BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032825
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 185 bits (469), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 96/120 (80%)
Query: 10 RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTI 69
RYEY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI
Sbjct: 78 RYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTI 137
Query: 70 FKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSI 129
KRLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F EF LID++EL PLQELI+ +
Sbjct: 138 LKRLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 197
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 185 bits (469), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 96/120 (80%)
Query: 10 RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTI 69
RYEY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI
Sbjct: 61 RYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTI 120
Query: 70 FKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSI 129
KRLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F EF LID++EL PLQELI+ +
Sbjct: 121 LKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 180
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 9 HRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNF-KEVVK 67
+ YEY WA + + P+ VSAPKYVE L W + Q DDES+FP K+ FP F + V++
Sbjct: 113 NEYEYLWAFQ-KGQPPVSVSAPKYVECLXRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQ 171
Query: 68 TIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELID 127
I +RLFRVYAHIY HF +I+ L + LNT F+HF LF EF L+ + GPL EL+
Sbjct: 172 PILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVX 231
Query: 128 SI 129
+
Sbjct: 232 EL 233
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 4 KDGKLHRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK 63
+D K+ W + KKP PK +E+LM W+ +D P G P + +
Sbjct: 128 EDVKMQMVCRDWGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIE 179
Query: 64 EVVKTIFKRLFRVYAHIYHSH 84
++ FK+ Y + +
Sbjct: 180 PLLVGEFKKNNSNYGAVLTNR 200
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 4 KDGKLHRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK 63
+D K+ W + KKP PK +E+LM W+ +D P G P + +
Sbjct: 128 EDVKMQMVCRDWGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIE 179
Query: 64 EVVKTIFKRLFRVYAHIYHSH 84
++ FK+ Y + +
Sbjct: 180 PLLVGEFKKNNSNYGAVLTNR 200
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 4 KDGKLHRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK 63
+D K+ W + KKP PK +E+LM W+ +D P G P + +
Sbjct: 128 EDVKMQMVCRDWGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIE 179
Query: 64 EVVKTIFKRLFRVYAHI 80
++ FK+ Y +
Sbjct: 180 PLLVGEFKKNNSNYGAV 196
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 4 KDGKLHRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK 63
+D K+ W + KKP PK +E+LM W+ +D P G P + +
Sbjct: 128 EDVKMQMVCRDWGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIE 179
Query: 64 EVVKTIFKRLFRVYAHIYHSH 84
++ FK+ Y + +
Sbjct: 180 PLLVGEFKKNNSNYGAVLTNR 200
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEV 65
E K V+YL+ W+E++ + F L +P NFK V
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSV 422
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEV 65
E K V+YL+ W+E++ + F L +P NFK V
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSV 422
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 41 ESQLDDESIFPQKLGAPFPSNFKEVVKTIFK 71
E ++ D+ I+ + GAP PS+ K V+K+I +
Sbjct: 224 EDEISDDVIY-ECCGAPRPSDLKAVLKSILE 253
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 73 LFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 132
L ++ A + ++ FQK +SL + +T + + + F KE G +Q ++ + +P
Sbjct: 96 LIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWGF----SKEKGEIQNILQKVNIP 151
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 73 LFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 132
L ++ A + ++ FQK +SL + +T + + + F KE G +Q ++ + +P
Sbjct: 96 LIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGF----SKEKGEIQNILQKVNIP 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,237,790
Number of Sequences: 62578
Number of extensions: 163732
Number of successful extensions: 323
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 18
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)