Query 032825
Match_columns 133
No_of_seqs 107 out of 401
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pi1_A MOB1A; mitotic EXIT net 100.0 2.1E-64 7.3E-69 390.9 15.6 131 2-132 52-183 (185)
2 2hjn_A MPS1 binder 1, maintena 100.0 1.4E-61 4.8E-66 386.8 15.4 129 2-131 105-235 (236)
3 1ae9_A Lambda integrase; DNA r 56.0 18 0.00061 24.7 4.6 31 42-75 88-118 (179)
4 3ee1_A Effector protein VIRA; 38.4 11 0.00037 30.3 1.2 44 25-73 147-190 (400)
5 1z19_A Integrase; protein-DNA 26.7 96 0.0033 22.2 4.7 30 42-74 191-220 (283)
6 3nkh_A Integrase; alpha-fold, 23.9 1.2E+02 0.004 21.6 4.7 28 44-71 148-176 (244)
7 1a0p_A Site-specific recombina 22.4 2E+02 0.0069 20.4 5.8 41 31-74 182-229 (290)
8 4aya_A DNA-binding protein inh 19.5 80 0.0027 21.4 2.8 25 28-52 68-92 (97)
9 1z1b_A Integrase; protein-DNA 19.1 1.4E+02 0.0049 22.3 4.5 29 43-74 265-293 (356)
10 4a8e_A XER A, probable tyrosin 18.3 1.5E+02 0.0052 21.3 4.3 53 23-75 163-217 (292)
No 1
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=2.1e-64 Score=390.90 Aligned_cols=131 Identities=62% Similarity=1.109 Sum_probs=128.7
Q ss_pred CCCCCCCC-CceEEeccCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 032825 2 TDKDGKLH-RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHI 80 (133)
Q Consensus 2 tcp~M~ag-~~~YlW~d~~~~kkp~~~sA~~YI~~~m~wi~~~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLfRvyaHi 80 (133)
|||+|+|| +|+|+|+|++++|||++|||||||+++|+||+++|+||++|||+.|++||++|.+.|++||||||||||||
T Consensus 52 tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHi 131 (185)
T 1pi1_A 52 SCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHI 131 (185)
T ss_dssp TCSSEESSTTCEECBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEecCCCCCCCcccCHHHHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 89999999 89999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCccccCcHHHHHHHhccc
Q 032825 81 YHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 132 (133)
Q Consensus 81 Y~~H~~~~~~l~~~~hlNt~fkhF~~F~~eF~Li~~kel~pL~~li~~l~~~ 132 (133)
|++||+.|.++|+|+|||||||||++|++||+||++||++||++||+.|+++
T Consensus 132 Y~~Hf~~~~~l~~e~hlNt~f~hF~~F~~ef~Li~~kel~Pl~~li~~~~~~ 183 (185)
T 1pi1_A 132 YHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSK 183 (185)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCSCGGGGGGGHHHHHHSSCC
T ss_pred HHHHHHHHHHcCCcceehhhHHHHHHHHHHhCCCCHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999864
No 2
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-61 Score=386.78 Aligned_cols=129 Identities=47% Similarity=0.830 Sum_probs=126.7
Q ss_pred CCCCCCCC-CceEEeccCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHH
Q 032825 2 TDKDGKLH-RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK-EVVKTIFKRLFRVYAH 79 (133)
Q Consensus 2 tcp~M~ag-~~~YlW~d~~~~kkp~~~sA~~YI~~~m~wi~~~l~de~iFPt~~~~~fp~~F~-~~v~~I~rrLfRvyaH 79 (133)
|||+|+|| +|+|+|+|+++ |+|++|||||||+++|+||+++|+||++|||+.|++||++|. +.|++|||||||||||
T Consensus 105 tCP~MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAH 183 (236)
T 2hjn_A 105 TCPRMIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAH 183 (236)
T ss_dssp TCSSCBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCcCCCCeeEEeccCCC-CCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 89999999 89999999976 789999999999999999999999999999999999999999 9999999999999999
Q ss_pred HhhhhHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCccccCcHHHHHHHhcc
Q 032825 80 IYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIV 131 (133)
Q Consensus 80 iY~~H~~~~~~l~~~~hlNt~fkhF~~F~~eF~Li~~kel~pL~~li~~l~~ 131 (133)
||++||+.|.++|+|+|||+|||||++|++||+||+++|++||++||+.|++
T Consensus 184 iY~~Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~ 235 (236)
T 2hjn_A 184 IYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD 235 (236)
T ss_dssp HHHHSHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC
T ss_pred HHHHHHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999975
No 3
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=56.02 E-value=18 Score=24.70 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=19.6
Q ss_pred HhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 032825 42 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 75 (133)
Q Consensus 42 ~~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLfR 75 (133)
..-.++-+||+..|.+... ..+.++++++.+
T Consensus 88 ~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~~ 118 (179)
T 1ae9_A 88 EILGGETIIASTRREPLSS---GTVSRYFMRARK 118 (179)
T ss_dssp HHTCCSBSSCCTTSCCCCH---HHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCcCCh---hHHHHHHHHHHH
Confidence 3456889999998876543 344455555443
No 4
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=38.44 E-value=11 Score=30.31 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=35.0
Q ss_pred cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 032825 25 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRL 73 (133)
Q Consensus 25 ~~~sA~~YI~~~m~wi~~~l~de~iFPt~~~~~fp~~F~~~v~~I~rrL 73 (133)
+--|||+-|+....-+.+.+-+...||.+. .+|-++-..|+|-+
T Consensus 147 thkpapevietaincctsiipnddyfpvkd-----tdfnsvwhdiyrdi 190 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKD-----TDFNSVWHDIYRDI 190 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCT-----TTTTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhccccCCCCcccccc-----CchhhHHHHHHHHh
Confidence 556899999999999999999999999985 34555555566543
No 5
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=26.67 E-value=96 Score=22.19 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=18.7
Q ss_pred HhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 032825 42 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 74 (133)
Q Consensus 42 ~~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLf 74 (133)
..-.++-+||+..|.+... ..+.+.++++.
T Consensus 191 ~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~ 220 (283)
T 1z19_A 191 EILGGETIIASTRREPLSS---GTVSRYFMRAR 220 (283)
T ss_dssp HHHCSSBSSCCTTSSCCCH---HHHHHHHHHHH
T ss_pred HhCCCCceEeCCCCCcCCh---hhHHHHHHHHH
Confidence 3446889999988876543 34444555543
No 6
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=23.94 E-value=1.2e+02 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.568 Sum_probs=17.5
Q ss_pred cCCCCCCCCCCCCCCCcc-hHHHHHHHHH
Q 032825 44 LDDESIFPQKLGAPFPSN-FKEVVKTIFK 71 (133)
Q Consensus 44 l~de~iFPt~~~~~fp~~-F~~~v~~I~r 71 (133)
-+++-+||+..|.+...+ +...++++.+
T Consensus 148 ~~~~~lF~~~~g~~~~~~~~~~~~~~~~~ 176 (244)
T 3nkh_A 148 LNRNFVFTNHKGNPMQTERFNKILREAAK 176 (244)
T ss_dssp CCCSBSSBCTTSSBCCHHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCCchhhHHHHHHHHHH
Confidence 478899999988765532 3334444433
No 7
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=22.38 E-value=2e+02 Score=20.41 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHh-------cCCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 032825 31 KYVEYLMDWIESQ-------LDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 74 (133)
Q Consensus 31 ~YI~~~m~wi~~~-------l~de~iFPt~~~~~fp~~F~~~v~~I~rrLf 74 (133)
+-+..+-.|++.. -.++-+||+..|.++.. ..+.++++++.
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~ 229 (290)
T 1a0p_A 182 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTR---QTFWHRIKHYA 229 (290)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccCCCCceeeCCCCCCCCH---HHHHHHHHHHH
Confidence 3444455566543 57889999988876543 34444555543
No 8
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=19.48 E-value=80 Score=21.38 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCC
Q 032825 28 SAPKYVEYLMDWIESQLDDESIFPQ 52 (133)
Q Consensus 28 sA~~YI~~~m~wi~~~l~de~iFPt 52 (133)
-|++||.++-+-.++.-.+...|-+
T Consensus 68 lAi~YI~~Lq~~L~~~~~~~~~~~~ 92 (97)
T 4aya_A 68 HVIDYILDLQIALDSHLKPSFLVQS 92 (97)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCC---
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhc
Confidence 3789999998888887777777754
No 9
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=19.09 E-value=1.4e+02 Score=22.29 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=17.9
Q ss_pred hcCCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 032825 43 QLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 74 (133)
Q Consensus 43 ~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLf 74 (133)
.-.++-+||+..|.+... ..+.+.++++.
T Consensus 265 ~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~ 293 (356)
T 1z1b_A 265 ILGGETIIASTRREPLSS---GTVSRYFMRAR 293 (356)
T ss_dssp HTCSSBSSCCTTSCCCCH---HHHHHHHHHHH
T ss_pred cCCCCceeeCCCCCcCCh---hHHHHHHHHHH
Confidence 456788999988876543 33444444443
No 10
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=18.29 E-value=1.5e+02 Score=21.27 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCcccCh-HHHHHHHHHHHHH-hcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 032825 23 KPIEVSA-PKYVEYLMDWIES-QLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 75 (133)
Q Consensus 23 kp~~~sA-~~YI~~~m~wi~~-~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLfR 75 (133)
++..+|- ++-++.+..|++. .-+++-+||+..|.+-.+-....+.+.++++.+
T Consensus 163 ~~r~vpl~~~~~~~l~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (292)
T 4a8e_A 163 KDRVVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGR 217 (292)
T ss_dssp CCEEEECCHHHHHHHHHHHHTCCSCCSBSCEECCSSCSEECCHHHHHHHHHHHHH
T ss_pred ceeEEEcCHHHHHHHHHHHHHhCcCCCcEEeecCCCCCCCCCHHHHHHHHHHHHH
Confidence 3333443 3445566666666 456788999987732222234555566665544
Done!