Query 032822
Match_columns 133
No_of_seqs 223 out of 1152
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.7 3.9E-16 8.4E-21 103.7 8.3 60 1-60 4-63 (73)
2 PF00403 HMA: Heavy-metal-asso 99.6 1.8E-14 3.9E-19 91.5 7.6 56 5-60 1-60 (62)
3 COG2608 CopZ Copper chaperone 99.5 3.3E-13 7.2E-18 89.2 7.9 60 1-60 1-64 (71)
4 KOG4656 Copper chaperone for s 99.0 2.7E-09 5.9E-14 84.2 8.3 67 3-69 8-75 (247)
5 PLN02957 copper, zinc superoxi 98.6 3.9E-07 8.5E-12 72.6 9.8 70 2-71 6-76 (238)
6 PRK10671 copA copper exporting 98.6 2E-07 4.2E-12 85.3 7.9 64 1-66 2-67 (834)
7 TIGR00003 copper ion binding p 98.0 7.8E-05 1.7E-09 43.3 8.2 60 1-60 1-64 (68)
8 COG2217 ZntA Cation transport 97.8 7.6E-05 1.6E-09 68.1 7.6 63 1-64 1-69 (713)
9 PRK10671 copA copper exporting 97.2 0.0013 2.9E-08 60.4 7.6 62 3-64 100-163 (834)
10 KOG0207 Cation transport ATPas 97.2 0.0013 2.8E-08 61.3 7.3 64 3-66 147-215 (951)
11 KOG0207 Cation transport ATPas 96.9 0.0019 4.2E-08 60.2 5.5 61 9-69 2-65 (951)
12 PRK11033 zntA zinc/cadmium/mer 96.4 0.013 2.9E-07 53.6 7.5 57 3-60 54-113 (741)
13 PF02680 DUF211: Uncharacteriz 95.0 0.12 2.6E-06 36.3 6.4 59 2-60 5-71 (95)
14 COG1888 Uncharacterized protei 94.5 0.27 5.9E-06 34.4 7.1 58 3-60 7-73 (97)
15 TIGR02052 MerP mercuric transp 92.9 1.5 3.2E-05 27.5 8.9 58 3-60 24-85 (92)
16 PRK13748 putative mercuric red 88.4 2.7 5.9E-05 36.6 8.0 63 5-67 3-69 (561)
17 PF01883 DUF59: Domain of unkn 86.6 1.4 3.1E-05 28.1 4.0 32 3-34 35-72 (72)
18 cd00371 HMA Heavy-metal-associ 83.9 4 8.7E-05 20.5 7.3 50 9-58 6-57 (63)
19 PF04972 BON: BON domain; Int 75.5 2.6 5.7E-05 26.0 2.2 37 17-54 2-41 (64)
20 PF13732 DUF4162: Domain of un 75.0 16 0.00035 23.5 6.0 39 23-61 26-65 (84)
21 PF14437 MafB19-deam: MafB19-l 74.5 9.1 0.0002 28.8 5.2 40 3-43 101-142 (146)
22 cd04888 ACT_PheB-BS C-terminal 68.6 15 0.00033 22.8 4.7 31 4-34 43-74 (76)
23 PRK11198 LysM domain/BON super 67.2 13 0.00029 27.3 4.7 49 13-61 25-75 (147)
24 PRK10553 assembly protein for 64.9 29 0.00063 23.7 5.7 44 15-58 18-62 (87)
25 PF13291 ACT_4: ACT domain; PD 62.9 20 0.00043 22.9 4.4 30 4-33 50-79 (80)
26 TIGR03406 FeS_long_SufT probab 62.0 14 0.00031 28.3 4.1 34 3-36 114-153 (174)
27 PF03927 NapD: NapD protein; 59.6 27 0.00058 23.2 4.7 31 4-34 41-71 (79)
28 TIGR02945 SUF_assoc FeS assemb 58.5 19 0.00041 24.3 3.9 22 16-37 57-78 (99)
29 PRK11023 outer membrane lipopr 58.2 30 0.00065 26.5 5.4 48 11-58 46-96 (191)
30 PF03927 NapD: NapD protein; 58.0 52 0.0011 21.8 6.1 45 15-60 16-61 (79)
31 KOG3411 40S ribosomal protein 56.3 11 0.00023 28.2 2.4 43 13-58 97-140 (143)
32 TIGR00489 aEF-1_beta translati 55.4 23 0.0005 24.3 3.9 29 7-35 54-83 (88)
33 PF15023 DUF4523: Protein of u 55.0 45 0.00098 25.5 5.6 59 1-59 86-148 (166)
34 PRK00435 ef1B elongation facto 54.5 22 0.00048 24.4 3.7 32 4-35 51-83 (88)
35 cd04920 ACT_AKiii-DAPDC_2 ACT 52.6 53 0.0012 20.3 5.0 49 9-58 9-59 (63)
36 PRK11023 outer membrane lipopr 52.6 67 0.0014 24.6 6.5 46 11-56 124-171 (191)
37 COG4004 Uncharacterized protei 50.1 24 0.00053 24.7 3.3 23 23-45 36-58 (96)
38 PRK10568 periplasmic protein; 48.7 50 0.0011 25.6 5.2 40 10-49 56-97 (203)
39 COG2151 PaaD Predicted metal-s 47.6 40 0.00086 24.1 4.2 32 5-36 52-89 (111)
40 PF01206 TusA: Sulfurtransfera 47.6 67 0.0015 19.9 6.3 53 5-67 2-57 (70)
41 COG2092 EFB1 Translation elong 46.8 37 0.00079 23.5 3.7 33 3-35 50-83 (88)
42 PF02983 Pro_Al_protease: Alph 45.8 49 0.0011 20.9 4.0 21 26-46 22-42 (62)
43 PF13740 ACT_6: ACT domain; PD 45.4 79 0.0017 20.1 6.0 58 2-59 1-65 (76)
44 cd06167 LabA_like LabA_like pr 43.7 34 0.00073 24.2 3.4 29 40-68 103-132 (149)
45 COG1432 Uncharacterized conser 43.5 36 0.00078 25.9 3.7 33 37-69 111-144 (181)
46 TIGR00288 conserved hypothetic 43.4 32 0.00069 26.2 3.3 29 39-67 108-137 (160)
47 PF13192 Thioredoxin_3: Thiore 43.4 50 0.0011 21.0 3.9 13 4-17 3-15 (76)
48 COG1094 Predicted RNA-binding 43.0 48 0.001 26.1 4.3 39 16-55 26-67 (194)
49 cd04877 ACT_TyrR N-terminal AC 42.8 60 0.0013 20.4 4.2 16 17-32 52-67 (74)
50 cd03421 SirA_like_N SirA_like_ 42.6 82 0.0018 19.5 5.2 48 6-63 2-53 (67)
51 PHA00514 dsDNA binding protein 42.3 74 0.0016 22.2 4.7 31 40-70 33-66 (98)
52 PF10934 DUF2634: Protein of u 41.7 46 0.001 23.5 3.8 32 15-46 70-104 (112)
53 PRK10553 assembly protein for 40.4 76 0.0017 21.6 4.5 34 3-36 43-76 (87)
54 PRK14054 methionine sulfoxide 39.8 1.3E+02 0.0027 23.1 6.2 46 13-58 10-77 (172)
55 PF09580 Spore_YhcN_YlaJ: Spor 39.3 1.1E+02 0.0024 22.6 5.7 31 14-44 75-105 (177)
56 PF08002 DUF1697: Protein of u 38.9 1.2E+02 0.0026 22.0 5.7 42 16-58 21-62 (137)
57 cd04887 ACT_MalLac-Enz ACT_Mal 37.7 97 0.0021 19.0 4.5 27 8-34 46-72 (74)
58 cd04878 ACT_AHAS N-terminal AC 37.4 67 0.0014 18.9 3.6 17 16-32 55-71 (72)
59 COG3062 NapD Uncharacterized p 37.2 1.1E+02 0.0023 21.5 4.9 45 14-59 18-63 (94)
60 PF08777 RRM_3: RNA binding mo 37.1 1.4E+02 0.0031 20.7 6.3 56 4-59 2-60 (105)
61 PRK14435 acylphosphatase; Prov 35.9 1.4E+02 0.003 20.1 7.7 66 1-67 1-72 (90)
62 PRK10555 aminoglycoside/multid 35.5 93 0.002 29.9 5.8 44 16-59 159-210 (1037)
63 PRK15127 multidrug efflux syst 35.2 70 0.0015 30.8 4.9 43 17-59 160-210 (1049)
64 PF00352 TBP: Transcription fa 35.1 62 0.0013 21.4 3.4 24 36-59 55-78 (86)
65 COG0425 SirA Predicted redox p 34.4 1.4E+02 0.003 19.7 6.4 55 4-67 6-63 (78)
66 PRK09577 multidrug efflux prot 34.3 1.1E+02 0.0023 29.5 5.9 45 16-60 158-210 (1032)
67 cd04883 ACT_AcuB C-terminal AC 34.0 1.1E+02 0.0024 18.5 6.5 56 5-60 3-65 (72)
68 TIGR00915 2A0602 The (Largely 33.8 73 0.0016 30.7 4.8 44 16-59 159-210 (1044)
69 PF00736 EF1_GNE: EF-1 guanine 33.7 98 0.0021 21.0 4.3 32 4-35 51-84 (89)
70 TIGR01676 GLDHase galactonolac 33.3 71 0.0015 28.8 4.4 36 23-60 110-145 (541)
71 cd06482 ACD_HspB10 Alpha cryst 32.9 43 0.00093 22.7 2.3 22 25-46 15-38 (87)
72 COG2177 FtsX Cell division pro 32.8 1.2E+02 0.0027 25.0 5.5 44 4-60 63-107 (297)
73 smart00653 eIF2B_5 domain pres 32.7 1E+02 0.0022 21.9 4.3 41 17-59 36-76 (110)
74 PF10006 DUF2249: Uncharacteri 32.5 1.3E+02 0.0028 18.8 5.8 52 9-69 6-60 (69)
75 PF14535 AMP-binding_C_2: AMP- 32.0 1.6E+02 0.0034 19.7 5.1 55 17-71 7-83 (96)
76 smart00749 BON bacterial OsmY 31.7 1.1E+02 0.0023 17.6 4.8 41 17-57 2-45 (62)
77 cd03309 CmuC_like CmuC_like. P 31.2 68 0.0015 26.6 3.7 42 8-50 215-267 (321)
78 PRK14440 acylphosphatase; Prov 31.0 1.7E+02 0.0037 19.7 7.5 65 1-66 2-72 (90)
79 PF12971 NAGLU_N: Alpha-N-acet 30.4 1.6E+02 0.0034 19.6 4.8 38 28-66 30-72 (86)
80 PF01936 NYN: NYN domain; Int 30.4 42 0.00091 23.3 2.1 30 38-67 97-127 (146)
81 PF00013 KH_1: KH domain syndr 30.3 75 0.0016 19.0 3.0 36 19-57 21-58 (60)
82 TIGR03027 pepcterm_export puta 29.2 1.2E+02 0.0027 22.3 4.5 55 6-60 39-109 (165)
83 cd06475 ACD_HspB1_like Alpha c 29.0 62 0.0013 21.5 2.6 22 25-46 17-40 (86)
84 PF00873 ACR_tran: AcrB/AcrD/A 28.9 1.5E+02 0.0032 28.2 6.0 44 15-58 61-108 (1021)
85 PRK10743 heat shock protein Ib 28.7 52 0.0011 24.1 2.4 16 31-46 60-75 (137)
86 cd06477 ACD_HspB3_Like Alpha c 28.4 58 0.0013 21.8 2.4 22 25-46 14-37 (83)
87 cd06471 ACD_LpsHSP_like Group 28.4 60 0.0013 21.4 2.5 23 25-47 17-41 (93)
88 cd00292 EF1B Elongation factor 28.4 1E+02 0.0022 21.0 3.6 30 7-36 54-84 (88)
89 PRK00166 apaH diadenosine tetr 28.1 2E+02 0.0043 23.4 5.9 47 6-60 4-56 (275)
90 PRK11597 heat shock chaperone 27.8 53 0.0012 24.3 2.3 22 25-46 50-73 (142)
91 cd06497 ACD_alphaA-crystallin_ 27.2 66 0.0014 21.4 2.5 21 26-46 18-40 (86)
92 COG3643 Glutamate formiminotra 26.9 75 0.0016 26.3 3.1 56 1-58 1-64 (302)
93 PRK14424 acylphosphatase; Prov 26.4 2.2E+02 0.0047 19.5 7.8 66 1-67 6-77 (94)
94 PF03958 Secretin_N: Bacterial 26.0 1E+02 0.0022 19.5 3.2 28 31-58 47-75 (82)
95 PF13241 NAD_binding_7: Putati 25.9 82 0.0018 21.3 2.8 38 32-69 1-40 (103)
96 cd06470 ACD_IbpA-B_like Alpha- 25.8 71 0.0015 21.2 2.5 22 25-46 18-41 (90)
97 COG0841 AcrB Cation/multidrug 25.6 1.9E+02 0.0041 28.1 6.0 44 15-58 62-113 (1009)
98 TIGR03665 arCOG04150 arCOG0415 25.2 1.7E+02 0.0036 22.0 4.6 39 18-57 18-57 (172)
99 PRK11018 hypothetical protein; 25.1 2E+02 0.0044 18.6 5.6 49 4-61 9-60 (78)
100 cd06476 ACD_HspB2_like Alpha c 25.0 74 0.0016 21.1 2.4 22 26-47 15-38 (83)
101 TIGR02159 PA_CoA_Oxy4 phenylac 24.9 1.2E+02 0.0027 22.4 3.8 51 4-60 27-87 (146)
102 PRK15078 polysaccharide export 24.5 1.9E+02 0.0042 24.6 5.4 56 5-60 133-202 (379)
103 cd06481 ACD_HspB9_like Alpha c 24.5 75 0.0016 21.2 2.4 21 26-46 15-37 (87)
104 PRK05528 methionine sulfoxide 24.4 3.1E+02 0.0067 20.6 6.2 46 13-58 8-70 (156)
105 cd06478 ACD_HspB4-5-6 Alpha-cr 24.1 86 0.0019 20.6 2.6 21 26-46 15-37 (83)
106 cd06479 ACD_HspB7_like Alpha c 24.0 80 0.0017 21.0 2.4 21 26-46 16-38 (81)
107 COG0071 IbpA Molecular chapero 23.9 73 0.0016 23.0 2.4 23 25-47 57-81 (146)
108 PRK10503 multidrug efflux syst 23.5 1.5E+02 0.0032 28.7 4.9 43 17-59 169-220 (1040)
109 PF05193 Peptidase_M16_C: Pept 23.4 95 0.0021 21.4 2.9 20 39-58 20-39 (184)
110 PRK10509 bacterioferritin-asso 23.1 40 0.00088 21.5 0.8 21 6-26 33-53 (64)
111 PRK09579 multidrug efflux prot 22.6 1.7E+02 0.0036 28.2 5.1 44 16-59 158-210 (1017)
112 cd06464 ACD_sHsps-like Alpha-c 22.6 83 0.0018 19.7 2.3 23 25-47 14-38 (88)
113 PF08712 Nfu_N: Scaffold prote 22.5 1.8E+02 0.0039 19.5 4.0 41 17-59 37-79 (87)
114 cd04910 ACT_AK-Ectoine_1 ACT d 22.4 2.3E+02 0.005 18.4 5.8 55 9-64 10-69 (71)
115 cd06498 ACD_alphaB-crystallin_ 22.3 93 0.002 20.6 2.5 22 25-46 14-37 (84)
116 PRK06719 precorrin-2 dehydroge 22.0 1.6E+02 0.0036 21.6 4.0 37 32-68 7-45 (157)
117 COG4492 PheB ACT domain-contai 21.9 1.2E+02 0.0026 22.8 3.2 66 2-67 71-149 (150)
118 cd04879 ACT_3PGDH-like ACT_3PG 21.9 1E+02 0.0022 17.9 2.5 18 16-33 52-69 (71)
119 TIGR01470 cysG_Nterm siroheme 21.6 1.7E+02 0.0037 22.5 4.2 39 32-70 3-43 (205)
120 PRK10503 multidrug efflux syst 21.6 2.5E+02 0.0055 27.1 6.0 43 15-57 72-118 (1040)
121 cd00298 ACD_sHsps_p23-like Thi 21.5 94 0.002 18.3 2.2 21 26-46 14-36 (80)
122 TIGR02024 FtcD glutamate formi 21.5 4E+02 0.0087 22.3 6.5 54 1-56 1-62 (298)
123 TIGR00914 2A0601 heavy metal e 21.4 1.3E+02 0.0027 29.0 4.0 46 14-59 698-753 (1051)
124 PRK06418 transcription elongat 21.4 3.8E+02 0.0082 20.5 6.3 63 5-67 9-98 (166)
125 PRK07334 threonine dehydratase 21.3 3.7E+02 0.008 22.7 6.5 62 4-65 327-402 (403)
126 PHA03075 glutaredoxin-like pro 21.2 3.4E+02 0.0074 19.9 5.8 67 1-67 1-76 (123)
127 COG1254 AcyP Acylphosphatases 21.1 2.8E+02 0.0062 18.9 7.4 56 2-58 4-64 (92)
128 PF04805 Pox_E10: E10-like pro 21.0 76 0.0016 21.0 1.7 18 9-26 15-32 (70)
129 PF07338 DUF1471: Protein of u 21.0 1.2E+02 0.0026 18.7 2.7 29 39-67 6-41 (56)
130 cd06526 metazoan_ACD Alpha-cry 20.8 92 0.002 20.1 2.2 21 26-46 15-37 (83)
131 PRK09579 multidrug efflux prot 20.7 2.7E+02 0.006 26.8 6.1 43 15-57 63-109 (1017)
132 PRK13625 bis(5'-nucleosyl)-tet 20.6 2.7E+02 0.006 21.7 5.3 49 9-59 8-63 (245)
133 cd06472 ACD_ScHsp26_like Alpha 20.6 1.2E+02 0.0025 20.0 2.7 23 25-47 16-41 (92)
134 TIGR03028 EpsE polysaccharide 20.5 2.6E+02 0.0055 21.9 5.0 55 5-60 39-109 (239)
135 PF13738 Pyr_redox_3: Pyridine 20.4 82 0.0018 22.9 2.1 35 35-69 164-200 (203)
136 COG0841 AcrB Cation/multidrug 20.4 2.6E+02 0.0057 27.2 5.9 45 15-59 156-209 (1009)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.67 E-value=3.9e-16 Score=103.65 Aligned_cols=60 Identities=37% Similarity=0.657 Sum_probs=57.9
Q ss_pred CeeEEEEEeccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC
Q 032822 1 MKKAVLKLGVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC 60 (133)
Q Consensus 1 MkkvvlkV~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g 60 (133)
|+..+++|+|||++|+++|++.|+.+.||.++.+|+++++|||.|++||..|+++|++.+
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTG 63 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999999999999999999999977
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.56 E-value=1.8e-14 Score=91.50 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=52.9
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec---CCHHHHHHHHHhcC
Q 032822 5 VLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD---IDPVSIVSKLRKLC 60 (133)
Q Consensus 5 vlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~---vdp~~lv~~Lrk~g 60 (133)
+|+| +|+|++|+++|+++|++++||.++.+|+.+++++|.++ +++.+|.++|+++|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 6899 99999999999999999999999999999999999998 45699999999988
No 3
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=89.22 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=54.8
Q ss_pred CeeEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEE--ee-cCCHHHHHHHHHhcC
Q 032822 1 MKKAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTV--IG-DIDPVSIVSKLRKLC 60 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV--~G-~vdp~~lv~~Lrk~g 60 (133)
|+++.|+| +|+|++|+.+|+++|.+++||.++.+|++.++++| .+ .++..+|+++|.++|
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcC
Confidence 78899999 99999999999999999999999999999965444 55 489999999999999
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.97 E-value=2.7e-09 Score=84.20 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=62.5
Q ss_pred eEEEEEeccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC-CeeEeecCC
Q 032822 3 KAVLKLGVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC-HTEILSVGP 69 (133)
Q Consensus 3 kvvlkV~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g-~aeivs~~p 69 (133)
+++|-|.|||++|+..|+..|..++||++|++|++++.|.|.+.+.+..|.++|+..| .|.|.-.|-
T Consensus 8 ~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~ 75 (247)
T KOG4656|consen 8 EAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGK 75 (247)
T ss_pred eEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCc
Confidence 4789999999999999999999999999999999999999999999999999999999 887776553
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=98.60 E-value=3.9e-07 Score=72.61 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=63.9
Q ss_pred eeEEEEEeccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC-CeeEeecCCCC
Q 032822 2 KKAVLKLGVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC-HTEILSVGPAK 71 (133)
Q Consensus 2 kkvvlkV~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g-~aeivs~~p~k 71 (133)
+++.|.++|+|+.|+.+|.++|..++||.++.+|+..++++|.+..++..++.+|++.| .+++++.++..
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 46788899999999999999999999999999999999999998889999999999999 78888876654
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.56 E-value=2e-07 Score=85.32 Aligned_cols=64 Identities=11% Similarity=0.226 Sum_probs=57.9
Q ss_pred CeeEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC-CeeEee
Q 032822 1 MKKAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC-HTEILS 66 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g-~aeivs 66 (133)
|++++|+| +|+|++|..+|+++|.+++||.++.+|++ +.+|.+..++..+..++++.| .+++.+
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 46789999 99999999999999999999999999994 566778899999999999999 788765
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=98.02 E-value=7.8e-05 Score=43.28 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=51.2
Q ss_pred CeeEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec---CCHHHHHHHHHhcC
Q 032822 1 MKKAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD---IDPVSIVSKLRKLC 60 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~---vdp~~lv~~Lrk~g 60 (133)
|+++.+.| +|+|..|...+.+.++...|+.+..+++..+.+.+..+ .+...+...+...|
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 64 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAG 64 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcC
Confidence 66778999 99999999999999999999999999999998888742 57777777776655
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.78 E-value=7.6e-05 Score=68.06 Aligned_cols=63 Identities=21% Similarity=0.422 Sum_probs=56.0
Q ss_pred CeeEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec---CC-HHHHHHHHHhcC-CeeE
Q 032822 1 MKKAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD---ID-PVSIVSKLRKLC-HTEI 64 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~---vd-p~~lv~~Lrk~g-~aei 64 (133)
+.++.|.| +|||..|..+|+ +|.+++||.++.+++.+.+++|..+ .+ +..+..+++..| .+..
T Consensus 1 ~~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 1 LRETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred CceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 35678999 999999999999 9999999999999999999999865 56 789999999999 5544
No 9
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.18 E-value=0.0013 Score=60.42 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=54.8
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC-CeeE
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC-HTEI 64 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g-~aei 64 (133)
.+.|.+ +|+|.+|...+.+.+..++||.++.+++..+++.|.+..++..+...++..| .+.+
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~ 163 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEA 163 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccc
Confidence 356888 9999999999999999999999999999999988887788999989999888 5443
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0013 Score=61.25 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=58.0
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec---CCHHHHHHHHHhcC-CeeEee
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD---IDPVSIVSKLRKLC-HTEILS 66 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~---vdp~~lv~~Lrk~g-~aeivs 66 (133)
+++|.| +|.|..|..+|.+.|.+++||.+++++..++++.|.-+ ..|-+++..|...| .+.+..
T Consensus 147 ~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~ 215 (951)
T KOG0207|consen 147 KIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRP 215 (951)
T ss_pred cEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeee
Confidence 678999 99999999999999999999999999999999999876 88999999999988 555544
No 11
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0019 Score=60.18 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=55.6
Q ss_pred eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcC-CeeEeecCC
Q 032822 9 GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLC-HTEILSVGP 69 (133)
Q Consensus 9 ~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g-~aeivs~~p 69 (133)
+|+|..|.+.|.++++..+||.++.+++.++..+|..+ ++++.|.++|...| .+.+++...
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~ 65 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSE 65 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCc
Confidence 79999999999999999999999999999998877765 99999999999999 888887543
No 12
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.35 E-value=0.013 Score=53.57 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=48.0
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcC
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLC 60 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g 60 (133)
++.+.+ +|+|.+|..++.+++..++||.++.+++.++++.+..+ .+ ..+...++..|
T Consensus 54 r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~~~G 113 (741)
T PRK11033 54 RYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQKAG 113 (741)
T ss_pred eEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHHhcc
Confidence 467888 99999999999999999999999999999998887643 23 56667777777
No 13
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=95.01 E-value=0.12 Score=36.27 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=41.2
Q ss_pred eeEEEEEeccChhhHHHHHHHHhcCCCcceEEE-----EeCCC--EEEEeec-CCHHHHHHHHHhcC
Q 032822 2 KKAVLKLGVHDDKEKKKAMKTVSGLAGVDSISM-----DMKEK--KLTVIGD-IDPVSIVSKLRKLC 60 (133)
Q Consensus 2 kkvvlkV~M~C~~C~~kI~kal~~l~GV~sv~v-----D~~~~--kvtV~G~-vdp~~lv~~Lrk~g 60 (133)
+.++|.|--.-+--.-.+-++|++++||..|++ |.++. ++||.|+ +|.+.|.++|.+.|
T Consensus 5 rRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~G 71 (95)
T PF02680_consen 5 RRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELG 71 (95)
T ss_dssp EEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT
T ss_pred eEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcC
Confidence 356676622223334556778999999987764 44443 7888997 99999999999988
No 14
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.55 E-value=0.27 Score=34.41 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=41.0
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEE-----EeCC--CEEEEeec-CCHHHHHHHHHhcC
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISM-----DMKE--KKLTVIGD-IDPVSIVSKLRKLC 60 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~v-----D~~~--~kvtV~G~-vdp~~lv~~Lrk~g 60 (133)
.++|.| --|-+-----+-+.|++++||+.|++ |.++ =++||.|+ +|-+.|...|.+.|
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~G 73 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELG 73 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcC
Confidence 345555 22333344456678899999887654 4444 38899996 99999999999988
No 15
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.87 E-value=1.5 Score=27.54 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=43.6
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEee---cCCHHHHHHHHHhcC
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIG---DIDPVSIVSKLRKLC 60 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G---~vdp~~lv~~Lrk~g 60 (133)
++.+.+ +++|..|...+...+....|+....++.....+.+.. ..+...+...++..|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAG 85 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcC
Confidence 455667 8999999999999999999998888888877655542 246666655555555
No 16
>PRK13748 putative mercuric reductase; Provisional
Probab=88.38 E-value=2.7 Score=36.61 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=48.2
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEee--cCCHHHHHHHHHhcC-CeeEeec
Q 032822 5 VLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIG--DIDPVSIVSKLRKLC-HTEILSV 67 (133)
Q Consensus 5 vlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G--~vdp~~lv~~Lrk~g-~aeivs~ 67 (133)
.+.+ +|+|.+|..++...+..++|+....+++..+.+.+.. ..+...+...++..+ .++..+.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence 4667 8999999999999999999999999999888777763 356666766666666 4444433
No 17
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=86.59 E-value=1.4 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=22.0
Q ss_pred eEEEEEeccChhh------HHHHHHHHhcCCCcceEEE
Q 032822 3 KAVLKLGVHDDKE------KKKAMKTVSGLAGVDSISM 34 (133)
Q Consensus 3 kvvlkV~M~C~~C------~~kI~kal~~l~GV~sv~v 34 (133)
++.|.+.+...+| +..|+.+|+.++||.+|+|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3556666665554 4788999999999999875
No 18
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=83.89 E-value=4 Score=20.54 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHh
Q 032822 9 GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRK 58 (133)
Q Consensus 9 ~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk 58 (133)
+++|..|...+...+....|+....+.+....+.+... .+...+...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIED 57 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 78899999999988888899877777776666555533 355555444443
No 19
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=75.49 E-value=2.6 Score=26.00 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHhc---CCCcceEEEEeCCCEEEEeecCCHHHHHH
Q 032822 17 KKAMKTVSG---LAGVDSISMDMKEKKLTVIGDIDPVSIVS 54 (133)
Q Consensus 17 ~kI~kal~~---l~GV~sv~vD~~~~kvtV~G~vdp~~lv~ 54 (133)
.+|+.+|.. +++- ++.+...++.|++.|.++......
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s~~~~~ 41 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVPSQEQRD 41 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEESSCHHHH
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCcHHHHHH
Confidence 356666666 4444 789999999999999874443333
No 20
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=75.00 E-value=16 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.0
Q ss_pred HhcCCCcceEEEEeCC-CEEEEeecCCHHHHHHHHHhcCC
Q 032822 23 VSGLAGVDSISMDMKE-KKLTVIGDIDPVSIVSKLRKLCH 61 (133)
Q Consensus 23 l~~l~GV~sv~vD~~~-~kvtV~G~vdp~~lv~~Lrk~g~ 61 (133)
|..++||.++..+... -.+.+....+...|+..|...|.
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~ 65 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI 65 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC
Confidence 8888999999876544 36667777889999999998774
No 21
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=74.46 E-value=9.1 Score=28.82 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=32.3
Q ss_pred eEEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeC-CCEEEE
Q 032822 3 KAVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMK-EKKLTV 43 (133)
Q Consensus 3 kvvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~-~~kvtV 43 (133)
.+++.| .-.|+.|..-|...+.++ |+.++.|-.. ++++.+
T Consensus 101 ~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 101 SMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred eEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 577888 668999999999888876 9999998877 665543
No 22
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.61 E-value=15 Score=22.78 Aligned_cols=31 Identities=6% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEEeccChh-hHHHHHHHHhcCCCcceEEE
Q 032822 4 AVLKLGVHDDK-EKKKAMKTVSGLAGVDSISM 34 (133)
Q Consensus 4 vvlkV~M~C~~-C~~kI~kal~~l~GV~sv~v 34 (133)
+.|.+..+... --..++++|.+++||.+|.+
T Consensus 43 i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 43 VTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 34444445554 66788888888888888764
No 23
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=67.17 E-value=13 Score=27.31 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhcCC-CcceEEEEeCCCEEEEeecCCHHHHHHHHHh-cCC
Q 032822 13 DKEKKKAMKTVSGLA-GVDSISMDMKEKKLTVIGDIDPVSIVSKLRK-LCH 61 (133)
Q Consensus 13 ~~C~~kI~kal~~l~-GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk-~g~ 61 (133)
+.-+..|.++|++.. +...+.|...++.|++.|.+.......++.. ++.
T Consensus 25 ~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~s~~~~~~~~~aa~~ 75 (147)
T PRK11198 25 EDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKILLAVGN 75 (147)
T ss_pred HHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeCCHHHHHHHHHHhcc
Confidence 445678888887632 4446678888999999999877777777764 443
No 24
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=64.94 E-value=29 Score=23.69 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCCEEEEeec-CCHHHHHHHHHh
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD-IDPVSIVSKLRK 58 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~-vdp~~lv~~Lrk 58 (133)
=...+.++|..++|++=...|.+++|+.|+=+ -+...+.+.|..
T Consensus 18 ~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~ 62 (87)
T PRK10553 18 RISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIES 62 (87)
T ss_pred HHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHH
Confidence 36788999999999987777887777666532 445545444443
No 25
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=62.90 E-value=20 Score=22.90 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=23.9
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCcceEE
Q 032822 4 AVLKLGVHDDKEKKKAMKTVSGLAGVDSIS 33 (133)
Q Consensus 4 vvlkV~M~C~~C~~kI~kal~~l~GV~sv~ 33 (133)
+.|.|....-.=-..++..|.+++||.+|.
T Consensus 50 ~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 50 ITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 456667777777888999999999998874
No 26
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=62.02 E-value=14 Score=28.33 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=25.5
Q ss_pred eEEEEEeccChhhH------HHHHHHHhcCCCcceEEEEe
Q 032822 3 KAVLKLGVHDDKEK------KKAMKTVSGLAGVDSISMDM 36 (133)
Q Consensus 3 kvvlkV~M~C~~C~------~kI~kal~~l~GV~sv~vD~ 36 (133)
++.+.+.++-.+|. ..|+.+|..++||.+|+|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 45666666665554 55899999999999998765
No 27
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=59.63 E-value=27 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCcceEEE
Q 032822 4 AVLKLGVHDDKEKKKAMKTVSGLAGVDSISM 34 (133)
Q Consensus 4 vvlkV~M~C~~C~~kI~kal~~l~GV~sv~v 34 (133)
+++-+.-...+-.....++|..++||-++++
T Consensus 41 iVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 41 IVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp EEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred EEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 4444555555666666666777777766653
No 28
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=58.49 E-value=19 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCcceEEEEeC
Q 032822 16 KKKAMKTVSGLAGVDSISMDMK 37 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~ 37 (133)
...+..+|..++|++++++++.
T Consensus 57 ~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 57 PGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHHhCCCCceEEEEEE
Confidence 3568889999999999988764
No 29
>PRK11023 outer membrane lipoprotein; Provisional
Probab=58.18 E-value=30 Score=26.53 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=37.0
Q ss_pred cChhhHHHHHHHHhcCCCcc---eEEEEeCCCEEEEeecCCHHHHHHHHHh
Q 032822 11 HDDKEKKKAMKTVSGLAGVD---SISMDMKEKKLTVIGDIDPVSIVSKLRK 58 (133)
Q Consensus 11 ~C~~C~~kI~kal~~l~GV~---sv~vD~~~~kvtV~G~vdp~~lv~~Lrk 58 (133)
.+..-..+|+.+|..-+++. ++++...++.|+++|.++.........+
T Consensus 46 dD~~i~~~V~~aL~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ 96 (191)
T PRK11023 46 DDGTLELRVNNALSKDEQIKKEARINVTAYQGKVLLTGQSPNAELSERAKQ 96 (191)
T ss_pred hhHHHHHHHHHHHhhCcccCcCceEEEEEECCEEEEEEEeCCHHHHHHHHH
Confidence 44556788999998767664 6889999999999999877766555543
No 30
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=58.02 E-value=52 Score=21.75 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCCEEEEee-cCCHHHHHHHHHhcC
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEKKLTVIG-DIDPVSIVSKLRKLC 60 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G-~vdp~~lv~~Lrk~g 60 (133)
=...+.++|..++|++=-..+.+ +++.|+= .-+...+.+.|....
T Consensus 16 ~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i~ 61 (79)
T PF03927_consen 16 RLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAIN 61 (79)
T ss_dssp CHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHHH
Confidence 35788999999999955555555 7666653 356677777776643
No 31
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=56.30 E-value=11 Score=28.21 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHhcCCCcceEEEEeCCC-EEEEeecCCHHHHHHHHHh
Q 032822 13 DKEKKKAMKTVSGLAGVDSISMDMKEK-KLTVIGDIDPVSIVSKLRK 58 (133)
Q Consensus 13 ~~C~~kI~kal~~l~GV~sv~vD~~~~-kvtV~G~vdp~~lv~~Lrk 58 (133)
++|.++|.++|.++ .-|+-+.+.+ ++|=.|.-|-+.|...|+.
T Consensus 97 ~~i~rkvlQ~Le~~---~~ve~hp~gGR~lt~~GqrdldrIa~~i~~ 140 (143)
T KOG3411|consen 97 GGIARKVLQALEKM---GIVEKHPKGGRRLTEQGQRDLDRIAGQIRE 140 (143)
T ss_pred cHHHHHHHHHHHhC---CceeeCCCCcceeCcccchhHHHHHHHHHh
Confidence 45666666666555 4566677665 8888999999999998875
No 32
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=55.39 E-value=23 Score=24.29 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=22.0
Q ss_pred EEeccCh-hhHHHHHHHHhcCCCcceEEEE
Q 032822 7 KLGVHDD-KEKKKAMKTVSGLAGVDSISMD 35 (133)
Q Consensus 7 kV~M~C~-~C~~kI~kal~~l~GV~sv~vD 35 (133)
.+-|..+ +-...+..++++++||+|+++.
T Consensus 54 ~~vv~D~~g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 54 MVVMGDAEGGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred EEEEecCCcChHHHHHHHhcCCCccEEEEE
Confidence 3334333 5568999999999999999874
No 33
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=55.02 E-value=45 Score=25.46 Aligned_cols=59 Identities=17% Similarity=0.315 Sum_probs=42.9
Q ss_pred CeeEEEEE---eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecC-CHHHHHHHHHhc
Q 032822 1 MKKAVLKL---GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDI-DPVSIVSKLRKL 59 (133)
Q Consensus 1 MkkvvlkV---~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~v-dp~~lv~~Lrk~ 59 (133)
|.+||++= +|.=..--+.|...|+.+.-|+||+.-....-|+|-.|+ .+=.-+.|++..
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCC
Confidence 56666654 777766678999999999999999998877766666653 344466666543
No 34
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=54.46 E-value=22 Score=24.38 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=23.6
Q ss_pred EEEEEeccC-hhhHHHHHHHHhcCCCcceEEEE
Q 032822 4 AVLKLGVHD-DKEKKKAMKTVSGLAGVDSISMD 35 (133)
Q Consensus 4 vvlkV~M~C-~~C~~kI~kal~~l~GV~sv~vD 35 (133)
+.+.+-|.+ .+-...+..++++++||+|+++.
T Consensus 51 L~i~~vv~D~~~~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 51 LKLYVIMPDEEGGTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred EEEEEEEEcCCcCcHHHHHHHhccCCCcEEEEE
Confidence 334444444 47778999999999999999874
No 35
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.65 E-value=53 Score=20.25 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred ec-cChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEe-ecCCHHHHHHHHHh
Q 032822 9 GV-HDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVI-GDIDPVSIVSKLRK 58 (133)
Q Consensus 9 ~M-~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~-G~vdp~~lv~~Lrk 58 (133)
+| ...+...++.++|+.. ||.-+........+++. -+-|...++.+|++
T Consensus 9 g~~~~~gv~~~~~~~L~~~-~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~ 59 (63)
T cd04920 9 GIRSLLHKLGPALEVFGKK-PVHLVSQAANDLNLTFVVDEDQADGLCARLHF 59 (63)
T ss_pred CcccCccHHHHHHHHHhcC-CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHH
Confidence 56 6788999999999874 88888777766667553 33555666666654
No 36
>PRK11023 outer membrane lipoprotein; Provisional
Probab=52.62 E-value=67 Score=24.60 Aligned_cols=46 Identities=9% Similarity=0.102 Sum_probs=34.1
Q ss_pred cChhhHHHHHHHHhcCCCcc--eEEEEeCCCEEEEeecCCHHHHHHHH
Q 032822 11 HDDKEKKKAMKTVSGLAGVD--SISMDMKEKKLTVIGDIDPVSIVSKL 56 (133)
Q Consensus 11 ~C~~C~~kI~kal~~l~GV~--sv~vD~~~~kvtV~G~vdp~~lv~~L 56 (133)
.+..-..+|+.+|..-+++. +|.|...++.|++.|.++....-.+.
T Consensus 124 ~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~~~a~ 171 (191)
T PRK11023 124 KDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREAKAAA 171 (191)
T ss_pred CcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHHHHHH
Confidence 34557889999998777776 55666678999999998876654443
No 37
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.06 E-value=24 Score=24.72 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.3
Q ss_pred HhcCCCcceEEEEeCCCEEEEee
Q 032822 23 VSGLAGVDSISMDMKEKKLTVIG 45 (133)
Q Consensus 23 l~~l~GV~sv~vD~~~~kvtV~G 45 (133)
+..++|++.|++..+++++-|.+
T Consensus 36 vas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 36 VASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred EEecCCceEEEEecccceEEEec
Confidence 45678999999999999999987
No 38
>PRK10568 periplasmic protein; Provisional
Probab=48.69 E-value=50 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccChhhHHHHHHHHhcCCCcc--eEEEEeCCCEEEEeecCCH
Q 032822 10 VHDDKEKKKAMKTVSGLAGVD--SISMDMKEKKLTVIGDIDP 49 (133)
Q Consensus 10 M~C~~C~~kI~kal~~l~GV~--sv~vD~~~~kvtV~G~vdp 49 (133)
+.+..-..+|..+|..-+++. .|+|...++.|++.|.++.
T Consensus 56 ~~D~~I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 56 MDDSAITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCC
Confidence 456677889988988766665 6788889999999999763
No 39
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=47.61 E-value=40 Score=24.15 Aligned_cols=32 Identities=9% Similarity=0.314 Sum_probs=23.8
Q ss_pred EEEEeccChhh------HHHHHHHHhcCCCcceEEEEe
Q 032822 5 VLKLGVHDDKE------KKKAMKTVSGLAGVDSISMDM 36 (133)
Q Consensus 5 vlkV~M~C~~C------~~kI~kal~~l~GV~sv~vD~ 36 (133)
.+++.++-.+| ...++.+|..+.||++++|++
T Consensus 52 ~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l 89 (111)
T COG2151 52 KVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVEL 89 (111)
T ss_pred EEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEEEE
Confidence 34445555555 578999999999999997754
No 40
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=47.58 E-value=67 Score=19.95 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=37.1
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcCCeeEeec
Q 032822 5 VLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLCHTEILSV 67 (133)
Q Consensus 5 vlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g~aeivs~ 67 (133)
+|.+ |+.|....-++.++|..++.= ..+.|..+ ....+|...++..|+ ++++.
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~~~g~-~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCEENGY-EVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHHHHTE-EEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHHHCCC-EEEEE
Confidence 5677 899999999999999998532 34555544 556778888888884 44443
No 41
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=46.76 E-value=37 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=24.8
Q ss_pred eEEEEEeccC-hhhHHHHHHHHhcCCCcceEEEE
Q 032822 3 KAVLKLGVHD-DKEKKKAMKTVSGLAGVDSISMD 35 (133)
Q Consensus 3 kvvlkV~M~C-~~C~~kI~kal~~l~GV~sv~vD 35 (133)
.+.|.|-|.. .|--..+..+|+.++||+++++-
T Consensus 50 al~l~vvv~D~Eg~td~~ee~l~~vegV~sveve 83 (88)
T COG2092 50 ALKLYVVVEDKEGGTDALEEALEEVEGVESVEVE 83 (88)
T ss_pred eEEEEEEEcccccCcHHHHHHHhhccCcceEEEE
Confidence 3455555543 46678999999999999999864
No 42
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=45.81 E-value=49 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.2
Q ss_pred CCCcceEEEEeCCCEEEEeec
Q 032822 26 LAGVDSISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~sv~vD~~~~kvtV~G~ 46 (133)
-.++.++.+|..+++|+|+.+
T Consensus 22 ~~~~~~WyvD~~tn~VVV~a~ 42 (62)
T PF02983_consen 22 PVAVTSWYVDPRTNKVVVTAD 42 (62)
T ss_dssp GGCEEEEEEECCCTEEEEEEE
T ss_pred CCCcceEEEeCCCCeEEEEEC
Confidence 458999999999999999864
No 43
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=45.37 E-value=79 Score=20.14 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=37.0
Q ss_pred eeEEEEE-eccChhhHHHHHHHHhcCCC-cceEEEEeCCCEEE----Eeec-CCHHHHHHHHHhc
Q 032822 2 KKAVLKL-GVHDDKEKKKAMKTVSGLAG-VDSISMDMKEKKLT----VIGD-IDPVSIVSKLRKL 59 (133)
Q Consensus 2 kkvvlkV-~M~C~~C~~kI~kal~~l~G-V~sv~vD~~~~kvt----V~G~-vdp~~lv~~Lrk~ 59 (133)
+.+++.| |....|....+.++|....+ |..++...-.+.++ |.+. -+...|.++|+++
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 3567888 99999999999999999754 44555444455333 3333 3556677777764
No 44
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=43.68 E-value=34 Score=24.19 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.2
Q ss_pred EEEEeecCCHHHHHHHHHhcC-CeeEeecC
Q 032822 40 KLTVIGDIDPVSIVSKLRKLC-HTEILSVG 68 (133)
Q Consensus 40 kvtV~G~vdp~~lv~~Lrk~g-~aeivs~~ 68 (133)
-|.|+||-|-..++..||..| .+.+++..
T Consensus 103 ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 103 IVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 566789999999999999999 88888774
No 45
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=43.54 E-value=36 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCCEEEEeecCCHHHHHHHHHhcC-CeeEeecCC
Q 032822 37 KEKKLTVIGDIDPVSIVSKLRKLC-HTEILSVGP 69 (133)
Q Consensus 37 ~~~kvtV~G~vdp~~lv~~Lrk~g-~aeivs~~p 69 (133)
-+.-|.++||.|-.-++++++..| .+.+++.++
T Consensus 111 ~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 111 VDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred CCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCC
Confidence 344677789999999999999888 999999887
No 46
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=43.42 E-value=32 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.6
Q ss_pred CEEEEeecCCHHHHHHHHHhcC-CeeEeec
Q 032822 39 KKLTVIGDIDPVSIVSKLRKLC-HTEILSV 67 (133)
Q Consensus 39 ~kvtV~G~vdp~~lv~~Lrk~g-~aeivs~ 67 (133)
.-+.|+||-|-..|+.+||..| .+..+++
T Consensus 108 ~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 108 AVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred EEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 3677789999999999999988 7888875
No 47
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=43.37 E-value=50 Score=21.03 Aligned_cols=13 Identities=0% Similarity=-0.251 Sum_probs=9.6
Q ss_pred EEEEEeccChhhHH
Q 032822 4 AVLKLGVHDDKEKK 17 (133)
Q Consensus 4 vvlkV~M~C~~C~~ 17 (133)
+.+ ++..|..|..
T Consensus 3 I~v-~~~~C~~C~~ 15 (76)
T PF13192_consen 3 IKV-FSPGCPYCPE 15 (76)
T ss_dssp EEE-ECSSCTTHHH
T ss_pred EEE-eCCCCCCcHH
Confidence 444 6788999984
No 48
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=42.97 E-value=48 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCEEEEeec---CCHHHHHHH
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEKKLTVIGD---IDPVSIVSK 55 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~---vdp~~lv~~ 55 (133)
...+.+.|....|+ .+.+|.+++.|+|... .||..+..+
T Consensus 26 ~g~v~k~ie~~~~~-~~~iD~~~~~V~i~~~~~t~Dp~~~~ka 67 (194)
T COG1094 26 WGEVKKAIEEKTGV-KLRIDSKTGSVTIRTTRKTEDPLALLKA 67 (194)
T ss_pred cccchHHHHhhcCe-EEEEECCCCeEEEEecCCCCChHHHHHH
Confidence 35677888887777 7889999999999765 577665544
No 49
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=42.77 E-value=60 Score=20.43 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=7.9
Q ss_pred HHHHHHHhcCCCcceE
Q 032822 17 KKAMKTVSGLAGVDSI 32 (133)
Q Consensus 17 ~kI~kal~~l~GV~sv 32 (133)
..+.+.|.+++||.+|
T Consensus 52 ~~li~~L~~i~gV~~V 67 (74)
T cd04877 52 QTLMPEIRRIDGVEDV 67 (74)
T ss_pred HHHHHHHhCCCCceEE
Confidence 4444455555555444
No 50
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.60 E-value=82 Score=19.50 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=32.9
Q ss_pred EEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcC-Cee
Q 032822 6 LKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLC-HTE 63 (133)
Q Consensus 6 lkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g-~ae 63 (133)
|.+ |+.|..=.-+++++| .+..= +.+.|..+ .....|..-+++.| ..+
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~~~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDNEVAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcChhHHHHHHHHHHHcCCEEE
Confidence 445 889999999999999 65432 23444443 45578888888888 443
No 51
>PHA00514 dsDNA binding protein
Probab=42.30 E-value=74 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=25.1
Q ss_pred EEEEeecCCHHHHHHHHHhc--C-CeeEeecCCC
Q 032822 40 KLTVIGDIDPVSIVSKLRKL--C-HTEILSVGPA 70 (133)
Q Consensus 40 kvtV~G~vdp~~lv~~Lrk~--g-~aeivs~~p~ 70 (133)
..|+.|++..+.-...|.+. + .++++|++|-
T Consensus 33 ~~Tl~GNLtiEqAQ~e~~k~~k~~pvqVvsVEpn 66 (98)
T PHA00514 33 EQTLLGNLTIEQAQKELSKQYKHGPVQVVSVEPN 66 (98)
T ss_pred cceeecceeHHHHHHHHhhcccCCCeeEEEecCC
Confidence 34667999999999999865 4 8999999764
No 52
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=41.65 E-value=46 Score=23.47 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=25.3
Q ss_pred hHHHHHHHH---hcCCCcceEEEEeCCCEEEEeec
Q 032822 15 EKKKAMKTV---SGLAGVDSISMDMKEKKLTVIGD 46 (133)
Q Consensus 15 C~~kI~kal---~~l~GV~sv~vD~~~~kvtV~G~ 46 (133)
-.+.|+.|| ..+.+|+++++....+.+.|..+
T Consensus 70 i~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~v~f~ 104 (112)
T PF10934_consen 70 IEREIEEALLQDPRITSVENFSFEWEGDSLYVSFT 104 (112)
T ss_pred HHHHHHHHHhcCCCcceEEEEEEEEECCEEEEEEE
Confidence 467888888 45678888899999888877654
No 53
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=40.40 E-value=76 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=26.6
Q ss_pred eEEEEEeccChhhHHHHHHHHhcCCCcceEEEEe
Q 032822 3 KAVLKLGVHDDKEKKKAMKTVSGLAGVDSISMDM 36 (133)
Q Consensus 3 kvvlkV~M~C~~C~~kI~kal~~l~GV~sv~vD~ 36 (133)
|+++-+.-.+.+=.......|..|+||-++++=+
T Consensus 43 KiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~lVY 76 (87)
T PRK10553 43 QLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVY 76 (87)
T ss_pred eEEEEEEeCChHHHHHHHHHHHcCCCceEEEEEE
Confidence 4666666677777778888999999999997644
No 54
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=39.84 E-value=1.3e+02 Score=23.10 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHhcCCCcceEEEEeCCCE-------------------EEEeec---CCHHHHHHHHHh
Q 032822 13 DKEKKKAMKTVSGLAGVDSISMDMKEKK-------------------LTVIGD---IDPVSIVSKLRK 58 (133)
Q Consensus 13 ~~C~~kI~kal~~l~GV~sv~vD~~~~k-------------------vtV~G~---vdp~~lv~~Lrk 58 (133)
.||-=.++..+.+++||.++.+=..++. |.|+-| ++-..|++..=.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 4556666667778899999988665543 666655 666777765544
No 55
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=39.26 E-value=1.1e+02 Score=22.55 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhcCCCcceEEEEeCCCEEEEe
Q 032822 14 KEKKKAMKTVSGLAGVDSISMDMKEKKLTVI 44 (133)
Q Consensus 14 ~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~ 44 (133)
.=+.+|.+.|.+++||+.+.|=.-+..+.|-
T Consensus 75 ~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 75 QLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 3467899999999999999988877766664
No 56
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=38.87 E-value=1.2e+02 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHh
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRK 58 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk 58 (133)
...++..|.++ |-..|..=..+|-|.+..+.|+..|..+|++
T Consensus 21 MaeLr~~l~~~-Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~ 62 (137)
T PF08002_consen 21 MAELREALEDL-GFTNVRTYIQSGNVVFESDRDPAELAAKIEK 62 (137)
T ss_dssp HHHHHHHHHHC-T-EEEEEETTTTEEEEEESS-HHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCceEEEeeCCEEEecCCChHHHHHHHHH
Confidence 44556666666 9999999999999999988999998887775
No 57
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.66 E-value=97 Score=18.95 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=14.4
Q ss_pred EeccChhhHHHHHHHHhcCCCcceEEE
Q 032822 8 LGVHDDKEKKKAMKTVSGLAGVDSISM 34 (133)
Q Consensus 8 V~M~C~~C~~kI~kal~~l~GV~sv~v 34 (133)
+......=...|+.+|.+++||...++
T Consensus 46 vev~~~~~l~~i~~~L~~i~gV~~~~~ 72 (74)
T cd04887 46 VDAPSEEHAETIVAAVRALPEVKVLSV 72 (74)
T ss_pred EEcCCHHHHHHHHHHHhcCCCeEEEEe
Confidence 344444444556666666666654443
No 58
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=37.38 E-value=67 Score=18.91 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=8.1
Q ss_pred HHHHHHHHhcCCCcceE
Q 032822 16 KKKAMKTVSGLAGVDSI 32 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv 32 (133)
-..+...|.+++||.+|
T Consensus 55 ~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 55 IEQIVKQLNKLVDVLKV 71 (72)
T ss_pred HHHHHHHHhCCccEEEe
Confidence 34444455555555444
No 59
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=37.23 E-value=1.1e+02 Score=21.52 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhcCCCcceEEEEeCCCEEEE-eecCCHHHHHHHHHhc
Q 032822 14 KEKKKAMKTVSGLAGVDSISMDMKEKKLTV-IGDIDPVSIVSKLRKL 59 (133)
Q Consensus 14 ~C~~kI~kal~~l~GV~sv~vD~~~~kvtV-~G~vdp~~lv~~Lrk~ 59 (133)
.=...|+.+|+.|+|++=-.-|.. +++.| .-.-+...|.+.|...
T Consensus 18 e~l~av~~~L~~ip~~EV~~~d~~-GKlVVVie~~~~~~l~~tie~i 63 (94)
T COG3062 18 ERLSAVKTALLAIPGCEVYGEDAE-GKLVVVIEAEDSETLLETIESI 63 (94)
T ss_pred HHHHHHHHHHhcCCCcEeeccCCC-ceEEEEEEcCchHHHHHHHHHH
Confidence 345688999999999976666766 55544 4446777888777643
No 60
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=37.11 E-value=1.4e+02 Score=20.66 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=32.7
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEee--cCCHHHHHHHHHhc
Q 032822 4 AVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIG--DIDPVSIVSKLRKL 59 (133)
Q Consensus 4 vvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G--~vdp~~lv~~Lrk~ 59 (133)
++|++ +++-+-++..|..+++.+..|.-|++...+..-.|.. .-++..++.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46788 6887778999999999998887776666555666654 35578888888876
No 61
>PRK14435 acylphosphatase; Provisional
Probab=35.86 E-value=1.4e+02 Score=20.13 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=43.4
Q ss_pred CeeEEEEE--eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEE--eec-CCHHHHHHHHHhcC-CeeEeec
Q 032822 1 MKKAVLKL--GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTV--IGD-IDPVSIVSKLRKLC-HTEILSV 67 (133)
Q Consensus 1 MkkvvlkV--~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV--~G~-vdp~~lv~~Lrk~g-~aeivs~ 67 (133)
|+.+.+.| ....=+-+.-+.+...++ |+.-.--+..++.|.+ .|+ -+.+.++..|++.- .+.|-++
T Consensus 1 m~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14435 1 MKALKIRVEGIVQGVGFRYFTRRVAKSL-GVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAKGPPAAVVTNV 72 (90)
T ss_pred CeEEEEEEEEEeCCcCChHHHHHHHHHh-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEE
Confidence 66667777 344556777777777765 7888888998885555 564 44566777776432 5555544
No 62
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=35.52 E-value=93 Score=29.91 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCEEEEee--------cCCHHHHHHHHHhc
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEKKLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
...++..|.+++||.+|++......+.|.= .+++.+|.++|+..
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~~ 210 (1037)
T PRK10555 159 ASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQ 210 (1037)
T ss_pred HHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 467889999999999999987655666652 27888899999864
No 63
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=35.21 E-value=70 Score=30.82 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCcceEEEEeCCCEEEEee--------cCCHHHHHHHHHhc
Q 032822 17 KKAMKTVSGLAGVDSISMDMKEKKLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 17 ~kI~kal~~l~GV~sv~vD~~~~kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
..++..|++++||.+|++......+.|.= .+++.+|.++|+..
T Consensus 160 ~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~~ 210 (1049)
T PRK15127 160 ANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQ 210 (1049)
T ss_pred HHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 56899999999999999987655666652 27778888899854
No 64
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=35.07 E-value=62 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=19.8
Q ss_pred eCCCEEEEeecCCHHHHHHHHHhc
Q 032822 36 MKEKKLTVIGDIDPVSIVSKLRKL 59 (133)
Q Consensus 36 ~~~~kvtV~G~vdp~~lv~~Lrk~ 59 (133)
+.+|+++++|.-+.+.+..++++.
T Consensus 55 F~sGki~itGaks~~~~~~a~~~i 78 (86)
T PF00352_consen 55 FSSGKIVITGAKSEEEAKKAIEKI 78 (86)
T ss_dssp ETTSEEEEEEESSHHHHHHHHHHH
T ss_pred EcCCEEEEEecCCHHHHHHHHHHH
Confidence 467899999998888888887763
No 65
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=1.4e+02 Score=19.70 Aligned_cols=55 Identities=27% Similarity=0.264 Sum_probs=38.9
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcCCeeEeec
Q 032822 4 AVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLCHTEILSV 67 (133)
Q Consensus 4 vvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g~aeivs~ 67 (133)
.+|.+ |++|..=.-.+.++|++++- ...+.|..+ ....+|-..+++.|..+++..
T Consensus 6 ~~LD~rG~~CP~Pv~~~kk~l~~m~~---------Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll~~ 63 (78)
T COG0425 6 KVLDLRGLRCPGPVVETKKALAKLKP---------GEILEVIADDPAAKEDIPAWAKKEGGHELLEV 63 (78)
T ss_pred eEEeccCCcCCccHHHHHHHHHcCCC---------CCEEEEEecCcchHHHHHHHHHHcCCcEEEEE
Confidence 47888 99999999999999998862 335566554 455667777775553456654
No 66
>PRK09577 multidrug efflux protein; Reviewed
Probab=34.28 E-value=1.1e+02 Score=29.54 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCEEEEe--------ecCCHHHHHHHHHhcC
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEKKLTVI--------GDIDPVSIVSKLRKLC 60 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~kvtV~--------G~vdp~~lv~~Lrk~g 60 (133)
...+...|++++||.+|+++.....+.|. -.++..+|.++|+...
T Consensus 158 ~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~n 210 (1032)
T PRK09577 158 SANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHN 210 (1032)
T ss_pred HHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhC
Confidence 46789999999999999998866666664 2377788889998754
No 67
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.96 E-value=1.1e+02 Score=18.51 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEEEeccCh-hhHHHHHHHHhcCC-CcceEEEEeC--CC--EEEEeec-CCHHHHHHHHHhcC
Q 032822 5 VLKLGVHDD-KEKKKAMKTVSGLA-GVDSISMDMK--EK--KLTVIGD-IDPVSIVSKLRKLC 60 (133)
Q Consensus 5 vlkV~M~C~-~C~~kI~kal~~l~-GV~sv~vD~~--~~--kvtV~G~-vdp~~lv~~Lrk~g 60 (133)
.|.+.|... |.-.++...|+... .|.++..... .+ .++|.-+ .|++.+.+.|++.|
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G 65 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAG 65 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCC
Confidence 455556554 78888999998753 3445543332 12 3454433 67789999999988
No 68
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=33.81 E-value=73 Score=30.65 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCEEEEee--------cCCHHHHHHHHHhc
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEKKLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
...+...|++++||.+|++......+.|.= .+++.+|.++|+..
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~~ 210 (1044)
T TIGR00915 159 ASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQAQ 210 (1044)
T ss_pred HHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 357899999999999999988855677753 27888889999873
No 69
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=33.68 E-value=98 Score=21.04 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=22.9
Q ss_pred EEEEEeccCh-hhHHHHHHHH-hcCCCcceEEEE
Q 032822 4 AVLKLGVHDD-KEKKKAMKTV-SGLAGVDSISMD 35 (133)
Q Consensus 4 vvlkV~M~C~-~C~~kI~kal-~~l~GV~sv~vD 35 (133)
+.+.+-|..+ +-...+..++ +.++||+|+++.
T Consensus 51 L~v~~vv~D~~~~~d~lee~i~~~~e~Vqsvei~ 84 (89)
T PF00736_consen 51 LQVSCVVEDDEGSTDDLEEAIESFEEGVQSVEIE 84 (89)
T ss_dssp EEEEEEECTTTCGHHHHHHHHTTCTTTEEEEEEE
T ss_pred EEEEEEEEcCccChHHHHHHHHhcCCCccEEEEE
Confidence 3333444443 6778889999 889999999874
No 70
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=33.25 E-value=71 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=29.4
Q ss_pred HhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhcC
Q 032822 23 VSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKLC 60 (133)
Q Consensus 23 l~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~g 60 (133)
|+.+.|| +++|..+++|||.+-+.-.+|...|.+.|
T Consensus 110 L~~ln~V--l~vD~~~~tVtV~AG~~l~~L~~~L~~~G 145 (541)
T TIGR01676 110 LALMDKV--LEVDEEKKRVRVQAGIRVQQLVDAIKEYG 145 (541)
T ss_pred hhhCCCC--EEEcCCCCEEEEcCCCCHHHHHHHHHHcC
Confidence 3445554 36788899999999999999999999877
No 71
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=32.87 E-value=43 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=17.5
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++|+. .|+|.+.++.|+|.|.
T Consensus 15 dlPG~~kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 15 DVCGFEPDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEE
Confidence 467776 6788888889999886
No 72
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=32.75 E-value=1.2e+02 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=34.1
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHh-cC
Q 032822 4 AVLKLGVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRK-LC 60 (133)
Q Consensus 4 vvlkV~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk-~g 60 (133)
+.|+.+.+ +.|...+...+.+++||.++.. +|.++-.+.|++ .|
T Consensus 63 vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg 107 (297)
T COG2177 63 VYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLG 107 (297)
T ss_pred EEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcC
Confidence 44555555 8899999999999999999876 567777777775 45
No 73
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=32.72 E-value=1e+02 Score=21.88 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhc
Q 032822 17 KKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKL 59 (133)
Q Consensus 17 ~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~ 59 (133)
..+++-|..-=|. +.++|.+ +++++.|.+++..|-+.|++.
T Consensus 36 ~hv~kyl~~ELgt-~g~id~~-~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 36 DHVLKFLLAELGT-QGSIDGK-GRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred HHHHHHHHHHhCC-ceeECCC-CeEEEEEeeCHHHHHHHHHHH
Confidence 4555666553354 4446665 899999999999999999874
No 74
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=32.46 E-value=1.3e+02 Score=18.84 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=36.0
Q ss_pred eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHHHHHHHHhc-C--CeeEeecCC
Q 032822 9 GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVSIVSKLRKL-C--HTEILSVGP 69 (133)
Q Consensus 9 ~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk~-g--~aeivs~~p 69 (133)
+|.-..=...|++++.+++. ...+.+..+.+|.-|...|... | ..+....++
T Consensus 6 ~l~~~~p~~~il~~~~~L~~---------Ge~l~lv~d~~P~pL~~~l~~~~g~~~~~~~~~~~ 60 (69)
T PF10006_consen 6 GLPPPEPHERILEALDELPP---------GETLELVNDHDPRPLYPQLEERRGFFSWEYEEQGP 60 (69)
T ss_pred CCCCcChHHHHHHHHHcCCC---------CCEEEEEeCCCCHHHHHHHHHhCCCceEEEEEcCC
Confidence 33333345677888887753 4468889999999999999987 7 344554443
No 75
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=31.97 E-value=1.6e+02 Score=19.67 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCcc-e--EEEEeCCC--EEEEe--e--cC-C--------HHHHHHHHH-hcC---CeeEeecCCCC
Q 032822 17 KKAMKTVSGLAGVD-S--ISMDMKEK--KLTVI--G--DI-D--------PVSIVSKLR-KLC---HTEILSVGPAK 71 (133)
Q Consensus 17 ~kI~kal~~l~GV~-s--v~vD~~~~--kvtV~--G--~v-d--------p~~lv~~Lr-k~g---~aeivs~~p~k 71 (133)
..|..+|.+++|+. . +.++..++ .++|. - .. | ...|.++|+ .+| .++++.+|...
T Consensus 7 ~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~gtLp 83 (96)
T PF14535_consen 7 SQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPGTLP 83 (96)
T ss_dssp HHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT-S-
T ss_pred HHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCCCcc
Confidence 46889999999998 3 34444443 45553 2 12 2 234556666 356 56667766543
No 76
>smart00749 BON bacterial OsmY and nodulation domain.
Probab=31.65 E-value=1.1e+02 Score=17.63 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCcce--EEEEeCCCEEEEeecCCHHH-HHHHHH
Q 032822 17 KKAMKTVSGLAGVDS--ISMDMKEKKLTVIGDIDPVS-IVSKLR 57 (133)
Q Consensus 17 ~kI~kal~~l~GV~s--v~vD~~~~kvtV~G~vdp~~-lv~~Lr 57 (133)
.+|..+|...+++.. +.+....+.+++.|.+.+.. ...+..
T Consensus 2 ~~v~~~l~~~~~~~~~~~~v~~~~~~vvL~g~~~~~~~~~~~~~ 45 (62)
T smart00749 2 EKVKKALAKDGLIKADSIVVVTDGGVVVLLGGVVDNAEAAAAAA 45 (62)
T ss_pred hhHHHHHhhCCCCCcCceEEEEECCEEEEeeecCCHHHHHHHHH
Confidence 467778877666664 66777788888888754444 444333
No 77
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=31.21 E-value=68 Score=26.65 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=27.8
Q ss_pred EeccChhhHHHHHHHHhcCCCcceEEEEeCC-----------CEEEEeecCCHH
Q 032822 8 LGVHDDKEKKKAMKTVSGLAGVDSISMDMKE-----------KKLTVIGDIDPV 50 (133)
Q Consensus 8 V~M~C~~C~~kI~kal~~l~GV~sv~vD~~~-----------~kvtV~G~vdp~ 50 (133)
+-+|..|....+...+..+ |++.+++|... +++++.|.+||.
T Consensus 215 iilH~cG~~~~~l~~~~e~-g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~ 267 (321)
T cd03309 215 IVHHSCGAAASLVPSMAEM-GVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDV 267 (321)
T ss_pred eEEEeCCCcHHHHHHHHHc-CCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChH
Confidence 3455555555666677666 88888888765 356777776664
No 78
>PRK14440 acylphosphatase; Provisional
Probab=31.05 E-value=1.7e+02 Score=19.72 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=42.7
Q ss_pred CeeEEEEE--eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEE--eec-CCHHHHHHHHHhcC-CeeEee
Q 032822 1 MKKAVLKL--GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTV--IGD-IDPVSIVSKLRKLC-HTEILS 66 (133)
Q Consensus 1 MkkvvlkV--~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV--~G~-vdp~~lv~~Lrk~g-~aeivs 66 (133)
|+...+.| ....-+.+..+.+....+ |+.-.--+..++.|.+ .|+ -+.+.++..|++.. .+.|-.
T Consensus 2 m~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~ 72 (90)
T PRK14440 2 LKRMYARVYGLVQGVGFRKFVQIHAIRL-GIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEK 72 (90)
T ss_pred cEEEEEEEEEeEeccCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEE
Confidence 56667777 345667888888877776 7888878999985555 565 33456667776432 444443
No 79
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=30.43 E-value=1.6e+02 Score=19.62 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=25.2
Q ss_pred CcceEEEEe-CCCEEEEeecCCHHHHHHHHH----hcCCeeEee
Q 032822 28 GVDSISMDM-KEKKLTVIGDIDPVSIVSKLR----KLCHTEILS 66 (133)
Q Consensus 28 GV~sv~vD~-~~~kvtV~G~vdp~~lv~~Lr----k~g~aeivs 66 (133)
|-+.+++.. .+++++|.|+ ++..+...|. ..+++.|-.
T Consensus 30 ~~d~F~l~~~~~gki~I~G~-s~vala~Gl~~YLk~~c~~~isW 72 (86)
T PF12971_consen 30 GKDVFELSSADNGKIVIRGN-SGVALASGLNWYLKYYCHVHISW 72 (86)
T ss_dssp TBEEEEEEE-SSS-EEEEES-SHHHHHHHHHHHHHHHS--B--T
T ss_pred CCCEEEEEeCCCCeEEEEeC-CHHHHHHHHHHHHHHHhCceEee
Confidence 778889988 8999999997 6667776665 345665543
No 80
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=30.42 E-value=42 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=21.3
Q ss_pred CCEEEEeecCCHHHHHHHHHhcC-CeeEeec
Q 032822 38 EKKLTVIGDIDPVSIVSKLRKLC-HTEILSV 67 (133)
Q Consensus 38 ~~kvtV~G~vdp~~lv~~Lrk~g-~aeivs~ 67 (133)
+.-+.|+||-|-..++..|+..| ++.++..
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE-
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEEe
Confidence 34677789999999999999999 8888874
No 81
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=30.34 E-value=75 Score=19.02 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHhcCCCcceEEEEeC--CCEEEEeecCCHHHHHHHHH
Q 032822 19 AMKTVSGLAGVDSISMDMK--EKKLTVIGDIDPVSIVSKLR 57 (133)
Q Consensus 19 I~kal~~l~GV~sv~vD~~--~~kvtV~G~vdp~~lv~~Lr 57 (133)
..+.|....|+. +.++.. ...++|.| +++.+..+++
T Consensus 21 ~i~~I~~~t~~~-I~i~~~~~~~~v~I~G--~~~~v~~A~~ 58 (60)
T PF00013_consen 21 NIKEIEEETGVK-IQIPDDDERDIVTISG--SPEQVEKAKK 58 (60)
T ss_dssp HHHHHHHHHTSE-EEEESTTEEEEEEEEE--SHHHHHHHHH
T ss_pred cHHHhhhhcCeE-EEEcCCCCcEEEEEEe--CHHHHHHHHh
Confidence 344555555774 666544 34899999 7777777765
No 82
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=29.18 E-value=1.2e+02 Score=22.28 Aligned_cols=55 Identities=7% Similarity=0.190 Sum_probs=38.5
Q ss_pred EEE-eccChhhHHHHHHHHhcCCCcceEEEEeC------CCEEEEeecC---------CHHHHHHHHHhcC
Q 032822 6 LKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMK------EKKLTVIGDI---------DPVSIVSKLRKLC 60 (133)
Q Consensus 6 lkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~------~~kvtV~G~v---------dp~~lv~~Lrk~g 60 (133)
++| |++-+.=.+.|+++|++.--=-.|.+... .++|+|.|.+ +...|.++|..+|
T Consensus 39 v~v~G~T~~e~~~~I~~~l~~~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AG 109 (165)
T TIGR03027 39 LVASGKTPTQLARDIEEKLAKYVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVG 109 (165)
T ss_pred EEECCCCHHHHHHHHHHHHHHhccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcC
Confidence 567 89999999999999987421112333332 4689999864 3456899998876
No 83
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=29.02 E-value=62 Score=21.53 Aligned_cols=22 Identities=9% Similarity=0.273 Sum_probs=17.5
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++|+. .+.|+..++.++|.|.
T Consensus 17 dlPG~~~edi~V~v~~~~L~I~g~ 40 (86)
T cd06475 17 DVNHFAPEELVVKTKDGVVEITGK 40 (86)
T ss_pred ECCCCCHHHEEEEEECCEEEEEEE
Confidence 367776 7888888889999986
No 84
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=28.94 E-value=1.5e+02 Score=28.23 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=31.9
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCC--EEEEeec--CCHHHHHHHHHh
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEK--KLTVIGD--IDPVSIVSKLRK 58 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~--kvtV~G~--vdp~~lv~~Lrk 58 (133)
-...++++|++++||+.++-....+ .++|..+ .|.+.....++.
T Consensus 61 vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~~d~~~a~~~v~~ 108 (1021)
T PF00873_consen 61 VTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDGTDIDEALQEVRE 108 (1021)
T ss_dssp THHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccccCHHHHHHHHHH
Confidence 3567899999999999998888877 5555543 677776665553
No 85
>PRK10743 heat shock protein IbpA; Provisional
Probab=28.70 E-value=52 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=7.7
Q ss_pred eEEEEeCCCEEEEeec
Q 032822 31 SISMDMKEKKLTVIGD 46 (133)
Q Consensus 31 sv~vD~~~~kvtV~G~ 46 (133)
.|+|++.++.+||.|.
T Consensus 60 di~V~v~~~~LtI~ge 75 (137)
T PRK10743 60 ELEITAQDNLLVVKGA 75 (137)
T ss_pred HeEEEEECCEEEEEEE
Confidence 4444444455555543
No 86
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=28.44 E-value=58 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.2
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++|+. .+.|...++.|+|.|.
T Consensus 14 dlpG~~~edI~V~v~~~~L~I~ge 37 (83)
T cd06477 14 DVVQFRPEDIIIQVFEGWLLIKGQ 37 (83)
T ss_pred EcCCCCHHHeEEEEECCEEEEEEE
Confidence 366765 7889999999999997
No 87
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=28.40 E-value=60 Score=21.36 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=17.9
Q ss_pred cCCCc--ceEEEEeCCCEEEEeecC
Q 032822 25 GLAGV--DSISMDMKEKKLTVIGDI 47 (133)
Q Consensus 25 ~l~GV--~sv~vD~~~~kvtV~G~v 47 (133)
.|+|| +.++|...++.++|.|.-
T Consensus 17 ~lPGv~~edi~v~~~~~~L~I~g~~ 41 (93)
T cd06471 17 DLPGFKKEDIKLDYKDGYLTISAKR 41 (93)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEEE
Confidence 46777 478888888899998863
No 88
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=28.40 E-value=1e+02 Score=20.96 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=21.2
Q ss_pred EEeccCh-hhHHHHHHHHhcCCCcceEEEEe
Q 032822 7 KLGVHDD-KEKKKAMKTVSGLAGVDSISMDM 36 (133)
Q Consensus 7 kV~M~C~-~C~~kI~kal~~l~GV~sv~vD~ 36 (133)
.+-+.++ +-...+..++++++||+|+++..
T Consensus 54 ~~vv~D~~~~td~lee~i~~~d~VqsveI~~ 84 (88)
T cd00292 54 YCVVEDDEGGTDELEEAISEEDGVQSVDVEA 84 (88)
T ss_pred EEEEEeCCcCcHHHHHHHhccCCceEEEEEE
Confidence 3334443 55588888999999999998743
No 89
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=28.10 E-value=2e+02 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=34.3
Q ss_pred EEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec-C----CHHHHHHHHHhcC
Q 032822 6 LKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD-I----DPVSIVSKLRKLC 60 (133)
Q Consensus 6 lkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~-v----dp~~lv~~Lrk~g 60 (133)
+-| ++| ||....++.|..+. .+.....+.+.|| + ++..+++.|++.+
T Consensus 4 ~vIGDIH--G~~~~l~~ll~~~~------~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~ 56 (275)
T PRK00166 4 YAIGDIQ--GCYDELQRLLEKID------FDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG 56 (275)
T ss_pred EEEEccC--CCHHHHHHHHHhcC------CCCCCCEEEEeCCccCCCcCHHHHHHHHHhcC
Confidence 445 777 89999999998752 1223458888998 4 4888999998765
No 90
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=27.77 E-value=53 Score=24.28 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=16.7
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++||. .|+|+..++.+||.|.
T Consensus 50 dlPGv~kedi~V~v~~~~LtI~ge 73 (142)
T PRK11597 50 ALAGFRQEDLDIQLEGTRLTVKGT 73 (142)
T ss_pred EeCCCCHHHeEEEEECCEEEEEEE
Confidence 467775 6777888888888886
No 91
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=27.22 E-value=66 Score=21.40 Aligned_cols=21 Identities=5% Similarity=0.284 Sum_probs=16.1
Q ss_pred CCCcc--eEEEEeCCCEEEEeec
Q 032822 26 LAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
++|+. .++|+..++.|+|.|.
T Consensus 18 lpG~~~edi~V~v~~~~L~I~g~ 40 (86)
T cd06497 18 VKHFSPEDLTVKVLDDYVEIHGK 40 (86)
T ss_pred CCCCCHHHeEEEEECCEEEEEEE
Confidence 56665 7778888888888886
No 92
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=26.86 E-value=75 Score=26.34 Aligned_cols=56 Identities=20% Similarity=0.378 Sum_probs=33.6
Q ss_pred CeeEEEEE-eccChhhHHH---HHHHHhcCCCcceEEEEeCC--C--EEEEeecCCHHHHHHHHHh
Q 032822 1 MKKAVLKL-GVHDDKEKKK---AMKTVSGLAGVDSISMDMKE--K--KLTVIGDIDPVSIVSKLRK 58 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~~k---I~kal~~l~GV~sv~vD~~~--~--kvtV~G~vdp~~lv~~Lrk 58 (133)
|.+++--| +.+=+.=..+ |..+..++++|.-++++++. + .+|+.| ||+.++.++-+
T Consensus 1 m~kivecvpNfSEG~~~~~ie~i~a~~~~~~~v~ildve~danhNRsViT~vg--dp~~~~~A~f~ 64 (302)
T COG3643 1 MMKIVECVPNFSEGRDLEKIEKIVAAAKSIPTVKILDVEMDANHNRSVITLVG--DPSKVVNAAFA 64 (302)
T ss_pred CccceeeccCccccccHHHHHHHHHHHhcCCceEEEEeccCCCCCceEEEEec--ChHHHHHHHHH
Confidence 55555555 6665554444 45556677888766665543 3 445555 77777776654
No 93
>PRK14424 acylphosphatase; Provisional
Probab=26.37 E-value=2.2e+02 Score=19.46 Aligned_cols=66 Identities=9% Similarity=0.153 Sum_probs=40.7
Q ss_pred CeeEEEEEec--cChhhHHHHHHHHhcCCCcceEEEEeCCCE--EEEeec-CCHHHHHHHHHhcC-CeeEeec
Q 032822 1 MKKAVLKLGV--HDDKEKKKAMKTVSGLAGVDSISMDMKEKK--LTVIGD-IDPVSIVSKLRKLC-HTEILSV 67 (133)
Q Consensus 1 MkkvvlkV~M--~C~~C~~kI~kal~~l~GV~sv~vD~~~~k--vtV~G~-vdp~~lv~~Lrk~g-~aeivs~ 67 (133)
|+.+.|.|.- ..-+=+.-+.+....+ |+.-.--++.++. +.+.|+ -..+.++..|+... .+.|.++
T Consensus 6 m~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v 77 (94)
T PRK14424 6 IETYYVRVRGVVQGVGFRHATVREAHAL-GLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRHGPPAARVTEV 77 (94)
T ss_pred cEEEEEEEEEeecCCchHHHHHHHHHHc-CCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5666666733 3334455555555544 7887777999984 455665 34566777777433 6677665
No 94
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=26.01 E-value=1e+02 Score=19.47 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=20.8
Q ss_pred eEEEEeCCCEEEEeec-CCHHHHHHHHHh
Q 032822 31 SISMDMKEKKLTVIGD-IDPVSIVSKLRK 58 (133)
Q Consensus 31 sv~vD~~~~kvtV~G~-vdp~~lv~~Lrk 58 (133)
+|.+|..++.|.|.|+ -+-..|...|++
T Consensus 47 ~i~~d~~tNsliv~g~~~~~~~i~~li~~ 75 (82)
T PF03958_consen 47 RIVADERTNSLIVRGTPEDLEQIRELIKQ 75 (82)
T ss_dssp EEEEECTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEeCHHHHHHHHHHHHH
Confidence 8999999999999997 444445444444
No 95
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.92 E-value=82 Score=21.28 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=22.8
Q ss_pred EEEEeCCCEEEEeec-CCHHHHHHHHHhcC-CeeEeecCC
Q 032822 32 ISMDMKEKKLTVIGD-IDPVSIVSKLRKLC-HTEILSVGP 69 (133)
Q Consensus 32 v~vD~~~~kvtV~G~-vdp~~lv~~Lrk~g-~aeivs~~p 69 (133)
+.+|++++++.|.|. --...-+..|.+.| ++.++++..
T Consensus 1 l~l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 1 LFLDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EEE--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 357889999999986 22223334444667 888888764
No 96
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=25.83 E-value=71 Score=21.18 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=16.3
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++|+. .++|...++.++|.|.
T Consensus 18 ~lPG~~kedi~v~~~~~~L~I~g~ 41 (90)
T cd06470 18 AVAGFSEDDLEIEVENNQLTVTGK 41 (90)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEE
Confidence 356765 6777777888888886
No 97
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=25.61 E-value=1.9e+02 Score=28.12 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCC--EEEEeec--CCHH----HHHHHHHh
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEK--KLTVIGD--IDPV----SIVSKLRK 58 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~--kvtV~G~--vdp~----~lv~~Lrk 58 (133)
=.+.|+++|++++|++.++-....+ .+||+.+ .|++ ++.+++..
T Consensus 62 Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~ 113 (1009)
T COG0841 62 VTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQ 113 (1009)
T ss_pred HhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHHH
Confidence 3577899999999999886554444 6666653 6776 55555554
No 98
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=25.16 E-value=1.7e+02 Score=22.03 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCcceEEEEeCCCEEEEe-ecCCHHHHHHHHH
Q 032822 18 KAMKTVSGLAGVDSISMDMKEKKLTVI-GDIDPVSIVSKLR 57 (133)
Q Consensus 18 kI~kal~~l~GV~sv~vD~~~~kvtV~-G~vdp~~lv~~Lr 57 (133)
+.-+.|....|+. +++|.+++.|+|. ...|+..+..+..
T Consensus 18 ~~Ik~I~~~tgv~-I~Id~~~g~V~I~~~t~d~~~i~kA~~ 57 (172)
T TIGR03665 18 ETKKEIEERTGVK-LDIDSETGEVKIEEEDEDPLAVMKARE 57 (172)
T ss_pred hHHHHHHHHhCcE-EEEEcCCceEEEecCCCCHHHHHHHHH
Confidence 4455666667884 8888888899994 3467777666643
No 99
>PRK11018 hypothetical protein; Provisional
Probab=25.05 E-value=2e+02 Score=18.64 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=35.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeec--CCHHHHHHHHHhcCC
Q 032822 4 AVLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGD--IDPVSIVSKLRKLCH 61 (133)
Q Consensus 4 vvlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~--vdp~~lv~~Lrk~g~ 61 (133)
.+|.+ |+.|..=.-+.+++|.+++.= ..+.|..+ .....|-.-+++.||
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~~~G~ 60 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDARNHGY 60 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHHHcCC
Confidence 46777 999999999999999998632 23444433 556677777777874
No 100
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=25.00 E-value=74 Score=21.11 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=17.2
Q ss_pred CCCcc--eEEEEeCCCEEEEeecC
Q 032822 26 LAGVD--SISMDMKEKKLTVIGDI 47 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~v 47 (133)
++|+. .++|+..++.++|.|.-
T Consensus 15 lpG~~~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 15 VCHFTPDEITVRTVDNLLEVSARH 38 (83)
T ss_pred cCCCCHHHeEEEEECCEEEEEEEE
Confidence 56665 78888888999999863
No 101
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.88 E-value=1.2e+02 Score=22.44 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=29.7
Q ss_pred EEEEEeccChhh------HHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHH----HHHHHHhcC
Q 032822 4 AVLKLGVHDDKE------KKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVS----IVSKLRKLC 60 (133)
Q Consensus 4 vvlkV~M~C~~C------~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~----lv~~Lrk~g 60 (133)
+.+.|.++=.+| +..|..+|..+ |+.+|+|++ +..=..+++. -..+|+..|
T Consensus 27 V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i-----~~~p~Wt~d~it~~gr~~l~~~g 87 (146)
T TIGR02159 27 VVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVST-----SLDPPWTTDWITEDAREKLREYG 87 (146)
T ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeE-----eeCCCCChHHCCHHHHHHHHhcC
Confidence 445555554444 35688889887 998887754 2222234444 445555555
No 102
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=24.55 E-value=1.9e+02 Score=24.58 Aligned_cols=56 Identities=11% Similarity=0.281 Sum_probs=40.9
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCcceEEEEeC---CCEEEEeecC---------C-HHHHHHHHHhcC
Q 032822 5 VLKL-GVHDDKEKKKAMKTVSGLAGVDSISMDMK---EKKLTVIGDI---------D-PVSIVSKLRKLC 60 (133)
Q Consensus 5 vlkV-~M~C~~C~~kI~kal~~l~GV~sv~vD~~---~~kvtV~G~v---------d-p~~lv~~Lrk~g 60 (133)
.++| |++-+.-.+.|.+.|++.--=-.|.|.+. .++|+|.|.+ + +..|+++|..+|
T Consensus 133 ~V~vaG~T~~e~~~~I~~~L~~~~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaIa~AG 202 (379)
T PRK15078 133 KVHVAGKTVTEIRSDITGRLAKYIESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDAINAAG 202 (379)
T ss_pred eEEECCCCHHHHHHHHHHHHHHhccCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHHHHHcc
Confidence 3677 89999999999999987532224555544 4589999863 2 578999999876
No 103
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=24.47 E-value=75 Score=21.15 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.1
Q ss_pred CCCcc--eEEEEeCCCEEEEeec
Q 032822 26 LAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
++|+. +|+|...++.|+|.|.
T Consensus 15 lpG~~~edI~V~v~~~~L~I~g~ 37 (87)
T cd06481 15 VRGFSPEDLSVRVDGRKLVVTGK 37 (87)
T ss_pred CCCCChHHeEEEEECCEEEEEEE
Confidence 56664 6778888888888885
No 104
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=24.43 E-value=3.1e+02 Score=20.61 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhcCCCcceEEEEeCCC--------------EEEEeec---CCHHHHHHHHHh
Q 032822 13 DKEKKKAMKTVSGLAGVDSISMDMKEK--------------KLTVIGD---IDPVSIVSKLRK 58 (133)
Q Consensus 13 ~~C~~kI~kal~~l~GV~sv~vD~~~~--------------kvtV~G~---vdp~~lv~~Lrk 58 (133)
+||-=-++..+.+++||.++.+=...+ .|.|+.| ++-..|++.+=.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 456666677778889999998754442 2555554 666777765544
No 105
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=24.10 E-value=86 Score=20.58 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=16.1
Q ss_pred CCCcc--eEEEEeCCCEEEEeec
Q 032822 26 LAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
++|+. .++|...++.++|.|.
T Consensus 15 lpG~~~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 15 VKHFSPEELSVKVLGDFVEIHGK 37 (83)
T ss_pred CCCCCHHHeEEEEECCEEEEEEE
Confidence 56665 6778888889999885
No 106
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=24.00 E-value=80 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=16.4
Q ss_pred CCCcc--eEEEEeCCCEEEEeec
Q 032822 26 LAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
++|+. .++|...++.|+|.|.
T Consensus 16 lpG~~pedi~V~v~~~~L~I~ge 38 (81)
T cd06479 16 VSDFSPEDIIVTTSNNQIEVHAE 38 (81)
T ss_pred CCCCCHHHeEEEEECCEEEEEEE
Confidence 56665 6788888889999886
No 107
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=73 Score=23.04 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=14.2
Q ss_pred cCCCcc--eEEEEeCCCEEEEeecC
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGDI 47 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~v 47 (133)
.++|+. .|+|....+.|+|.|..
T Consensus 57 elPG~~kedI~I~~~~~~l~I~g~~ 81 (146)
T COG0071 57 ELPGVDKEDIEITVEGNTLTIRGER 81 (146)
T ss_pred EcCCCChHHeEEEEECCEEEEEEEe
Confidence 355665 56666666667776653
No 108
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=23.50 E-value=1.5e+02 Score=28.68 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCcceEEEEeCC-CEEEEee--------cCCHHHHHHHHHhc
Q 032822 17 KKAMKTVSGLAGVDSISMDMKE-KKLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 17 ~kI~kal~~l~GV~sv~vD~~~-~kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
..++..|++++||.+|++.... ..+.|.= .+++.+|..+|+..
T Consensus 169 ~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~~ 220 (1040)
T PRK10503 169 TRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGA 220 (1040)
T ss_pred HHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 5788999999999999988754 3666652 27788888899853
No 109
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=23.37 E-value=95 Score=21.39 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=17.7
Q ss_pred CEEEEeecCCHHHHHHHHHh
Q 032822 39 KKLTVIGDIDPVSIVSKLRK 58 (133)
Q Consensus 39 ~kvtV~G~vdp~~lv~~Lrk 58 (133)
-.+.|.|++|++.+...|++
T Consensus 20 ~~l~i~Gd~~~~~~~~~i~~ 39 (184)
T PF05193_consen 20 MTLVIVGDIDPDELEKLIEK 39 (184)
T ss_dssp EEEEEEESSGHHHHHHHHHH
T ss_pred eEEEEEcCccHHHHHHHHHh
Confidence 37888999999999999886
No 110
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=23.07 E-value=40 Score=21.51 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=17.2
Q ss_pred EEEeccChhhHHHHHHHHhcC
Q 032822 6 LKLGVHDDKEKKKAMKTVSGL 26 (133)
Q Consensus 6 lkV~M~C~~C~~kI~kal~~l 26 (133)
++++-.|++|...|.+.|...
T Consensus 33 ~~~g~~CG~C~~~i~~il~~~ 53 (64)
T PRK10509 33 VPVGNQCGKCIRAAREVMQDE 53 (64)
T ss_pred cCCCCCccchHHHHHHHHHHH
Confidence 566889999999999888653
No 111
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.61 E-value=1.7e+02 Score=28.20 Aligned_cols=44 Identities=7% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCC-EEEEee--------cCCHHHHHHHHHhc
Q 032822 16 KKKAMKTVSGLAGVDSISMDMKEK-KLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~vD~~~~-kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
...|+..|++++||.+|++..... .+.|.= .+++.+|.++|+..
T Consensus 158 ~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~~ 210 (1017)
T PRK09579 158 SRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRY 210 (1017)
T ss_pred HHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 456899999999999998866543 555541 27788889999863
No 112
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.59 E-value=83 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=17.7
Q ss_pred cCCCc--ceEEEEeCCCEEEEeecC
Q 032822 25 GLAGV--DSISMDMKEKKLTVIGDI 47 (133)
Q Consensus 25 ~l~GV--~sv~vD~~~~kvtV~G~v 47 (133)
.++|+ ++++|....+.|.|.|..
T Consensus 14 ~lpg~~~~~i~V~v~~~~l~I~g~~ 38 (88)
T cd06464 14 DLPGFKKEDIKVEVEDGVLTISGER 38 (88)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEEE
Confidence 46777 578888888899998863
No 113
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=22.50 E-value=1.8e+02 Score=19.47 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCcceEEEEeCCCEEEEe--ecCCHHHHHHHHHhc
Q 032822 17 KKAMKTVSGLAGVDSISMDMKEKKLTVI--GDIDPVSIVSKLRKL 59 (133)
Q Consensus 17 ~kI~kal~~l~GV~sv~vD~~~~kvtV~--G~vdp~~lv~~Lrk~ 59 (133)
.-+-++|-.++||.+|-+. .+-|||+ .++|-+.|...|+..
T Consensus 37 spLA~~Lf~i~gV~~Vf~~--~dfItVtK~~~~~W~~l~~~I~~~ 79 (87)
T PF08712_consen 37 SPLAQALFAIPGVKSVFIG--DDFITVTKNPDADWEDLKPEIREV 79 (87)
T ss_dssp -HHHHHHHTSTTEEEEEEE--TTEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCCEeEEEEE--CCEEEEeeCCCCCHHHHHHHHHHH
Confidence 3445566699999998664 4577776 458989998888764
No 114
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=22.44 E-value=2.3e+02 Score=18.45 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=39.3
Q ss_pred ec-cChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEe--ec-CCHHHHHHHHHhcC-CeeE
Q 032822 9 GV-HDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVI--GD-IDPVSIVSKLRKLC-HTEI 64 (133)
Q Consensus 9 ~M-~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~--G~-vdp~~lv~~Lrk~g-~aei 64 (133)
+| ...+=-.+|+++|... +|.=|..+.+.+++|.- |+ -+...++.+|++.- .++|
T Consensus 10 dMvG~~g~d~~i~~~l~~~-~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~a~i 69 (71)
T cd04910 10 DMVGEVGYDLEILELLQRF-KVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPNAEI 69 (71)
T ss_pred CccCChhHHHHHHHHHHHc-CCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCccCcc
Confidence 44 4566778999999885 88888889999988875 43 24566777777654 4443
No 115
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=22.35 E-value=93 Score=20.59 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=16.6
Q ss_pred cCCCcc--eEEEEeCCCEEEEeec
Q 032822 25 GLAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
.++|+. .++|...++.++|.|.
T Consensus 14 dlpG~~~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 14 DVKHFSPEELKVKVLGDFIEIHGK 37 (84)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEE
Confidence 356764 6778888889999885
No 116
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.97 E-value=1.6e+02 Score=21.60 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=26.6
Q ss_pred EEEEeCCCEEEEeec-CCHHHHHHHHHhcC-CeeEeecC
Q 032822 32 ISMDMKEKKLTVIGD-IDPVSIVSKLRKLC-HTEILSVG 68 (133)
Q Consensus 32 v~vD~~~~kvtV~G~-vdp~~lv~~Lrk~g-~aeivs~~ 68 (133)
+-+|++++++.|.|- -=....+..|.+.| .+.++++.
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 568999999999975 33344566677777 78888643
No 117
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=21.88 E-value=1.2e+02 Score=22.82 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=37.1
Q ss_pred eeEEEEEeccC-hhhHHHHHHHHhcCC-CcceEEEEeC-CC--EEEEee-----cCCHHHHHHHHHhcC---CeeEeec
Q 032822 2 KKAVLKLGVHD-DKEKKKAMKTVSGLA-GVDSISMDMK-EK--KLTVIG-----DIDPVSIVSKLRKLC---HTEILSV 67 (133)
Q Consensus 2 kkvvlkV~M~C-~~C~~kI~kal~~l~-GV~sv~vD~~-~~--kvtV~G-----~vdp~~lv~~Lrk~g---~aeivs~ 67 (133)
+.++|.+.+.. -|--..+..+++... .|-+|.=++. ++ .+|+.- .-|...|+.+||+.- .+||++.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivgs 149 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVGS 149 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEeec
Confidence 34666665544 466666777776542 2323322221 12 333321 268889999999864 6777754
No 118
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=21.87 E-value=1e+02 Score=17.91 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCcceEE
Q 032822 16 KKKAMKTVSGLAGVDSIS 33 (133)
Q Consensus 16 ~~kI~kal~~l~GV~sv~ 33 (133)
...+.+.|++++||.+|.
T Consensus 52 ~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 52 PEEVLEELKALPGIIRVR 69 (71)
T ss_pred CHHHHHHHHcCCCeEEEE
Confidence 458999999999999875
No 119
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.62 E-value=1.7e+02 Score=22.54 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=27.3
Q ss_pred EEEEeCCCEEEEeec-CCHHHHHHHHHhcC-CeeEeecCCC
Q 032822 32 ISMDMKEKKLTVIGD-IDPVSIVSKLRKLC-HTEILSVGPA 70 (133)
Q Consensus 32 v~vD~~~~kvtV~G~-vdp~~lv~~Lrk~g-~aeivs~~p~ 70 (133)
+-+|+.++++.|.|- --...-+..|.+.| ++.++++..-
T Consensus 3 ~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 3 VFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 457888889999875 33444556666777 8888887543
No 120
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=21.60 E-value=2.5e+02 Score=27.10 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCC--EEEEeec--CCHHHHHHHHH
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEK--KLTVIGD--IDPVSIVSKLR 57 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~--kvtV~G~--vdp~~lv~~Lr 57 (133)
-.+.|+++|++++||+.++....++ .++|..+ .|.+.....++
T Consensus 72 Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~a~~ev~ 118 (1040)
T PRK10503 72 VTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQ 118 (1040)
T ss_pred HHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHHHHHHHH
Confidence 3467899999999999998766666 5555543 56655444444
No 121
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=21.47 E-value=94 Score=18.34 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=15.8
Q ss_pred CCCc--ceEEEEeCCCEEEEeec
Q 032822 26 LAGV--DSISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV--~sv~vD~~~~kvtV~G~ 46 (133)
++|+ +.+.|+...+.++|.|.
T Consensus 14 ~~~~~~~~i~v~~~~~~l~v~~~ 36 (80)
T cd00298 14 LPGVKKEDIKVEVEDNVLTISGK 36 (80)
T ss_pred CCCCCHHHeEEEEECCEEEEEEE
Confidence 4555 67888888888888875
No 122
>TIGR02024 FtcD glutamate formiminotransferase. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.
Probab=21.45 E-value=4e+02 Score=22.35 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=32.5
Q ss_pred CeeEEEEE-eccChh---hHHHHHHHHhcCCCcceEEEEeCC--C--EEEEeecCCHHHHHHHH
Q 032822 1 MKKAVLKL-GVHDDK---EKKKAMKTVSGLAGVDSISMDMKE--K--KLTVIGDIDPVSIVSKL 56 (133)
Q Consensus 1 MkkvvlkV-~M~C~~---C~~kI~kal~~l~GV~sv~vD~~~--~--kvtV~G~vdp~~lv~~L 56 (133)
|++++-=| +.+=++ =..+|.+++...+||.=++++.+. + -+|+.|+ |+.|.+++
T Consensus 1 m~klveCvpnfSEGR~~~vie~I~~a~~~~~gv~lld~~~D~d~NRsv~Tlvg~--pe~v~eaa 62 (298)
T TIGR02024 1 MMKLVECVPNFSEGRNKEVIEKIVDAIIKTDNVKLLDVDMDPDHNRSVITFVGE--PECVVNAA 62 (298)
T ss_pred CceeEEEeeeeccCCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCceEEEEecC--hHHHHHHH
Confidence 54544433 555443 445667777788898877766543 3 6677776 55555443
No 123
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=21.44 E-value=1.3e+02 Score=29.01 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhcCCCcceEEEEeCCC--EEEEee--------cCCHHHHHHHHHhc
Q 032822 14 KEKKKAMKTVSGLAGVDSISMDMKEK--KLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 14 ~C~~kI~kal~~l~GV~sv~vD~~~~--kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
.-+.+++..|.+++||..|+.|...+ .+.|.= .+++.+|.+.|+..
T Consensus 698 ~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~~l~~~ 753 (1051)
T TIGR00914 698 ATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATA 753 (1051)
T ss_pred HHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 45678999999999999999987654 455542 27888999999853
No 124
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=21.41 E-value=3.8e+02 Score=20.46 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=38.5
Q ss_pred EEEEeccChhhHHHH------------HHHHhcC------CCcceEE-EEeCCCEEEEeecCCH------HHHHHHHH-h
Q 032822 5 VLKLGVHDDKEKKKA------------MKTVSGL------AGVDSIS-MDMKEKKLTVIGDIDP------VSIVSKLR-K 58 (133)
Q Consensus 5 vlkV~M~C~~C~~kI------------~kal~~l------~GV~sv~-vD~~~~kvtV~G~vdp------~~lv~~Lr-k 58 (133)
=+|-++-|.+|.+++ +++|.+| .+++-.. +...+.-+-|.+.-|. -..+++|+ +
T Consensus 9 c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~l~~~ 88 (166)
T PRK06418 9 CVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKALSRK 88 (166)
T ss_pred EeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHHHHHH
Confidence 355589999999874 7888776 3444333 3333444444432222 24677776 4
Q ss_pred cC-CeeEeec
Q 032822 59 LC-HTEILSV 67 (133)
Q Consensus 59 ~g-~aeivs~ 67 (133)
+| +++++.-
T Consensus 89 lgk~VevVE~ 98 (166)
T PRK06418 89 LGKKVRVVEK 98 (166)
T ss_pred hCCcEEEEEc
Confidence 68 8999874
No 125
>PRK07334 threonine dehydratase; Provisional
Probab=21.27 E-value=3.7e+02 Score=22.70 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=38.6
Q ss_pred EEEEEec-cChhhHHHHHHHHhcCC-CcceEEEEeC-----CCEEEEe--ec-CCHH---HHHHHHHhcC-CeeEe
Q 032822 4 AVLKLGV-HDDKEKKKAMKTVSGLA-GVDSISMDMK-----EKKLTVI--GD-IDPV---SIVSKLRKLC-HTEIL 65 (133)
Q Consensus 4 vvlkV~M-~C~~C~~kI~kal~~l~-GV~sv~vD~~-----~~kvtV~--G~-vdp~---~lv~~Lrk~g-~aeiv 65 (133)
+.|.|.. .-.+=-..|...|+... .|.+++.... ++..++. -+ -|.. .|+++|++.| .++|+
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~~~~~~ 402 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGFEARLV 402 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCCeeEeC
Confidence 5677744 34566889999998752 3556665432 3443332 22 2444 7888999988 77775
No 126
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.15 E-value=3.4e+02 Score=19.88 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=44.7
Q ss_pred CeeEEEEE-eccChhhH--HHHHHHHhcCC---CcceEEEEeCCCEEEEeecCCHHHHHHHHHh-cC--CeeEeec
Q 032822 1 MKKAVLKL-GVHDDKEK--KKAMKTVSGLA---GVDSISMDMKEKKLTVIGDIDPVSIVSKLRK-LC--HTEILSV 67 (133)
Q Consensus 1 MkkvvlkV-~M~C~~C~--~kI~kal~~l~---GV~sv~vD~~~~kvtV~G~vdp~~lv~~Lrk-~g--~aeivs~ 67 (133)
||++.+-+ ---|.-|+ +.+.++|..-- -|...+.-.+++.+.+-|..-.-.++..+-+ .| .+-+..-
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~~~lgne~v~lfKy 76 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSKDGQVKVLGMDKGYTLINNFFKHLGNEYVSLFKY 76 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeeccCCceEEEecccceehHHHHHHhhcccEEEEEEE
Confidence 77766666 45799887 44555554422 3556667788999999998777778888875 55 3444433
No 127
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=21.09 E-value=2.8e+02 Score=18.94 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.0
Q ss_pred eeEEEEE--eccChhhHHHHHHHHhcCCCcceEEEEeCCCEEEEeecCCHHH---HHHHHHh
Q 032822 2 KKAVLKL--GVHDDKEKKKAMKTVSGLAGVDSISMDMKEKKLTVIGDIDPVS---IVSKLRK 58 (133)
Q Consensus 2 kkvvlkV--~M~C~~C~~kI~kal~~l~GV~sv~vD~~~~kvtV~G~vdp~~---lv~~Lrk 58 (133)
.++.+.| ...+=+=+..+.+....+ ||.-.--++.++.|.|.-.-+... +++.|++
T Consensus 4 ~~~~~~V~GrVQGVGFR~~~~~~A~~l-gl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~~ 64 (92)
T COG1254 4 VRARARVYGRVQGVGFRYFTRSEALRL-GLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLRK 64 (92)
T ss_pred EEEEEEEEEEeccccHHHHHHHHHHHC-CCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHHh
Confidence 3445555 455666666666666666 799999999999888875544444 4444443
No 128
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=21.00 E-value=76 Score=21.03 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=16.0
Q ss_pred eccChhhHHHHHHHHhcC
Q 032822 9 GVHDDKEKKKAMKTVSGL 26 (133)
Q Consensus 9 ~M~C~~C~~kI~kal~~l 26 (133)
.|.|..|+.++++++.+-
T Consensus 15 tLPC~~Cr~HA~~ai~kN 32 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKN 32 (70)
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 578999999999999875
No 129
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=20.98 E-value=1.2e+02 Score=18.71 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=20.9
Q ss_pred CEEEEeec-CCHHHHHHHHHh----cC--CeeEeec
Q 032822 39 KKLTVIGD-IDPVSIVSKLRK----LC--HTEILSV 67 (133)
Q Consensus 39 ~kvtV~G~-vdp~~lv~~Lrk----~g--~aeivs~ 67 (133)
+.|+|.|. .++.++.++|.+ .| .-.|++.
T Consensus 6 G~Isvs~~~~s~~d~~~~la~kAd~~GA~~y~I~~~ 41 (56)
T PF07338_consen 6 GTISVSGNFGSPDDAEEALAKKADEKGAKYYRITSA 41 (56)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred EEEEEccccCCHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 47888887 899999998874 34 3455554
No 130
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=20.84 E-value=92 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.8
Q ss_pred CCCcc--eEEEEeCCCEEEEeec
Q 032822 26 LAGVD--SISMDMKEKKLTVIGD 46 (133)
Q Consensus 26 l~GV~--sv~vD~~~~kvtV~G~ 46 (133)
++|+. .++|...++.|+|.|.
T Consensus 15 lpG~~~edI~v~v~~~~L~I~g~ 37 (83)
T cd06526 15 VKGFKPEELKVKVSDNKLVVEGK 37 (83)
T ss_pred CCCCCHHHcEEEEECCEEEEEEE
Confidence 55654 6777777889999886
No 131
>PRK09579 multidrug efflux protein; Reviewed
Probab=20.66 E-value=2.7e+02 Score=26.77 Aligned_cols=43 Identities=9% Similarity=0.239 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCCC--EEEEeec--CCHHHHHHHHH
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKEK--KLTVIGD--IDPVSIVSKLR 57 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~~--kvtV~G~--vdp~~lv~~Lr 57 (133)
-.+.++++|+.++||++++-....+ .++|..+ .|.+.....++
T Consensus 63 Vt~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~v~ 109 (1017)
T PRK09579 63 ITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELL 109 (1017)
T ss_pred HHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCCHHHHHHHHH
Confidence 3567899999999999998766666 4444433 67665554444
No 132
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=20.63 E-value=2.7e+02 Score=21.75 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=32.6
Q ss_pred eccChhhHHHHHHHHhcCCC--cceEEEEeCCCEEEEeec-C----CHHHHHHHHHhc
Q 032822 9 GVHDDKEKKKAMKTVSGLAG--VDSISMDMKEKKLTVIGD-I----DPVSIVSKLRKL 59 (133)
Q Consensus 9 ~M~C~~C~~kI~kal~~l~G--V~sv~vD~~~~kvtV~G~-v----dp~~lv~~Lrk~ 59 (133)
++| ||.....+.|..+.= ...+.....+.++.+.|| + +...+++.|.+.
T Consensus 8 DIH--G~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~ 63 (245)
T PRK13625 8 DIH--GCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWEL 63 (245)
T ss_pred ECc--cCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHH
Confidence 777 899999999987631 111222234568999998 4 477777776653
No 133
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=20.62 E-value=1.2e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.569 Sum_probs=16.4
Q ss_pred cCCCcc--eEEEEeCC-CEEEEeecC
Q 032822 25 GLAGVD--SISMDMKE-KKLTVIGDI 47 (133)
Q Consensus 25 ~l~GV~--sv~vD~~~-~kvtV~G~v 47 (133)
.|+||. .++++..+ +.++|.|..
T Consensus 16 ~lPGv~~edi~i~v~~~~~L~I~g~~ 41 (92)
T cd06472 16 DVPGVKKEDVKVEVEDGRVLRISGER 41 (92)
T ss_pred ECCCCChHhEEEEEeCCCEEEEEEEe
Confidence 467775 67777765 488998863
No 134
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.47 E-value=2.6e+02 Score=21.91 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=39.1
Q ss_pred EEEE-eccChhhHHHHHHHHhc---CCCcceEEEEe---CCCEEEEeecC---------CHHHHHHHHHhcC
Q 032822 5 VLKL-GVHDDKEKKKAMKTVSG---LAGVDSISMDM---KEKKLTVIGDI---------DPVSIVSKLRKLC 60 (133)
Q Consensus 5 vlkV-~M~C~~C~~kI~kal~~---l~GV~sv~vD~---~~~kvtV~G~v---------dp~~lv~~Lrk~g 60 (133)
.++| +|+-+.=...|.+.|++ +..- .|+|.+ ....|+|.|.+ ....|.++|..+|
T Consensus 39 ~v~v~G~T~~e~~~~I~~~l~~~~~~~~p-~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG 109 (239)
T TIGR03028 39 EVKLGGETPAAAERKIASRLSKGGFVKQP-QVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG 109 (239)
T ss_pred eEEECCCCHHHHHHHHHHHHhhcCcccCC-EEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC
Confidence 3577 88888889999999975 2221 344444 35699999864 2367999999877
No 135
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=20.42 E-value=82 Score=22.89 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=25.2
Q ss_pred EeCCCEEEEeec-CCHHHHHHHHHhcC-CeeEeecCC
Q 032822 35 DMKEKKLTVIGD-IDPVSIVSKLRKLC-HTEILSVGP 69 (133)
Q Consensus 35 D~~~~kvtV~G~-vdp~~lv~~Lrk~g-~aeivs~~p 69 (133)
++.+++|.|+|. ....+++..|.+.| ++.++.-.|
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 345689999987 88888999999888 777776544
No 136
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=20.39 E-value=2.6e+02 Score=27.15 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=36.2
Q ss_pred hHHHHHHHHhcCCCcceEEEEeCC-CEEEEee--------cCCHHHHHHHHHhc
Q 032822 15 EKKKAMKTVSGLAGVDSISMDMKE-KKLTVIG--------DIDPVSIVSKLRKL 59 (133)
Q Consensus 15 C~~kI~kal~~l~GV~sv~vD~~~-~kvtV~G--------~vdp~~lv~~Lrk~ 59 (133)
-.+.+...|++++||.+|++-... ..|.|.= .+++.+|..+|+..
T Consensus 156 ~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~q 209 (1009)
T COG0841 156 AASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQ 209 (1009)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 356789999999999999998874 4777753 27888999999863
Done!