Query 032827
Match_columns 132
No_of_seqs 137 out of 217
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xze_Q Charged multivesicular 75.6 0.74 2.5E-05 28.1 0.5 14 15-28 25-38 (40)
2 1s79_A Lupus LA protein; RRM, 74.6 0.88 3E-05 30.6 0.8 14 62-75 6-19 (103)
3 3pgw_S U1-70K; protein-RNA com 72.0 4.5 0.00016 34.0 4.7 12 64-75 99-110 (437)
4 2cq4_A RNA binding motif prote 70.9 1.4 4.6E-05 29.2 1.0 19 57-75 15-33 (114)
5 2dgo_A Cytotoxic granule-assoc 70.3 2.2 7.5E-05 28.1 2.0 19 57-75 5-23 (115)
6 3s7r_A Heterogeneous nuclear r 69.1 1.8 6.1E-05 27.1 1.2 15 61-75 5-19 (87)
7 3r4h_A Coiled coil helix CC-TE 69.0 6.2 0.00021 23.0 3.4 20 17-36 3-22 (34)
8 3ucg_A Polyadenylate-binding p 68.8 0.73 2.5E-05 28.9 -0.7 12 64-75 3-14 (89)
9 3r4h_A Coiled coil helix CC-TE 68.6 5.6 0.00019 23.2 3.2 23 15-37 8-30 (34)
10 2cpe_A RNA-binding protein EWS 68.3 3 0.0001 27.3 2.3 16 60-75 8-23 (113)
11 1ic2_A Tropomyosin alpha chain 66.6 11 0.00038 24.9 4.9 31 15-45 40-74 (81)
12 2cpz_A CUG triplet repeat RNA- 66.6 4.6 0.00016 26.6 3.0 18 58-75 16-33 (115)
13 2cph_A RNA binding motif prote 66.5 3.6 0.00012 26.6 2.3 18 58-75 6-23 (107)
14 2fc9_A NCL protein; structure 66.3 3.6 0.00012 26.4 2.3 14 62-75 10-23 (101)
15 2cqg_A TDP-43, TAR DNA-binding 65.5 3.9 0.00013 26.4 2.4 18 58-75 6-23 (103)
16 2d9p_A Polyadenylate-binding p 65.4 3.9 0.00013 26.3 2.4 17 59-75 7-23 (103)
17 2dnh_A Bruno-like 5, RNA bindi 64.9 3.9 0.00013 26.4 2.3 15 61-75 9-23 (105)
18 2cqd_A RNA-binding region cont 64.7 4.2 0.00015 26.8 2.5 18 58-75 8-25 (116)
19 2cpj_A Non-POU domain-containi 64.6 3.9 0.00013 26.2 2.3 18 58-75 6-23 (99)
20 2lcw_A RNA-binding protein FUS 67.7 1.4 4.9E-05 29.3 0.0 14 62-75 2-15 (116)
21 2cpd_A Apobec-1 stimulating pr 63.8 4.2 0.00014 26.1 2.3 18 59-76 7-24 (99)
22 4f6r_C Stathmin-like domain R1 63.2 12 0.0004 26.2 4.6 32 15-46 41-77 (87)
23 2cqi_A Nucleolysin TIAR; RNA r 62.9 4.3 0.00015 26.1 2.2 15 61-75 9-23 (103)
24 3azd_A Short alpha-tropomyosin 62.8 3.5 0.00012 24.2 1.6 21 16-36 4-24 (37)
25 4dzn_A Coiled-coil peptide CC- 62.5 12 0.0004 21.7 3.7 20 17-36 3-22 (33)
26 2yy0_A C-MYC-binding protein; 61.8 10 0.00034 23.8 3.7 22 15-36 18-39 (53)
27 2jwn_A Embryonic polyadenylate 60.3 1.8 6.1E-05 29.0 -0.1 19 57-75 26-44 (124)
28 4dzo_A Mitotic spindle assembl 60.2 14 0.00047 26.7 4.7 33 14-46 2-34 (123)
29 2jvo_A Nucleolar protein 3; nu 59.7 3.3 0.00011 27.7 1.2 19 57-75 21-39 (108)
30 2l5g_B Putative uncharacterize 59.6 7 0.00024 24.1 2.5 10 21-30 28-37 (42)
31 2cq3_A RNA-binding protein 9; 59.4 5.7 0.00019 25.5 2.3 17 59-75 7-23 (103)
32 2err_A Ataxin-2-binding protei 58.6 3.9 0.00013 27.1 1.4 19 57-75 19-37 (109)
33 2fc8_A NCL protein; structure 57.7 6.4 0.00022 25.2 2.3 15 61-75 9-23 (102)
34 2cq0_A Eukaryotic translation 57.6 5.4 0.00018 25.7 2.0 16 60-75 8-23 (103)
35 2do4_A Squamous cell carcinoma 57.0 7.1 0.00024 24.9 2.5 17 59-75 9-25 (100)
36 4dzn_A Coiled-coil peptide CC- 56.9 14 0.00048 21.3 3.4 23 15-37 8-30 (33)
37 2m2b_A RNA-binding protein 10; 56.9 7.6 0.00026 26.4 2.7 18 58-75 14-31 (131)
38 2khc_A Testis-specific RNP-typ 56.6 7.6 0.00026 25.5 2.6 18 58-75 31-48 (118)
39 1u6f_A Tcubp1, RNA-binding pro 56.5 5.7 0.0002 26.9 2.0 18 58-75 33-50 (139)
40 2cpy_A RNA-binding protein 12; 56.4 6.6 0.00023 26.1 2.3 14 62-75 10-23 (114)
41 2dgp_A Bruno-like 4, RNA bindi 55.4 4.9 0.00017 25.9 1.5 15 61-75 7-21 (106)
42 2ytc_A PRE-mRNA-splicing facto 55.1 6.3 0.00021 24.3 1.9 12 64-75 9-20 (85)
43 2hzc_A Splicing factor U2AF 65 54.5 3.3 0.00011 25.6 0.5 11 65-75 4-14 (87)
44 1x5p_A Negative elongation fac 54.5 7.9 0.00027 24.7 2.4 18 58-75 6-23 (97)
45 2kvi_A Nuclear polyadenylated 54.1 4.5 0.00015 25.9 1.1 18 64-81 7-24 (96)
46 1yyb_A Programmed cell death p 54.0 8.8 0.0003 21.1 2.2 18 15-41 4-21 (27)
47 1x5u_A Splicing factor 3B subu 53.9 7.8 0.00027 24.9 2.3 14 62-75 10-23 (105)
48 1x4a_A Splicing factor, argini 53.7 11 0.00038 24.4 3.0 17 59-75 14-30 (109)
49 1zme_C Proline utilization tra 53.1 16 0.00054 22.3 3.6 22 16-37 44-65 (70)
50 1x4h_A RNA-binding protein 28; 53.0 8.4 0.00029 24.9 2.3 14 62-75 10-23 (111)
51 1x5o_A RNA binding motif, sing 52.9 7 0.00024 25.6 1.9 18 58-75 16-33 (114)
52 2yy0_A C-MYC-binding protein; 52.8 33 0.0011 21.3 5.0 25 12-36 22-46 (53)
53 3nmr_A Cugbp ELAV-like family 52.6 3.9 0.00013 27.8 0.6 10 66-75 2-11 (175)
54 1p27_B RNA-binding protein 8A; 51.9 5.2 0.00018 25.8 1.2 14 62-75 18-31 (106)
55 1use_A VAsp, vasodilator-stimu 51.3 22 0.00077 22.0 3.9 23 15-37 6-29 (45)
56 2dnp_A RNA-binding protein 14; 51.0 6.6 0.00023 24.7 1.5 12 64-75 6-17 (90)
57 1kd8_B GABH BLL, GCN4 acid bas 50.9 25 0.00087 20.9 3.9 24 17-40 9-32 (36)
58 3kqg_A Langerin, C-type lectin 49.7 12 0.0004 26.5 2.8 24 16-39 16-39 (182)
59 3mdf_A Peptidyl-prolyl CIS-tra 49.3 6.5 0.00022 24.1 1.3 12 64-75 4-15 (85)
60 2krb_A Eukaryotic translation 49.2 5.5 0.00019 24.6 0.9 10 67-76 1-10 (81)
61 2lea_A Serine/arginine-rich sp 48.7 8.3 0.00028 26.7 1.9 15 61-75 41-55 (135)
62 2e5h_A Zinc finger CCHC-type a 47.5 13 0.00043 23.2 2.5 14 62-75 11-24 (94)
63 1wf0_A TDP-43, TAR DNA-binding 47.3 6.9 0.00024 24.5 1.2 11 65-75 3-13 (88)
64 2dh8_A DAZ-associated protein 46.8 9.7 0.00033 24.5 1.9 15 61-75 10-24 (105)
65 2ku7_A MLL1 PHD3-CYP33 RRM chi 46.7 13 0.00045 24.8 2.6 16 60-75 56-71 (140)
66 1fjc_A Nucleolin RBD2, protein 46.4 6.3 0.00021 24.9 0.9 15 61-75 10-24 (96)
67 3qh9_A Liprin-beta-2; coiled-c 46.4 34 0.0012 23.6 4.6 17 16-32 26-42 (81)
68 2dnl_A Cytoplasmic polyadenyla 46.2 6.9 0.00024 26.0 1.1 11 65-75 6-16 (114)
69 2e5g_A U6 snRNA-specific termi 45.6 8.3 0.00028 24.5 1.4 11 65-75 6-16 (94)
70 2l5g_A GPS2 protein, G protein 45.5 40 0.0014 20.3 4.2 26 16-41 8-33 (38)
71 1fj7_A Nucleolin RBD1, protein 45.3 11 0.00036 24.1 1.8 12 64-75 14-25 (101)
72 1whw_A Hypothetical protein ri 45.3 7.2 0.00025 24.8 1.0 12 64-75 5-16 (99)
73 2fcw_A Alpha-2-macroglobulin r 45.2 37 0.0013 24.5 4.9 30 14-43 22-51 (109)
74 2la4_A Nuclear and cytoplasmic 45.2 8.5 0.00029 24.6 1.4 11 65-75 25-35 (101)
75 1oo0_B CG8781-PA, drosophila Y 45.2 7.6 0.00026 25.2 1.1 14 62-75 21-34 (110)
76 2ywk_A Putative RNA-binding pr 45.1 6.2 0.00021 24.8 0.7 14 62-75 11-24 (95)
77 2jrs_A RNA-binding protein 39; 45.0 10 0.00035 25.1 1.8 18 58-75 17-34 (108)
78 1kd8_A GABH AIV, GCN4 acid bas 44.7 48 0.0016 19.7 4.8 26 16-41 8-33 (36)
79 1t3j_A Mitofusin 1; coiled coi 44.7 35 0.0012 24.0 4.6 21 20-40 51-71 (96)
80 2cpf_A RNA binding motif prote 44.4 7.7 0.00026 24.6 1.1 11 65-75 3-13 (98)
81 2e44_A Insulin-like growth fac 44.3 17 0.00058 22.8 2.7 11 65-75 13-23 (96)
82 1nkp_B MAX protein, MYC proto- 44.3 41 0.0014 21.9 4.7 31 17-47 48-78 (83)
83 2dng_A Eukaryotic translation 44.3 12 0.0004 24.1 1.9 12 64-75 12-23 (103)
84 2cqh_A IGF-II mRNA-binding pro 44.0 9.3 0.00032 24.0 1.4 11 65-75 6-16 (93)
85 2cqc_A Arginine/serine-rich sp 43.9 11 0.00039 23.5 1.8 13 63-75 11-23 (95)
86 2dgt_A RNA-binding protein 30; 43.4 8.8 0.0003 24.2 1.2 12 64-75 7-18 (92)
87 1x4b_A Heterogeneous nuclear r 43.4 8.2 0.00028 25.4 1.1 18 58-75 18-35 (116)
88 2rs2_A Musashi-1, RNA-binding 43.3 7.2 0.00025 25.8 0.8 18 58-75 16-33 (109)
89 2g4b_A Splicing factor U2AF 65 43.2 6.2 0.00021 26.9 0.5 10 66-75 3-12 (172)
90 4a8x_A RNA-binding protein wit 43.2 8.6 0.00029 23.6 1.1 11 65-75 2-12 (88)
91 1q0v_A Hydrophilic protein; ha 43.2 24 0.00083 24.2 3.5 22 12-33 52-74 (81)
92 2fy1_A RNA-binding motif prote 43.0 8.8 0.0003 25.8 1.2 12 64-75 4-15 (116)
93 2dgs_A DAZ-associated protein 43.0 9.1 0.00031 24.3 1.2 12 64-75 7-18 (99)
94 2ic9_A Nucleocapsid protein; h 42.8 5.4 0.00018 28.4 0.1 48 17-75 6-57 (96)
95 3ex7_B RNA-binding protein 8A; 42.7 9 0.00031 25.5 1.2 14 62-75 17-30 (126)
96 1p1t_A Cleavage stimulation fa 42.6 4.3 0.00015 26.0 -0.4 12 64-75 5-16 (104)
97 2voo_A Lupus LA protein; RNA-b 42.4 2.9 0.0001 31.0 -1.4 15 61-75 103-117 (193)
98 2e5j_A Methenyltetrahydrofolat 42.4 20 0.00068 22.7 2.8 12 64-75 16-27 (97)
99 2cpi_A CCR4-NOT transcription 42.2 16 0.00053 24.1 2.4 20 58-77 6-25 (111)
100 2dnm_A SRP46 splicing factor; 41.9 10 0.00035 24.3 1.4 12 64-75 10-21 (103)
101 2k48_A Nucleoprotein; viral pr 41.6 13 0.00044 26.9 2.0 47 16-73 35-85 (107)
102 1bf5_A Signal transducer and a 41.6 30 0.001 31.1 4.8 29 15-43 8-36 (575)
103 3vp9_A General transcriptional 41.2 29 0.001 24.3 3.7 22 16-37 50-71 (92)
104 1ci6_A Transcription factor AT 41.0 37 0.0013 21.5 3.9 13 19-31 26-38 (63)
105 3bs9_A Nucleolysin TIA-1 isofo 40.8 7.4 0.00025 23.9 0.5 10 66-75 5-14 (87)
106 2div_A TRNA selenocysteine ass 40.5 12 0.00039 23.8 1.4 11 65-75 7-17 (99)
107 1q08_A Zn(II)-responsive regul 40.4 46 0.0016 21.5 4.5 29 18-46 41-69 (99)
108 1qm9_A Polypyrimidine tract-bi 40.3 9.6 0.00033 26.9 1.1 13 65-77 1-13 (198)
109 1x5s_A Cold-inducible RNA-bind 40.2 14 0.00048 23.5 1.8 12 64-75 9-20 (102)
110 3egn_A RNA-binding protein 40; 40.2 11 0.00036 25.8 1.3 11 65-75 43-53 (143)
111 2xs2_A Deleted in azoospermia- 40.2 6 0.00021 25.4 0.0 13 63-75 5-17 (102)
112 1htn_A Tetranectin; plasminoge 40.1 18 0.00062 25.8 2.6 27 14-40 20-46 (182)
113 2ve7_A Kinetochore protein HEC 40.0 39 0.0013 27.4 4.9 24 15-38 184-207 (315)
114 1wi8_A EIF-4B, eukaryotic tran 39.8 15 0.00051 23.6 1.9 12 64-75 12-23 (104)
115 3nmd_A CGMP dependent protein 39.7 58 0.002 21.9 4.9 28 17-44 34-65 (72)
116 1h2v_Z 20 kDa nuclear CAP bind 39.5 11 0.00038 26.1 1.3 15 61-75 33-47 (156)
117 2dis_A Unnamed protein product 39.3 9.1 0.00031 24.7 0.8 12 64-75 5-16 (109)
118 2dnq_A RNA-binding protein 4B; 39.2 8.5 0.00029 24.1 0.6 11 65-75 6-16 (90)
119 2x1f_A MRNA 3'-END-processing 38.9 9.9 0.00034 24.1 0.9 9 67-75 2-10 (96)
120 2do0_A HnRNP M, heterogeneous 38.9 19 0.00065 23.3 2.4 12 64-75 12-23 (114)
121 1x4e_A RNA binding motif, sing 38.9 10 0.00036 23.3 1.0 10 66-75 4-13 (85)
122 2xnq_A Nuclear polyadenylated 38.8 10 0.00035 24.5 1.0 20 61-80 16-35 (97)
123 1x5t_A Splicing factor 3B subu 38.7 11 0.00036 23.7 1.0 11 65-75 3-13 (96)
124 1x4g_A Nucleolysin TIAR; struc 38.4 11 0.00037 24.5 1.1 13 63-75 21-33 (109)
125 2cqb_A Peptidyl-prolyl CIS-tra 38.0 16 0.00056 23.1 1.9 12 64-75 9-20 (102)
126 1hwt_C Protein (heme activator 37.9 12 0.0004 23.6 1.2 20 16-35 58-77 (81)
127 2dnz_A Probable RNA-binding pr 37.0 12 0.0004 23.5 1.0 10 66-75 4-13 (95)
128 1k1f_A Breakpoint cluster regi 36.9 66 0.0023 21.6 4.8 34 12-45 29-66 (72)
129 2dgv_A HnRNP M, heterogeneous 36.8 12 0.00041 23.3 1.0 11 65-75 6-16 (92)
130 2j76_E EIF-4B, EIF4B, eukaryot 36.7 10 0.00036 24.4 0.8 14 63-76 15-28 (100)
131 1wg1_A KIAA1579 protein, homol 36.7 14 0.00049 23.1 1.4 11 66-76 4-14 (88)
132 3smz_A Protein raver-1, ribonu 36.5 24 0.00082 26.3 2.9 11 65-75 20-30 (284)
133 1l3k_A Heterogeneous nuclear r 36.5 10 0.00034 26.4 0.7 13 63-75 9-21 (196)
134 2cjk_A Nuclear polyadenylated 36.4 9.2 0.00031 25.9 0.5 10 66-75 2-11 (167)
135 1hjb_A Ccaat/enhancer binding 36.3 44 0.0015 22.9 3.9 18 19-36 39-56 (87)
136 2cpx_A Hypothetical protein FL 36.1 19 0.00064 23.4 2.0 12 64-75 22-33 (115)
137 1uix_A RHO-associated kinase; 35.7 40 0.0014 22.6 3.6 23 15-37 10-32 (71)
138 3mtu_A Tropomyosin alpha-1 cha 35.6 64 0.0022 21.2 4.6 15 18-32 4-18 (75)
139 2a3j_A U1 small nuclear ribonu 35.5 18 0.0006 25.3 1.9 9 67-75 29-37 (127)
140 3n9u_C Cleavage and polyadenyl 35.0 11 0.00039 26.9 0.8 11 65-75 53-63 (156)
141 2dgu_A Heterogeneous nuclear r 34.7 18 0.00062 23.2 1.7 11 65-75 9-19 (103)
142 1uo4_A General control protein 34.6 66 0.0023 18.8 3.9 22 17-38 9-30 (34)
143 2dgx_A KIAA0430 protein; RRM d 34.5 12 0.0004 24.0 0.8 11 65-75 7-17 (96)
144 3m48_A General control protein 34.5 67 0.0023 18.7 3.9 22 17-38 8-29 (33)
145 1t3j_A Mitofusin 1; coiled coi 34.5 64 0.0022 22.7 4.6 28 15-42 53-80 (96)
146 2ki2_A SS-DNA binding protein 34.3 10 0.00035 23.6 0.4 8 68-75 2-9 (90)
147 1bg1_A Protein (transcription 34.2 46 0.0016 30.0 4.8 29 15-43 19-47 (596)
148 1fje_B Nucleolin RBD12, protei 34.1 15 0.00053 25.1 1.3 14 62-75 8-21 (175)
149 3u59_A Tropomyosin beta chain; 34.1 74 0.0025 21.5 4.9 29 15-43 43-75 (101)
150 1whx_A Hypothetical protein ri 33.9 11 0.00038 25.0 0.5 12 64-75 7-18 (111)
151 2dgw_A Probable RNA-binding pr 33.5 16 0.00054 22.8 1.2 12 64-75 7-18 (91)
152 3tnu_B Keratin, type II cytosk 32.6 78 0.0027 22.2 4.9 32 14-45 34-65 (129)
153 2ic6_A Nucleocapsid protein; h 32.6 21 0.00073 24.4 1.8 45 17-72 6-54 (78)
154 3md3_A Nuclear and cytoplasmic 32.6 13 0.00045 24.8 0.7 8 68-75 1-8 (166)
155 1buu_A Protein (mannose-bindin 32.4 48 0.0017 23.3 3.8 25 14-38 21-45 (168)
156 2lw1_A ABC transporter ATP-bin 32.4 51 0.0017 21.8 3.7 20 15-34 21-40 (89)
157 4f02_A Polyadenylate-binding p 32.3 14 0.00047 26.9 0.9 10 66-75 14-23 (213)
158 2yh0_A Splicing factor U2AF 65 32.1 14 0.00048 25.6 0.9 10 66-75 3-12 (198)
159 2xv5_A Lamin-A/C; structural p 32.1 56 0.0019 21.6 3.8 22 15-36 4-25 (74)
160 3oja_A Leucine-rich immune mol 31.9 64 0.0022 26.5 5.0 30 17-46 429-458 (487)
161 1x4d_A Matrin 3; structural ge 31.8 15 0.00053 24.8 1.0 12 66-77 14-25 (102)
162 2dhg_A TRNA selenocysteine ass 31.7 20 0.00068 22.8 1.5 11 65-75 7-17 (104)
163 1nu4_A U1A RNA binding domain; 31.7 16 0.00055 22.9 1.0 11 66-76 7-17 (97)
164 1t2k_D Cyclic-AMP-dependent tr 31.7 66 0.0022 19.9 3.9 17 18-34 24-40 (61)
165 2nlw_A Eukaryotic translation 31.4 22 0.00075 23.1 1.7 11 66-76 14-24 (105)
166 1bb1_B Designed, thermostable 31.4 62 0.0021 18.9 3.4 20 18-37 4-23 (36)
167 1go4_E MAD1 (mitotic arrest de 31.4 76 0.0026 22.4 4.6 35 14-48 10-44 (100)
168 1q06_A Transcriptional regulat 31.4 69 0.0024 22.4 4.5 30 18-47 81-110 (135)
169 1r8d_A Transcription activator 31.3 87 0.003 20.8 4.8 30 17-46 76-105 (109)
170 3lqv_A PRE-mRNA branch site pr 31.2 15 0.00053 23.9 0.9 10 66-75 7-16 (115)
171 2wbr_A GW182, gawky, LD47780P; 31.1 15 0.00052 25.2 0.9 9 67-75 7-15 (89)
172 2hgm_A HNRPF protein, heteroge 31.1 19 0.00066 25.2 1.5 12 64-75 39-50 (126)
173 2i2y_A Fusion protein consists 30.9 24 0.00083 24.2 1.9 16 60-75 66-81 (150)
174 1wex_A Hypothetical protein (r 30.9 30 0.001 23.1 2.4 11 65-75 13-23 (104)
175 1fgj_A Hydroxylamine oxidoredu 30.8 48 0.0016 29.0 4.2 28 19-47 472-499 (546)
176 3u1c_A Tropomyosin alpha-1 cha 30.6 91 0.0031 21.3 4.9 20 15-34 43-62 (101)
177 3c3f_A Alpha/beta peptide with 30.5 85 0.0029 18.4 3.9 22 17-38 9-30 (34)
178 1rtm_1 Mannose-binding protein 30.1 55 0.0019 22.2 3.7 22 16-37 4-25 (149)
179 2db1_A Heterogeneous nuclear r 30.0 33 0.0011 22.9 2.4 12 64-75 14-25 (118)
180 4fi5_A Nucleoprotein; structur 29.9 12 0.00041 27.3 0.2 50 15-75 21-74 (113)
181 2wg5_A General control protein 29.9 48 0.0016 23.0 3.4 21 17-37 15-35 (109)
182 4fxv_A ELAV-like protein 1; RN 29.8 19 0.00065 23.5 1.2 18 58-75 10-27 (99)
183 1s1c_X RHO-associated, coiled- 29.5 59 0.002 21.7 3.6 22 15-36 12-33 (71)
184 1y1u_A Signal transducer and a 29.3 63 0.0021 29.0 4.8 29 15-43 18-46 (585)
185 3trt_A Vimentin; cytoskeleton, 29.3 60 0.0021 20.6 3.6 16 17-32 57-72 (77)
186 1a93_B MAX protein, coiled coi 28.8 47 0.0016 19.5 2.6 19 15-33 13-31 (34)
187 4aj5_A SKA1, spindle and kinet 28.4 84 0.0029 22.0 4.3 28 19-46 54-81 (91)
188 2gtl_O Extracellular hemoglobi 28.3 17 0.00058 28.7 0.8 26 15-40 4-29 (215)
189 2lmi_A GRSF-1, G-rich sequence 28.2 29 0.00098 22.6 1.8 12 64-75 8-19 (107)
190 1l8d_A DNA double-strand break 28.0 1.2E+02 0.004 20.2 5.0 23 15-37 70-92 (112)
191 1gu4_A CAAT/enhancer binding p 27.5 63 0.0021 21.6 3.5 28 18-45 38-65 (78)
192 4e61_A Protein BIM1; EB1-like 27.4 1.1E+02 0.0036 21.9 4.8 24 16-39 25-52 (106)
193 1r8e_A Multidrug-efflux transp 27.3 81 0.0028 23.6 4.5 27 18-44 81-107 (278)
194 3tnu_A Keratin, type I cytoske 27.3 64 0.0022 22.8 3.7 31 15-45 37-67 (131)
195 1gmj_A ATPase inhibitor; coile 27.2 1.1E+02 0.0038 21.0 4.8 27 17-43 41-68 (84)
196 1wf1_A RNA-binding protein RAL 27.2 34 0.0011 22.1 2.0 14 65-78 25-38 (110)
197 2j5u_A MREC protein; bacterial 27.1 37 0.0012 26.7 2.6 21 17-37 27-47 (255)
198 3s8s_A Histone-lysine N-methyl 27.1 22 0.00076 23.7 1.2 11 65-75 4-14 (110)
199 2er8_A Regulatory protein Leu3 26.8 28 0.00097 21.4 1.6 18 16-33 49-66 (72)
200 1am9_A Srebp-1A, protein (ster 26.8 87 0.003 20.5 4.1 23 16-38 50-72 (82)
201 1g6u_A Domain swapped dimer; d 26.8 80 0.0027 19.4 3.6 23 15-37 19-41 (48)
202 1why_A Hypothetical protein ri 26.7 44 0.0015 21.0 2.5 12 64-75 14-25 (97)
203 1wg5_A Heterogeneous nuclear r 26.7 39 0.0013 21.8 2.3 12 64-75 12-23 (104)
204 3ns6_A Eukaryotic translation 26.6 19 0.00063 23.3 0.7 11 66-76 5-15 (100)
205 2qfa_C Inner centromere protei 26.6 35 0.0012 21.4 1.9 27 18-44 12-43 (47)
206 2w83_C C-JUN-amino-terminal ki 26.6 18 0.00062 24.8 0.6 13 21-33 63-75 (77)
207 1l8d_A DNA double-strand break 26.3 1.3E+02 0.0043 20.0 4.9 15 17-31 11-25 (112)
208 1wel_A RNA-binding protein 12; 25.8 55 0.0019 21.7 3.0 12 64-75 22-33 (124)
209 1uaw_A Mouse-musashi-1; RNP-ty 25.7 22 0.00075 21.2 0.8 8 68-75 1-8 (77)
210 3mq7_A Bone marrow stromal ant 25.7 63 0.0022 23.8 3.4 11 25-35 73-83 (121)
211 2cq1_A PTB-like protein L; RRM 25.6 41 0.0014 22.3 2.3 11 65-75 13-23 (101)
212 3tq7_B Microtubule-associated 25.4 84 0.0029 21.3 3.8 27 14-40 6-36 (82)
213 2vz4_A Tipal, HTH-type transcr 25.3 79 0.0027 21.1 3.7 29 18-46 76-104 (108)
214 3ulh_A THO complex subunit 4; 25.2 20 0.0007 22.9 0.7 11 65-75 27-37 (107)
215 1f5n_A Interferon-induced guan 25.2 92 0.0031 27.5 5.0 32 15-46 486-517 (592)
216 3twe_A Alpha4H; unknown functi 25.1 82 0.0028 17.3 3.0 12 16-27 8-19 (27)
217 3ryc_E Stathmin-4; alpha-tubul 25.1 1E+02 0.0035 23.1 4.6 30 15-44 42-76 (143)
218 2j5u_A MREC protein; bacterial 24.8 70 0.0024 25.1 3.8 23 17-39 37-59 (255)
219 2wq1_A General control protein 24.7 1.1E+02 0.0038 17.8 3.9 21 18-38 9-29 (33)
220 2wt7_A Proto-oncogene protein 24.7 1E+02 0.0035 19.2 3.9 17 18-34 25-41 (63)
221 1ez3_A Syntaxin-1A; three heli 24.7 1.1E+02 0.0039 20.4 4.5 27 16-42 12-38 (127)
222 3tyt_A Heterogeneous nuclear r 24.6 30 0.001 25.5 1.6 12 65-76 2-13 (205)
223 2zvf_A Alanyl-tRNA synthetase; 24.6 1.1E+02 0.0039 21.6 4.6 23 16-38 32-54 (171)
224 3sde_A Paraspeckle component 1 24.5 23 0.0008 26.5 1.0 16 60-75 15-30 (261)
225 3c3g_A Alpha/beta peptide with 24.3 1.1E+02 0.0038 17.7 3.9 21 18-38 9-29 (33)
226 1sjq_A Polypyrimidine tract-bi 24.2 25 0.00086 24.1 1.0 11 65-75 14-24 (105)
227 2veb_A Protoglobin; hemoprotei 24.1 54 0.0018 25.5 3.0 33 14-46 21-53 (195)
228 3gpv_A Transcriptional regulat 23.8 1.2E+02 0.0041 21.5 4.7 30 17-46 96-125 (148)
229 3gp4_A Transcriptional regulat 23.7 1.2E+02 0.0041 21.4 4.7 27 18-44 83-109 (142)
230 3u06_A Protein claret segregat 23.7 1.1E+02 0.0037 25.8 5.0 18 16-33 10-27 (412)
231 1x4f_A Matrin 3; structural ge 23.7 25 0.00084 24.3 0.9 14 65-78 23-36 (112)
232 2qfj_A FBP-interacting repress 23.7 5.8 0.0002 28.1 -2.5 16 60-75 21-36 (216)
233 1dh3_A Transcription factor CR 23.7 1.3E+02 0.0046 18.4 4.4 27 17-43 23-49 (55)
234 1fxl_A Paraneoplastic encephal 23.6 25 0.00087 23.3 0.9 9 67-75 2-10 (167)
235 2ghp_A U4/U6 snRNA-associated 23.5 23 0.00079 26.5 0.7 16 60-75 34-49 (292)
236 2dq3_A Seryl-tRNA synthetase; 23.4 1.8E+02 0.0062 24.3 6.3 21 16-36 75-95 (425)
237 2cqp_A RNA-binding protein 12; 23.3 43 0.0015 20.9 2.0 11 65-75 13-23 (98)
238 3coq_A Regulatory protein GAL4 23.0 85 0.0029 19.7 3.4 22 14-35 43-64 (89)
239 2r2v_A GCN4 leucine zipper; co 23.0 1.2E+02 0.0042 17.7 3.9 22 17-38 9-30 (34)
240 2kxn_B Transformer-2 protein h 22.9 33 0.0011 23.4 1.4 13 63-75 42-54 (129)
241 2w6a_A ARF GTPase-activating p 22.6 1E+02 0.0035 20.2 3.7 17 14-30 11-27 (63)
242 2la6_A RNA-binding protein FUS 22.5 30 0.001 21.9 1.0 11 65-75 11-21 (99)
243 3p5t_L Cleavage and polyadenyl 22.4 22 0.00074 22.3 0.4 8 68-75 2-9 (90)
244 3kqg_A Langerin, C-type lectin 22.3 1.3E+02 0.0046 20.8 4.6 27 16-42 6-32 (182)
245 4gkw_A Spindle assembly abnorm 22.1 1.4E+02 0.0048 22.6 4.9 28 16-43 18-49 (167)
246 2bz2_A Negative elongation fac 22.0 32 0.0011 23.3 1.2 16 60-75 32-47 (121)
247 1hlo_A Protein (transcription 21.9 73 0.0025 20.6 2.9 21 17-37 58-78 (80)
248 2ad9_A Polypyrimidine tract-bi 21.8 29 0.00098 24.3 0.9 10 66-75 30-39 (119)
249 3r27_A HnRNP L, heterogeneous 21.7 29 0.00099 23.7 0.9 9 67-75 21-29 (100)
250 2bni_A General control protein 21.7 1.3E+02 0.0045 17.6 3.9 21 18-38 10-30 (34)
251 2rjz_A PILO protein; structura 21.5 69 0.0023 23.1 3.0 20 16-35 15-34 (147)
252 1uii_A Geminin; human, DNA rep 21.2 1.7E+02 0.0058 20.1 4.8 27 16-42 46-72 (83)
253 3mq7_A Bone marrow stromal ant 21.1 1.5E+02 0.0051 21.7 4.7 25 16-40 78-102 (121)
254 1nlw_A MAD protein, MAX dimeri 21.0 1.7E+02 0.0059 19.1 4.7 29 17-45 48-76 (80)
255 1x8y_A Lamin A/C; structural p 21.0 1.2E+02 0.0039 20.2 3.8 22 16-37 28-49 (86)
256 1hjb_A Ccaat/enhancer binding 20.9 1.5E+02 0.0051 20.1 4.4 25 17-41 51-75 (87)
257 3zwh_Q Myosin-9; Ca-binding pr 20.9 56 0.0019 20.0 2.0 22 16-37 6-27 (45)
258 1rk8_A CG8781-PA, CG8781-PA pr 20.8 30 0.001 24.3 0.9 13 63-75 68-80 (165)
259 3u1l_A PRE-mRNA-splicing facto 20.7 31 0.0011 27.0 1.0 14 64-77 131-144 (240)
260 3q2s_C Cleavage and polyadenyl 20.7 29 0.00098 26.3 0.8 10 66-75 67-76 (229)
261 1b7f_A Protein (SXL-lethal pro 20.6 33 0.0011 22.9 1.0 10 66-75 2-11 (168)
262 1pyi_A Protein (pyrimidine pat 20.5 1.7E+02 0.0059 18.6 4.6 17 16-32 48-64 (96)
263 1yzm_A FYVE-finger-containing 20.4 1.2E+02 0.0041 19.0 3.6 17 17-33 29-45 (51)
264 2kn4_A Immunoglobulin G-bindin 20.4 49 0.0017 22.6 1.9 14 62-75 65-78 (158)
265 3fx0_A NF-kappa-B essential mo 20.3 1.5E+02 0.0052 20.9 4.4 30 14-43 36-65 (96)
266 4etp_A Kinesin-like protein KA 20.2 1.4E+02 0.0049 24.9 5.0 18 16-33 10-27 (403)
267 2p2u_A HOST-nuclease inhibitor 20.2 82 0.0028 23.4 3.2 19 15-33 22-40 (171)
No 1
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=75.63 E-value=0.74 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEM 28 (132)
Q Consensus 15 d~ELEemK~Rl~EM 28 (132)
+.+|++|+.||+.+
T Consensus 25 Eedi~~MqsRLaAL 38 (40)
T 2xze_Q 25 EEALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35788888888754
No 2
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.61 E-value=0.88 Score=30.64 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=12.4
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
+.++++|+|||||+
T Consensus 6 ~~~~~~~~lfV~~L 19 (103)
T 1s79_A 6 KNDVKNRSVYIKGF 19 (103)
T ss_dssp SSCSGGGCEEEECC
T ss_pred cccCCCCEEEEECC
Confidence 56788999999999
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=71.99 E-value=4.5 Score=34.02 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=9.9
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
....+.||||||
T Consensus 99 ~~~~~~lfV~nL 110 (437)
T 3pgw_S 99 GDAFKTLFVARV 110 (437)
T ss_pred CCCCCEEEEeCC
Confidence 445789999998
No 4
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.94 E-value=1.4 Score=29.24 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCcccccccCCCceEeccc
Q 032827 57 SSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 57 ~t~eek~E~DsRSIYVGNV 75 (132)
......++.+.+.|||||+
T Consensus 15 ~~~~~~~~~~~~~l~V~nl 33 (114)
T 2cq4_A 15 VDNLSPEERDARTVFCMQL 33 (114)
T ss_dssp SCCCCTTHHHHTEEEEESC
T ss_pred cCccCcccCCCCEEEEeCC
Confidence 3455667788999999999
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=70.34 E-value=2.2 Score=28.14 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCcccccccCCCceEeccc
Q 032827 57 SSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 57 ~t~eek~E~DsRSIYVGNV 75 (132)
.+...+...+.+.|||||+
T Consensus 5 ~~~~~~~~~~~~~l~V~nl 23 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDL 23 (115)
T ss_dssp CCSSCCCSTTCEEEEEESC
T ss_pred CCcCCCCCCCCcEEEEeCC
Confidence 3455667788999999999
No 6
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=69.06 E-value=1.8 Score=27.09 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=11.5
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
.+.+.+.++|||||+
T Consensus 5 ~~~~~~~~~l~V~nl 19 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGL 19 (87)
T ss_dssp --CCSCTTEEEEECC
T ss_pred CCCCCCCCEEEEeCC
Confidence 345678999999999
No 7
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=68.96 E-value=6.2 Score=23.00 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLr 36 (132)
||.+||+.|..+..|+++++
T Consensus 3 elaaikqelaaikkelaaik 22 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIK 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655443
No 8
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=68.79 E-value=0.73 Score=28.89 Aligned_cols=12 Identities=67% Similarity=1.160 Sum_probs=10.8
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
|.|.|+|||||+
T Consensus 3 ~~~~~~l~V~nl 14 (89)
T 3ucg_A 3 EADARSIYVGNV 14 (89)
T ss_dssp HHHHTEEEEESC
T ss_pred CCcCCEEEEeCC
Confidence 578899999999
No 9
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=68.62 E-value=5.6 Score=23.18 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLre 37 (132)
.+||.+||+.|..+.=|++++++
T Consensus 8 kqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 8 KQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999887765
No 10
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.35 E-value=3 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.4
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
...++.+.+.|||||+
T Consensus 8 ~~~~~~~~~~l~V~nL 23 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGL 23 (113)
T ss_dssp CCCCCCCCCEEEEECC
T ss_pred CcccCCCCCEEEEcCC
Confidence 4456788999999998
No 11
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.60 E-value=11 Score=24.87 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHhHHHHHhh
Q 032827 15 QVELDDMKIRLKEMEEEATA----LRQMHAKVGNE 45 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~k----LremQ~~veke 45 (132)
+.||..+++|+..+|+++.+ |...|.+++..
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999888764 55566666543
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=66.58 E-value=4.6 Score=26.59 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=13.9
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
......+.+.+.|||||+
T Consensus 16 ~~~~~~~~~~~~l~V~nL 33 (115)
T 2cpz_A 16 AGSQKEGPEGANLFIYHL 33 (115)
T ss_dssp BSCCCCCSTTCCEEEESC
T ss_pred CccCcCCCCCcEEEEeCC
Confidence 444556678899999999
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.52 E-value=3.6 Score=26.56 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=13.9
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
+.+...+.+.+.|||||+
T Consensus 6 ~~~~~~~~~~~~l~V~nl 23 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNI 23 (107)
T ss_dssp CCSSCCSSCCCCEEEESC
T ss_pred CcccccCCCCCEEEEeCC
Confidence 334556778999999999
No 14
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.30 E-value=3.6 Score=26.41 Aligned_cols=14 Identities=14% Similarity=0.269 Sum_probs=11.9
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+.+.|||||+
T Consensus 10 ~~~~~~~~l~V~nL 23 (101)
T 2fc9_A 10 TWSGESKTLVLSNL 23 (101)
T ss_dssp CCSCCCSEEEEESC
T ss_pred cCCCCCCEEEEeCC
Confidence 35678999999999
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.53 E-value=3.9 Score=26.37 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.0
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
+...+...+.+.|||||+
T Consensus 6 ~~~~~~~~~~~~l~v~nl 23 (103)
T 2cqg_A 6 SGVKRAVQKTSDLIVLGL 23 (103)
T ss_dssp SSCSCCCCCCCCEEEESC
T ss_pred CCCCCccCCCCEEEEEcC
Confidence 344566678899999998
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.40 E-value=3.9 Score=26.35 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=13.4
Q ss_pred cccccccCCCceEeccc
Q 032827 59 LANREEVDSRSVFVGNV 75 (132)
Q Consensus 59 ~eek~E~DsRSIYVGNV 75 (132)
.+.....+.++|||||+
T Consensus 7 ~~~~~~~~~~~l~V~nl 23 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNL 23 (103)
T ss_dssp CCCCCCSSCCCEEEECC
T ss_pred CCccCCCCCCEEEEeCC
Confidence 34455678999999999
No 17
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=64.92 E-value=3.9 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=11.7
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
+...-..+.|||||+
T Consensus 9 ~~~~~~~~~l~v~nL 23 (105)
T 2dnh_A 9 ESRGGRDRKLFVGML 23 (105)
T ss_dssp CCSCCCCCEEEEESC
T ss_pred cccCCCCCEEEEeCC
Confidence 344556899999999
No 18
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.74 E-value=4.2 Score=26.82 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=14.6
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
......+.+.+.|||||+
T Consensus 8 ~~~~~~~~~~~~l~V~nl 25 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGL 25 (116)
T ss_dssp CCCCCCSCSSSEEEEECC
T ss_pred CCCCcCCCCCCEEEEeCC
Confidence 445566788999999999
No 19
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.60 E-value=3.9 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=13.9
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
...++.-.+.+.|||||+
T Consensus 6 ~~~~~~~~~~~~l~V~nl 23 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNL 23 (99)
T ss_dssp SCCSCCCCCTTEEEEESC
T ss_pred CCCCCcCCCCCEEEEeCC
Confidence 344556678899999999
No 20
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=67.66 E-value=1.4 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.9
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
+++.++++|||||+
T Consensus 2 ~~~~~~~~l~V~nL 15 (116)
T 2lcw_A 2 QDNSDNNTIFVQGL 15 (116)
Confidence 45678999999999
No 21
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.78 E-value=4.2 Score=26.08 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=13.2
Q ss_pred cccccccCCCceEecccc
Q 032827 59 LANREEVDSRSVFVGNVT 76 (132)
Q Consensus 59 ~eek~E~DsRSIYVGNV~ 76 (132)
..+.....++.|||||++
T Consensus 7 ~~~~~~~~~~~l~V~nLp 24 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLM 24 (99)
T ss_dssp CCCSCSSCCCEEEEESCC
T ss_pred ccccccCCcCEEEEeCCC
Confidence 344555678999999993
No 22
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=63.22 E-value=12 Score=26.20 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHhhh
Q 032827 15 QVELDDMKIRLKEMEE-----EATALRQMHAKVGNEM 46 (132)
Q Consensus 15 d~ELEemK~Rl~EMEe-----EA~kLremQ~~vekem 46 (132)
+--|++|+.+|+.-|+ ||+.|+.|+++-++..
T Consensus 41 ~~SleeIqkKLeAAeERRks~EA~~L~~Laekreh~~ 77 (87)
T 4f6r_C 41 DPSLEEIQKKLEAAEERRKAHFAAMLERLQEKDKHAE 77 (87)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999998764 6678888888776643
No 23
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.88 E-value=4.3 Score=26.12 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=12.1
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
...+.+.+.|||||+
T Consensus 9 ~~~~~~~~~l~V~nl 23 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNL 23 (103)
T ss_dssp CCCSCCCCEEEEESC
T ss_pred CCCCCCCCEEEEeCC
Confidence 345667899999998
No 24
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=62.76 E-value=3.5 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLr 36 (132)
.+++++|++++.|+.++..+.
T Consensus 4 ~~i~avKkKiq~lq~q~d~ae 24 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLE 24 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998876443
No 25
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.46 E-value=12 Score=21.69 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLr 36 (132)
|+.++|+.+..+..|.++|+
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.79 E-value=10 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLr 36 (132)
..|.|++|+.+.++..+.+.|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555555554443
No 27
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=60.31 E-value=1.8 Score=28.98 Aligned_cols=19 Identities=53% Similarity=0.838 Sum_probs=15.8
Q ss_pred CCcccccccCCCceEeccc
Q 032827 57 SSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 57 ~t~eek~E~DsRSIYVGNV 75 (132)
....++.+.+.++|||||+
T Consensus 26 ~~~~~~~~~~~~~l~V~nl 44 (124)
T 2jwn_A 26 LSAEEKKEIDKRSVYVGNV 44 (124)
T ss_dssp CCHHHHHHHHHTEEEEEEE
T ss_pred ccccccccCCCCEEEEeCC
Confidence 4556677889999999999
No 28
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=60.16 E-value=14 Score=26.71 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
..+||.++|++|+..|.-..+|+++-.+-..+.
T Consensus 2 ~~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eF 34 (123)
T 4dzo_A 2 SSKEVAELKKQVESAELKNQRLKEVFQTKIQEF 34 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999876655443
No 29
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=59.68 E-value=3.3 Score=27.67 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=11.3
Q ss_pred CCcccccccCCCceEeccc
Q 032827 57 SSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 57 ~t~eek~E~DsRSIYVGNV 75 (132)
.......+.+.+.|||||+
T Consensus 21 ~~~~~~~~~~~~~l~V~nL 39 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPF 39 (108)
T ss_dssp -------CCSCSEEEECSS
T ss_pred cccccCCCCCCCEEEEECC
Confidence 4455566788999999999
No 30
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.57 E-value=7 Score=24.09 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 032827 21 MKIRLKEMEE 30 (132)
Q Consensus 21 mK~Rl~EMEe 30 (132)
+|.|++++|+
T Consensus 28 lqkKlkeLee 37 (42)
T 2l5g_B 28 LKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.36 E-value=5.7 Score=25.55 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=13.1
Q ss_pred cccccccCCCceEeccc
Q 032827 59 LANREEVDSRSVFVGNV 75 (132)
Q Consensus 59 ~eek~E~DsRSIYVGNV 75 (132)
.......+.+.|||||+
T Consensus 7 ~~~~~~~~~~~l~V~nl 23 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNI 23 (103)
T ss_dssp CCSCCSCCCCEEEEESC
T ss_pred CCCCCCCCCCEEEEeCC
Confidence 33455677899999999
No 32
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.61 E-value=3.9 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=13.7
Q ss_pred CCcccccccCCCceEeccc
Q 032827 57 SSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 57 ~t~eek~E~DsRSIYVGNV 75 (132)
.+.......+.++|||||+
T Consensus 19 ~S~~~~~~~~~~~l~V~nL 37 (109)
T 2err_A 19 SHMNTENKSQPKRLHVSNI 37 (109)
T ss_dssp ---CCSCTTCCCEEEEESC
T ss_pred CCCCccCCCCCCEEEEECC
Confidence 4555666778999999999
No 33
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.68 E-value=6.4 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.9
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
.....+.+.|||||+
T Consensus 9 ~~~~~~~~~l~V~nL 23 (102)
T 2fc8_A 9 NARSQPSKTLFVKGL 23 (102)
T ss_dssp SSSSCCCSSEEEECC
T ss_pred CCCCCCCCEEEEeCC
Confidence 344567899999999
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.62 E-value=5.4 Score=25.65 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.0
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
..++..+.+.|||||+
T Consensus 8 ~~~~~~~~~~l~V~nl 23 (103)
T 2cq0_A 8 PNRRADDNATIRVTNL 23 (103)
T ss_dssp SCCCCSSSEEEEEESC
T ss_pred CCCCCCCCCEEEEeCC
Confidence 3456678999999999
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.96 E-value=7.1 Score=24.91 Aligned_cols=17 Identities=6% Similarity=0.388 Sum_probs=13.6
Q ss_pred cccccccCCCceEeccc
Q 032827 59 LANREEVDSRSVFVGNV 75 (132)
Q Consensus 59 ~eek~E~DsRSIYVGNV 75 (132)
.......+.+.|||||+
T Consensus 9 ~~~~~~~~~~~l~v~nl 25 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGL 25 (100)
T ss_dssp CCCSSCCCCSCEEEESC
T ss_pred cCcccCCCCCEEEEeCC
Confidence 34456688999999999
No 36
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.89 E-value=14 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLre 37 (132)
.+|+.++|+.+..+.=|.++|++
T Consensus 8 kqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999888875
No 37
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=56.88 E-value=7.6 Score=26.41 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=13.8
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
......+.+++.|||||+
T Consensus 14 ~~~~~~~~~~~~lfV~nL 31 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNL 31 (131)
T ss_dssp CCCCCCSCCCCEEEECSC
T ss_pred CCCCCCCCCCCEEEEeCC
Confidence 334455678899999999
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=56.65 E-value=7.6 Score=25.53 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=13.7
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
......+.+.+.|||||+
T Consensus 31 ~~~~~~~~~~~~l~V~nl 48 (118)
T 2khc_A 31 AGKQIEGPEGCNLFIYHL 48 (118)
T ss_dssp CSSSCCCCCSEEEEEECS
T ss_pred CCCCCCCCCCCEEEEeCC
Confidence 334456678899999999
No 39
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=56.52 E-value=5.7 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.2
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
......+.+.|.|||||+
T Consensus 33 ~~~~~~~~~~~~l~V~nL 50 (139)
T 1u6f_A 33 TQMNPEPDVLRNLMVNYI 50 (139)
T ss_dssp SCSSCCTTTTSEEEEESC
T ss_pred cccCCCCCCCCEEEEeCC
Confidence 445566778899999998
No 40
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.40 E-value=6.6 Score=26.08 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=11.7
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+.+.|||||+
T Consensus 10 ~~~~~~~~l~V~nL 23 (114)
T 2cpy_A 10 DVNSAKVCAHITNI 23 (114)
T ss_dssp SCCSCCCEEEEESC
T ss_pred CCCCCccEEEEeCc
Confidence 45667899999999
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=55.44 E-value=4.9 Score=25.89 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.3
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
...+.+.+.|||||+
T Consensus 7 ~~~~~~~~~l~V~nl 21 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQI 21 (106)
T ss_dssp SCCCTTCEEEEEESC
T ss_pred CCCCCCCCEEEEeCC
Confidence 345678899999999
No 42
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.06 E-value=6.3 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=10.4
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
+.+.+.|||||+
T Consensus 9 ~~~~~~l~V~~l 20 (85)
T 2ytc_A 9 DKTITTLYVGGL 20 (85)
T ss_dssp CSSCCCEEEECC
T ss_pred CCCccEEEEcCC
Confidence 466899999999
No 43
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=54.52 E-value=3.3 Score=25.65 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.5
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
-++|+|||||+
T Consensus 4 ~~~~~l~V~nL 14 (87)
T 2hzc_A 4 GSARRLYVGNI 14 (87)
T ss_dssp GGGGEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 35799999999
No 44
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.49 E-value=7.9 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=13.5
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
....+...+.+.|||||.
T Consensus 6 ~~~~~~~~~~~~l~V~n~ 23 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE 23 (97)
T ss_dssp SSCCCCCCCCSEEEEECS
T ss_pred CCccCCCCCCCEEEEcCC
Confidence 334556678899999996
No 45
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=54.08 E-value=4.5 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=12.3
Q ss_pred ccCCCceEeccccccccC
Q 032827 64 EVDSRSVFVGNVTVKRTN 81 (132)
Q Consensus 64 E~DsRSIYVGNV~~kRtn 81 (132)
..+.+.|||||++.|-++
T Consensus 7 ~~~~~~l~V~nlp~~~~t 24 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS 24 (96)
T ss_dssp --CCEEEEEESSTTSCCC
T ss_pred CCCCCEEEEeCCCcccCC
Confidence 456889999999775333
No 46
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=54.04 E-value=8.8 Score=21.13 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAK 41 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~ 41 (132)
|.||++|++ ++|.+||.+
T Consensus 4 d~ELeair~---------~rl~~lq~~ 21 (27)
T 1yyb_A 4 DEELEALRR---------QRLAELQAK 21 (27)
T ss_dssp HHHHHHHHH---------HHHHHHHHT
T ss_pred hHHHHHHHH---------HHHHHHHhc
Confidence 457777664 456666654
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.89 E-value=7.8 Score=24.88 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.4
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
......+.|||||+
T Consensus 10 ~~~~~~~~l~V~nl 23 (105)
T 1x5u_A 10 SERNQDATVYVGGL 23 (105)
T ss_dssp CCCCTTTEEEEECC
T ss_pred ccCCCCCEEEEeCC
Confidence 44567899999999
No 48
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.71 E-value=11 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.0
Q ss_pred cccccccCCCceEeccc
Q 032827 59 LANREEVDSRSVFVGNV 75 (132)
Q Consensus 59 ~eek~E~DsRSIYVGNV 75 (132)
.......+.+.|||||+
T Consensus 14 ~~~~~~~~~~~l~V~nL 30 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNL 30 (109)
T ss_dssp SSCCCCCCSSEEEEESC
T ss_pred CCCCCCCCCCEEEEeCC
Confidence 33455667899999998
No 49
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.10 E-value=16 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLre 37 (132)
..|+++..+|.+||+..+.|+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999988666544
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.05 E-value=8.4 Score=24.89 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=11.4
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+.+.|||||+
T Consensus 10 ~~~~~~~~l~V~nL 23 (111)
T 1x4h_A 10 SDVTEGKTVFIRNL 23 (111)
T ss_dssp CCCCCCCCEEEESC
T ss_pred CcCCCCCEEEEECC
Confidence 34567899999999
No 51
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.87 E-value=7 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=14.3
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
....+.+.+.+.|||||+
T Consensus 16 ~~~~~~~~~~~~l~V~nl 33 (114)
T 1x5o_A 16 QMAKQQEQDPTNLYISNL 33 (114)
T ss_dssp CCCSCCCCCTTEEEEESC
T ss_pred chhcccCCCCCEEEEeCC
Confidence 334566788999999999
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.82 E-value=33 Score=21.34 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHH
Q 032827 12 ENKQVELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 12 ~~~d~ELEemK~Rl~EMEeEA~kLr 36 (132)
|.=-.|++++|+|+.++.++.+.|+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345799999999999999866554
No 53
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=52.65 E-value=3.9 Score=27.85 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=9.4
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
|+|.|||||+
T Consensus 2 ~~~~l~V~nL 11 (175)
T 3nmr_A 2 DAIKMFVGQV 11 (175)
T ss_dssp CCEEEEEESC
T ss_pred CceEEEEeCC
Confidence 7899999998
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=51.87 E-value=5.2 Score=25.77 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.4
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....++++|||||+
T Consensus 18 ~~~~~~~~l~V~nl 31 (106)
T 1p27_B 18 QRSVEGWILFVTGV 31 (106)
T ss_dssp CCBTTBEEEEEECC
T ss_pred CCCCCCCEEEEeCC
Confidence 34567899999999
No 55
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=51.35 E-value=22 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=17.1
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHH
Q 032827 15 QVELDDMKIR-LKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~R-l~EMEeEA~kLre 37 (132)
..||+.+|+. |.||-.|.+|+++
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888887 4678888777665
No 56
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.96 E-value=6.6 Score=24.66 Aligned_cols=12 Identities=42% Similarity=0.734 Sum_probs=10.4
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 6 ~~~~~~l~V~nl 17 (90)
T 2dnp_A 6 SGNTWKIFVGNV 17 (90)
T ss_dssp SCCSCCEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 457899999999
No 57
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.92 E-value=25 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHA 40 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~ 40 (132)
-.|++..+.+++|.|-++|++|-.
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc
Confidence 457788888999999999988753
No 58
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=49.74 E-value=12 Score=26.52 Aligned_cols=24 Identities=0% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMH 39 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ 39 (132)
+.+..++.+|++|+.++..|+.+.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555777777777766655543
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=49.35 E-value=6.5 Score=24.10 Aligned_cols=12 Identities=25% Similarity=0.637 Sum_probs=10.2
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
+.+.++|||||+
T Consensus 4 ~~~~~~l~V~nl 15 (85)
T 3mdf_A 4 ATTKRVLYVGGL 15 (85)
T ss_dssp CCCSSEEEEECC
T ss_pred CCCCCEEEEECC
Confidence 356899999999
No 60
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=49.19 E-value=5.5 Score=24.64 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=8.3
Q ss_pred CCceEecccc
Q 032827 67 SRSVFVGNVT 76 (132)
Q Consensus 67 sRSIYVGNV~ 76 (132)
+++|||||++
T Consensus 1 ~~~l~V~nLp 10 (81)
T 2krb_A 1 DSVIVVDNVP 10 (81)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEeCCC
Confidence 4789999994
No 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=48.70 E-value=8.3 Score=26.72 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.1
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
.....+.++|||||+
T Consensus 41 ~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 41 PPDVEGMTSLKVDNL 55 (135)
T ss_dssp CSSGGGCCCEEEECC
T ss_pred CCCCCCCCEEEEeCC
Confidence 345567899999999
No 62
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.55 E-value=13 Score=23.25 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.2
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+.+.|||||+
T Consensus 11 ~~~~~~~~l~V~nl 24 (94)
T 2e5h_A 11 GLAPSKSTVYVSNL 24 (94)
T ss_dssp SCCCCTTSEEEESC
T ss_pred CCCCCCCEEEEECC
Confidence 34457899999999
No 63
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.30 E-value=6.9 Score=24.46 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 3 ~~~~~l~V~nL 13 (88)
T 1wf0_A 3 SGSSGVFVGRC 13 (88)
T ss_dssp SCCCEEEEESC
T ss_pred CCCcEEEEeCC
Confidence 34799999999
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.78 E-value=9.7 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.2
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
.....+.+.|||||+
T Consensus 10 ~~~~~~~~~l~V~nl 24 (105)
T 2dh8_A 10 NSGADEIGKLFVGGL 24 (105)
T ss_dssp CCCSSSSSEECCBSC
T ss_pred cCCCCCCCEEEEeCC
Confidence 345677899999999
No 65
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=46.75 E-value=13 Score=24.76 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=12.5
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
......+.+.|||||+
T Consensus 56 ~~~~~~~~~~l~v~nl 71 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGL 71 (140)
T ss_dssp SCSSCSSCCEEEEECC
T ss_pred CCCCCCCCcEEEEEeC
Confidence 3445567899999999
No 66
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=46.41 E-value=6.3 Score=24.92 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=12.0
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
...+.+.+.|||||+
T Consensus 10 ~~~~~~~~~l~V~nL 24 (96)
T 1fjc_A 10 SKKVRAARTLLAKNL 24 (96)
T ss_dssp TSTTTGGGEEEEESC
T ss_pred cccCCCCCEEEEeCC
Confidence 345567899999999
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.37 E-value=34 Score=23.55 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEA 32 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA 32 (132)
+||-.++-||.|||.|-
T Consensus 26 qEi~~Lr~kv~elEnEr 42 (81)
T 3qh9_A 26 QELRHLKIKVEELENER 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999999874
No 68
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.20 E-value=6.9 Score=25.99 Aligned_cols=11 Identities=55% Similarity=0.869 Sum_probs=9.7
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+++.|||||+
T Consensus 6 ~~~~~lfVgnL 16 (114)
T 2dnl_A 6 SGSRKVFVGGL 16 (114)
T ss_dssp SCCCCEEEECC
T ss_pred CCCCEEEEcCC
Confidence 46899999999
No 69
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.61 E-value=8.3 Score=24.47 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=9.1
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...++|||||+
T Consensus 6 ~~~~~l~V~nl 16 (94)
T 2e5g_A 6 SGLRSVFVSGF 16 (94)
T ss_dssp TTCCEEEEECC
T ss_pred CCCCEEEEECC
Confidence 34689999999
No 70
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.46 E-value=40 Score=20.26 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHAK 41 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~~ 41 (132)
.-|++.|.++..++.....|++-..+
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888774443
No 71
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.28 E-value=11 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.++|||||+
T Consensus 14 ~~~~~~l~V~nL 25 (101)
T 1fj7_A 14 STTPFNLFIGNL 25 (101)
T ss_dssp CSCSEEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 446889999998
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.25 E-value=7.2 Score=24.77 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.4
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+++.|||||+
T Consensus 5 ~~~~~~l~V~nl 16 (99)
T 1whw_A 5 SSGSGRLFVRNL 16 (99)
T ss_dssp CCSCEEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 457899999999
No 73
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=45.23 E-value=37 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
++.||+.+|..|.=-|.-+.||+=+|++++
T Consensus 22 T~~ELeSlK~EL~HfE~rl~K~rH~~~el~ 51 (109)
T 2fcw_A 22 TDKELEAFREELKHFEAKIEKHNHYQKQLE 51 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988888776
No 74
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=45.21 E-value=8.5 Score=24.59 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+++.|||||+
T Consensus 25 ~~~~~l~V~nl 35 (101)
T 2la4_A 25 PRVTTAYIGNI 35 (101)
T ss_dssp SSCCEEEEESC
T ss_pred CCCCEEEEcCC
Confidence 45789999999
No 75
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=45.17 E-value=7.6 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.6
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+++.|||||+
T Consensus 21 ~~~~~~~~l~V~nl 34 (110)
T 1oo0_B 21 QRSVEGWILFVTSI 34 (110)
T ss_dssp CCBTTBEEEEEESC
T ss_pred CCCCCCCEEEEeCC
Confidence 34577899999999
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=45.05 E-value=6.2 Score=24.82 Aligned_cols=14 Identities=50% Similarity=0.838 Sum_probs=10.8
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
..+.+.+.|||||+
T Consensus 11 ~~~~~~~~l~v~nl 24 (95)
T 2ywk_A 11 AQEEADRTVFVGNL 24 (95)
T ss_dssp -CTTGGGEEEEECC
T ss_pred CCCCCCCEEEEECC
Confidence 34557899999999
No 77
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=44.96 E-value=10 Score=25.12 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=13.9
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
....+...+.++|||||+
T Consensus 17 ~~~~~~~~~~~~l~V~nL 34 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSL 34 (108)
T ss_dssp CSSCCSCSSCEEEEEECC
T ss_pred cccccCCCCCCEEEEeCC
Confidence 334556678899999999
No 78
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.75 E-value=48 Score=19.70 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHAK 41 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~~ 41 (132)
...|++-.+.+++|.|-++|++|-..
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35677778888999999999887543
No 79
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=44.72 E-value=35 Score=24.01 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 032827 20 DMKIRLKEMEEEATALRQMHA 40 (132)
Q Consensus 20 emK~Rl~EMEeEA~kLremQ~ 40 (132)
+|+..+++|+.|.++|..+|+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444443
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.41 E-value=7.7 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=9.5
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+++.|||||+
T Consensus 3 ~~~~~l~V~nL 13 (98)
T 2cpf_A 3 SGSSGLFIKNL 13 (98)
T ss_dssp CCCCCEEEESC
T ss_pred CCCCEEEEeCC
Confidence 46799999998
No 81
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.32 E-value=17 Score=22.81 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...+.|||||+
T Consensus 13 ~~~~~l~V~nl 23 (96)
T 2e44_A 13 QRIRKLQIRNI 23 (96)
T ss_dssp CSCCCEEEEEE
T ss_pred CCCCEEEEEcC
Confidence 45789999999
No 82
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.30 E-value=41 Score=21.87 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEMA 47 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~vekem~ 47 (132)
=|..++.++++|++|...|+.-...+.....
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899888888887776666554
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.28 E-value=12 Score=24.09 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
....+.|||||+
T Consensus 12 ~~~~~~l~V~nL 23 (103)
T 2dng_A 12 TEPPYTAYVGNL 23 (103)
T ss_dssp SSSCEEEEEESC
T ss_pred CCCCeEEEEeCC
Confidence 456899999999
No 84
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.03 E-value=9.3 Score=24.00 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=9.5
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+.++|||||+
T Consensus 6 ~~~~~l~V~nL 16 (93)
T 2cqh_A 6 SGMNKLYIGNL 16 (93)
T ss_dssp CCCCCEEEECC
T ss_pred CCCcEEEEeCC
Confidence 45799999999
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.86 E-value=11 Score=23.47 Aligned_cols=13 Identities=8% Similarity=-0.187 Sum_probs=10.5
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
....++.|||||+
T Consensus 11 ~~~~~~~l~v~nl 23 (95)
T 2cqc_A 11 NPDPNCCLGVFGL 23 (95)
T ss_dssp SCCGGGCEEEESC
T ss_pred CCCCCCEEEEECC
Confidence 3456799999999
No 86
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.40 E-value=8.8 Score=24.15 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.4
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 7 ~~~~~~l~V~nL 18 (92)
T 2dgt_A 7 GKASTKLHVGNI 18 (92)
T ss_dssp CCSSEEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 457899999999
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.36 E-value=8.2 Score=25.38 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.7
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
........+.+.|||||+
T Consensus 18 ~~~~~~~~~~~~l~V~nL 35 (116)
T 1x4b_A 18 ERKKREKEQFRKLFIGGL 35 (116)
T ss_dssp CCCCCHHHHHTEEEEECC
T ss_pred hhcccccCCCCEEEEeCC
Confidence 344555677899999999
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=43.35 E-value=7.2 Score=25.82 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=7.8
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
....+...+.+.|||||+
T Consensus 16 ~~~~~~~~~~~~lfV~nL 33 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGL 33 (109)
T ss_dssp ----------CCEEEESC
T ss_pred ccccccCCCCCEEEEeCC
Confidence 444456678899999999
No 89
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=43.24 E-value=6.2 Score=26.90 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=9.0
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
++|+|||||+
T Consensus 3 ~~~~l~V~nL 12 (172)
T 2g4b_A 3 SARRLYVGNI 12 (172)
T ss_dssp GGGEEEEESC
T ss_pred cccEEEEcCC
Confidence 5799999999
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=43.21 E-value=8.6 Score=23.61 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...++|||||+
T Consensus 2 ~~~~~l~V~nl 12 (88)
T 4a8x_A 2 MKPTKVHIGRL 12 (88)
T ss_dssp CCCCEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 45789999999
No 91
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=43.20 E-value=24 Score=24.21 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=16.3
Q ss_pred cCChHHHHH-HHHHHHHHHHHHH
Q 032827 12 ENKQVELDD-MKIRLKEMEEEAT 33 (132)
Q Consensus 12 ~~~d~ELEe-mK~Rl~EMEeEA~ 33 (132)
+++|.||-+ |.+-|++||++-.
T Consensus 52 edeD~DLKAAIaASLrd~E~qK~ 74 (81)
T 1q0v_A 52 EEEDPDLKAAIQESLREAEEAKL 74 (81)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 555677765 8899999988743
No 92
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=43.04 E-value=8.8 Score=25.75 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=9.9
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.++|||||+
T Consensus 4 ~~~~~~l~V~nL 15 (116)
T 2fy1_A 4 ADHPGKLFIGGL 15 (116)
T ss_dssp TCSCCEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 346799999998
No 93
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.98 E-value=9.1 Score=24.35 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=10.3
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 7 ~~~~~~l~V~nl 18 (99)
T 2dgs_A 7 GSKSNKIFVGGI 18 (99)
T ss_dssp CSSCCEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 457899999998
No 94
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=42.79 E-value=5.4 Score=28.42 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHhhhcCCCCCCCCCCCcccccccCCCceEeccc
Q 032827 17 ELDDMKIRLKEMEEEAT----ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~----kLremQ~~vekem~~~~~p~~~~~t~eek~E~DsRSIYVGNV 75 (132)
+|++++..+..+|..+- ||++....++.+ ++.-+|..+++|+.-|-.+
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D-----------PDevNk~~~~~R~~~V~~l 57 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELD-----------PDDVNKSTLQSRRAAVSAL 57 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcHHHHHHHHHHHHHHHHH
Confidence 57777777777776643 566655555543 4556777777777655554
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=42.73 E-value=9 Score=25.47 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.6
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
....+++.|||||+
T Consensus 17 ~~~~~~~~l~V~nl 30 (126)
T 3ex7_B 17 QRSVEGWILFVTGV 30 (126)
T ss_dssp CCCSSSEEEEEESC
T ss_pred CCCCCCCEEEEeCC
Confidence 44567899999999
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.63 E-value=4.3 Score=26.03 Aligned_cols=12 Identities=58% Similarity=0.924 Sum_probs=10.3
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
+.+.|.|||||+
T Consensus 5 ~~~~~~l~V~nl 16 (104)
T 1p1t_A 5 DRSLRSVFVGNI 16 (104)
T ss_dssp HHHHSCEEEESC
T ss_pred CCCccEEEEeCC
Confidence 456799999999
No 97
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=42.44 E-value=2.9 Score=31.00 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=12.8
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
.+++.++|+|||||+
T Consensus 103 ~~~~~~~~~l~V~nL 117 (193)
T 2voo_A 103 YKNDVKNRSVYIKGF 117 (193)
T ss_dssp HHHHHHHTEEEEECC
T ss_pred hhhccccCEEEecCC
Confidence 356788999999998
No 98
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.39 E-value=20 Score=22.74 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=9.7
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
.-.++.|||||+
T Consensus 16 ~~~~~~l~V~nL 27 (97)
T 2e5j_A 16 APLAADVYVGNL 27 (97)
T ss_dssp SCCCCEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 345789999999
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.18 E-value=16 Score=24.07 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=14.5
Q ss_pred CcccccccCCCceEeccccc
Q 032827 58 SLANREEVDSRSVFVGNVTV 77 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV~~ 77 (132)
+..+...+..+.|||||++.
T Consensus 6 ~~~~~r~~~~~~l~V~nLp~ 25 (111)
T 2cpi_A 6 SGASVRVVQKNLVFVVGLSQ 25 (111)
T ss_dssp SCSCCCCCCSSCEEEEEECT
T ss_pred CCccccccCCCEEEEECCCC
Confidence 33445567789999999943
No 100
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.91 E-value=10 Score=24.28 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=10.3
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 10 ~~~~~~l~V~nL 21 (103)
T 2dnm_A 10 VDGMITLKVDNL 21 (103)
T ss_dssp CSCCCEEEEESC
T ss_pred CCCCeEEEEeCC
Confidence 456899999999
No 101
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.59 E-value=13 Score=26.93 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhHHHHHhhhcCCCCCCCCCCCcccccccCCCceEec
Q 032827 16 VELDDMKIRLKEMEEEAT----ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVG 73 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~----kLremQ~~vekem~~~~~p~~~~~t~eek~E~DsRSIYVG 73 (132)
.+|++++..+...|..+- ||++...+++++ ++.-+|..+++|+--|-
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~D-----------PDevNK~tl~~R~~~Vs 85 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVD-----------PDDVNKSTLQNRRAAVS 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcHHHHHHHHHHHHHHH
Confidence 588888888888887653 677766666653 35566777777765443
No 102
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=41.56 E-value=30 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
++.+++++.++.++|++...|.++|+...
T Consensus 8 ~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~ 36 (575)
T 1bf5_A 8 DSKVRNVKDKVMCIEHEIKSLEDLQDEYD 36 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998544
No 103
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=41.18 E-value=29 Score=24.26 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLre 37 (132)
+||+.|+..|-+||....++|+
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq 71 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKD 71 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999988877766
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.01 E-value=37 Score=21.50 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 032827 19 DDMKIRLKEMEEE 31 (132)
Q Consensus 19 EemK~Rl~EMEeE 31 (132)
+++..++++++.+
T Consensus 26 ~~le~~~~~L~~~ 38 (63)
T 1ci6_A 26 EALTGECKELEKK 38 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 105
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=40.77 E-value=7.4 Score=23.94 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=8.4
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
+.++|||||+
T Consensus 5 ~~~~l~v~nl 14 (87)
T 3bs9_A 5 SHFHVFVGDL 14 (87)
T ss_dssp -CEEEEEESC
T ss_pred CceEEEEeCC
Confidence 5789999999
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.53 E-value=12 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=9.6
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 7 ~~~~~l~V~nL 17 (99)
T 2div_A 7 GMAASLWMGDL 17 (99)
T ss_dssp SSSSEEEECSC
T ss_pred CCccEEEEeCC
Confidence 45899999999
No 107
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=40.40 E-value=46 Score=21.49 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
++.++.++++++++.+.|..+...+..-.
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999998888887777644
No 108
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=40.26 E-value=9.6 Score=26.88 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.5
Q ss_pred cCCCceEeccccc
Q 032827 65 VDSRSVFVGNVTV 77 (132)
Q Consensus 65 ~DsRSIYVGNV~~ 77 (132)
+|++.|||||++.
T Consensus 1 m~~~~l~v~nlp~ 13 (198)
T 1qm9_A 1 MGNSVLLVSNLNP 13 (198)
T ss_dssp CCCCEEEEECCCS
T ss_pred CCCcEEEEeCCCc
Confidence 4789999999844
No 109
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.24 E-value=14 Score=23.48 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=10.2
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 9 ~~~~~~l~v~nL 20 (102)
T 1x5s_A 9 ASDEGKLFVGGL 20 (102)
T ss_dssp CCCCSEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 446899999999
No 110
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=40.23 E-value=11 Score=25.83 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=9.1
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 43 ~~~~~l~V~nL 53 (143)
T 3egn_A 43 EPNCRIYVKNL 53 (143)
T ss_dssp SCCSEEEEEEE
T ss_pred CCCCEEEEeCC
Confidence 34688999999
No 111
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.19 E-value=6 Score=25.38 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.8
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
.+.+++.|||||+
T Consensus 5 ~~~~~~~l~V~nL 17 (102)
T 2xs2_A 5 GKIMPNTVFVGGI 17 (102)
T ss_dssp CEEEEEEEEEECC
T ss_pred CCCCCCEEEEeCC
Confidence 3567899999998
No 112
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=40.12 E-value=18 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHA 40 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~ 40 (132)
....+++++.+|..|+.++..|++++.
T Consensus 20 ~~~~~~~L~~~~~~l~~~l~~l~~~~~ 46 (182)
T 1htn_A 20 NTKMFEELKSRLDTLSQEVALLKEQQA 46 (182)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346788899999999999998888743
No 113
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=40.04 E-value=39 Score=27.44 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 032827 15 QVELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLrem 38 (132)
.+|++.++++.+++++|.+.|..+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887777554
No 114
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.83 E-value=15 Score=23.58 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.8
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
....+.|||||+
T Consensus 12 ~~~~~~l~V~nl 23 (104)
T 1wi8_A 12 KSPPYTAFLGNL 23 (104)
T ss_dssp SSSCEEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 345699999999
No 115
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.73 E-value=58 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHh
Q 032827 17 ELDDMKIRLKEMEEEAT----ALRQMHAKVGN 44 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~----kLremQ~~vek 44 (132)
||-+-..+++++|.+.. .++++|+++.+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444544443 25566666655
No 116
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=39.52 E-value=11 Score=26.12 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=11.6
Q ss_pred cccccCCCceEeccc
Q 032827 61 NREEVDSRSVFVGNV 75 (132)
Q Consensus 61 ek~E~DsRSIYVGNV 75 (132)
++...+.++|||||+
T Consensus 33 ~~~~~~~~~l~V~nl 47 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNL 47 (156)
T ss_dssp CTTTTTCCEEEEESC
T ss_pred cccCCCCCEEEEeCC
Confidence 344457899999998
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.33 E-value=9.1 Score=24.70 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 5 s~~~~~l~V~nL 16 (109)
T 2dis_A 5 SSGNCRLFIGGI 16 (109)
T ss_dssp CCCSEEEEEECC
T ss_pred ccCCCEEEEeCC
Confidence 356899999998
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.22 E-value=8.5 Score=24.12 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=9.7
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+.+.|||||+
T Consensus 6 ~~~~~l~V~nl 16 (90)
T 2dnq_A 6 SGMVKLFIGNL 16 (90)
T ss_dssp SCCEEEEEESC
T ss_pred CCCeEEEEeCC
Confidence 46899999999
No 119
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=38.88 E-value=9.9 Score=24.11 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=8.1
Q ss_pred CCceEeccc
Q 032827 67 SRSVFVGNV 75 (132)
Q Consensus 67 sRSIYVGNV 75 (132)
+|+|||||+
T Consensus 2 ~~~l~V~nL 10 (96)
T 2x1f_A 2 SRVVYLGSI 10 (96)
T ss_dssp CSEEEEESC
T ss_pred CcEEEEECC
Confidence 589999999
No 120
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.88 E-value=19 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=9.9
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
.-..+.|||||+
T Consensus 12 ~~~~~~l~V~nl 23 (114)
T 2do0_A 12 GRLGSTVFVANL 23 (114)
T ss_dssp CCCCSCEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 345899999999
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.87 E-value=10 Score=23.28 Aligned_cols=10 Identities=10% Similarity=0.458 Sum_probs=9.0
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
..+.|||||+
T Consensus 4 ~~~~l~v~nl 13 (85)
T 1x4e_A 4 GSSGLYIRGL 13 (85)
T ss_dssp CCCEEEEESC
T ss_pred CCcEEEEeCC
Confidence 5789999999
No 122
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=38.77 E-value=10 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=13.0
Q ss_pred cccccCCCceEecccccccc
Q 032827 61 NREEVDSRSVFVGNVTVKRT 80 (132)
Q Consensus 61 ek~E~DsRSIYVGNV~~kRt 80 (132)
....-+++.|||||++.|-+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~ 35 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNV 35 (97)
T ss_dssp ---CCTTCEEEEESCCSSCC
T ss_pred cCCCCCCCEEEEeCCCcccC
Confidence 33445789999999976433
No 123
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.65 E-value=11 Score=23.73 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=9.5
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 3 ~~~~~l~V~nL 13 (96)
T 1x5t_A 3 SGSSGIFIGNL 13 (96)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 35799999999
No 124
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.38 E-value=11 Score=24.54 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.8
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
.....++|||||+
T Consensus 21 ~~~~~~~l~V~nl 33 (109)
T 1x4g_A 21 SSPKNCTVYCGGI 33 (109)
T ss_dssp SCSSCCEEEEECC
T ss_pred CCCCCcEEEEeCC
Confidence 4566899999998
No 125
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.00 E-value=16 Score=23.14 Aligned_cols=12 Identities=25% Similarity=0.637 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 9 ~~~~~~l~V~nL 20 (102)
T 2cqb_A 9 ATTKRVLYVGGL 20 (102)
T ss_dssp CCCCSCEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 346899999999
No 126
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=37.93 E-value=12 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATAL 35 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kL 35 (132)
.+++.|+.||.+||+.+..|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777664433
No 127
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.02 E-value=12 Score=23.49 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=9.0
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
+++.|||||+
T Consensus 4 ~~~~l~v~nl 13 (95)
T 2dnz_A 4 GSSGLYVGSL 13 (95)
T ss_dssp CCCEEEEESC
T ss_pred CCcEEEEeCC
Confidence 5789999999
No 128
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=36.85 E-value=66 Score=21.63 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=26.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHH----HHHhHHHHHhh
Q 032827 12 ENKQVELDDMKIRLKEMEEEATA----LRQMHAKVGNE 45 (132)
Q Consensus 12 ~~~d~ELEemK~Rl~EMEeEA~k----LremQ~~veke 45 (132)
.+-++||+.-|..++.+|+|.++ +==||..++++
T Consensus 29 gdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAke 66 (72)
T 1k1f_A 29 GDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKE 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44578999999999999999875 33377777765
No 129
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=36.77 E-value=12 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=9.5
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+.+.|||||+
T Consensus 6 ~~~~~l~V~nl 16 (92)
T 2dgv_A 6 SGACQIFVRNL 16 (92)
T ss_dssp SSCCEEEECSC
T ss_pred CCCcEEEEeCC
Confidence 45799999999
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=36.74 E-value=10 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=8.2
Q ss_pred cccCCCceEecccc
Q 032827 63 EEVDSRSVFVGNVT 76 (132)
Q Consensus 63 ~E~DsRSIYVGNV~ 76 (132)
.....|+|||||++
T Consensus 15 ~~~~~~~l~V~nLp 28 (100)
T 2j76_E 15 PKSPPYTAFLGNLP 28 (100)
T ss_dssp -----CEEEESCCS
T ss_pred CCCCCcEEEEeCCC
Confidence 35668999999993
No 131
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=36.67 E-value=14 Score=23.06 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=9.1
Q ss_pred CCCceEecccc
Q 032827 66 DSRSVFVGNVT 76 (132)
Q Consensus 66 DsRSIYVGNV~ 76 (132)
.++.|||||++
T Consensus 4 ~~~~l~V~nLp 14 (88)
T 1wg1_A 4 GSSGILVKNLP 14 (88)
T ss_dssp CCCCEEEESCC
T ss_pred CCCEEEEeCCC
Confidence 46889999993
No 132
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=36.49 E-value=24 Score=26.32 Aligned_cols=11 Identities=9% Similarity=0.431 Sum_probs=9.2
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.++|.|||||+
T Consensus 20 ~~~~~l~V~nL 30 (284)
T 3smz_A 20 RNRRKILIRGL 30 (284)
T ss_dssp HCCCEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 34789999999
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=36.46 E-value=10 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.9
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
..-++|.|||||+
T Consensus 9 ~~~~~~~l~V~nL 21 (196)
T 1l3k_A 9 EPEQLRKLFIGGL 21 (196)
T ss_dssp CCGGGGEEEEESC
T ss_pred CCCCCCEEEEeCC
Confidence 3457899999999
No 134
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=36.40 E-value=9.2 Score=25.86 Aligned_cols=10 Identities=30% Similarity=0.777 Sum_probs=9.0
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
++|.|||||+
T Consensus 2 ~~~~l~v~nL 11 (167)
T 2cjk_A 2 ESCKMFIGGL 11 (167)
T ss_dssp GGGEEEECSC
T ss_pred CCcEEEEeCC
Confidence 5789999998
No 135
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.27 E-value=44 Score=22.87 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032827 19 DDMKIRLKEMEEEATALR 36 (132)
Q Consensus 19 EemK~Rl~EMEeEA~kLr 36 (132)
++++.++.++|+|-..|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQ 56 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444443
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.09 E-value=19 Score=23.36 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=10.0
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
...++.|||||+
T Consensus 22 ~~~~~~l~V~nL 33 (115)
T 2cpx_A 22 GEPNKVLYLKNL 33 (115)
T ss_dssp CSCCSEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 446799999998
No 137
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=35.74 E-value=40 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLre 37 (132)
..|.+++-.+|+++++|..++++
T Consensus 10 ~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 10 ANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999887763
No 138
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=35.59 E-value=64 Score=21.17 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032827 18 LDDMKIRLKEMEEEA 32 (132)
Q Consensus 18 LEemK~Rl~EMEeEA 32 (132)
++++|++++.|..|.
T Consensus 4 m~aiKkkmqaLk~Ek 18 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDK 18 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=35.50 E-value=18 Score=25.25 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=8.2
Q ss_pred CCceEeccc
Q 032827 67 SRSVFVGNV 75 (132)
Q Consensus 67 sRSIYVGNV 75 (132)
++.|||||+
T Consensus 29 ~~~LfV~nL 37 (127)
T 2a3j_A 29 SQVVLITNI 37 (127)
T ss_dssp CSEEEEESC
T ss_pred CCEEEEeCC
Confidence 688999998
No 140
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=34.98 E-value=11 Score=26.93 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.8
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
-+.++|||||+
T Consensus 53 ~~~~~lfVgnL 63 (156)
T 3n9u_C 53 NRRAAVYVGSF 63 (156)
T ss_dssp ---CEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 46799999999
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=34.66 E-value=18 Score=23.18 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 9 ~~~~~l~V~nl 19 (103)
T 2dgu_A 9 AKVKVLFVRNL 19 (103)
T ss_dssp CCCCCEEEECC
T ss_pred CCCCEEEEeCC
Confidence 35799999999
No 142
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.58 E-value=66 Score=18.84 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032827 17 ELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLrem 38 (132)
-.|++=.+..++|.|.++|++|
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3456667777888888888875
No 143
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.55 E-value=12 Score=23.95 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+..+|||||+
T Consensus 7 ~~~~~l~V~nL 17 (96)
T 2dgx_A 7 GNGADVQVSNI 17 (96)
T ss_dssp SSCEEEEEESC
T ss_pred CCCCEEEEECC
Confidence 45789999999
No 144
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.51 E-value=67 Score=18.70 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032827 17 ELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLrem 38 (132)
-.|++-.+-.++|.|.++|++|
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677778888888888875
No 145
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.49 E-value=64 Score=22.67 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKV 42 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~v 42 (132)
+.||.+|.+++..||.-+..++-+-+++
T Consensus 53 ~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4688888888888887766666555543
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=34.26 E-value=10 Score=23.61 Aligned_cols=8 Identities=50% Similarity=1.223 Sum_probs=7.3
Q ss_pred CceEeccc
Q 032827 68 RSVFVGNV 75 (132)
Q Consensus 68 RSIYVGNV 75 (132)
|+|||||+
T Consensus 2 ~~l~V~nL 9 (90)
T 2ki2_A 2 RNIYVGNL 9 (90)
T ss_dssp EEEEEEEE
T ss_pred cEEEECCC
Confidence 68999998
No 147
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=34.17 E-value=46 Score=30.02 Aligned_cols=29 Identities=14% Similarity=0.452 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
+..+++++.+++++|.+...|.++|+...
T Consensus 19 ~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~ 47 (596)
T 1bg1_A 19 EQHLQDVRKRVQDLEQKMKVVENLQDDFD 47 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999998644
No 148
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=34.11 E-value=15 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.7
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
...-+++.|||||+
T Consensus 8 ~~~~~~~~l~V~nL 21 (175)
T 1fje_B 8 SESTTPFNLFIGNL 21 (175)
T ss_dssp SSCSSSEEEEEECC
T ss_pred CCCCCCcEEEEeCC
Confidence 45567999999999
No 149
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.06 E-value=74 Score=21.54 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHhHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATA----LRQMHAKVG 43 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~k----LremQ~~ve 43 (132)
+.|+.+++++++-+|.++.+ |...+.+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777653 444554444
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.87 E-value=11 Score=25.04 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
+-+.+.|||||+
T Consensus 7 ~~~~~~l~V~nL 18 (111)
T 1whx_A 7 GRSKTVILAKNL 18 (111)
T ss_dssp SEEEEEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 456789999999
No 151
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.53 E-value=16 Score=22.81 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=10.3
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 7 ~~~~~~l~v~nL 18 (91)
T 2dgw_A 7 GTTCHTVKLRGA 18 (91)
T ss_dssp CCCCCEEEEECC
T ss_pred CCCccEEEEECC
Confidence 456899999999
No 152
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.63 E-value=78 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNE 45 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~veke 45 (132)
...||-++++.|..++.|...|+.+.+.++..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45689999999999999988777766655543
No 153
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.62 E-value=21 Score=24.38 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHhhhcCCCCCCCCCCCcccccccCCCceEe
Q 032827 17 ELDDMKIRLKEMEEEAT----ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFV 72 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~----kLremQ~~vekem~~~~~p~~~~~t~eek~E~DsRSIYV 72 (132)
+|++++..+...|..+- ||++-...++.+ ++.-+|..++.|+.-|
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D-----------PDevNK~~~~~R~~~V 54 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELD-----------PDDVNKSTLQSRRAAV 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcHHHHHHHHHHHHHH
Confidence 67778888887776643 566666655543 3455666666666544
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=32.58 E-value=13 Score=24.79 Aligned_cols=8 Identities=50% Similarity=1.090 Sum_probs=7.3
Q ss_pred CceEeccc
Q 032827 68 RSVFVGNV 75 (132)
Q Consensus 68 RSIYVGNV 75 (132)
|+|||||+
T Consensus 1 R~l~V~nl 8 (166)
T 3md3_A 1 RVLYVGNL 8 (166)
T ss_dssp CEEEEEEE
T ss_pred CEEEECCC
Confidence 78999998
No 155
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=32.41 E-value=48 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLrem 38 (132)
-+.+|+.|+.+|..|+.+...|+..
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888999999999988887764
No 156
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.40 E-value=51 Score=21.83 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATA 34 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~k 34 (132)
..||+.+-.+|..+|++.+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~ 40 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEA 40 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777766443
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=32.30 E-value=14 Score=26.89 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=8.2
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
-.++|||||+
T Consensus 14 p~~tlfVgnL 23 (213)
T 4f02_A 14 PMASLYVGDL 23 (213)
T ss_dssp -CCEEEEESC
T ss_pred CCcEEEEeCC
Confidence 4689999999
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=32.11 E-value=14 Score=25.64 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.4
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
.+|+|||||+
T Consensus 3 ~~~~l~V~nL 12 (198)
T 2yh0_A 3 MARRLYVGNI 12 (198)
T ss_dssp -CCEEEEESC
T ss_pred ceeEEEEcCC
Confidence 4799999998
No 159
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.08 E-value=56 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLr 36 (132)
+.|++..+..|..+|++.+.++
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r 25 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMR 25 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888876653
No 160
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.88 E-value=64 Score=26.46 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
|.+.+++-++++.++.++|++.++.+.+.+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 444455555566666666666555555443
No 161
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.84 E-value=15 Score=24.79 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=10.4
Q ss_pred CCCceEeccccc
Q 032827 66 DSRSVFVGNVTV 77 (132)
Q Consensus 66 DsRSIYVGNV~~ 77 (132)
.++.|||||++.
T Consensus 14 p~~~l~V~nLp~ 25 (102)
T 1x4d_A 14 TRRVVHIMDFQR 25 (102)
T ss_dssp CCCEEEEESCCC
T ss_pred CCCEEEEeCCCC
Confidence 588999999966
No 162
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.75 E-value=20 Score=22.81 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
-..+.|||||+
T Consensus 7 ~~~~~l~V~nL 17 (104)
T 2dhg_A 7 GPEYSLFVGDL 17 (104)
T ss_dssp SCCCCEEEECC
T ss_pred CCCcEEEEeCC
Confidence 35789999999
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=31.72 E-value=16 Score=22.89 Aligned_cols=11 Identities=9% Similarity=0.610 Sum_probs=9.3
Q ss_pred CCCceEecccc
Q 032827 66 DSRSVFVGNVT 76 (132)
Q Consensus 66 DsRSIYVGNV~ 76 (132)
.++.|||||++
T Consensus 7 ~~~~l~V~nLp 17 (97)
T 1nu4_A 7 PNHTIYINNLN 17 (97)
T ss_dssp CCSEEEEESCC
T ss_pred CCCEEEEeCCC
Confidence 47899999983
No 164
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.71 E-value=66 Score=19.88 Aligned_cols=17 Identities=0% Similarity=0.184 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032827 18 LDDMKIRLKEMEEEATA 34 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~k 34 (132)
++++..++.+++.+-..
T Consensus 24 ~~~Le~~~~~L~~~n~~ 40 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQ 40 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 165
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=31.44 E-value=22 Score=23.08 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=9.1
Q ss_pred CCCceEecccc
Q 032827 66 DSRSVFVGNVT 76 (132)
Q Consensus 66 DsRSIYVGNV~ 76 (132)
.++.|||||++
T Consensus 14 ~~~~l~V~nLp 24 (105)
T 2nlw_A 14 IDSVIVVDNVP 24 (105)
T ss_dssp CCSEEEEESCC
T ss_pred CCCEEEEeCCC
Confidence 36889999994
No 166
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=31.38 E-value=62 Score=18.90 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032827 18 LDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLre 37 (132)
+.++|..-..+|+|.+++++
T Consensus 4 iaaikeeqaaieeeiqaike 23 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665554
No 167
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.38 E-value=76 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcC
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNEMAS 48 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~vekem~~ 48 (132)
+..++..++.+|.+++.|-.+|++--+.++-+++.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999998877777766543
No 168
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.36 E-value=69 Score=22.39 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGNEMA 47 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~vekem~ 47 (132)
++.++.++++++++.+.|+.+...+..-..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 81 KRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999998888887776543
No 169
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=31.30 E-value=87 Score=20.84 Aligned_cols=30 Identities=3% Similarity=0.143 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
-.+.++.++++++++.+.|..+.+.++...
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999888888887777643
No 170
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=31.16 E-value=15 Score=23.86 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=8.7
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
.+++|||||+
T Consensus 7 ~~~~l~V~nl 16 (115)
T 3lqv_A 7 VNRILYIRNL 16 (115)
T ss_dssp CCSEEEEESC
T ss_pred CCCEEEEeCC
Confidence 3689999999
No 171
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=31.14 E-value=15 Score=25.19 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=8.0
Q ss_pred CCceEeccc
Q 032827 67 SRSVFVGNV 75 (132)
Q Consensus 67 sRSIYVGNV 75 (132)
+-||||||+
T Consensus 7 ~~wL~VgNL 15 (89)
T 2wbr_A 7 SSWLLLKNL 15 (89)
T ss_dssp CCEEEEECC
T ss_pred cceEEEeCC
Confidence 568999999
No 172
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=31.06 E-value=19 Score=25.24 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=9.9
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 39 ~~~~~~lfVgnL 50 (126)
T 2hgm_A 39 SANDGFVRLRGL 50 (126)
T ss_dssp SSSCCEEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 356788999999
No 173
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=30.94 E-value=24 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=12.5
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
........+.|||||+
T Consensus 66 ~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNL 81 (150)
T ss_dssp CSSSSTTSCEEEEESC
T ss_pred cccCCCCCCEEEEeCC
Confidence 3455667899999999
No 174
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.93 E-value=30 Score=23.09 Aligned_cols=11 Identities=27% Similarity=0.132 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 13 ~p~~~l~V~nL 23 (104)
T 1wex_A 13 SVSPVVHVRGL 23 (104)
T ss_dssp CCCSEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 34789999999
No 175
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=30.82 E-value=48 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 032827 19 DDMKIRLKEMEEEATALRQMHAKVGNEMA 47 (132)
Q Consensus 19 EemK~Rl~EMEeEA~kLremQ~~vekem~ 47 (132)
-+|++.|.+|.+||++||++ +++++.++
T Consensus 472 ~~~~~~~~~i~~~a~~~r~~-~~~~~~~~ 499 (546)
T 1fgj_A 472 GPMNRAYVEIQDEYTKMQEL-SALQARVN 499 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 35889999999999999994 45555544
No 176
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.57 E-value=91 Score=21.28 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATA 34 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~k 34 (132)
+.|+..+++|+.-+|++..+
T Consensus 43 E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888877664
No 177
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.51 E-value=85 Score=18.38 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032827 17 ELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLrem 38 (132)
-.|++=.+-.++|.|.++|++|
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 3455666677788888888775
No 178
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=30.12 E-value=55 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLre 37 (132)
++|..|+.+++.|+.+...|+.
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667777777766655554
No 179
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.03 E-value=33 Score=22.90 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=10.3
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 14 ~~~~~~l~V~nL 25 (118)
T 2db1_A 14 GGEGYVVKLRGL 25 (118)
T ss_dssp BCCCCEEEEESC
T ss_pred CCCCcEEEEeCC
Confidence 456899999999
No 180
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.91 E-value=12 Score=27.35 Aligned_cols=50 Identities=8% Similarity=0.240 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHhHHHHHhhhcCCCCCCCCCCCcccccccCCCceEeccc
Q 032827 15 QVELDDMKIRLKEMEEEAT----ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNV 75 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~----kLremQ~~vekem~~~~~p~~~~~t~eek~E~DsRSIYVGNV 75 (132)
...|++++..+...|..+- ||++....++.+ ++.-+|..+++|+.-|-.+
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~D-----------PDevNK~tl~~R~~~Vs~l 74 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQKVRDAEKQYEKD-----------PDELNKRTLTDREGVAVSI 74 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcHHHHHHHHHHHHHHHHH
Confidence 3567888888888886653 566666666553 4566777777777655544
No 181
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.86 E-value=48 Score=22.97 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLre 37 (132)
++.++++++.++++|.++|++
T Consensus 15 ~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 15 KVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 444455555555555444433
No 182
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=29.79 E-value=19 Score=23.48 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=10.5
Q ss_pred CcccccccCCCceEeccc
Q 032827 58 SLANREEVDSRSVFVGNV 75 (132)
Q Consensus 58 t~eek~E~DsRSIYVGNV 75 (132)
...|..-.+...|||||+
T Consensus 10 ~~~en~~~~gt~lfV~nL 27 (99)
T 4fxv_A 10 HHHENLYFQGTNLIVNYL 27 (99)
T ss_dssp ------CCCCSEEEEESC
T ss_pred cccccccCCCCEEEEeCC
Confidence 344555667889999999
No 183
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=29.51 E-value=59 Score=21.72 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLr 36 (132)
..|.+++-.+++++++|..+++
T Consensus 12 ~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 12 RRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999988776
No 184
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=29.33 E-value=63 Score=29.00 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
+..+++++.++.++|++..+|.++|+...
T Consensus 18 ~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~ 46 (585)
T 1y1u_A 18 NQRFEELRLITQDTENELKKLQQTQEYFI 46 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888999999999999999999998643
No 185
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.29 E-value=60 Score=20.61 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEA 32 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA 32 (132)
||-++++.|..++-|+
T Consensus 57 Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 186
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.80 E-value=47 Score=19.46 Aligned_cols=19 Identities=26% Similarity=0.435 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~ 33 (132)
.+||+++|++-.-+|++..
T Consensus 13 qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3577777777666666643
No 187
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.35 E-value=84 Score=22.01 Aligned_cols=28 Identities=7% Similarity=0.375 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 19 DDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 19 EemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
+++...|..-|+-...|++||+.++++.
T Consensus 54 n~~E~eV~~Qe~~~~sLKEL~~s~e~d~ 81 (91)
T 4aj5_A 54 NKLELEIQYQEQTNNSLKELCESLEEDY 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555567999999888764
No 188
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=28.34 E-value=17 Score=28.71 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHA 40 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~ 40 (132)
|.+|++|+.||.+|+.++.+|.++-+
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~l~~~~~ 29 (215)
T 2gtl_O 4 DEIIDKLIERTNKITTSISHVESLLD 29 (215)
T ss_dssp TTTTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHhhhhh
Confidence 34556677777777777666655443
No 189
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=28.16 E-value=29 Score=22.57 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
.-+.+.|||||+
T Consensus 8 ~~~~~~l~V~nL 19 (107)
T 2lmi_A 8 VDDVFLIRAQGL 19 (107)
T ss_dssp CSSCCEEEEECC
T ss_pred CCCccEEEEeCC
Confidence 456889999999
No 190
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.03 E-value=1.2e+02 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLre 37 (132)
..+|.+++.++++++++...|..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666655543
No 191
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.48 E-value=63 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGNE 45 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~veke 45 (132)
-++++.++.+++.|-..|+.--..+.++
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555433344433
No 192
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.39 E-value=1.1e+02 Score=21.89 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhH
Q 032827 16 VELDDMKIRLKEMEEEAT----ALRQMH 39 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~----kLremQ 39 (132)
+++.++|..+..||.|-. |||++.
T Consensus 25 ~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777643 777744
No 193
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.26 E-value=81 Score=23.63 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGN 44 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~vek 44 (132)
++.+++++++++++.+.|+++.+.++.
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 81 FAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888888887777666655543
No 194
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.26 E-value=64 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKVGNE 45 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~veke 45 (132)
..||-++++.|..++.|...|+.+.+.++..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~ 67 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENS 67 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4688888888888888887776655555443
No 195
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.24 E-value=1.1e+02 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhHHHHH
Q 032827 17 ELDDMKIRL-KEMEEEATALRQMHAKVG 43 (132)
Q Consensus 17 ELEemK~Rl-~EMEeEA~kLremQ~~ve 43 (132)
.|.+||.+| .||+.-...|..+|.+++
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~i~ 68 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKEIE 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554 344444445666666554
No 196
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=27.17 E-value=34 Score=22.13 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=10.5
Q ss_pred cCCCceEecccccc
Q 032827 65 VDSRSVFVGNVTVK 78 (132)
Q Consensus 65 ~DsRSIYVGNV~~k 78 (132)
..++.|||||++..
T Consensus 25 ~~~~~l~V~nl~~~ 38 (110)
T 1wf1_A 25 SINSRVFIGNLNTA 38 (110)
T ss_dssp TCSSEEEECSCCCS
T ss_pred CCCcEEEEeCCCcc
Confidence 34589999998544
No 197
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.10 E-value=37 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLre 37 (132)
|.+++|+++.+++++..+|.+
T Consensus 27 eN~~Lk~e~~~l~~~~~~~~~ 47 (255)
T 2j5u_A 27 ENQHLKERLEELAQLESEVAD 47 (255)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 198
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=27.07 E-value=22 Score=23.72 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=9.3
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...|.|||||+
T Consensus 4 ~p~~~lfV~nL 14 (110)
T 3s8s_A 4 IPLKEVTFARL 14 (110)
T ss_dssp SCCCEEEEESC
T ss_pred CCCcEEEEECC
Confidence 34789999999
No 199
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.84 E-value=28 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~ 33 (132)
..+++|..+|.+||..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666655443
No 200
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.81 E-value=87 Score=20.48 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 032827 16 VELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLrem 38 (132)
.=|..++.+++++++|...|+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888889999888877763
No 201
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.79 E-value=80 Score=19.42 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLre 37 (132)
..||.++...|+.+|...++|+.
T Consensus 19 peelaaleselqalekklaalks 41 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766665543
No 202
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.70 E-value=44 Score=20.96 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.8
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
....+.|||||+
T Consensus 14 ~~~~~~l~V~nl 25 (97)
T 1why_A 14 ANPTTRLWVGGL 25 (97)
T ss_dssp CCCCSCEEEECC
T ss_pred CCCCCEEEEeCC
Confidence 345789999998
No 203
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.66 E-value=39 Score=21.80 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=10.2
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 12 ~~~~~~l~V~nL 23 (104)
T 1wg5_A 12 TANDGFVRLRGL 23 (104)
T ss_dssp CSCCCEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 456789999999
No 204
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=26.62 E-value=19 Score=23.30 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=8.9
Q ss_pred CCCceEecccc
Q 032827 66 DSRSVFVGNVT 76 (132)
Q Consensus 66 DsRSIYVGNV~ 76 (132)
.++.|||||++
T Consensus 5 ~~~~vfV~nLp 15 (100)
T 3ns6_A 5 SDQYIVVNGAP 15 (100)
T ss_dssp GGGEEEEESCC
T ss_pred cCcEEEEeCCC
Confidence 36789999984
No 205
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=26.60 E-value=35 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHhHHHHHh
Q 032827 18 LDDMKIRLKEMEEEAT-----ALRQMHAKVGN 44 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~-----kLremQ~~vek 44 (132)
|+---+|+.|.=-++. .|.++|+++..
T Consensus 12 le~c~~Kl~eF~~~vdnk~mvWL~EIeeEA~R 43 (47)
T 2qfa_C 12 LELCDQKLMEFLCNMDNKDLVWLEEIQEEAER 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 3334455555433332 46777766553
No 206
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.60 E-value=18 Score=24.78 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHH
Q 032827 21 MKIRLKEMEEEAT 33 (132)
Q Consensus 21 mK~Rl~EMEeEA~ 33 (132)
++.|++|||+|..
T Consensus 63 ~~~ri~elEeElk 75 (77)
T 2w83_C 63 LEEKNRELEEELR 75 (77)
T ss_dssp HHHHC--------
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555543
No 207
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.30 E-value=1.3e+02 Score=20.04 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEE 31 (132)
Q Consensus 17 ELEemK~Rl~EMEeE 31 (132)
++++++.++.++.+.
T Consensus 11 ~~~~~~~~l~~L~~~ 25 (112)
T 1l8d_A 11 KKTTIEEERNEITQR 25 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 208
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.76 E-value=55 Score=21.66 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=10.1
Q ss_pred ccCCCceEeccc
Q 032827 64 EVDSRSVFVGNV 75 (132)
Q Consensus 64 E~DsRSIYVGNV 75 (132)
..+.+.|||||+
T Consensus 22 ~~~~~~l~V~nL 33 (124)
T 1wel_A 22 HEAGFCVYLKGL 33 (124)
T ss_dssp CCCCCEEEEECC
T ss_pred CCCCcEEEEeCC
Confidence 456789999999
No 209
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.66 E-value=22 Score=21.16 Aligned_cols=8 Identities=25% Similarity=0.767 Sum_probs=6.9
Q ss_pred CceEeccc
Q 032827 68 RSVFVGNV 75 (132)
Q Consensus 68 RSIYVGNV 75 (132)
+.|||||+
T Consensus 1 ~~l~v~nl 8 (77)
T 1uaw_A 1 CKMFIGGL 8 (77)
T ss_dssp CCEEEESC
T ss_pred CEEEEeCC
Confidence 47999999
No 210
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.66 E-value=63 Score=23.75 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 032827 25 LKEMEEEATAL 35 (132)
Q Consensus 25 l~EMEeEA~kL 35 (132)
|+|++.|...|
T Consensus 73 vqeLqgEI~~L 83 (121)
T 3mq7_A 73 VEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 211
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.59 E-value=41 Score=22.30 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=9.2
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
..++.|||||+
T Consensus 13 ~p~~~l~V~nL 23 (101)
T 2cq1_A 13 APSRVLHIRKL 23 (101)
T ss_dssp SCCSEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 34689999999
No 212
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=25.36 E-value=84 Score=21.33 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHhHH
Q 032827 14 KQVELDDMKIRLKEMEEEAT----ALRQMHA 40 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~----kLremQ~ 40 (132)
-.+++.++|..+..||.|-. |||++.-
T Consensus 6 L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 36 (82)
T 3tq7_B 6 LNQQLVDLKLTVDGLEKERDFYFSKLRDIEL 36 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999954 8888654
No 213
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=25.31 E-value=79 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
.+.++.++++++++.+.|..+.+.++...
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777776543
No 214
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=25.19 E-value=20 Score=22.87 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...+.|||||+
T Consensus 27 ~~~~~l~V~nl 37 (107)
T 3ulh_A 27 ETGGKLLVSNL 37 (107)
T ss_dssp CCSEEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 45789999999
No 215
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.19 E-value=92 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 15 QVELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
+++|++-+.|=..+|.|+..|.+.|.+.+..|
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555544433
No 216
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.14 E-value=82 Score=17.34 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKE 27 (132)
Q Consensus 16 ~ELEemK~Rl~E 27 (132)
+|||.++.||..
T Consensus 8 keledlqerlrk 19 (27)
T 3twe_A 8 KELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555443
No 217
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=25.14 E-value=1e+02 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHh
Q 032827 15 QVELDDMKIRLKEME-----EEATALRQMHAKVGN 44 (132)
Q Consensus 15 d~ELEemK~Rl~EME-----eEA~kLremQ~~vek 44 (132)
+--|++|+.+|+.-| .||+.|+.|.++.+.
T Consensus 42 ~~SleEIqkKLeAAEERRks~Ea~~lk~laekreh 76 (143)
T 3ryc_E 42 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREH 76 (143)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356788888888855 356667666655443
No 218
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.83 E-value=70 Score=25.06 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 032827 17 ELDDMKIRLKEMEEEATALRQMH 39 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ 39 (132)
+|+....++.++++|.++|+++-
T Consensus 37 ~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 37 ELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455566666777777753
No 219
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.74 E-value=1.1e+02 Score=17.78 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032827 18 LDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLrem 38 (132)
.|++-.+-.++|.|.++|++|
T Consensus 9 VEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 455566667777787777765
No 220
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.74 E-value=1e+02 Score=19.24 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032827 18 LDDMKIRLKEMEEEATA 34 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~k 34 (132)
++++..++..++.+-..
T Consensus 25 ~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSA 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 221
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.68 E-value=1.1e+02 Score=20.43 Aligned_cols=27 Identities=7% Similarity=0.377 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHAKV 42 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~~v 42 (132)
.++++++.-|..++.....|..+|...
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777776666654
No 222
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=24.61 E-value=30 Score=25.47 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=9.7
Q ss_pred cCCCceEecccc
Q 032827 65 VDSRSVFVGNVT 76 (132)
Q Consensus 65 ~DsRSIYVGNV~ 76 (132)
.+++.|||||++
T Consensus 2 ~~~~~l~V~nL~ 13 (205)
T 3tyt_A 2 ADSPVLMVYGLD 13 (205)
T ss_dssp CCCSEEEEECCC
T ss_pred CCCCEEEEeCCC
Confidence 357889999995
No 223
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.56 E-value=1.1e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 032827 16 VELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLrem 38 (132)
.-++.++.++++++.|.++|+.-
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888887776653
No 224
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=24.48 E-value=23 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.2
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
.++...++++|||||+
T Consensus 15 ~~~~~~~~~~l~V~nL 30 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNL 30 (261)
T ss_dssp TCCSSCGGGEEEEESC
T ss_pred CCCCCCCCCEEEEECC
Confidence 4566678899999999
No 225
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.31 E-value=1.1e+02 Score=17.74 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032827 18 LDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLrem 38 (132)
.|++=.+-.++|.|.++|++|
T Consensus 9 vEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 455556666788888888876
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.25 E-value=25 Score=24.13 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
.+.+.|||||+
T Consensus 14 ~~~~~LfV~nL 24 (105)
T 1sjq_A 14 VPSRVIHIRKL 24 (105)
T ss_dssp CCCCEEEECSC
T ss_pred CCCCEEEEeCC
Confidence 35789999999
No 227
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=24.13 E-value=54 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
+..+|+++|+.+.==|++++.|+.++..+++..
T Consensus 21 ~m~~le~Lk~~~~fTeeD~~~L~~l~~~l~~~~ 53 (195)
T 2veb_A 21 NLEDLKLLKEAVMFTAEDEEYIQKAGEVLEDQV 53 (195)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHHGGGH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhHHHHHHHH
Confidence 467999999999999999999999998887654
No 228
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.83 E-value=1.2e+02 Score=21.52 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVGNEM 46 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~vekem 46 (132)
-++.++.++.+++++.+.|+++.+.++..+
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888777776666544
No 229
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.74 E-value=1.2e+02 Score=21.45 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 032827 18 LDDMKIRLKEMEEEATALRQMHAKVGN 44 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLremQ~~vek 44 (132)
++.++.++.+++++.+.|..+.+.++.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777776666555554443
No 230
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.74 E-value=1.1e+02 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~ 33 (132)
.||++++.++++++++.+
T Consensus 10 ~el~~~~~~~~~l~~~~~ 27 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNE 27 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666555544
No 231
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.72 E-value=25 Score=24.35 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=11.0
Q ss_pred cCCCceEecccccc
Q 032827 65 VDSRSVFVGNVTVK 78 (132)
Q Consensus 65 ~DsRSIYVGNV~~k 78 (132)
--++.|||||++..
T Consensus 23 ~p~~~l~V~NLp~~ 36 (112)
T 1x4f_A 23 ELGRVIHLSNLPHS 36 (112)
T ss_dssp CCCCEEEEESCCCS
T ss_pred CCCCEEEEeCCCCc
Confidence 34789999999764
No 232
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=23.68 E-value=5.8 Score=28.09 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=12.6
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
......+++.|||||+
T Consensus 21 ~~~~~~~~~~l~V~nL 36 (216)
T 2qfj_A 21 RQGALAIMSRVYVGSI 36 (216)
T ss_dssp HHHHHHHHTEEEEECC
T ss_pred cCcccCcCCEEEEECC
Confidence 3455667899999999
No 233
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.67 E-value=1.3e+02 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
-++++..+|..++.|-..|+.-.+.+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777666665444443
No 234
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.55 E-value=25 Score=23.33 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=8.0
Q ss_pred CCceEeccc
Q 032827 67 SRSVFVGNV 75 (132)
Q Consensus 67 sRSIYVGNV 75 (132)
+|+|||||+
T Consensus 2 ~~~l~v~nl 10 (167)
T 1fxl_A 2 KTNLIVNYL 10 (167)
T ss_dssp CSEEEEESC
T ss_pred cceEEEcCC
Confidence 588999998
No 235
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=23.52 E-value=23 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=7.8
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
+.+.+-++|.|||||+
T Consensus 34 ~~~~~~~~~~l~V~nL 49 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNL 49 (292)
T ss_dssp --------CEEEEEEE
T ss_pred ccccCCCCCEEEEeCC
Confidence 4456778999999998
No 236
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.40 E-value=1.8e+02 Score=24.31 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALR 36 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLr 36 (132)
+|..+++.+++++|+++..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999988865543
No 237
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.30 E-value=43 Score=20.91 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=9.0
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...+.|||||+
T Consensus 13 ~~~~~l~v~nL 23 (98)
T 2cqp_A 13 PGPTIIKVQNM 23 (98)
T ss_dssp CSSEEEEEESC
T ss_pred CCCCEEEEeCC
Confidence 34678999999
No 238
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.04 E-value=85 Score=19.67 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 032827 14 KQVELDDMKIRLKEMEEEATAL 35 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kL 35 (132)
....++.++.||.+||.....|
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999876655
No 239
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.97 E-value=1.2e+02 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032827 17 ELDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLrem 38 (132)
-+|++=.+..++|.|.++|++|
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556666677777777665
No 240
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=22.93 E-value=33 Score=23.43 Aligned_cols=13 Identities=8% Similarity=-0.187 Sum_probs=10.6
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
....++.|||||+
T Consensus 42 ~~~~~~~l~V~nL 54 (129)
T 2kxn_B 42 NPDPNCCLGVFGL 54 (129)
T ss_dssp CCCCSSCBCEETC
T ss_pred CCCCCCEEEEeCC
Confidence 3456899999999
No 241
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.64 E-value=1e+02 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=8.8
Q ss_pred ChHHHHHHHHHHHHHHH
Q 032827 14 KQVELDDMKIRLKEMEE 30 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEe 30 (132)
.-+|.-++|.-|..-|+
T Consensus 11 t~qeylevK~ALaaSeA 27 (63)
T 2w6a_A 11 TLQEYLELKKALATSEA 27 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHH
Confidence 34565566655554443
No 242
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=22.50 E-value=30 Score=21.89 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=9.4
Q ss_pred cCCCceEeccc
Q 032827 65 VDSRSVFVGNV 75 (132)
Q Consensus 65 ~DsRSIYVGNV 75 (132)
...+.|||||+
T Consensus 11 ~~~~~l~V~nL 21 (99)
T 2la6_A 11 SDNNTIFVQGL 21 (99)
T ss_dssp CCCSEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 45789999999
No 243
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=22.45 E-value=22 Score=22.29 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=5.7
Q ss_pred CceEeccc
Q 032827 68 RSVFVGNV 75 (132)
Q Consensus 68 RSIYVGNV 75 (132)
.+|||||+
T Consensus 2 ~~l~V~nL 9 (90)
T 3p5t_L 2 IALYIGNL 9 (90)
T ss_dssp --CEEESC
T ss_pred eEEEEeCC
Confidence 57999999
No 244
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=22.27 E-value=1.3e+02 Score=20.82 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHAKV 42 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~~v 42 (132)
.|++++|+.+..|..=..++.+||.++
T Consensus 6 ~~~~~l~~~~~~~~~l~~~~~~l~~~l 32 (182)
T 3kqg_A 6 AQIPELKSDLEKASALNTKIRALQGSL 32 (182)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444333444444433
No 245
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.07 E-value=1.4e+02 Score=22.65 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhHHHHH
Q 032827 16 VELDDMKIRLKEMEEEAT----ALRQMHAKVG 43 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~----kLremQ~~ve 43 (132)
++++.|++.+.|..+|+. .|++-|.+|.
T Consensus 18 ~D~~s~~~eleEnqeEL~iVgkML~EEqgKVD 49 (167)
T 4gkw_A 18 QDTESLQKQLEENQEELEIVGNMLREEQGKVD 49 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455667777777766664 2555554443
No 246
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=21.97 E-value=32 Score=23.29 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=10.7
Q ss_pred ccccccCCCceEeccc
Q 032827 60 ANREEVDSRSVFVGNV 75 (132)
Q Consensus 60 eek~E~DsRSIYVGNV 75 (132)
+.....+++.|||||.
T Consensus 32 ~~~~~~~~~~lfVgnl 47 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGE 47 (121)
T ss_dssp ---CCCCCCEEEEECS
T ss_pred CCCCCCCCCEEEEcCC
Confidence 3344567899999996
No 247
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.88 E-value=73 Score=20.55 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLre 37 (132)
=|..++.++++|+++.+.|+.
T Consensus 58 YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 366677777777777766654
No 248
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.77 E-value=29 Score=24.26 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.9
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
.++.|||||+
T Consensus 30 ps~~LfVgNL 39 (119)
T 2ad9_A 30 PSRVIHIRKL 39 (119)
T ss_dssp CCSEEEEESC
T ss_pred CCCEEEEeCC
Confidence 4789999999
No 249
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=21.71 E-value=29 Score=23.66 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=8.4
Q ss_pred CCceEeccc
Q 032827 67 SRSVFVGNV 75 (132)
Q Consensus 67 sRSIYVGNV 75 (132)
++.|||||+
T Consensus 21 s~~l~V~NL 29 (100)
T 3r27_A 21 SPVVHIRGL 29 (100)
T ss_dssp CSEEEEESC
T ss_pred CcEEEEeCC
Confidence 789999999
No 250
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.67 E-value=1.3e+02 Score=17.56 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032827 18 LDDMKIRLKEMEEEATALRQM 38 (132)
Q Consensus 18 LEemK~Rl~EMEeEA~kLrem 38 (132)
.|++=.+=.++|.|.++|++|
T Consensus 10 vEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 455556666788888888775
No 251
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=21.46 E-value=69 Score=23.11 Aligned_cols=20 Identities=45% Similarity=0.591 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATAL 35 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kL 35 (132)
..|+++|+++++||++.+.|
T Consensus 15 a~L~~l~~ql~~l~~~l~~l 34 (147)
T 2rjz_A 15 ANLEAYKAQMKEMEESFGAL 34 (147)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 47888999999999887653
No 252
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.24 E-value=1.7e+02 Score=20.05 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHAKV 42 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~~v 42 (132)
.|-+.+..+|..+++|.+.|+++...+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777777777776655443
No 253
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.10 E-value=1.5e+02 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQMHA 40 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLremQ~ 40 (132)
-||..++++|++.++|++.|+.-..
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4788889999999999988876433
No 254
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.05 E-value=1.7e+02 Score=19.10 Aligned_cols=29 Identities=3% Similarity=0.134 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAKVGNE 45 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~veke 45 (132)
=|..++.+..++++|.+.|+.-+..+...
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888887755555444
No 255
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.00 E-value=1.2e+02 Score=20.19 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLre 37 (132)
.+++.++..|..+|++.+.++.
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888776543
No 256
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.87 E-value=1.5e+02 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 032827 17 ELDDMKIRLKEMEEEATALRQMHAK 41 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~kLremQ~~ 41 (132)
|=+.++.+|.+++.|...|+++-.+
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777888888887777775443
No 257
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=20.86 E-value=56 Score=20.01 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEATALRQ 37 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~kLre 37 (132)
.|||++..+-.-+|.+..+|+.
T Consensus 6 rELeEa~Erae~ae~~vnkLR~ 27 (45)
T 3zwh_Q 6 RELEDATETADAMNREVSSLKN 27 (45)
T ss_dssp SHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888877776
No 258
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=20.77 E-value=30 Score=24.26 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.0
Q ss_pred cccCCCceEeccc
Q 032827 63 EEVDSRSVFVGNV 75 (132)
Q Consensus 63 ~E~DsRSIYVGNV 75 (132)
...+.+.|||||+
T Consensus 68 ~~~~~~~l~V~nL 80 (165)
T 1rk8_A 68 RSVEGWILFVTSI 80 (165)
T ss_dssp CCC-CEEEEEESC
T ss_pred CCCCCCEEEEeCC
Confidence 4566788999999
No 259
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=20.68 E-value=31 Score=27.05 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=11.5
Q ss_pred ccCCCceEeccccc
Q 032827 64 EVDSRSVFVGNVTV 77 (132)
Q Consensus 64 E~DsRSIYVGNV~~ 77 (132)
..++|+|||||++.
T Consensus 131 ~~~~rtLfVgnL~~ 144 (240)
T 3u1l_A 131 RKKNKTLYVGGIDG 144 (240)
T ss_dssp CCCCCEEEEECTTG
T ss_pred ccCCceeecCCCCh
Confidence 45789999999954
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=20.68 E-value=29 Score=26.26 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=7.6
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
+.++|||||+
T Consensus 67 ~~~~lfVgnL 76 (229)
T 3q2s_C 67 KRIALYIGNL 76 (229)
T ss_dssp --CEEEEESC
T ss_pred CccEEEEeCC
Confidence 6788999998
No 261
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=20.61 E-value=33 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=8.6
Q ss_pred CCCceEeccc
Q 032827 66 DSRSVFVGNV 75 (132)
Q Consensus 66 DsRSIYVGNV 75 (132)
.++.|||||+
T Consensus 2 ~~~~l~v~nl 11 (168)
T 1b7f_A 2 SNTNLIVNYL 11 (168)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCC
Confidence 3689999999
No 262
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.53 E-value=1.7e+02 Score=18.56 Aligned_cols=17 Identities=18% Similarity=-0.089 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEA 32 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA 32 (132)
..++.+..||..||..+
T Consensus 48 ~~~~~Le~rl~~le~~l 64 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVL 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777776654
No 263
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=20.44 E-value=1.2e+02 Score=18.98 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032827 17 ELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 17 ELEemK~Rl~EMEeEA~ 33 (132)
|++-++.-|+|+++|..
T Consensus 29 EV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555443
No 264
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=20.37 E-value=49 Score=22.56 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=11.1
Q ss_pred ccccCCCceEeccc
Q 032827 62 REEVDSRSVFVGNV 75 (132)
Q Consensus 62 k~E~DsRSIYVGNV 75 (132)
......+.|||||+
T Consensus 65 ~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 65 MDVEGMTSLKVDNL 78 (158)
T ss_dssp CCCCBCCEEEEESC
T ss_pred cCCCCCCEEEEeCC
Confidence 34466899999999
No 265
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=20.30 E-value=1.5e+02 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032827 14 KQVELDDMKIRLKEMEEEATALRQMHAKVG 43 (132)
Q Consensus 14 ~d~ELEemK~Rl~EMEeEA~kLremQ~~ve 43 (132)
-..+|++||..+..++++...+.-++.+++
T Consensus 36 KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~ 65 (96)
T 3fx0_A 36 KQEVIDKLKEEAEQHKIVMETVPVLKAQAD 65 (96)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346888888888888877666666665554
No 266
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.24 E-value=1.4e+02 Score=24.86 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032827 16 VELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 16 ~ELEemK~Rl~EMEeEA~ 33 (132)
.||+.+++++++++++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~ 27 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIK 27 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 267
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=20.17 E-value=82 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032827 15 QVELDDMKIRLKEMEEEAT 33 (132)
Q Consensus 15 d~ELEemK~Rl~EMEeEA~ 33 (132)
=.+|.++++.+.+++.+++
T Consensus 22 lr~ia~l~r~~~~i~~~~n 40 (171)
T 2p2u_A 22 LAEIATIDRKVGEIEAQMN 40 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678888888888776665
Done!