+|+.++++|++.+++..+.+.+.+..
T Consensus 387 ~~~~i~~~~~~~~~~gw~lvR~SgTEP~~rv~~Ea~~~~~~~~l~~~~~~~i~~ 440 (443)
T 3i3w_A 387 VASDVNDVEKRLGNRGRVLLRPSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQ 440 (443)
T ss_dssp THHHHHHHHHHHGGGEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 445555443322 23334456665455589999999999988888888776653
No 62
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.74 E-value=1e+02 Score=19.01 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHhhhCCCceEEEccccCC-CcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821 78 LSKLCLEFPDLHIGCYRKSRQ-GPLIISFEGKDQARIEAAIESLFKKF 124 (133)
Q Consensus 78 L~~l~~~~~~v~igsyp~~~~-~~v~l~~~~~~~~~~~~~~~~l~~~l 124 (133)
++++++++ +++|-+... +. ..=.+++.|. .+.+++|.+.+.+..
T Consensus 39 Ir~I~e~t-g~~I~i~~~-g~~~~~~V~I~G~-~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 39 IRKIMDEF-KVDIRFPQS-GAPDPNCVTVTGL-PENVEEAIDHILNLE 83 (95)
T ss_dssp HHHHHHHH-TCEEECCCT-TCSCTTEEEEESC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCeEEecCC-CCCCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46776666 778777442 21 1223555666 456777777766544
No 63
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=29.48 E-value=1.5e+02 Score=20.79 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
-+|++..+-+...+.+.+.++| |...++++.+...+..+.
T Consensus 27 a~V~l~~~~~~~~G~~~vii~G-dv~aV~~Av~a~~~~~~~ 66 (182)
T 3nwg_A 27 AQVDLLEAKPVCPGKYIVLICG-DVAAVQSSVTAGKTMAAH 66 (182)
T ss_dssp SSEEEEEEEECSTTCEEEEEEE-CHHHHHHHHHHHHHHHGG
T ss_pred CCeEEEEEEeccCcEEEEEEEe-cHHHHHHHHHHHHHhccC
Confidence 4999999877666777788888 677777777776666554
No 64
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=28.16 E-value=47 Score=20.56 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=29.7
Q ss_pred ChhhhhHHHHHHhhhCCCceEEEcccc----CC---CcEEEEEEecCHHHHHHHHHHHHH
Q 032821 70 SDLEAAQPLSKLCLEFPDLHIGCYRKS----RQ---GPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 70 ~Es~l~~~L~~l~~~~~~v~igsyp~~----~~---~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
+++.-.+.+.++..++ ++.+..+-.. .. |.+.+.+.|+ .+.++++.+.|++
T Consensus 32 g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~-~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 32 GEQAKLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLLGE-EQNILAAIEGLRK 89 (100)
T ss_dssp SCSCSSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEESC-HHHHHHHHHHHHH
T ss_pred CCCcCchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEECC-HHHHHHHHHHHHH
Confidence 3444566677777766 5555544321 11 3456666765 4447788888876
No 65
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=26.93 E-value=1.2e+02 Score=18.99 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=35.2
Q ss_pred EEEEE--ecCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecC---HHHHHHHHHHHHHHhcCC
Q 032821 62 SKSLT--TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKD---QARIEAAIESLFKKFHRG 127 (133)
Q Consensus 62 ~~~l~--~g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~---~~~~~~~~~~l~~~l~~~ 127 (133)
.+.++ .+++|.+++-.+.++.. | +-..+...+.|+++|.. .+.-.+..+.+.+.+.+.
T Consensus 7 vKEikl~p~Id~hD~~~K~k~a~~-F-------L~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~ 69 (94)
T 1tig_A 7 VKEVRLSPTIEEHDFNTKLRNARK-F-------LEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADI 69 (94)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHH-H-------HHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTT
T ss_pred eEEEEecCCcCcchHHHHHHHHHH-H-------HHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhh
Confidence 46677 38999999999998753 2 22211123455556765 333456666677766643
No 66
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=26.82 E-value=1.2e+02 Score=18.85 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=32.4
Q ss_pred EEEE--ecCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecC---HHHHHHHHHHHHHHhcC
Q 032821 63 KSLT--TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKD---QARIEAAIESLFKKFHR 126 (133)
Q Consensus 63 ~~l~--~g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~---~~~~~~~~~~l~~~l~~ 126 (133)
+.++ .+++|.+++-.+.++.. | +-..+...+.|+++|.. .+.-.+..+.+.+.+.+
T Consensus 3 KEikl~p~Id~hD~~~K~k~a~~-F-------L~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d 63 (89)
T 1i96_V 3 KSIKFRVKIDEHDYQTKLGHIKR-F-------LQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKD 63 (89)
T ss_pred eEEEecCCcCcchHHHHHHHHHH-H-------HHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhh
Confidence 3445 48999999999998753 2 22211233555666754 33334555555555554
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.65 E-value=1.1e+02 Score=18.45 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=29.8
Q ss_pred EEEEe-cCChhhhhHHHHHHhhhCCCceEEEccccCC--CcEEEEEEecCHHHHHHHHHHH
Q 032821 63 KSLTT-NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ--GPLIISFEGKDQARIEAAIESL 120 (133)
Q Consensus 63 ~~l~~-g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~--~~v~l~~~~~~~~~~~~~~~~l 120 (133)
++|++ +++...=++.|.++-.++..|.--..+.... +.-.|.+ .+.+.+++|.+.+
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f--~~~~~A~~A~~~l 81 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEF--EDPRDAEDAVYGR 81 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEE--SCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEE--CCHHHHHHHHHHc
Confidence 45664 7776666677777766675443222232222 2223444 4666566666544
No 68
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=26.53 E-value=73 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=24.4
Q ss_pred EEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 90 IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 90 igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
+-.+|+..+..+|+.+++.+++.+++..+.+.+.+.
T Consensus 428 ~lvRpSgTEP~lrvy~Ea~~~~~~~~l~~~~~~~i~ 463 (464)
T 1tuo_A 428 VLFRASGTEPVVRIYVEAQSPELVRALLEEARKLVE 463 (464)
T ss_dssp EEEECC-----CEEEEEESSHHHHHHHHHHHHTTTC
T ss_pred EEEEcCCCccEEEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345565445568999999999988888888877653
No 69
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=26.45 E-value=1.5e+02 Score=22.65 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=33.3
Q ss_pred CChhhhhHHHHHHhhhCCCce-EEEccccCCCcEEEEEEecCHHHHHHHHHHHHHH
Q 032821 69 LSDLEAAQPLSKLCLEFPDLH-IGCYRKSRQGPLIISFEGKDQARIEAAIESLFKK 123 (133)
Q Consensus 69 ~~Es~l~~~L~~l~~~~~~v~-igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~ 123 (133)
+.+..+.+.|++|......++ +|+||......... ..+.......++.+++...
T Consensus 255 ~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 309 (313)
T 3mwb_A 255 ATDSRVADALAGLHRISPATRFLGSYARADKQPAVV-APHTSDAAFASAHAWVDSI 309 (313)
T ss_dssp TTSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCCCC-CTTCSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCcEEEEeeeecCccCCccc-CCCCCCcchhHHHHHHHHh
Confidence 566778999999977665555 79999754332211 1223345556666666554
No 70
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.40 E-value=1.4e+02 Score=19.47 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=30.5
Q ss_pred HHHHHhhhCCCceEEEccccC-----------CCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 77 PLSKLCLEFPDLHIGCYRKSR-----------QGPLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 77 ~L~~l~~~~~~v~igsyp~~~-----------~~~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
.+..|+++. +++|-..-+.. .-..++.+.+.|.+.+++|.+.+.+.+.
T Consensus 40 tiK~I~~eT-G~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 40 YLQHIQIET-GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp HHHHHHHHH-CCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 345665554 66666652200 1236778888999988888888777653
No 71
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.00 E-value=1e+02 Score=19.46 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=22.5
Q ss_pred cEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 100 PLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 100 ~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
.++|+++|-|...++++++.+.+....
T Consensus 3 kirI~LkS~d~~~Ld~~~~~i~~~ak~ 29 (102)
T 3j20_L 3 KARIKIASTNVRSLDEVANQIKQIAER 29 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 478999999999999998888876543
No 72
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=25.90 E-value=1.5e+02 Score=19.60 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
-+|++..|-....+.+.+.++|+ ...+++|.+...+...+
T Consensus 27 A~V~Lv~~~~~~~G~~~vii~GD-VsAV~aAv~ag~~~a~~ 66 (122)
T 3bn4_A 27 ARVTLVGYEKIGSGRVTVIVRGD-VSEVQASVTAGIENIRR 66 (122)
T ss_dssp SSCEEEEEEEEETTEEEEEEEEC-HHHHHHHHHHHHHHGGG
T ss_pred CCcEEEEEEccCCcEEEEEEEEc-HHHHHHHHHHHHHHHhh
Confidence 48999999887777888888884 44566666666655543
No 73
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.89 E-value=1.1e+02 Score=18.13 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=27.9
Q ss_pred EEEEEe-cCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHH
Q 032821 62 SKSLTT-NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120 (133)
Q Consensus 62 ~~~l~~-g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l 120 (133)
.++|++ +++...=++.|.++-..+-.+.+-.....+...-.-.++-.+.+.+++|.+.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 344554 67666556666665444434444333221111112223335666666665544
No 74
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=25.83 E-value=83 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.0
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.++|+++|+|++++
T Consensus 60 ~i~i~a~G~De~~A 73 (88)
T 1ka5_A 60 EITIYADGSDESDA 73 (88)
T ss_dssp EEEEEEESSSHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 47899999997643
No 75
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=25.83 E-value=89 Score=19.09 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.2
Q ss_pred cEEEEEEecCHHHH
Q 032821 100 PLIISFEGKDQARI 113 (133)
Q Consensus 100 ~v~l~~~~~~~~~~ 113 (133)
.++|+++|+|++++
T Consensus 59 ~i~i~a~G~De~~A 72 (88)
T 1pch_A 59 EITIQADGNDADQA 72 (88)
T ss_dssp EEEEEEESTTHHHH
T ss_pred EEEEEEeCCCHHHH
Confidence 48999999997643
No 76
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=25.48 E-value=1e+02 Score=17.76 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=30.6
Q ss_pred HHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 77 PLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 77 ~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
.+.+++++. +++|-.... +...=.+++.|. .+.+++|.+.+.+.+.+
T Consensus 26 ~Ik~I~~~t-ga~I~i~~~-~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 26 SVKKMREES-GARINISEG-NCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHHH-CCEEEECSS-CCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-CCEEEEecC-CCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 446666654 677776653 222234777777 77788888888887753
No 77
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=25.47 E-value=1.3e+02 Score=18.93 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=34.8
Q ss_pred EEEecCChhhhhH-------HHHHHhhhCCCceEEEccccCCC-cEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 64 SLTTNLSDLEAAQ-------PLSKLCLEFPDLHIGCYRKSRQG-PLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 64 ~l~~g~~Es~l~~-------~L~~l~~~~~~v~igsyp~~~~~-~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
++.+.++.+.+.. .+++|+++. +++|-........ .-.+++.++ .+.+++|.+.+.+.+.
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T-GakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDA-GVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQ 79 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHH-TCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHH-CcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 3344555555443 346676665 6777776532221 235677775 6667777777776553
No 78
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=25.21 E-value=1.2e+02 Score=20.61 Aligned_cols=58 Identities=7% Similarity=0.110 Sum_probs=37.8
Q ss_pred cCChhhhhHHHHHHhhhCCCceEEEccccC---CC--cEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 68 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSR---QG--PLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 68 g~~Es~l~~~L~~l~~~~~~v~igsyp~~~---~~--~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
++.|..+++..+++..+++-..+..+=+.+ .+ .+-+.+.+.....+=+|++.+.+.++
T Consensus 57 ~ma~~~l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK 119 (150)
T 1fm0_E 57 GMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLK 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHH
Confidence 778899999888988888744433332222 22 35667777777665566666666665
No 79
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.11 E-value=1.2e+02 Score=18.54 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=32.0
Q ss_pred ChhhhhHHHHHHhhhCCCceEEEcccc-C---C---CcEEEEEEecCHHHHHHHHHHHHH
Q 032821 70 SDLEAAQPLSKLCLEFPDLHIGCYRKS-R---Q---GPLIISFEGKDQARIEAAIESLFK 122 (133)
Q Consensus 70 ~Es~l~~~L~~l~~~~~~v~igsyp~~-~---~---~~v~l~~~~~~~~~~~~~~~~l~~ 122 (133)
+++.-.+.+.++..++ ++.+...-.. . . |.+.+.+.|+ .+.++++.+.|++
T Consensus 32 g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~-~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 32 GATVDAPLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAELFGN-EQDDSAAIEYLRE 89 (101)
T ss_dssp TTSCSSCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC-HHHHHHHHHHHHH
T ss_pred CCCcCchHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 5556677888888888 5655554321 1 1 3456666765 4447788888876
No 80
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=24.72 E-value=1.3e+02 Score=18.45 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=21.8
Q ss_pred cCChhhhhHHH----HHHhhhCCCc--eEEEccccCCCcEEEEEEecCH
Q 032821 68 NLSDLEAAQPL----SKLCLEFPDL--HIGCYRKSRQGPLIISFEGKDQ 110 (133)
Q Consensus 68 g~~Es~l~~~L----~~l~~~~~~v--~igsyp~~~~~~v~l~~~~~~~ 110 (133)
++|...+.... +.+...||+. .+-..+.. ... |++.|...
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s-~n~--lsV~g~~k 57 (81)
T 1ghh_A 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAA-ANN--LSVIGATK 57 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEES-SCE--EEEESCCH
T ss_pred CCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecC-CCc--eeecCCCh
Confidence 66755544433 3456778986 66666643 223 44455443
No 81
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=24.50 E-value=12 Score=18.91 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=8.4
Q ss_pred CccCCCCCceeee
Q 032821 1 MALLPEGTTELLH 13 (133)
Q Consensus 1 mA~vPega~~~l~ 13 (133)
||++|+|.+ .++
T Consensus 12 qa~ipk~gr-mlp 23 (34)
T 1ssz_A 12 QAMIPKGGR-MLP 23 (34)
T ss_dssp HHHCSSSCC-CCH
T ss_pred HHHccccch-hhH
Confidence 577888876 664
No 82
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=24.42 E-value=1.6e+02 Score=19.64 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred eEEEEEE-e-cCChhhhhHHHHHHhhhCCCceEEEccccC---CC--cEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821 60 YTSKSLT-T-NLSDLEAAQPLSKLCLEFPDLHIGCYRKSR---QG--PLIISFEGKDQARIEAAIESLFKKFH 125 (133)
Q Consensus 60 ~~~~~l~-~-g~~Es~l~~~L~~l~~~~~~v~igsyp~~~---~~--~v~l~~~~~~~~~~~~~~~~l~~~l~ 125 (133)
+....+. + ++.|..+.+..+++..+|+-..+..+=+.+ .+ .+-+.+.+......=+|++.+.+.++
T Consensus 50 V~~L~ye~y~~ma~~~l~~I~~ea~~r~~l~~v~i~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~id~lK 122 (135)
T 4ap8_A 50 VISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLK 122 (135)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHHHHHHSCEEEEEEEEECEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecchHHHHHHHHHHHHHHHhcCCcceeehhhcccccCCCeEEEEEEEccCHHHHHHHHHHHHHHHh
Confidence 4344444 4 889999999999999999733333332211 22 35666777777665566666666655
No 83
>3ngk_A Propanediol utilization protein PDUA; BMC shell protein, carboxysome, unknown FU; 2.26A {Salmonella enterica subsp}
Probab=23.80 E-value=1.5e+02 Score=18.94 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHH
Q 032821 86 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLF 121 (133)
Q Consensus 86 ~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~ 121 (133)
-+|++..|-+.+.+.+.+.++|+ -..+++|.+.-.
T Consensus 36 A~V~lv~~~~~~~G~~~v~v~GD-VsaV~aAv~ag~ 70 (102)
T 3ngk_A 36 ANVMLVGYEKIGSGLVTVIVRGD-VGAVKAATDAGA 70 (102)
T ss_dssp SSCEEEEEEECSTTEEEEEEEEC-HHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCcEEEEEEEEe-HHHHHHHHHHHH
Confidence 49999999776777788888874 334444444433
No 84
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase TA0507 thermoplasma acidophilum, structural genomics, PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Probab=23.36 E-value=2.3e+02 Score=20.96 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.2
Q ss_pred CceEEEccccCC-CcEEEEEEecCHHHHHHHHHHHHHHhcCC
Q 032821 87 DLHIGCYRKSRQ-GPLIISFEGKDQARIEAAIESLFKKFHRG 127 (133)
Q Consensus 87 ~v~igsyp~~~~-~~v~l~~~~~~~~~~~~~~~~l~~~l~~~ 127 (133)
.+.+++|...+. .++-+..-+.|.+.++++...+.+.|+++
T Consensus 64 ~i~~~~Ysglr~~aDlm~w~~~~~~~~Lq~~~~~l~~~lg~~ 105 (244)
T 3dtz_A 64 YINFHIYRSYRTDSDVIFWYSSRNPDLMILAKERVQASMRPI 105 (244)
T ss_dssp EEEEEEEEESSTTCSEEEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEEeeCCCccEEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 577888865443 46899999999999999999998888764
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=22.94 E-value=1.3e+02 Score=18.17 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=12.1
Q ss_pred EEEe-cCChhhhhHHHHHHhhhCCCc
Q 032821 64 SLTT-NLSDLEAAQPLSKLCLEFPDL 88 (133)
Q Consensus 64 ~l~~-g~~Es~l~~~L~~l~~~~~~v 88 (133)
+|++ |++...=++.|.++-..+..|
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v 35 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPI 35 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3443 555444444555554455433
No 86
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=22.45 E-value=1.4e+02 Score=24.55 Aligned_cols=35 Identities=6% Similarity=-0.011 Sum_probs=24.0
Q ss_pred EEccccCCCcEEEEEEe-cCHHHHHHHHHHHHHHhc
Q 032821 91 GCYRKSRQGPLIISFEG-KDQARIEAAIESLFKKFH 125 (133)
Q Consensus 91 gsyp~~~~~~v~l~~~~-~~~~~~~~~~~~l~~~l~ 125 (133)
-.+|+..+..+|+.+++ .+++.++++.+++++.+.
T Consensus 529 lvRpSgTEP~lriy~Ea~~~~e~l~~l~~~~~~~v~ 564 (570)
T 3na5_A 529 AARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVS 564 (570)
T ss_dssp EEEECSSSSEEEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 34555444458999999 788887777766666553
No 87
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=22.29 E-value=2.1e+02 Score=20.04 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=34.4
Q ss_pred hHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCe
Q 032821 75 AQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAF 129 (133)
Q Consensus 75 ~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 129 (133)
++.-+.+....|++++|.--.-..+.--++.+|.|++..+.|.+-..+.--.+.|
T Consensus 41 EDl~Ealv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~F 95 (173)
T 1rlh_A 41 EDLNEIIRTHVPGSKYGIGFSEASGDRLIRYDGNDDDLVKACIENIRRISAGHTF 95 (173)
T ss_dssp HHHHHHTGGGSTTSEEEEEEECCSTTCCEEEEESCHHHHHHHHHHHHHHCCTTEE
T ss_pred HHHHHHHhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEE
Confidence 3333444555689988876542345555788899998877776666554444444
No 88
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.09 E-value=46 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=17.4
Q ss_pred eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821 26 NVIILTATNVTE-LDKEWN-CLIELLRS 51 (133)
Q Consensus 26 ~v~~LPGv~~P~-m~~m~~-~v~p~l~~ 51 (133)
-++.|||- |. -.-.|+ -+.|.|..
T Consensus 146 ~v~~LPG~--P~aa~~~~~~~v~P~l~~ 171 (178)
T 2pjk_A 146 IVYLLPGS--PDAVKLALKELILPEVGH 171 (178)
T ss_dssp EEEEECSC--HHHHHHHHHHTHHHHHHH
T ss_pred EEEECCCC--cHHHHHHHHHHHHHHHHH
Confidence 38999999 96 555665 47787743
No 89
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=22.04 E-value=2.1e+02 Score=19.96 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=32.8
Q ss_pred HhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCee
Q 032821 81 LCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 130 (133)
Q Consensus 81 l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 130 (133)
+....|++++|.--.-..+.--++.+|.|++..+.|.+-..+.--.+.|.
T Consensus 39 lv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 88 (167)
T 1wvq_A 39 LVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFV 88 (167)
T ss_dssp HHTTCTTCEEEEEEECCSTTCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred HhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 34445889888765433455568889999988777766665544444443
No 90
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A
Probab=22.02 E-value=82 Score=20.19 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.4
Q ss_pred cEEEEEEecCHHH
Q 032821 100 PLIISFEGKDQAR 112 (133)
Q Consensus 100 ~v~l~~~~~~~~~ 112 (133)
.++|+++|.|+++
T Consensus 84 ~i~i~aeG~Dee~ 96 (106)
T 3ihs_A 84 MITITTEGSDAEE 96 (106)
T ss_dssp EEEEEEESTTHHH
T ss_pred EEEEEEECcCHHH
Confidence 3789999999864
No 91
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=21.60 E-value=15 Score=18.78 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=8.4
Q ss_pred CccCCCCCceeee
Q 032821 1 MALLPEGTTELLH 13 (133)
Q Consensus 1 mA~vPega~~~l~ 13 (133)
||++|+|.+ +++
T Consensus 12 q~vIPk~~r-~lP 23 (34)
T 2dwf_A 12 QAMIPKGGR-MLP 23 (34)
T ss_dssp HHHCTTCCS-CCS
T ss_pred HhhcCCccc-chH
Confidence 467888876 654
No 92
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=21.14 E-value=1.4e+02 Score=23.59 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=30.2
Q ss_pred HHHHhhhCCCceEEEccccCC------CcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 78 LSKLCLEFPDLHIGCYRKSRQ------GPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 78 L~~l~~~~~~v~igsyp~~~~------~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
+.++..+. ++.|-+ |..+. ....|++.| ..+.+++|.+.|.+.++=
T Consensus 210 IkkIr~eT-Gv~I~F-P~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lLPv 261 (376)
T 3n89_A 210 MPVIERET-TTIISY-PCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLLPI 261 (376)
T ss_dssp HHHHHHHH-TCEEEC-C---------CCEEEEEEES-CHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHhh-CCEEEC-CCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhCCE
Confidence 45565554 777776 64322 246788888 666688999999998873
No 93
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=21.11 E-value=1.5e+02 Score=17.99 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=33.2
Q ss_pred ecCChhhhhHH-------HHHHhhhCCCceEEEccccC---CCcEEEEEEecCHHHHHHHHHHHHHHhcC
Q 032821 67 TNLSDLEAAQP-------LSKLCLEFPDLHIGCYRKSR---QGPLIISFEGKDQARIEAAIESLFKKFHR 126 (133)
Q Consensus 67 ~g~~Es~l~~~-------L~~l~~~~~~v~igsyp~~~---~~~v~l~~~~~~~~~~~~~~~~l~~~l~~ 126 (133)
+-+|.+.+... +++|+++. +++|-...... ...-.+++.| +.+.+++|.+.+.+.+.+
T Consensus 19 i~Ip~~~vG~IIGkgG~~Ik~I~~~t-ga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 19 IMIPASKAGLVIGKGGETIKQLQERA-GVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEECHHHHHHHSCSSSSHHHHHHHHH-TSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred EEEChhhcceEECCCCHHHHHHHHHH-CCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 45555554433 46666654 66666544211 1223466667 666678888888877754
No 94
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=21.04 E-value=2.1e+02 Score=19.78 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=32.7
Q ss_pred HhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCee
Q 032821 81 LCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 130 (133)
Q Consensus 81 l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 130 (133)
+....|++++|.--.-..+.--++.+|.|++..+.|.+-..+.--.+.|.
T Consensus 36 lv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 85 (162)
T 2ekm_A 36 LASSSPHLKFGIAFCEASGKRLIRWDGNDEELIKLAQQTALKIGAGHTFV 85 (162)
T ss_dssp HHTTCSSCEEEEEEECCSTTCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred HhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 34445888888765433455568889999988777766665544444443
No 95
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=20.41 E-value=2.2e+02 Score=19.69 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCee
Q 032821 79 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS 130 (133)
Q Consensus 79 ~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 130 (133)
+.+....|++++|.--.-..+.--++.+|.|++..+.|.+-..+.--.+.|.
T Consensus 32 Ealv~svP~ikFGiAFcEASG~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 83 (161)
T 1vgg_A 32 EALVTAVPGIRFGLAFSEASGKRLVRRSGTDEALVELAVKNLLNLACGHVFL 83 (161)
T ss_dssp HHHHHHSTTCCEEEEEECCSTTCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred HHHhhcCCCCeEEEEEeccCCceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 3344556888887765433455568889999988777766665544444443
No 96
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=20.25 E-value=1.6e+02 Score=18.10 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=28.3
Q ss_pred EEEEe-cCChhhhhHHHHHHhhhCCCce---EEEccccCCCcEEEEEEecCHHHHHHHHHHH
Q 032821 63 KSLTT-NLSDLEAAQPLSKLCLEFPDLH---IGCYRKSRQGPLIISFEGKDQARIEAAIESL 120 (133)
Q Consensus 63 ~~l~~-g~~Es~l~~~L~~l~~~~~~v~---igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l 120 (133)
++|++ +++...=++.|.++-.++..|. |-.-+..+...-.-.++-++.+.+++|.+.+
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 45564 6766665666777766675433 3322221111111223335666556665544
No 97
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=20.19 E-value=1.3e+02 Score=16.88 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=29.0
Q ss_pred EEEe-cCChhhhhHHHHHHhhhCCCce---EEEccccCCCcEEEEEEecCHHHHHHHHHHH
Q 032821 64 SLTT-NLSDLEAAQPLSKLCLEFPDLH---IGCYRKSRQGPLIISFEGKDQARIEAAIESL 120 (133)
Q Consensus 64 ~l~~-g~~Es~l~~~L~~l~~~~~~v~---igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l 120 (133)
+|++ |++.+.=++.|.++-..+..+. +-..+..+...-.-.++-.+.+.+++|.+.+
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 4554 7777666777777766675433 3222221111112233345666666666544
Done!