BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032827
         (132 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 714

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 88  HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSP 130
           HR  R    MV  ++G    PF++S   YG+  +FR P   +P
Sbjct: 485 HRRLRLGNLMVLTAQGT---PFIHSGQEYGRTKQFRNPAYRTP 524


>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua In Complex With An
           Inhibitor
          Length = 708

 Score = 28.9 bits (63), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 88  HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSP 130
           HR  R    MV  ++G    PF++S   YG+  +FR P   +P
Sbjct: 486 HRRLRLGNLMVLTAQGT---PFIHSGQEYGRTKQFRNPAYRTP 525


>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 1014

 Score = 28.9 bits (63), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 88  HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSP 130
           HR  R    MV  ++G    PF++S   YG+  +FR P   +P
Sbjct: 792 HRRLRLGNLMVLTAQGT---PFIHSGQEYGRTKQFRNPAYRTP 831


>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
           Maltophilia
 pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
           Maltophilia
          Length = 357

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 110 LYSPYGYGKIPRFRMPMRYSPY 131
           L+SP G+  IP + MP    PY
Sbjct: 51  LFSPAGWSSIPGWPMPASQGPY 72


>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain
          Of Xenopus Laevis Epabp2
 pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain
          Of Xenopus Laevis Epabp2
          Length = 124

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 58 SLANREEVDSRSVFVGNV 75
          S   ++E+D RSV+VGNV
Sbjct: 27 SAEEKKEIDKRSVYVGNV 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,832,355
Number of Sequences: 62578
Number of extensions: 133261
Number of successful extensions: 265
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 9
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)