Query 032825
Match_columns 133
No_of_seqs 107 out of 401
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 10:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032825.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032825hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pi1a_ a.29.7.1 (A:) Mob1a {H 100.0 4.6E-65 3.3E-69 392.8 15.6 132 2-133 52-184 (185)
2 d2pfxa1 a.152.1.3 (A:1-190) Un 27.0 17 0.0013 24.6 2.4 7 73-79 39-45 (190)
3 d1x6aa1 g.39.1.3 (A:8-41) Lim 20.8 18 0.0013 18.9 1.1 13 1-13 18-30 (34)
4 d2d32a1 d.128.1.4 (A:1-518) Ga 18.3 74 0.0054 25.2 5.0 44 29-72 79-133 (518)
5 d1jk0a_ a.25.1.2 (A:) Ribonucl 18.2 46 0.0033 24.7 3.5 33 25-59 295-330 (334)
6 d1b5ea_ d.117.1.1 (A:) dCMP hy 17.6 9.3 0.00068 27.9 -0.8 13 79-91 216-228 (241)
7 d1iznb_ e.43.1.2 (B:) Capz bet 17.0 65 0.0047 23.8 4.0 37 47-83 76-112 (270)
8 d2ddha2 a.29.3.2 (A:475-655) P 16.7 64 0.0047 21.6 3.7 48 65-131 76-123 (181)
9 d1w07a2 a.29.3.2 (A:462-659) A 15.9 59 0.0043 22.1 3.4 23 109-131 111-133 (198)
10 d1i4ua_ b.60.1.1 (A:) Alpha-cr 15.0 18 0.0013 24.0 0.2 55 2-61 120-176 (181)
No 1
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.6e-65 Score=392.84 Aligned_cols=132 Identities=61% Similarity=1.093 Sum_probs=129.6
Q ss_pred CCCCCCCC-CceEEeccCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 032825 2 TDKDGKLH-RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHI 80 (133)
Q Consensus 2 tcp~M~ag-~~~YlW~d~~~~kkp~~~sA~~YI~~~m~wi~~~l~de~iFPt~~~~~fp~~F~~~v~~I~rrLfRvyaHi 80 (133)
|||.|+|| +++|+|+|++++|||++|||||||+++|+|++++|+||++|||+.|++||++|.++|++||||||||||||
T Consensus 52 tCP~M~ag~~~~Y~w~d~~~~kkp~~~sAp~Yi~~~~~w~~~~l~de~iFPtk~g~~fP~~F~~~vk~I~rrLfRVyaHi 131 (185)
T d1pi1a_ 52 SCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHI 131 (185)
T ss_dssp TCSSEESSTTCEECBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCCcceEEEEecCCCCCCCCcCCHHHHHHHHHHHHHHhccCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 89999999 99999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCccccCcHHHHHHHhcccC
Q 032825 81 YHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVPY 133 (133)
Q Consensus 81 Y~~H~~~~~~l~~~~hlNt~fkhF~~F~~eF~Li~~kel~pL~~li~~l~~~~ 133 (133)
|++||+.|.+||+++|||||||||++||+||+||+++|++||++||+.|.+++
T Consensus 132 Y~~Hf~~~~~l~~e~hlNt~FkHF~~f~~ef~Li~~kel~pL~~li~~l~~~~ 184 (185)
T d1pi1a_ 132 YHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSKD 184 (185)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCSCGGGGGGGHHHHHHSSCCC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHhCCCChHHccchHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998764
No 2
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=27.02 E-value=17 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=4.9
Q ss_pred HHHHHHH
Q 032825 73 LFRVYAH 79 (133)
Q Consensus 73 LfRvyaH 79 (133)
+||++||
T Consensus 39 ~~~~la~ 45 (190)
T d2pfxa1 39 VLKAYAF 45 (190)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 6777765
No 3
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.80 E-value=18 Score=18.87 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=9.7
Q ss_pred CCCCCCCCCCceE
Q 032825 1 MTDKDGKLHRYEY 13 (133)
Q Consensus 1 ~tcp~M~ag~~~Y 13 (133)
+|=|.|-||+..|
T Consensus 18 itGpvMvAG~~K~ 30 (34)
T d1x6aa1 18 MTGPFMVAGEFKY 30 (34)
T ss_dssp CCSCCBCCTTCCB
T ss_pred cccceeeeccccc
Confidence 4678999996555
No 4
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}
Probab=18.27 E-value=74 Score=25.21 Aligned_cols=44 Identities=14% Similarity=0.380 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCC-----------CCCcchHHHHHHHHHH
Q 032825 29 APKYVEYLMDWIESQLDDESIFPQKLGA-----------PFPSNFKEVVKTIFKR 72 (133)
Q Consensus 29 A~~YI~~~m~wi~~~l~de~iFPt~~~~-----------~fp~~F~~~v~~I~rr 72 (133)
|.++...+-+++...|+||.++|...-- .|..+.....|.++|+
T Consensus 79 ~l~~L~~lh~~~~~~l~~E~LWp~SMP~~l~~~~~I~iA~yg~sn~g~~k~~YR~ 133 (518)
T d2d32a1 79 MLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYRE 133 (518)
T ss_dssp HHHHHHHHHHHHHTSSTTCEECCSSSCCCCSCGGGSCBCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCCCCCCCCcccccccccCCccchHHHHHHHH
Confidence 5578888899999999999999975422 2444556666667765
No 5
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=18.17 E-value=46 Score=24.68 Aligned_cols=33 Identities=21% Similarity=0.539 Sum_probs=26.7
Q ss_pred cccChH---HHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 032825 25 IEVSAP---KYVEYLMDWIESQLDDESIFPQKLGAPFP 59 (133)
Q Consensus 25 ~~~sA~---~YI~~~m~wi~~~l~de~iFPt~~~~~fp 59 (133)
.-+++. +||.++-+-+-..|.-+.+|+++ .|||
T Consensus 295 ~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~~--NP~~ 330 (334)
T d1jk0a_ 295 LGMNADLMNQYVEFVADRLLVAFGNKKYYKVE--NPFD 330 (334)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCC--CCCG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCC
Confidence 345554 59999999999999999999875 5564
No 6
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=17.65 E-value=9.3 Score=27.92 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=11.4
Q ss_pred HHhhhhHHHHHhh
Q 032825 79 HIYHSHFQKIVSL 91 (133)
Q Consensus 79 HiY~~H~~~~~~l 91 (133)
|||-+|++.+.++
T Consensus 216 HIY~nh~~~v~~~ 228 (241)
T d1b5ea_ 216 HVYSRHFYLVDHW 228 (241)
T ss_dssp EEEGGGHHHHHHH
T ss_pred EEcHHHHHHHHHH
Confidence 9999999998764
No 7
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.98 E-value=65 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 032825 47 ESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHS 83 (133)
Q Consensus 47 e~iFPt~~~~~fp~~F~~~v~~I~rrLfRvyaHiY~~ 83 (133)
-+.||.-...++|.+-.+.+..-.-..|-+|..+|+.
T Consensus 76 NkY~P~~edg~~PS~~LR~LEi~aN~~Fd~Yr~lYYe 112 (270)
T d1iznb_ 76 NKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFE 112 (270)
T ss_dssp CCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCCCccCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556776677899999999999999999999999973
No 8
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.66 E-value=64 Score=21.59 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCccccCcHHHHHHHhcc
Q 032825 65 VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIV 131 (133)
Q Consensus 65 ~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hlNt~fkhF~~F~~eF~Li~~kel~pL~~li~~l~~ 131 (133)
.++.+.++|.++||=-. ++.++. .-.+++.|+++....+++.|..|+.
T Consensus 76 ~~k~vL~~L~~LyaL~~-----------i~~~~g--------~fl~~g~ls~~q~~~i~~~i~~L~~ 123 (181)
T d2ddha2 76 AVQAVLRNLCLLYSLYG-----------ISQKGG--------DFLEGSIITGAQLSQVNARILELLT 123 (181)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHTHH--------HHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHhHH--------HHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 56778888888876311 112222 2237888998888888888887764
No 9
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.95 E-value=59 Score=22.11 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=19.1
Q ss_pred HHhCCCCccccCcHHHHHHHhcc
Q 032825 109 CEFGLIDKKELGPLQELIDSIIV 131 (133)
Q Consensus 109 ~eF~Li~~kel~pL~~li~~l~~ 131 (133)
.+.+.|+++....+++.|..|+.
T Consensus 111 l~~~~ls~~q~~~l~~~i~~L~~ 133 (198)
T d1w07a2 111 LSTNCITPKQASLANDQLRSLYT 133 (198)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHH
Confidence 37788999988889998888875
No 10
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]}
Probab=14.98 E-value=18 Score=24.03 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCCCCCCC-CceEEeccCCCCCCCcccChHHHHHHHHHHHHHh-cCCCCCCCCCCCCCCCcc
Q 032825 2 TDKDGKLH-RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQ-LDDESIFPQKLGAPFPSN 61 (133)
Q Consensus 2 tcp~M~ag-~~~YlW~d~~~~kkp~~~sA~~YI~~~m~wi~~~-l~de~iFPt~~~~~fp~~ 61 (133)
+|.++..+ +.+++|.=.+ .| -..++.++.+.+.+.+. ++-+++.++..+..-|.+
T Consensus 120 ~c~~~~~~~~~~~~wIlsR---~p--~l~~~~~~~~~~~~~~~G~d~~~l~~~~Q~~~C~~~ 176 (181)
T d1i4ua_ 120 SCIDYNFGYHSDFSFIFSR---SA--NLADQYVKKCEAAFKNINVDTTRFVKTVQGSSCPYD 176 (181)
T ss_dssp EEEECTTSEEEEEEEEEES---SS--SCCHHHHHHHHHHHHHTTCCGGGEEECCCSTTSCHH
T ss_pred EeeeccCCCceeEEEEEec---CC--CCCHHHHHHHHHHHHHcCCCHHHeEECCCCCCCCCC
Confidence 46677777 7889998654 22 23567788888888766 555677777665444443
Done!