Your job contains 1 sequence.
>032827
MEGDDMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLA
NREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP
RFRMPMRYSPYY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032827
(132 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 216 9.5e-18 1
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 208 1.1e-17 2
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 132 7.3e-11 2
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 105 1.0e-10 2
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 127 1.7e-10 2
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 128 2.2e-10 2
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 113 6.6e-09 2
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 111 7.4e-09 2
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 114 9.6e-09 2
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 113 1.0e-08 2
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 113 1.0e-08 2
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 113 1.0e-08 2
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 113 1.0e-08 2
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 113 1.2e-08 2
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 110 1.5e-08 2
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 110 1.5e-08 2
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 111 2.6e-08 2
RGD|619928 - symbol:Pabpn1 "poly(A) binding protein, nucl... 116 3.8e-07 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 107 4.8e-06 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 106 5.6e-06 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 106 5.6e-06 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 100 2.9e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 84 0.00048 2
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 41/71 (57%), Positives = 48/71 (67%)
Query: 61 NREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
N E+ R + V+ KRTNVPGMKQ+ P R NP M Y+ R +PP+ YSPYGYGK P
Sbjct: 149 NESELHGRQL---KVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAP 205
Query: 121 RFRMPMRYSPY 131
RFR PMRY PY
Sbjct: 206 RFRRPMRYMPY 216
Score = 188 (71.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 5 DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D+DM + V EL +MK RLKEMEEEA ALR+M AKV EM + QDPA+ ++ +E
Sbjct: 25 DIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKE 84
Query: 64 EVDSRSVFVGNV 75
EVD+RSV+VGNV
Sbjct: 85 EVDARSVYVGNV 96
Score = 34 (17.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 86 KQHRPRRPNPFMVYQ 100
K R RRP +M YQ
Sbjct: 203 KAPRFRRPMRYMPYQ 217
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 40/71 (56%), Positives = 48/71 (67%)
Query: 61 NREEVDSRSVFVGNVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
N E+ R + V KRTNVPG+KQ R RR NP+M Y+ R + P++YSPYGYGK P
Sbjct: 152 NESELHGRQL---KVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAP 208
Query: 121 RFRMPMRYSPY 131
RFR PMRY PY
Sbjct: 209 RFRRPMRYMPY 219
Score = 195 (73.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 43/72 (59%), Positives = 55/72 (76%)
Query: 5 DMDMIETENKQV-ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D+DM ++ V ELD+MK RLKEME+EA ALR+M AKV EM + QDPA+ ++ A +E
Sbjct: 29 DLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKE 87
Query: 64 EVDSRSVFVGNV 75
EVD+RSVFVGNV
Sbjct: 88 EVDARSVFVGNV 99
Score = 34 (17.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 86 KQHRPRRPNPFMVYQ 100
K R RRP +M YQ
Sbjct: 206 KAPRFRRPMRYMPYQ 220
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 132 (51.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S AA SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 75 V 75
V
Sbjct: 103 V 103
Score = 34 (17.0 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 75 VTVKRTNVPGM 85
V KRTN PG+
Sbjct: 168 VMSKRTNRPGL 178
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 105 (42.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 5 DMDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE 64
D D ++T+ K EL +MK R+ EME EA LR M ++ NE + ++ ++E
Sbjct: 3 DQDALDTQEK--ELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 51
Query: 65 VDSRSVFVGNV 75
+D++SV+VGNV
Sbjct: 52 IDAQSVYVGNV 62
Score = 57 (25.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 75 VTVKRTNVPGMKQHRPR 91
VT KRTNVPGM + R R
Sbjct: 127 VTPKRTNVPGMSRGRGR 143
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 127 (49.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKV-----GNEMASKQDPAAGGSSLAN--R 62
ET + EL++MK R +EMEEEA L ++ + GN GG L N +
Sbjct: 36 ETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQ 95
Query: 63 EEVDSRSVFVGNVTVKRTN 81
EE+DSRSV+VGNV K T+
Sbjct: 96 EEIDSRSVYVGNVDYKSTH 114
Score = 36 (17.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 75 VTVKRTNVPG-MKQH-RPRRPNPFMVYQSRGAI 105
+T KRTN+P M+Q P F + RG I
Sbjct: 173 ITPKRTNLPYYMRQGVLPPGRGGFRGGRGRGGI 205
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 128 (50.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGN 74
EL+ +K R+KEMEEEA ++QM ++V +MA S A SL ++E+D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 75 V 75
V
Sbjct: 103 V 103
Score = 34 (17.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 75 VTVKRTNVPGM 85
V KRTN PG+
Sbjct: 168 VMSKRTNRPGL 178
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 113 (44.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 74 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 129
Query: 58 -SLANREEVDSRSVFVGNV 75
S+ + E D+RS++VGNV
Sbjct: 130 MSIEEKMEADARSIYVGNV 148
Score = 42 (19.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 204 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 263
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 264 GRARATSWYSPY 275
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 111 (44.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 74 NV 75
NV
Sbjct: 169 NV 170
Score = 45 (20.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 22/71 (30%), Positives = 27/71 (38%)
Query: 69 SVFVGN---VTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
S+F G V KRTN PG+ R R Y SR + P G
Sbjct: 226 SLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRG 285
Query: 121 RFRMPMRYSPY 131
R R+ Y+PY
Sbjct: 286 RARVTSWYTPY 296
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 114 (45.2 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 2 EGDDMDMIETEN-----KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG 56
E ++ ++ET+ + EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 94 EEEEPGLVETDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAG 153
Query: 57 S---SLANREEVDSRSVFVGNV 75
SL + E D+RS++VGNV
Sbjct: 154 PVIMSLEEKMEADARSIYVGNV 175
Score = 41 (19.5 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 231 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRIYR 290
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 291 GRARATSWYSPY 302
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGNV 75
S+ + E D+RS++VGNV
Sbjct: 161 MSIEEKMEADARSIYVGNV 179
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 235 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 294
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGNV 75
S+ + E D+RS++VGNV
Sbjct: 161 MSIEEKMEADARSIYVGNV 179
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 235 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 294
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGNV 75
S+ + E D+RS++VGNV
Sbjct: 161 MSIEEKMEADARSIYVGNV 179
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 235 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 294
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 113 (44.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MEGDDMD-MIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS-- 57
+EGD D IE EL+ +K R++EMEEEA L+++ +V +M P G
Sbjct: 105 VEGDPGDGAIEDP----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 58 -SLANREEVDSRSVFVGNV 75
S+ + E D+RS++VGNV
Sbjct: 161 MSIEEKMEADARSIYVGNV 179
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 235 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 294
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 295 GRARATSWYSPY 306
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 113 (44.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 74 NV 75
NV
Sbjct: 174 NV 175
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 231 SLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSRFYSGFNSRPRGRIYR 290
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 291 GRARATSWYSPY 302
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 110 (43.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 74 NV 75
NV
Sbjct: 168 NV 169
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 22/71 (30%), Positives = 26/71 (36%)
Query: 69 SVFVGN---VTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
S+F G V KRTN PG+ R R Y SR + P G
Sbjct: 225 SLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRG 284
Query: 121 RFRMPMRYSPY 131
R R Y+PY
Sbjct: 285 RARATSWYTPY 295
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 110 (43.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 74 NV 75
NV
Sbjct: 169 NV 170
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 22/71 (30%), Positives = 26/71 (36%)
Query: 69 SVFVGN---VTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 120
S+F G V KRTN PG+ R R Y SR + P G
Sbjct: 226 SLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRG 285
Query: 121 RFRMPMRYSPY 131
R R Y+PY
Sbjct: 286 RARATSWYTPY 296
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 111 (44.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 3 GDD---MDMIETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG--S 57
GD+ +D E + EL+ +K R++EMEEEA L+++ +V +M + P AG
Sbjct: 29 GDEEPGLDEGEAAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQM-NLSPPPAGPVIM 87
Query: 58 SLANREEVDSRSVFVGNV 75
S+ + E D RS++VGNV
Sbjct: 88 SIEEKIEADGRSIYVGNV 105
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 69 SVFVGN---VTVKRTNVPGMKQHRPRRPNPFMVYQSRG 103
S+F G V KRTN PG+ R P ++SRG
Sbjct: 161 SLFRGRQIKVGAKRTNRPGIST--TDRGFPRARFRSRG 196
>RGD|619928 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
RGD:619928 GO:GO:0005634 eggNOG:NOG238057 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD UniGene:Rn.39199 EMBL:U94858 IPI:IPI00195515
STRING:O08729 UCSC:RGD:619928 InParanoid:O08729
Genevestigator:O08729 Uniprot:O08729
Length = 85
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVG 73
EL+ +K R++EMEEEA L+++ +V +M P G SL + E D+RS++VG
Sbjct: 19 ELEAIKARVREMEEEADKLKELQNEVXKQMXMSPPPGNAGPVIMSLEEKMEADARSIYVG 78
Query: 74 NV 75
NV
Sbjct: 79 NV 80
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 107 (42.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV 75
E+ MK R+ EMEEEA LR+M A + ++ Q+ S +R++VDSRS+FVGNV
Sbjct: 30 EISAMKKRVAEMEEEAAKLREMQASLDSQ---SQE-----LSTESRDDVDSRSIFVGNV 80
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 106 (42.4 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 7 DMIETENKQV---ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D I EN+QV +++K +L+EME+E LR++H+++ +E + + +
Sbjct: 3 DQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKR 58
Query: 64 EVDSRSVFVGNVTVKRTNVPGMKQH 88
+ D+RS+++GNV T + ++QH
Sbjct: 59 DTDARSIYIGNVDYGSTPLE-LQQH 82
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 106 (42.4 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 7 DMIETENKQV---ELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANRE 63
D I EN+QV +++K +L+EME+E LR++H+++ +E + + +
Sbjct: 3 DQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKR 58
Query: 64 EVDSRSVFVGNVTVKRTNVPGMKQH 88
+ D+RS+++GNV T + ++QH
Sbjct: 59 DTDARSIYIGNVDYGSTPLE-LQQH 82
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 100 (40.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 10 ETENKQVELDDMKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS 69
E + + E++ MK R+ EME EA LR+M A + + S ++ ++E++D+RS
Sbjct: 19 EGGDDEEEIEAMKRRVAEMESEAAKLREMQATLDQQSESLKE---------DKEDIDARS 69
Query: 70 VFVGNV 75
+FVGNV
Sbjct: 70 IFVGNV 75
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 84 (34.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 28 MEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNV 75
MEEEA L+++ +V +M P G S+ + E D+RS++VGNV
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNV 51
Score = 42 (19.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 25/72 (34%), Positives = 27/72 (37%)
Query: 69 SVFVGN---VTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKI 119
S+F G V KRTN PG+ R PR R SR F P G
Sbjct: 107 SLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 166
Query: 120 PRFRMPMRYSPY 131
R R YSPY
Sbjct: 167 GRARATSWYSPY 178
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 132 132 0.00091 102 3 11 22 0.43 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 492 (52 KB)
Total size of DFA: 111 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.51u 0.23s 16.74t Elapsed: 00:00:01
Total cpu time: 16.51u 0.23s 16.74t Elapsed: 00:00:01
Start: Fri May 10 05:18:39 2013 End: Fri May 10 05:18:40 2013