Query 032830
Match_columns 132
No_of_seqs 113 out of 1124
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3626 Organic anion transpor 99.3 3.4E-12 7.4E-17 112.3 8.4 93 2-94 587-699 (735)
2 COG2271 UhpC Sugar phosphate p 99.1 8.1E-11 1.8E-15 98.3 6.3 80 2-83 118-199 (448)
3 TIGR00805 oat sodium-independe 99.1 1.7E-10 3.6E-15 100.4 7.8 91 2-92 519-629 (633)
4 TIGR00892 2A0113 monocarboxyla 98.9 2.9E-09 6.3E-14 88.5 6.4 81 10-91 342-422 (455)
5 KOG1330 Sugar transporter/spin 98.8 5E-09 1.1E-13 88.5 3.4 100 2-101 350-459 (493)
6 TIGR00893 2A0114 d-galactonate 98.7 2.7E-08 5.9E-13 77.6 6.4 77 3-81 84-160 (399)
7 PRK11663 regulatory protein Uh 98.7 1.6E-07 3.5E-12 77.3 9.6 73 6-80 116-188 (434)
8 PF07690 MFS_1: Major Facilita 98.6 5.8E-08 1.3E-12 75.4 5.4 80 3-84 87-166 (352)
9 PRK10489 enterobactin exporter 98.6 2E-07 4.4E-12 75.8 8.7 72 6-79 317-388 (417)
10 PRK03893 putative sialic acid 98.6 2.1E-07 4.5E-12 76.9 7.7 56 19-76 384-439 (496)
11 COG2814 AraJ Arabinose efflux 98.6 2.6E-07 5.7E-12 76.9 8.0 74 7-82 107-180 (394)
12 TIGR00900 2A0121 H+ Antiporter 98.5 3.5E-07 7.5E-12 71.3 7.7 77 3-81 94-170 (365)
13 PRK11273 glpT sn-glycerol-3-ph 98.5 4.9E-07 1.1E-11 74.7 8.9 59 24-83 370-428 (452)
14 TIGR00880 2_A_01_02 Multidrug 98.5 8.4E-07 1.8E-11 59.7 8.4 77 4-82 54-130 (141)
15 PF03137 OATP: Organic Anion T 98.5 1.7E-08 3.8E-13 86.7 0.0 64 2-65 452-515 (539)
16 TIGR00894 2A0114euk Na(+)-depe 98.5 1.9E-07 4.1E-12 77.0 5.7 72 6-79 136-208 (465)
17 TIGR00889 2A0110 nucleoside tr 98.5 7.4E-07 1.6E-11 73.4 8.9 74 11-84 318-396 (418)
18 TIGR00712 glpT glycerol-3-phos 98.5 1.7E-06 3.7E-11 71.2 11.0 73 8-82 125-198 (438)
19 TIGR00881 2A0104 phosphoglycer 98.5 1.2E-07 2.5E-12 74.1 3.9 77 3-81 85-162 (379)
20 PRK09556 uhpT sugar phosphate 98.5 1E-06 2.2E-11 73.2 9.2 64 23-87 371-446 (467)
21 PRK11102 bicyclomycin/multidru 98.5 1.5E-06 3.2E-11 69.1 9.5 76 4-81 82-157 (377)
22 PRK05122 major facilitator sup 98.4 1.8E-06 3.8E-11 69.5 9.5 72 9-82 310-381 (399)
23 TIGR00710 efflux_Bcr_CflA drug 98.4 1.5E-06 3.2E-11 68.8 8.8 77 4-82 96-172 (385)
24 PF05977 MFS_3: Transmembrane 98.4 2.5E-06 5.4E-11 73.3 10.7 81 2-84 308-388 (524)
25 TIGR00711 efflux_EmrB drug res 98.4 3.6E-07 7.8E-12 74.9 5.2 78 3-82 92-169 (485)
26 PRK03545 putative arabinose tr 98.4 1.5E-06 3.3E-11 70.0 8.6 74 7-82 103-176 (390)
27 PRK14995 methyl viologen resis 98.4 1.2E-06 2.5E-11 73.6 8.2 75 5-81 98-173 (495)
28 TIGR02332 HpaX 4-hydroxyphenyl 98.4 9.1E-07 2E-11 72.5 6.6 75 4-80 99-179 (412)
29 PRK09584 tppB putative tripept 98.4 3.6E-06 7.8E-11 71.3 10.0 80 9-90 120-201 (500)
30 PRK10207 dipeptide/tripeptide 98.4 2E-06 4.4E-11 72.8 8.5 78 7-86 111-190 (489)
31 TIGR00924 yjdL_sub1_fam amino 98.3 1.8E-06 3.9E-11 72.6 8.0 74 8-83 109-185 (475)
32 PRK10213 nepI ribonucleoside t 98.3 2.8E-06 6E-11 69.3 8.5 72 4-77 111-182 (394)
33 PRK11663 regulatory protein Uh 98.3 2.5E-06 5.5E-11 70.2 8.3 60 23-84 359-418 (434)
34 KOG1330 Sugar transporter/spin 98.3 7.2E-08 1.6E-12 81.6 -1.0 85 2-87 122-206 (493)
35 TIGR00895 2A0115 benzoate tran 98.3 2.4E-07 5.1E-12 73.1 1.8 74 4-79 108-181 (398)
36 PRK12382 putative transporter; 98.3 3.8E-06 8.3E-11 67.5 8.8 75 8-84 309-383 (392)
37 TIGR00893 2A0114 d-galactonate 98.3 3.4E-06 7.3E-11 65.8 8.2 68 18-86 328-395 (399)
38 TIGR00892 2A0113 monocarboxyla 98.3 3.4E-06 7.4E-11 70.2 7.9 68 12-82 119-186 (455)
39 PRK11273 glpT sn-glycerol-3-ph 98.3 1.1E-05 2.4E-10 66.7 10.8 76 5-81 124-199 (452)
40 TIGR00903 2A0129 major facilit 98.3 4.8E-06 1E-10 67.9 8.4 72 8-82 86-157 (368)
41 PRK10504 putative transporter; 98.3 4E-06 8.6E-11 69.1 7.9 75 6-82 103-177 (471)
42 PRK09874 drug efflux system pr 98.2 6.9E-06 1.5E-10 65.8 8.8 75 9-85 319-393 (408)
43 KOG2532 Permease of the major 98.2 1.7E-06 3.8E-11 73.3 5.5 80 4-85 131-211 (466)
44 PRK15403 multidrug efflux syst 98.2 8.7E-06 1.9E-10 66.8 9.4 75 6-82 109-183 (413)
45 TIGR00806 rfc RFC reduced fola 98.2 7.4E-06 1.6E-10 70.2 8.9 90 4-97 118-207 (511)
46 TIGR00890 2A0111 Oxalate/Forma 98.2 3.9E-06 8.6E-11 65.5 6.6 70 11-82 305-374 (377)
47 PRK10091 MFS transport protein 98.2 7.7E-06 1.7E-10 66.0 8.4 74 5-80 95-168 (382)
48 PRK11646 multidrug resistance 98.2 1.1E-05 2.4E-10 65.9 9.3 76 5-83 103-178 (400)
49 cd06174 MFS The Major Facilita 98.2 1.3E-05 2.9E-10 61.6 8.9 77 4-82 90-166 (352)
50 TIGR00883 2A0106 metabolite-pr 98.2 3.9E-06 8.4E-11 65.9 5.9 71 6-76 317-387 (394)
51 TIGR00879 SP MFS transporter, 98.2 2.4E-06 5.3E-11 68.5 4.7 72 4-77 130-204 (481)
52 PRK09874 drug efflux system pr 98.2 1.8E-05 3.9E-10 63.4 9.6 62 19-82 124-185 (408)
53 PRK11551 putative 3-hydroxyphe 98.2 8.2E-06 1.8E-10 65.7 7.6 72 4-77 106-177 (406)
54 TIGR00891 2A0112 putative sial 98.2 9.4E-06 2E-10 64.3 7.8 70 5-75 104-174 (405)
55 PRK09528 lacY galactoside perm 98.2 7.6E-06 1.7E-10 66.7 7.4 61 20-82 334-395 (420)
56 PRK15462 dipeptide/tripeptide 98.1 1.3E-05 2.9E-10 68.4 9.1 66 19-86 118-185 (493)
57 PRK11551 putative 3-hydroxyphe 98.1 1.4E-05 3.1E-10 64.3 8.8 68 10-78 317-384 (406)
58 PRK10473 multidrug efflux syst 98.1 1.7E-05 3.6E-10 63.8 9.1 72 9-82 99-170 (392)
59 PRK10489 enterobactin exporter 98.1 1.2E-05 2.6E-10 65.4 8.1 69 10-80 119-187 (417)
60 PRK10642 proline/glycine betai 98.1 2.5E-05 5.4E-10 65.4 9.9 58 18-76 359-416 (490)
61 cd06174 MFS The Major Facilita 98.1 1.1E-05 2.4E-10 62.1 7.2 80 4-85 268-347 (352)
62 PRK03545 putative arabinose tr 98.1 3.1E-05 6.8E-10 62.4 10.1 63 20-85 313-375 (390)
63 PRK11010 ampG muropeptide tran 98.1 3.9E-05 8.4E-10 64.7 10.9 68 15-84 330-397 (491)
64 PRK03893 putative sialic acid 98.1 1.1E-05 2.5E-10 66.6 7.4 70 4-75 111-180 (496)
65 TIGR01272 gluP glucose/galacto 98.1 2.4E-05 5.1E-10 62.4 8.9 76 2-78 11-101 (310)
66 PF11700 ATG22: Vacuole efflux 98.1 2.7E-05 5.8E-10 66.2 9.6 83 3-86 382-464 (477)
67 TIGR00879 SP MFS transporter, 98.1 6.1E-06 1.3E-10 66.2 5.4 64 20-85 402-465 (481)
68 PRK11902 ampG muropeptide tran 98.1 2.5E-05 5.5E-10 63.4 8.9 74 5-80 98-172 (402)
69 PRK12307 putative sialic acid 98.1 1.5E-05 3.3E-10 64.5 7.5 70 4-75 109-178 (426)
70 PRK06814 acylglycerophosphoeth 98.1 1.5E-05 3.3E-10 72.7 8.2 70 3-74 110-179 (1140)
71 PRK11010 ampG muropeptide tran 98.1 2.6E-05 5.6E-10 65.8 8.9 75 4-80 110-185 (491)
72 TIGR00890 2A0111 Oxalate/Forma 98.0 2.9E-05 6.4E-10 60.5 8.6 75 5-82 95-169 (377)
73 KOG2533 Permease of the major 98.0 2.8E-06 6E-11 72.6 2.9 82 2-85 135-222 (495)
74 TIGR00805 oat sodium-independe 98.0 1.7E-05 3.7E-10 69.4 7.5 61 4-65 175-235 (633)
75 PRK09556 uhpT sugar phosphate 98.0 8.7E-06 1.9E-10 67.6 4.8 77 3-80 124-202 (467)
76 TIGR00891 2A0112 putative sial 98.0 1.7E-05 3.7E-10 62.9 6.2 64 11-75 338-401 (405)
77 TIGR00712 glpT glycerol-3-phos 98.0 2.7E-05 6E-10 64.0 7.5 60 24-84 368-427 (438)
78 TIGR00901 2A0125 AmpG-related 98.0 5E-05 1.1E-09 60.2 8.7 70 10-80 92-168 (356)
79 PRK11043 putative transporter; 98.0 3.9E-05 8.4E-10 61.9 8.1 62 18-81 111-172 (401)
80 PRK15011 sugar efflux transpor 97.9 8.3E-05 1.8E-09 60.3 9.7 61 20-83 324-384 (393)
81 COG2271 UhpC Sugar phosphate p 97.9 5.8E-06 1.3E-10 69.6 2.9 85 2-87 347-431 (448)
82 PRK05122 major facilitator sup 97.9 3.5E-05 7.6E-10 62.0 7.4 66 9-76 120-185 (399)
83 PRK11646 multidrug resistance 97.9 3.4E-05 7.4E-10 63.0 7.1 49 17-66 313-361 (400)
84 PRK11652 emrD multidrug resist 97.9 6.2E-05 1.3E-09 60.5 8.5 69 9-79 104-172 (394)
85 PRK09705 cynX putative cyanate 97.9 0.0001 2.2E-09 59.9 9.9 72 3-76 99-170 (393)
86 TIGR00881 2A0104 phosphoglycer 97.9 2.3E-05 4.9E-10 61.2 5.7 60 11-72 320-379 (379)
87 PRK12382 putative transporter; 97.9 5.7E-05 1.2E-09 60.7 8.0 62 11-74 122-183 (392)
88 PRK15011 sugar efflux transpor 97.9 0.00013 2.7E-09 59.2 10.0 61 20-82 124-186 (393)
89 PRK09952 shikimate transporter 97.9 7.4E-05 1.6E-09 61.7 8.8 72 12-83 354-426 (438)
90 PRK15402 multidrug efflux syst 97.9 6.5E-05 1.4E-09 60.8 8.2 71 9-81 109-179 (406)
91 TIGR00887 2A0109 phosphate:H+ 97.9 0.00011 2.4E-09 61.7 9.8 59 3-62 117-175 (502)
92 PRK10054 putative transporter; 97.9 7.9E-05 1.7E-09 60.8 8.5 61 19-82 114-174 (395)
93 TIGR00886 2A0108 nitrite extru 97.9 7.2E-05 1.6E-09 58.9 8.0 55 18-74 107-171 (366)
94 PRK03699 putative transporter; 97.9 9.6E-05 2.1E-09 59.8 8.9 74 4-79 98-172 (394)
95 PRK09705 cynX putative cyanate 97.9 7.2E-05 1.6E-09 60.8 8.1 66 16-82 307-373 (393)
96 TIGR00899 2A0120 sugar efflux 97.9 0.0001 2.2E-09 58.2 8.7 72 11-85 298-369 (375)
97 PRK11128 putative 3-phenylprop 97.9 4.3E-05 9.4E-10 61.6 6.7 66 8-77 101-166 (382)
98 PRK10642 proline/glycine betai 97.9 0.00013 2.9E-09 61.0 9.7 71 4-76 121-199 (490)
99 TIGR00899 2A0120 sugar efflux 97.8 0.00013 2.8E-09 57.5 9.0 64 17-82 103-168 (375)
100 PRK15075 citrate-proton sympor 97.8 9.5E-05 2.1E-09 60.8 8.4 55 14-69 344-398 (434)
101 KOG3762 Predicted transporter 97.8 0.00015 3.3E-09 62.9 9.3 87 6-93 464-550 (618)
102 PLN00028 nitrate transmembrane 97.8 1.7E-05 3.7E-10 66.4 3.5 63 21-89 368-432 (476)
103 KOG2504 Monocarboxylate transp 97.8 2.5E-05 5.5E-10 66.9 4.6 68 22-90 409-476 (509)
104 TIGR02718 sider_RhtX_FptX side 97.8 0.00019 4.2E-09 57.8 9.3 68 13-82 315-383 (390)
105 PF03209 PUCC: PUCC protein; 97.8 0.00024 5.1E-09 59.5 9.6 62 4-66 92-153 (403)
106 TIGR01299 synapt_SV2 synaptic 97.8 0.00013 2.8E-09 65.3 8.6 73 7-82 654-726 (742)
107 TIGR00883 2A0106 metabolite-pr 97.8 0.00011 2.3E-09 57.7 7.2 67 9-77 104-178 (394)
108 PRK10077 xylE D-xylose transpo 97.8 0.00013 2.7E-09 60.0 7.9 71 9-81 128-206 (479)
109 TIGR00885 fucP L-fucose:H+ sym 97.7 0.00017 3.8E-09 59.4 8.6 75 4-80 97-197 (410)
110 PRK12307 putative sialic acid 97.7 9.9E-05 2.2E-09 59.7 7.0 53 21-75 341-393 (426)
111 PRK15075 citrate-proton sympor 97.7 0.00018 3.9E-09 59.1 8.4 67 7-75 123-197 (434)
112 TIGR00894 2A0114euk Na(+)-depe 97.7 6.2E-05 1.3E-09 62.1 5.7 79 5-85 365-445 (465)
113 PRK03633 putative MFS family t 97.7 0.00018 3.9E-09 57.9 8.2 61 16-78 300-360 (381)
114 PRK10504 putative transporter; 97.7 0.00035 7.6E-09 57.6 9.9 56 10-66 362-417 (471)
115 PLN00028 nitrate transmembrane 97.7 0.00038 8.3E-09 58.3 10.2 70 9-81 132-210 (476)
116 TIGR00897 2A0118 polyol permea 97.7 0.00044 9.6E-09 56.2 10.0 61 20-83 334-394 (402)
117 PRK10077 xylE D-xylose transpo 97.7 0.00014 3E-09 59.8 7.1 61 20-82 383-449 (479)
118 PRK10406 alpha-ketoglutarate t 97.7 0.00032 6.9E-09 57.6 9.2 72 4-77 127-206 (432)
119 PRK11195 lysophospholipid tran 97.7 0.00022 4.8E-09 58.1 8.2 66 8-76 95-160 (393)
120 PRK08633 2-acyl-glycerophospho 97.7 0.0002 4.3E-09 65.1 8.5 61 3-64 105-165 (1146)
121 KOG2615 Permease of the major 97.7 3.7E-05 8E-10 64.4 3.5 55 17-72 136-193 (451)
122 TIGR00897 2A0118 polyol permea 97.7 0.00012 2.6E-09 59.5 6.5 53 21-75 125-178 (402)
123 TIGR00900 2A0121 H+ Antiporter 97.7 8.1E-05 1.8E-09 57.9 5.2 62 4-66 304-365 (365)
124 TIGR00902 2A0127 phenyl propri 97.7 0.00011 2.3E-09 59.4 6.0 62 11-76 104-165 (382)
125 TIGR02332 HpaX 4-hydroxyphenyl 97.6 5.6E-05 1.2E-09 62.0 4.2 53 24-77 356-408 (412)
126 PRK10406 alpha-ketoglutarate t 97.6 0.00042 9.1E-09 56.9 9.1 63 19-82 354-416 (432)
127 PRK09952 shikimate transporter 97.6 0.00048 1E-08 56.9 9.4 70 6-77 130-207 (438)
128 TIGR00792 gph sugar (Glycoside 97.6 0.00024 5.2E-09 57.6 7.4 61 5-66 315-382 (437)
129 TIGR01301 GPH_sucrose GPH fami 97.6 0.00032 7E-09 59.8 8.0 93 5-101 118-226 (477)
130 TIGR00898 2A0119 cation transp 97.6 0.00036 7.8E-09 58.0 8.0 74 3-81 182-255 (505)
131 TIGR01299 synapt_SV2 synaptic 97.5 0.00039 8.4E-09 62.2 8.4 77 3-80 257-345 (742)
132 TIGR00903 2A0129 major facilit 97.5 0.00031 6.7E-09 57.3 7.2 78 4-85 283-360 (368)
133 PRK03699 putative transporter; 97.5 0.00082 1.8E-08 54.4 9.5 71 12-85 305-375 (394)
134 KOG0255 Synaptic vesicle trans 97.5 0.00024 5.2E-09 59.7 6.6 79 2-85 172-250 (521)
135 TIGR00902 2A0127 phenyl propri 97.5 0.00067 1.4E-08 54.8 8.8 72 7-81 299-370 (382)
136 TIGR00788 fbt folate/biopterin 97.5 0.00027 5.9E-09 59.4 6.4 57 9-66 359-415 (468)
137 PF03825 Nuc_H_symport: Nucleo 97.5 0.0011 2.4E-08 55.1 9.9 56 18-74 318-373 (400)
138 PRK06814 acylglycerophosphoeth 97.5 0.0005 1.1E-08 62.9 8.5 73 5-78 338-410 (1140)
139 PF05977 MFS_3: Transmembrane 97.5 0.00072 1.6E-08 58.2 8.8 77 3-81 105-181 (524)
140 TIGR00896 CynX cyanate transpo 97.5 0.00098 2.1E-08 52.8 8.9 67 9-77 95-162 (355)
141 PTZ00207 hypothetical protein; 97.5 0.00053 1.1E-08 60.0 7.8 75 5-84 124-199 (591)
142 KOG3764 Vesicular amine transp 97.4 0.00035 7.6E-09 58.9 5.8 74 10-85 168-242 (464)
143 PRK11902 ampG muropeptide tran 97.4 0.0024 5.3E-08 51.8 10.7 67 14-82 316-382 (402)
144 PRK11195 lysophospholipid tran 97.4 0.0017 3.7E-08 52.9 9.5 75 5-82 297-372 (393)
145 TIGR00898 2A0119 cation transp 97.4 0.00073 1.6E-08 56.2 7.4 73 6-82 415-487 (505)
146 TIGR02718 sider_RhtX_FptX side 97.4 0.0019 4.1E-08 52.0 9.5 64 16-81 112-175 (390)
147 TIGR00924 yjdL_sub1_fam amino 97.3 0.0014 3.1E-08 55.1 9.0 79 7-87 387-465 (475)
148 PRK10091 MFS transport protein 97.3 0.0029 6.3E-08 51.0 10.0 54 26-82 315-368 (382)
149 PRK10054 putative transporter; 97.3 0.0018 3.8E-08 52.8 8.6 53 20-75 317-369 (395)
150 TIGR00887 2A0109 phosphate:H+ 97.2 0.00087 1.9E-08 56.2 6.3 46 19-65 410-455 (502)
151 PRK10429 melibiose:sodium symp 97.2 0.0017 3.7E-08 54.2 8.0 57 9-66 332-395 (473)
152 PRK10213 nepI ribonucleoside t 97.2 0.0037 8E-08 51.0 9.6 70 10-82 314-383 (394)
153 PRK15402 multidrug efflux syst 97.2 0.0034 7.4E-08 50.7 9.0 48 20-69 328-375 (406)
154 TIGR01272 gluP glucose/galacto 97.1 0.0031 6.8E-08 50.2 8.6 65 7-75 236-300 (310)
155 PF06609 TRI12: Fungal trichot 97.1 0.0023 4.9E-08 56.2 8.0 75 5-82 135-209 (599)
156 PRK15034 nitrate/nitrite trans 97.1 0.0043 9.3E-08 52.8 9.0 78 3-83 130-225 (462)
157 PRK11128 putative 3-phenylprop 97.0 0.0041 8.9E-08 50.1 8.5 65 9-76 301-365 (382)
158 PF00854 PTR2: POT family; In 97.0 0.0022 4.7E-08 52.0 6.8 84 3-88 35-121 (372)
159 TIGR00882 2A0105 oligosacchari 97.0 0.0026 5.6E-08 51.3 7.0 57 25-83 331-388 (396)
160 PRK09848 glucuronide transport 97.0 0.003 6.5E-08 52.0 7.5 59 7-66 325-390 (448)
161 TIGR00792 gph sugar (Glycoside 96.9 0.0035 7.6E-08 50.8 7.0 65 14-80 112-184 (437)
162 PRK10207 dipeptide/tripeptide 96.9 0.0084 1.8E-07 50.8 9.1 83 6-89 384-475 (489)
163 KOG2504 Monocarboxylate transp 96.8 0.0044 9.6E-08 53.2 7.4 68 9-79 143-210 (509)
164 PRK10133 L-fucose transporter; 96.8 0.0077 1.7E-07 50.1 8.4 58 4-62 120-177 (438)
165 COG0738 FucP Fucose permease [ 96.8 0.0049 1.1E-07 51.9 7.0 69 4-76 327-395 (422)
166 COG2814 AraJ Arabinose efflux 96.7 0.018 3.9E-07 48.3 10.0 66 20-87 316-383 (394)
167 PRK11043 putative transporter; 96.7 0.017 3.6E-07 46.6 9.5 47 18-66 313-359 (401)
168 TIGR00895 2A0115 benzoate tran 96.7 0.0025 5.3E-08 50.1 4.3 56 5-61 342-397 (398)
169 PRK15034 nitrate/nitrite trans 96.7 0.017 3.6E-07 49.3 9.5 90 3-96 347-457 (462)
170 PRK03633 putative MFS family t 96.7 0.0076 1.6E-07 48.5 7.2 60 5-65 98-157 (381)
171 PRK08633 2-acyl-glycerophospho 96.7 0.015 3.3E-07 53.0 9.8 71 5-77 326-397 (1146)
172 KOG4686 Predicted sugar transp 96.6 0.0049 1.1E-07 50.7 5.8 45 22-67 373-417 (459)
173 TIGR00885 fucP L-fucose:H+ sym 96.4 0.023 4.9E-07 46.9 8.8 69 4-75 324-397 (410)
174 PRK09528 lacY galactoside perm 96.4 0.0068 1.5E-07 49.3 5.5 44 33-79 137-180 (420)
175 PRK09584 tppB putative tripept 96.4 0.031 6.7E-07 47.4 9.3 75 8-87 389-476 (500)
176 PRK10133 L-fucose transporter; 96.3 0.032 6.8E-07 46.4 8.7 67 6-75 352-418 (438)
177 COG2270 Permeases of the major 96.3 0.0096 2.1E-07 50.4 5.5 76 9-85 349-424 (438)
178 PRK09669 putative symporter Ya 96.2 0.025 5.4E-07 46.6 8.0 61 5-66 323-390 (444)
179 COG3104 PTR2 Dipeptide/tripept 96.1 0.0047 1E-07 53.1 3.2 73 16-90 132-206 (498)
180 TIGR00788 fbt folate/biopterin 96.1 0.011 2.5E-07 49.6 5.4 76 5-82 124-201 (468)
181 PF01306 LacY_symp: LacY proto 95.9 0.06 1.3E-06 45.4 8.7 75 20-98 331-405 (412)
182 TIGR00882 2A0105 oligosacchari 95.9 0.016 3.4E-07 46.8 5.0 45 35-82 131-175 (396)
183 TIGR00926 2A1704 Peptide:H+ sy 95.7 0.06 1.3E-06 47.7 8.4 85 4-90 88-182 (654)
184 TIGR00711 efflux_EmrB drug res 95.7 0.025 5.3E-07 46.4 5.4 59 7-66 354-412 (485)
185 COG2223 NarK Nitrate/nitrite t 95.6 0.092 2E-06 44.4 8.5 90 3-97 316-405 (417)
186 PF06609 TRI12: Fungal trichot 95.5 0.054 1.2E-06 47.7 7.3 57 5-62 409-465 (599)
187 KOG2532 Permease of the major 95.5 0.016 3.4E-07 49.4 3.8 83 3-87 360-444 (466)
188 PRK11462 putative transporter; 95.4 0.12 2.6E-06 43.3 8.8 55 11-66 328-389 (460)
189 PRK14995 methyl viologen resis 95.3 0.037 7.9E-07 46.5 5.5 59 5-64 355-413 (495)
190 PRK10473 multidrug efflux syst 95.2 0.17 3.6E-06 40.6 8.8 41 24-70 313-354 (392)
191 COG2807 CynX Cyanate permease 95.1 0.078 1.7E-06 44.4 6.5 60 16-76 311-371 (395)
192 PRK09669 putative symporter Ya 95.1 0.19 4.1E-06 41.4 8.8 64 12-76 120-190 (444)
193 TIGR00710 efflux_Bcr_CflA drug 95.1 0.16 3.5E-06 39.9 8.1 53 19-74 318-370 (385)
194 PF00083 Sugar_tr: Sugar (and 95.0 0.00037 8E-09 56.9 -7.3 72 6-79 107-181 (451)
195 TIGR00896 CynX cyanate transpo 94.9 0.038 8.2E-07 43.7 4.2 57 12-69 296-353 (355)
196 PRK15462 dipeptide/tripeptide 94.9 0.17 3.6E-06 43.5 8.3 40 20-63 396-435 (493)
197 KOG0252 Inorganic phosphate tr 94.8 0.012 2.5E-07 50.7 1.0 79 5-85 409-493 (538)
198 PF13347 MFS_2: MFS/sugar tran 94.8 0.096 2.1E-06 42.9 6.3 71 5-76 107-184 (428)
199 KOG2816 Predicted transporter 94.8 0.05 1.1E-06 46.4 4.8 59 18-78 129-187 (463)
200 PF03092 BT1: BT1 family; Int 94.7 0.23 5E-06 41.5 8.6 56 10-66 327-382 (433)
201 COG0738 FucP Fucose permease [ 94.6 0.23 5E-06 42.0 8.3 61 3-64 106-166 (422)
202 PRK11652 emrD multidrug resist 94.6 0.32 7E-06 39.0 8.9 51 12-64 310-360 (394)
203 KOG0569 Permease of the major 94.5 0.081 1.8E-06 45.5 5.5 68 9-77 124-192 (485)
204 KOG3764 Vesicular amine transp 94.5 0.14 3E-06 43.5 6.6 70 16-87 379-451 (464)
205 PF07690 MFS_1: Major Facilita 94.3 0.053 1.2E-06 41.9 3.6 50 5-55 303-352 (352)
206 KOG3626 Organic anion transpor 94.2 0.15 3.2E-06 46.0 6.6 60 4-64 236-299 (735)
207 COG2223 NarK Nitrate/nitrite t 94.0 0.13 2.8E-06 43.5 5.5 69 16-86 119-189 (417)
208 PRK11462 putative transporter; 94.0 0.56 1.2E-05 39.3 9.4 55 10-65 118-173 (460)
209 PF03137 OATP: Organic Anion T 93.9 0.0088 1.9E-07 51.7 -1.6 60 4-64 140-203 (539)
210 COG2807 CynX Cyanate permease 93.7 0.71 1.5E-05 38.8 9.2 59 22-82 120-178 (395)
211 PRK14778 lipoprotein signal pe 93.7 0.089 1.9E-06 39.9 3.6 71 49-119 87-166 (186)
212 PF13347 MFS_2: MFS/sugar tran 93.4 0.52 1.1E-05 38.6 8.1 64 2-66 316-386 (428)
213 KOG2533 Permease of the major 93.3 0.12 2.7E-06 44.4 4.4 45 33-78 400-444 (495)
214 PRK10429 melibiose:sodium symp 93.2 0.73 1.6E-05 38.5 8.7 53 10-63 115-168 (473)
215 PF03092 BT1: BT1 family; Int 93.0 0.4 8.7E-06 40.1 6.9 73 4-78 89-163 (433)
216 PTZ00207 hypothetical protein; 92.9 0.24 5.3E-06 43.5 5.6 80 6-87 457-549 (591)
217 KOG0254 Predicted transporter 92.5 0.43 9.2E-06 40.4 6.4 64 10-76 151-216 (513)
218 COG0477 ProP Permeases of the 91.9 1.6 3.4E-05 31.6 8.1 64 11-75 104-170 (338)
219 COG2211 MelB Na+/melibiose sym 91.8 0.74 1.6E-05 39.5 7.2 63 3-66 329-398 (467)
220 KOG2325 Predicted transporter/ 91.7 0.44 9.6E-06 41.1 5.7 33 24-57 152-184 (488)
221 PRK15403 multidrug efflux syst 91.6 2 4.3E-05 35.2 9.3 41 32-75 342-382 (413)
222 TIGR00769 AAA ADP/ATP carrier 91.5 2.1 4.6E-05 36.7 9.6 55 8-63 135-190 (472)
223 PRK11102 bicyclomycin/multidru 91.3 1.6 3.4E-05 34.5 8.2 37 22-59 308-344 (377)
224 PF12832 MFS_1_like: MFS_1 lik 90.7 3.1 6.7E-05 26.7 7.9 59 13-74 13-71 (77)
225 KOG0569 Permease of the major 90.6 2.4 5.1E-05 36.6 9.0 63 4-67 370-433 (485)
226 TIGR00901 2A0125 AmpG-related 90.5 0.7 1.5E-05 36.4 5.5 41 7-47 315-355 (356)
227 PF06813 Nodulin-like: Nodulin 89.9 0.81 1.8E-05 36.0 5.3 42 5-47 100-141 (250)
228 COG2211 MelB Na+/melibiose sym 89.8 2.5 5.4E-05 36.3 8.5 60 5-65 116-176 (467)
229 PF03209 PUCC: PUCC protein; 89.6 3.6 7.8E-05 34.8 9.1 63 2-65 302-364 (403)
230 TIGR01301 GPH_sucrose GPH fami 88.6 1.7 3.8E-05 37.2 6.8 81 4-85 383-466 (477)
231 TIGR00886 2A0108 nitrite extru 88.2 3 6.4E-05 32.6 7.5 35 38-74 38-72 (366)
232 PF06963 FPN1: Ferroportin1 (F 88.0 1.2 2.6E-05 37.8 5.4 35 50-85 161-195 (432)
233 PF03219 TLC: TLC ATP/ADP tran 87.1 7.1 0.00015 33.7 9.6 55 8-63 150-205 (491)
234 PF12273 RCR: Chitin synthesis 86.6 0.39 8.4E-06 33.9 1.4 7 69-75 1-7 (130)
235 PF15061 DUF4538: Domain of un 86.1 0.27 5.9E-06 30.5 0.3 36 68-103 5-41 (58)
236 KOG0254 Predicted transporter 84.5 6.2 0.00013 33.4 8.0 48 40-89 92-139 (513)
237 KOG0253 Synaptic vesicle trans 83.9 0.83 1.8E-05 39.1 2.4 52 6-58 439-490 (528)
238 PRK09848 glucuronide transport 83.9 11 0.00023 31.0 9.0 51 10-60 118-173 (448)
239 PF00939 Na_sulph_symp: Sodium 82.9 2.2 4.7E-05 36.0 4.6 45 52-96 195-243 (471)
240 PF03219 TLC: TLC ATP/ADP tran 82.5 18 0.0004 31.2 10.1 63 25-89 306-369 (491)
241 PRK14794 lipoprotein signal pe 82.1 1.9 4.2E-05 31.0 3.4 54 33-90 58-120 (136)
242 PF11118 DUF2627: Protein of u 81.8 3.7 8.1E-05 26.8 4.3 36 68-103 38-73 (77)
243 KOG2816 Predicted transporter 81.5 7.7 0.00017 33.2 7.4 53 15-68 344-396 (463)
244 KOG0255 Synaptic vesicle trans 81.4 6.9 0.00015 32.9 7.0 59 4-63 409-467 (521)
245 PRK14772 lipoprotein signal pe 80.6 2 4.4E-05 32.6 3.2 51 59-116 136-188 (190)
246 TIGR00769 AAA ADP/ATP carrier 79.9 21 0.00045 30.7 9.5 62 24-87 289-351 (472)
247 COG3104 PTR2 Dipeptide/tripept 79.8 7.1 0.00015 33.9 6.6 67 20-88 413-485 (498)
248 KOG2563 Permease of the major 79.6 9.7 0.00021 32.9 7.3 56 25-81 289-344 (480)
249 COG3088 CcmH Uncharacterized p 79.2 4.7 0.0001 29.7 4.6 32 54-85 80-121 (153)
250 KOG0253 Synaptic vesicle trans 79.2 7.3 0.00016 33.5 6.3 63 19-84 183-245 (528)
251 PRK14789 lipoprotein signal pe 78.9 2.1 4.5E-05 32.6 2.8 59 31-94 86-150 (191)
252 PRK03612 spermidine synthase; 78.3 22 0.00049 30.7 9.3 36 36-73 144-180 (521)
253 TIGR00847 ccoS cytochrome oxid 77.7 6.5 0.00014 23.7 4.2 35 74-109 7-41 (51)
254 PRK14774 lipoprotein signal pe 77.6 2.7 5.8E-05 31.8 3.1 73 49-125 99-184 (185)
255 TIGR00889 2A0110 nucleoside tr 77.2 25 0.00055 28.8 9.0 52 20-74 23-74 (418)
256 COG5336 Uncharacterized protei 76.2 14 0.0003 25.9 6.0 33 33-66 38-70 (116)
257 KOG3098 Uncharacterized conser 75.1 35 0.00075 29.4 9.5 44 3-47 355-398 (461)
258 PF00558 Vpu: Vpu protein; In 75.0 3.6 7.8E-05 27.2 2.8 19 75-93 12-30 (81)
259 PRK01637 hypothetical protein; 73.5 41 0.00089 26.6 9.0 48 25-72 189-236 (286)
260 PRK10263 DNA translocase FtsK; 73.2 70 0.0015 31.3 11.6 17 50-66 143-159 (1355)
261 PF03825 Nuc_H_symport: Nucleo 72.5 54 0.0012 27.2 9.9 37 36-73 36-72 (400)
262 PF01770 Folate_carrier: Reduc 71.9 41 0.00089 28.5 9.0 54 21-75 113-167 (412)
263 COG2056 Predicted permease [Ge 71.7 11 0.00023 31.9 5.4 49 54-105 167-225 (444)
264 PF00083 Sugar_tr: Sugar (and 71.4 0.2 4.4E-06 40.8 -4.8 44 22-66 370-413 (451)
265 TIGR03727 urea_t_UrtC_arc urea 71.2 56 0.0012 27.0 9.6 15 49-63 285-299 (364)
266 KOG2615 Permease of the major 71.1 6.6 0.00014 33.6 4.1 54 10-64 361-414 (451)
267 PF04971 Lysis_S: Lysis protei 70.0 5.7 0.00012 25.4 2.7 41 61-101 24-64 (68)
268 PRK14776 lipoprotein signal pe 70.0 5.5 0.00012 29.6 3.1 53 33-89 92-153 (170)
269 PF15048 OSTbeta: Organic solu 69.7 6.8 0.00015 27.9 3.3 12 68-79 35-46 (125)
270 PF11700 ATG22: Vacuole efflux 69.3 47 0.001 28.4 9.0 33 3-35 128-160 (477)
271 KOG4026 Uncharacterized conser 69.3 27 0.00058 27.0 6.7 40 34-76 112-166 (207)
272 PRK14780 lipoprotein signal pe 68.7 1.6 3.5E-05 34.8 0.0 23 59-82 187-210 (263)
273 TIGR00880 2_A_01_02 Multidrug 68.0 11 0.00023 24.4 4.0 13 54-66 14-26 (141)
274 KOG4112 Signal peptidase subun 68.0 20 0.00043 24.5 5.1 40 56-98 40-79 (101)
275 PRK14764 lipoprotein signal pe 68.0 7.1 0.00015 30.2 3.4 29 59-88 150-180 (209)
276 KOG0252 Inorganic phosphate tr 67.8 20 0.00043 31.4 6.4 62 20-83 61-128 (538)
277 PF02487 CLN3: CLN3 protein; 66.9 12 0.00025 31.7 4.8 45 2-46 336-380 (402)
278 PF13000 Acatn: Acetyl-coenzym 66.4 35 0.00076 30.0 7.6 55 10-65 414-468 (544)
279 KOG2563 Permease of the major 64.7 35 0.00077 29.6 7.2 65 20-89 65-129 (480)
280 PF07857 DUF1632: CEO family ( 63.6 8.7 0.00019 30.5 3.2 12 55-66 92-103 (254)
281 PRK12489 anaerobic C4-dicarbox 62.6 1E+02 0.0022 26.5 10.0 27 34-60 128-154 (443)
282 TIGR02840 spore_YtaF putative 62.2 35 0.00076 25.9 6.3 31 33-63 30-60 (206)
283 PF02487 CLN3: CLN3 protein; 61.7 46 0.00099 28.1 7.4 65 6-77 117-182 (402)
284 PF03597 CcoS: Cytochrome oxid 60.6 27 0.00058 20.4 4.2 35 74-109 6-40 (45)
285 TIGR01478 STEVOR variant surfa 59.4 43 0.00092 27.2 6.5 16 84-99 274-289 (295)
286 TIGR00939 2a57 Equilibrative N 58.6 20 0.00043 30.3 4.7 26 6-32 111-136 (437)
287 PF15176 LRR19-TM: Leucine-ric 58.2 43 0.00093 23.0 5.4 24 68-91 15-40 (102)
288 PRK09412 anaerobic C4-dicarbox 57.1 1.2E+02 0.0026 25.7 11.0 28 33-60 127-154 (433)
289 PRK14796 lipoprotein signal pe 56.8 11 0.00025 27.6 2.7 54 34-91 90-152 (161)
290 PF12606 RELT: Tumour necrosis 55.5 30 0.00065 20.7 3.9 6 94-99 25-30 (50)
291 PRK04125 murein hydrolase regu 55.2 53 0.0011 23.8 5.9 17 49-66 69-85 (141)
292 PRK12660 putative monovalent c 55.0 47 0.001 23.0 5.4 10 68-77 69-78 (114)
293 COG1295 Rbn Ribonuclease BN fa 54.4 1.1E+02 0.0024 24.5 10.1 56 21-76 202-258 (303)
294 PF04226 Transgly_assoc: Trans 54.2 29 0.00064 20.3 3.7 15 52-66 5-19 (48)
295 PF06645 SPC12: Microsomal sig 53.5 44 0.00095 21.5 4.7 43 52-97 21-63 (76)
296 COG3202 ATP/ADP translocase [E 52.9 1.6E+02 0.0035 25.9 9.7 69 24-93 307-376 (509)
297 PRK13499 rhamnose-proton sympo 52.6 42 0.00092 27.8 5.6 6 52-57 116-121 (345)
298 KOG1237 H+/oligopeptide sympor 52.3 11 0.00023 33.2 2.2 47 18-65 475-521 (571)
299 PF11712 Vma12: Endoplasmic re 52.1 33 0.00072 24.4 4.4 12 52-63 89-101 (142)
300 PRK14775 lipoprotein signal pe 51.6 21 0.00045 26.6 3.3 43 49-91 97-148 (170)
301 PRK11469 hypothetical protein; 48.9 98 0.0021 23.2 6.7 26 36-61 40-65 (188)
302 TIGR00806 rfc RFC reduced fola 48.4 1.7E+02 0.0036 25.7 8.8 35 35-75 64-98 (511)
303 PRK14767 lipoprotein signal pe 48.3 37 0.00081 25.3 4.3 43 49-92 105-155 (174)
304 PTZ00370 STEVOR; Provisional 48.3 38 0.00082 27.5 4.6 24 82-105 268-291 (296)
305 PF05884 ZYG-11_interact: Inte 47.8 86 0.0019 25.6 6.5 16 22-37 84-99 (299)
306 PF07854 DUF1646: Protein of u 47.8 85 0.0018 26.1 6.5 41 50-93 161-201 (347)
307 PF01306 LacY_symp: LacY proto 47.5 51 0.0011 27.9 5.4 33 33-66 39-71 (412)
308 PF11755 DUF3311: Protein of u 47.5 54 0.0012 20.4 4.3 23 68-90 28-50 (66)
309 PF12270 Cyt_c_ox_IV: Cytochro 46.8 35 0.00076 24.7 3.8 14 111-124 67-80 (137)
310 PF06679 DUF1180: Protein of u 46.8 47 0.001 24.7 4.6 15 68-82 94-108 (163)
311 PF03918 CcmH: Cytochrome C bi 46.1 13 0.00028 27.1 1.5 31 55-85 77-117 (148)
312 COG2270 Permeases of the major 45.8 1.2E+02 0.0025 26.2 7.3 37 34-72 285-321 (438)
313 KOG3058 Uncharacterized conser 45.6 77 0.0017 26.5 6.0 24 9-32 72-95 (351)
314 PRK13955 mscL large-conductanc 45.4 52 0.0011 23.5 4.5 18 78-95 76-93 (130)
315 PRK14795 lipoprotein signal pe 45.3 31 0.00067 25.3 3.4 56 31-90 85-149 (158)
316 TIGR00785 dass anion transport 44.0 1.5E+02 0.0032 24.6 7.7 15 50-64 173-187 (444)
317 PRK00567 mscL large-conductanc 44.0 85 0.0019 22.5 5.4 18 78-95 83-100 (134)
318 PF13748 ABC_membrane_3: ABC t 43.6 37 0.00081 26.7 3.8 24 98-121 169-192 (237)
319 COG1971 Predicted membrane pro 43.6 82 0.0018 24.0 5.5 9 34-42 34-42 (190)
320 PF07760 DUF1616: Protein of u 43.5 78 0.0017 25.1 5.7 46 18-66 35-81 (287)
321 PRK03427 cell division protein 43.1 45 0.00098 27.6 4.3 28 68-97 5-32 (333)
322 PF03547 Mem_trans: Membrane t 42.3 56 0.0012 26.3 4.9 7 31-37 90-96 (385)
323 KOG3827 Inward rectifier K+ ch 41.8 63 0.0014 27.4 5.0 35 59-93 48-87 (400)
324 PF10190 Tmemb_170: Putative t 41.6 1.2E+02 0.0025 21.0 8.4 30 31-64 35-64 (105)
325 KOG3574 Acetyl-CoA transporter 41.0 66 0.0014 27.9 5.1 55 10-65 378-432 (510)
326 PRK08600 putative monovalent c 40.8 55 0.0012 22.8 3.9 23 66-88 66-88 (113)
327 PF06963 FPN1: Ferroportin1 (F 40.4 49 0.0011 28.1 4.3 47 4-50 359-405 (432)
328 PF02447 GntP_permease: GntP f 40.2 2.4E+02 0.0052 24.2 9.7 42 20-61 122-166 (441)
329 TIGR00926 2A1704 Peptide:H+ sy 40.1 1.7E+02 0.0036 26.3 7.8 27 20-46 584-610 (654)
330 TIGR00770 Dcu anaerobic c4-dic 40.0 2.3E+02 0.0051 24.0 10.5 29 33-62 123-151 (430)
331 TIGR02230 ATPase_gene1 F0F1-AT 39.9 1.1E+02 0.0024 20.9 5.2 14 51-64 55-68 (100)
332 KOG3660 Sodium-neurotransmitte 39.8 1.6E+02 0.0034 26.5 7.5 96 4-106 388-490 (629)
333 PF04024 PspC: PspC domain; I 39.6 90 0.002 19.1 4.9 34 60-93 19-56 (61)
334 PRK10144 formate-dependent nit 39.1 91 0.002 22.2 4.9 30 54-83 76-115 (126)
335 TIGR03147 cyt_nit_nrfF cytochr 39.1 86 0.0019 22.3 4.8 29 55-83 77-115 (126)
336 COG1593 DctQ TRAP-type C4-dica 38.3 1.9E+02 0.0042 24.4 7.4 61 35-98 87-151 (379)
337 PF13955 Fst_toxin: Toxin Fst, 37.3 34 0.00073 16.9 1.7 15 52-66 4-18 (21)
338 PHA02706 hypothetical protein; 36.3 14 0.0003 22.2 0.3 23 87-109 29-52 (58)
339 PF00209 SNF: Sodium:neurotran 36.2 47 0.001 28.5 3.6 36 4-39 351-387 (523)
340 PF04277 OAD_gamma: Oxaloaceta 35.7 1.1E+02 0.0024 19.1 5.3 10 68-77 5-14 (79)
341 PRK09094 putative monovalent c 35.5 1E+02 0.0022 21.5 4.6 24 67-90 71-94 (114)
342 PF01940 DUF92: Integral membr 35.0 75 0.0016 24.7 4.3 24 52-75 23-46 (226)
343 PRK14770 lipoprotein signal pe 34.8 32 0.0007 25.4 2.1 42 49-90 106-156 (167)
344 COG3197 FixS Uncharacterized p 34.7 67 0.0014 19.9 3.1 33 75-108 8-40 (58)
345 KOG2601 Iron transporter [Inor 34.5 93 0.002 26.9 5.0 47 3-49 388-434 (503)
346 PF01733 Nucleoside_tran: Nucl 34.4 13 0.00029 29.5 0.0 25 8-33 4-28 (309)
347 PF02554 CstA: Carbon starvati 34.2 1.7E+02 0.0037 24.7 6.4 51 35-90 54-104 (376)
348 TIGR00220 mscL large conductan 34.1 1.1E+02 0.0024 21.8 4.7 17 78-94 78-94 (127)
349 PF11368 DUF3169: Protein of u 33.9 1.1E+02 0.0023 23.7 5.0 8 50-57 18-25 (248)
350 KOG4686 Predicted sugar transp 33.8 54 0.0012 27.5 3.4 38 28-66 163-200 (459)
351 PF03606 DcuC: C4-dicarboxylat 33.5 3E+02 0.0066 23.4 10.2 27 37-63 161-187 (465)
352 PF15471 TMEM171: Transmembran 33.1 35 0.00076 27.7 2.2 25 72-96 162-186 (319)
353 COG0004 AmtB Ammonia permease 32.8 72 0.0016 27.2 4.1 18 47-64 317-334 (409)
354 PRK14766 lipoprotein signal pe 32.5 19 0.00042 27.6 0.6 8 58-65 136-143 (201)
355 COG5058 LAG1 Protein transport 32.4 2.8E+02 0.006 23.3 7.3 51 4-60 243-293 (395)
356 PRK00376 lspA lipoprotein sign 32.3 27 0.00058 25.5 1.4 56 32-91 91-155 (160)
357 PRK09921 permease DsdX; Provis 32.3 3.2E+02 0.007 23.3 10.3 30 34-66 142-172 (445)
358 COG0733 Na+-dependent transpor 32.0 3.3E+02 0.0073 23.4 8.0 40 25-66 330-370 (439)
359 PF08229 SHR3_chaperone: ER me 32.0 26 0.00057 26.8 1.3 13 80-93 144-156 (196)
360 PF01252 Peptidase_A8: Signal 31.9 50 0.0011 23.6 2.7 54 34-92 82-145 (150)
361 TIGR02005 PTS-IIBC-alpha PTS s 31.7 1.5E+02 0.0033 26.0 6.1 10 41-50 347-356 (524)
362 PRK10654 dcuC C4-dicarboxylate 31.6 3.3E+02 0.0072 23.3 10.7 26 68-93 193-218 (455)
363 PRK14785 lipoprotein signal pe 31.4 29 0.00062 25.8 1.4 56 32-91 98-163 (171)
364 PRK15432 autoinducer 2 ABC tra 31.4 2.9E+02 0.0064 22.6 8.4 14 50-63 260-273 (344)
365 TIGR02978 phageshock_pspC phag 31.1 1.9E+02 0.0041 20.3 5.5 43 54-97 14-62 (121)
366 KOG3762 Predicted transporter 31.0 77 0.0017 28.4 4.1 27 45-72 54-80 (618)
367 PF15179 Myc_target_1: Myc tar 30.7 1.1E+02 0.0024 23.4 4.4 29 68-96 21-50 (197)
368 PRK14793 lipoprotein signal pe 30.7 43 0.00093 24.3 2.2 40 49-89 93-138 (150)
369 COG2610 GntT H+/gluconate symp 30.5 3.5E+02 0.0077 23.3 9.6 39 20-58 123-164 (442)
370 TIGR00784 citMHS citrate trans 30.5 1.3E+02 0.0028 25.2 5.3 9 49-57 152-160 (431)
371 PRK14779 lipoprotein signal pe 29.4 50 0.0011 24.1 2.3 47 49-95 99-154 (159)
372 COG1006 MnhC Multisubunit Na+/ 29.4 1.3E+02 0.0027 21.1 4.2 25 66-90 69-93 (115)
373 COG3238 Uncharacterized protei 29.3 43 0.00092 24.6 2.0 15 52-66 103-117 (150)
374 PRK10921 twin-arginine protein 28.5 2.9E+02 0.0064 21.7 6.8 8 68-75 193-200 (258)
375 PRK13954 mscL large-conductanc 28.5 2.1E+02 0.0046 20.1 6.3 17 78-94 73-89 (119)
376 PRK10697 DNA-binding transcrip 28.3 2E+02 0.0044 20.1 5.2 37 61-97 25-67 (118)
377 PF03773 DUF318: Predicted per 28.3 3.1E+02 0.0066 21.8 9.1 45 51-96 94-138 (307)
378 PF14362 DUF4407: Domain of un 28.2 2.5E+02 0.0054 22.2 6.4 12 92-103 105-116 (301)
379 PRK14768 lipoprotein signal pe 28.0 30 0.00064 25.0 0.9 42 49-90 92-140 (148)
380 TIGR03513 GldL_gliding gliding 28.0 1.4E+02 0.003 23.0 4.6 43 50-93 9-51 (202)
381 PF15050 SCIMP: SCIMP protein 27.9 92 0.002 22.2 3.3 8 68-75 4-11 (133)
382 PF04117 Mpv17_PMP22: Mpv17 / 27.6 1.3E+02 0.0029 18.2 3.8 33 15-47 27-59 (68)
383 PF11027 DUF2615: Protein of u 27.5 1.3E+02 0.0028 20.7 4.0 22 88-109 67-88 (103)
384 PF03988 DUF347: Repeat of Unk 27.5 1.4E+02 0.0031 17.7 4.8 21 51-72 11-31 (55)
385 PF13194 DUF4010: Domain of un 27.3 2.8E+02 0.0061 21.1 9.1 20 22-41 41-60 (211)
386 PRK04570 cell division protein 27.1 1.7E+02 0.0037 23.2 5.0 12 82-93 14-25 (243)
387 PF13000 Acatn: Acetyl-coenzym 27.0 2.2E+02 0.0047 25.3 6.1 34 29-63 146-179 (544)
388 PF09911 DUF2140: Uncharacteri 26.8 26 0.00056 26.4 0.4 9 68-76 3-11 (187)
389 TIGR03644 marine_trans_1 proba 26.6 1.4E+02 0.003 25.2 4.8 13 50-62 332-344 (404)
390 PRK10297 PTS system N,N'-diace 26.3 66 0.0014 27.6 2.9 22 53-75 392-413 (452)
391 PRK14792 lipoprotein signal pe 26.1 34 0.00074 25.1 1.0 39 49-88 101-147 (159)
392 TIGR00836 amt ammonium transpo 25.8 1.7E+02 0.0036 24.7 5.2 17 47-63 316-332 (403)
393 PF02404 SCF: Stem cell factor 25.8 23 0.0005 28.4 0.0 18 110-127 254-271 (273)
394 KOG2325 Predicted transporter/ 25.6 61 0.0013 28.2 2.5 60 20-81 407-466 (488)
395 PRK12586 putative monovalent c 25.5 2.7E+02 0.0058 20.3 7.5 11 5-15 13-23 (145)
396 PF14851 FAM176: FAM176 family 25.4 2.8E+02 0.006 20.4 5.9 6 59-64 13-18 (153)
397 TIGR00077 lspA lipoprotein sig 25.1 81 0.0018 23.2 2.8 43 49-91 106-157 (166)
398 PF14340 DUF4395: Domain of un 25.1 2.5E+02 0.0054 19.7 5.7 26 36-61 76-101 (131)
399 PF08566 Pam17: Mitochondrial 24.9 62 0.0014 24.3 2.2 25 37-61 78-102 (173)
400 PRK14797 lipoprotein signal pe 24.8 43 0.00093 24.2 1.3 53 32-89 81-141 (150)
401 KOG0637 Sucrose transporter an 24.7 1.1E+02 0.0024 26.8 3.9 56 3-59 144-200 (498)
402 PF14002 YniB: YniB-like prote 24.6 44 0.00095 24.9 1.3 40 68-107 73-113 (166)
403 KOG1237 H+/oligopeptide sympor 24.6 39 0.00084 29.8 1.2 44 49-93 205-248 (571)
404 PRK13743 conjugal transfer pro 24.5 2.1E+02 0.0046 20.6 4.7 12 68-79 82-93 (141)
405 PF06813 Nodulin-like: Nodulin 24.3 3.5E+02 0.0076 21.1 8.9 30 42-74 42-71 (250)
406 KOG1277 Endosomal membrane pro 24.2 1E+02 0.0022 27.1 3.5 41 68-108 226-268 (593)
407 PRK14790 lipoprotein signal pe 24.2 80 0.0017 23.4 2.7 39 49-88 106-150 (169)
408 PF08611 DUF1774: Fungal prote 24.1 2.4E+02 0.0052 19.2 6.8 7 68-74 50-56 (97)
409 PF04982 HPP: HPP family; Int 24.1 2.5E+02 0.0054 19.4 5.7 16 35-50 52-67 (120)
410 COG0597 LspA Lipoprotein signa 23.9 1.4E+02 0.0029 22.2 3.8 62 28-93 88-158 (167)
411 PF02285 COX8: Cytochrome oxid 23.7 1.3E+02 0.0029 17.5 3.0 10 59-68 31-40 (44)
412 COG4327 Predicted membrane pro 23.6 1.1E+02 0.0024 20.8 3.0 10 66-76 49-58 (101)
413 COG4854 Predicted membrane pro 23.6 26 0.00056 24.7 -0.0 23 92-114 46-68 (126)
414 PF01914 MarC: MarC family int 23.4 3.3E+02 0.0071 20.5 8.5 12 80-91 74-85 (203)
415 PRK14773 lipoprotein signal pe 23.4 73 0.0016 24.2 2.4 52 33-88 118-181 (192)
416 COG3366 Uncharacterized protei 23.3 4.2E+02 0.0092 21.8 9.6 13 20-32 68-80 (311)
417 COG3333 Uncharacterized protei 23.3 5.1E+02 0.011 22.7 8.9 38 37-74 418-457 (504)
418 PF10183 ESSS: ESSS subunit of 23.3 1.5E+02 0.0033 20.1 3.7 16 59-75 51-66 (105)
419 PRK01821 hypothetical protein; 23.2 2.8E+02 0.0062 19.7 5.9 16 49-65 71-86 (133)
420 PRK14777 lipoprotein signal pe 23.1 54 0.0012 24.6 1.6 30 33-66 107-140 (184)
421 COG3202 ATP/ADP translocase [E 23.1 5.3E+02 0.011 22.8 9.0 40 24-64 171-210 (509)
422 PRK14786 lipoprotein signal pe 23.0 1.1E+02 0.0023 22.3 3.1 52 32-88 81-140 (154)
423 COG2095 MarC Multiple antibiot 23.0 3.5E+02 0.0075 20.6 7.3 24 17-40 21-44 (203)
424 PF14316 DUF4381: Domain of un 23.0 1.1E+02 0.0023 21.7 3.1 10 92-101 44-53 (146)
425 PF06143 Baculo_11_kDa: Baculo 22.9 1.2E+02 0.0025 20.2 3.0 20 72-91 38-57 (84)
426 TIGR00939 2a57 Equilibrative N 22.7 1.1E+02 0.0024 25.9 3.5 31 25-56 396-426 (437)
427 PRK15049 L-asparagine permease 22.6 1.7E+02 0.0037 24.9 4.7 7 68-74 447-453 (499)
428 PRK10995 inner membrane protei 22.0 3.6E+02 0.0078 20.5 8.5 23 53-75 57-79 (221)
429 cd00930 Cyt_c_Oxidase_VIII Cyt 21.9 1E+02 0.0023 17.8 2.3 8 59-66 31-38 (43)
430 PF06027 DUF914: Eukaryotic pr 21.8 1E+02 0.0022 25.4 3.1 14 80-93 290-303 (334)
431 PHA03231 glycoprotein BALF4; P 21.7 1E+02 0.0022 28.7 3.3 8 52-59 688-695 (829)
432 COG1288 Predicted membrane pro 21.6 4.2E+02 0.0092 23.1 6.7 24 51-75 194-225 (481)
433 COG4177 LivM ABC-type branched 21.5 4.5E+02 0.0097 21.4 9.0 57 8-65 211-270 (314)
434 PF03817 MadL: Malonate transp 21.5 1.5E+02 0.0031 21.2 3.4 16 88-103 46-61 (125)
435 PF09726 Macoilin: Transmembra 21.4 5.5E+02 0.012 23.4 7.8 38 19-56 54-92 (697)
436 KOG4332 Predicted sugar transp 21.4 2.2E+02 0.0048 23.8 4.8 43 5-47 348-390 (454)
437 PF13829 DUF4191: Domain of un 21.3 1.7E+02 0.0036 22.9 4.0 12 52-63 35-46 (224)
438 PTZ00382 Variant-specific surf 21.3 46 0.00099 22.4 0.8 12 83-94 81-92 (96)
439 COG3086 RseC Positive regulato 21.1 3.4E+02 0.0074 19.9 5.3 22 52-74 86-107 (150)
440 PF10777 YlaC: Inner membrane 20.9 2.2E+02 0.0048 21.0 4.3 31 55-86 49-79 (155)
441 PRK11588 hypothetical protein; 20.4 5.9E+02 0.013 22.4 9.1 39 36-75 192-238 (506)
442 PRK13718 conjugal transfer pro 20.4 2.1E+02 0.0045 18.9 3.7 6 98-103 75-80 (84)
443 COG0786 GltS Na+/glutamate sym 20.1 5.5E+02 0.012 21.9 7.7 38 69-107 159-197 (404)
444 PF10577 UPF0560: Uncharacteri 20.0 1.6E+02 0.0034 27.4 4.1 12 63-75 266-277 (807)
No 1
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=3.4e-12 Score=112.33 Aligned_cols=93 Identities=28% Similarity=0.459 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh----------------
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV---------------- 65 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~---------------- 65 (132)
+.|+++++++.|+.+....|...+++|+||+++|+.|+|+..++.+++|.+|+|+++|+++|..
T Consensus 587 ~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~W~~~C~~~GsC~i 666 (735)
T KOG3626|consen 587 LIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLLWGKSCGSRGSCLI 666 (735)
T ss_pred HHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHHhhcccCCCCceee
Confidence 5789999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---hhHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 032830 66 ---NNWRETALILTAILFP-AAAIWFIGIFLHS 94 (132)
Q Consensus 66 ---g~~r~a~~~~~~~~iv-~~~~~~~~~~~~~ 94 (132)
..+|+.|..+.+.+.. +.+.+.+.++..|
T Consensus 667 Yd~~~lr~~y~gl~~~~~~~~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 667 YDNDSLRYRYLGLHIILKVIALILLIIDLYVWR 699 (735)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1299988776555533 4444444444333
No 2
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.14 E-value=8.1e-11 Score=98.35 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH--HHHHHhhhhHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV--GVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~--G~l~D~~g~~r~a~~~~~~~~ 79 (132)
+++.+++++.++++++.++|+..++.+++|+++||+..++++...| +|+++.|+++ |++.++.+ ||.+|++.+++.
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN-iGGal~~~~~~la~~~~~~~-w~~~f~~pgiia 195 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN-IGGALAPLVALLAFFAFHGG-WRAAFYFPGIIA 195 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh-cccchHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999977 5668888888 99999988 999999987555
Q ss_pred HHHH
Q 032830 80 FPAA 83 (132)
Q Consensus 80 iv~~ 83 (132)
++.+
T Consensus 196 iiva 199 (448)
T COG2271 196 IIVA 199 (448)
T ss_pred HHHH
Confidence 4433
No 3
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.12 E-value=1.7e-10 Score=100.45 Aligned_cols=91 Identities=26% Similarity=0.437 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh----h-----------
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV----N----------- 66 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~----g----------- 66 (132)
+.|++++++..++.+....|...+++|+||+++|+.|+|+..++.+++|.+|||+++|+++|+. +
T Consensus 519 ~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~ 598 (633)
T TIGR00805 519 LYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACR 598 (633)
T ss_pred HHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCcee
Confidence 4688888899999999999999999999999999999999999999999999999999999984 1
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 67 -----NWRETALILTAILFPAAAIWFIGIFL 92 (132)
Q Consensus 67 -----~~r~a~~~~~~~~iv~~~~~~~~~~~ 92 (132)
.+|+.+....+.+-+.++++.+.+|+
T Consensus 599 ~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 629 (633)
T TIGR00805 599 MYDNDNLRNIYLGLTIALRGSGLLLLFFILI 629 (633)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 28888888776665554544444443
No 4
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.90 E-value=2.9e-09 Score=88.50 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~ 89 (132)
+.++......+....++.+.+|++++++++|+++...+ +|..+||++.|++.|.+|+|++.|++.++..+++++...+.
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~ 420 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC-CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIG 420 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH-HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHH
Confidence 33444444456667888999999999999999999875 68899999999999998669999999877777766655544
Q ss_pred HH
Q 032830 90 IF 91 (132)
Q Consensus 90 ~~ 91 (132)
.+
T Consensus 421 ~~ 422 (455)
T TIGR00892 421 NY 422 (455)
T ss_pred HH
Confidence 44
No 5
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5e-09 Score=88.51 Aligned_cols=100 Identities=32% Similarity=0.378 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH----------HH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR----------ET 71 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r----------~a 71 (132)
+..++++.++.+.....+++++-+++.++||++|++|.++...+.+++|+..+|.|.|.++|+..+|+ -+
T Consensus 350 ~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s 429 (493)
T KOG1330|consen 350 IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTS 429 (493)
T ss_pred HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccch
Confidence 45677888888888899999999999999999999999999999999999999999999999974455 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 032830 72 ALILTAILFPAAAIWFIGIFLHSVDKFSED 101 (132)
Q Consensus 72 ~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 101 (132)
...+++.+..++..+....+....++|+..
T Consensus 430 ~~~~a~~l~~a~~~~~~~~f~v~~d~~~~~ 459 (493)
T KOG1330|consen 430 LRLCAALLAKALIWSIGSPFGVCCDRYSFL 459 (493)
T ss_pred hhhhHHHHHHHHHHhhccceeeeecccccc
Confidence 555555555555554444455555555433
No 6
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.72 E-value=2.7e-08 Score=77.56 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
.+++..++.+++.....+.....+.+++|+++|++++++.....+ +|..+||.+.|++.+..+ ||+.+.+.++..++
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG-LGGIIGGPLVGWILIHFS-WQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence 344555666666677777788899999999999999999998865 688999999999999999 99999887544433
No 7
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.67 E-value=1.6e-07 Score=77.26 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 80 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i 80 (132)
+..++.+++.+...++...++.+++|+++|++++++++...+ +|..++|++.|++.|.+| ||+.|.+.++..+
T Consensus 116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-w~~~f~~~~i~~~ 188 (434)
T PRK11663 116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHN-VGGALIPLVVGAIALHYG-WRYGMMIAGIIAI 188 (434)
T ss_pred HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-HHHHHHHHHHHHH
Confidence 334445666666677788899999999999999999998865 688999999999999999 9999988754433
No 8
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.62 E-value=5.8e-08 Score=75.45 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+++..++.+++.....+.....+.+++|+++|+++.++.....+ +|..+||.+.|++.|++| ||+.|++..+..+++
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS-LGSILGPLLGGFLISYFG-WRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhh-hhhhcccchhhhhhhccc-cccccccccchhhhh
Confidence 456666777777778888889999999999999999999999875 788999999999999989 999999886665555
Q ss_pred HH
Q 032830 83 AA 84 (132)
Q Consensus 83 ~~ 84 (132)
.+
T Consensus 165 ~i 166 (352)
T PF07690_consen 165 AI 166 (352)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.62 E-value=2e-07 Score=75.75 Aligned_cols=72 Identities=14% Similarity=-0.079 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
+++++.+++.....+...+.+++.+|++.|++++|++....+ +|..+||.+.|++.|.+| .+.++...+...
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~ 388 (417)
T PRK10489 317 LCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNV-TGDAIGAALLGGLGAMMT-PVASASASGFGL 388 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHhc-hhhHHHHHHHHH
Confidence 334444444444445556788999999999999999988764 788999999999999999 777777664433
No 10
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.57 E-value=2.1e-07 Score=76.94 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=47.2
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.+.....+++.+|+++|++++|++....+ +|..+||++.|++.|++| |++++....
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~lgp~l~g~l~~~~g-~~~~~~~~~ 439 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGA-LGGALAPILGALIAQRLD-LGTALASLS 439 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhh-HHHHHHHHHHHHHhccCC-hHHHHHHHH
Confidence 34455678899999999999999888765 677899999999999999 998886554
No 11
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.56 E-value=2.6e-07 Score=76.92 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.=++.++.++..++....+..+++||++|++|+++...... ++...|.+++.++.|.+| ||++|++.++..++.
T Consensus 107 aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~t-lA~v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~ 180 (394)
T COG2814 107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLT-LATVLGVPLGTFLGQLFG-WRATFLAIAVLALLA 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHH-HHHHHhccHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 33456666677778888899999999999999999999875 788999999999999999 999999986554444
No 12
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.54 E-value=3.5e-07 Score=71.29 Aligned_cols=77 Identities=5% Similarity=-0.086 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
.+++..++.+++.....++..+.+.|++|+++|+++.++...... +|...||.+.|++.++.| ||+.+++..+..++
T Consensus 94 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~ 170 (365)
T TIGR00900 94 QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRS-LFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAI 170 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 344455566666677777788999999999999999999999865 788999999999999999 99999876544433
No 13
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.53 E-value=4.9e-07 Score=74.74 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
....+.+|+++|++++|+.++..++.|...||.+.|++.|++| |++.|.++...+++++
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~ 428 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV 428 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 4567899999999999999887664444458999999999999 9999998765555543
No 14
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.52 E-value=8.4e-07 Score=59.73 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+++..++.++......+..+..+.+.+|+++|+++.++.....+ +|...+|.+.|++.|..+ |++.+.+.....+++
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIA-LGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHH-HHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHH
Confidence 34445556666666667777889999999999999999998865 678999999999999888 999988765444433
No 15
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.52 E-value=1.7e-08 Score=86.68 Aligned_cols=64 Identities=27% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
++|++++++..++.+....|...+++|+||+++|+.|+|+..++.+++|.+|||+++|+++|+.
T Consensus 452 ~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 452 IPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 5788888999999999999999999999999999999999999999999999999999999985
No 16
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.50 E-value=1.9e-07 Score=77.03 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAIL 79 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~ 79 (132)
+.-++.++..+...+.....+.+++|+++|++++++.....+ +|..++|++.|++.|++ | ||+.|++.++..
T Consensus 136 ~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~ 208 (465)
T TIGR00894 136 FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ-LGTFIFLPISGWLCESWGG-WPMIFYVFGIVG 208 (465)
T ss_pred HHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCC-CCeehhhhhHHH
Confidence 334455555566666777899999999999999999998765 78899999999999985 8 999999875443
No 17
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.49 E-value=7.4e-07 Score=73.44 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-----WRETALILTAILFPAAA 84 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-----~r~a~~~~~~~~iv~~~ 84 (132)
.++......+.....+.+.+|+++|+++.|+.+.....+|.++||++.|++.|++|+ |+.+|.+.++..+++++
T Consensus 318 ~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~ 396 (418)
T TIGR00889 318 YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV 396 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 333333444555667889999999999999997544457889999999999999642 99999887655555443
No 18
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.49 E-value=1.7e-06 Score=71.16 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILFPA 82 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~iv~ 82 (132)
.++.+++.+...++....+.+++|+++|++++++++...+ +|..++|++.+.+.+. .+ ||++|++.++..++.
T Consensus 125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i~ 198 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHN-IGGGIPPLLVLLGMAWFND-WHAALYFPAICAIIV 198 (438)
T ss_pred HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHH-hHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 3455555566667777888899999999999999988875 5668888888776554 56 999999876554443
No 19
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.49 E-value=1.2e-07 Score=74.15 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSS-PLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP-~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
.+++..++.+++.+...+..+..+.+++|+++|+++.++.....+ +|..++| .+.+.+.+..+ ||+.|.+.+...++
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN-VGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccch-hHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 445556666777777778888999999999999999999988765 6778888 56677777778 99998876544433
No 20
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.47 E-value=1e-06 Score=73.21 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------------hhhhHHHHHHHHHHHHHHHHHHHH
Q 032830 23 NFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------------RVNNWRETALILTAILFPAAAIWF 87 (132)
Q Consensus 23 ~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------------~~g~~r~a~~~~~~~~iv~~~~~~ 87 (132)
.....+.+|++.|++++|+.+...++.|..++|+++|++.| ..| |+..|++..+..+++.++..
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence 35566999999999999999988776677999999999999 556 99999888666666654443
No 21
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.45 E-value=1.5e-06 Score=69.11 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+++..++.+++.....++....+.+++|+++|++++++...... +|...+|++.|++.|.+| ||+.+.+.....++
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 157 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMT-IAPLLAPIIGGWLLVWFS-WHAIFWVLALAAIL 157 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHH
Confidence 34444555666666667778899999999999999999988765 688999999999999999 99999876544433
No 22
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.43 E-value=1.8e-06 Score=69.52 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=54.8
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+.+++.....+.......+.+|+++|++++|+++...+ +|..++|++.|++.|++| |++.+.+.++..+++
T Consensus 310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 381 (399)
T PRK05122 310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD-LSLGITGPLAGLVASWFG-YPSIFLAAALAALLG 381 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 344444444444555667788999999999999998865 576889999999999999 999998876554444
No 23
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.42 E-value=1.5e-06 Score=68.78 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+++..++.++......++...++.+.+|+++|+++.++...... +|...||.+.|++.|+++ ||+.+.+.+...++.
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLA-LAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 34444555555566667788899999999999999999998865 677899999999999999 999998765444333
No 24
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.42 E-value=2.5e-06 Score=73.25 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
|+.++.+++.+++.....++.+..+|..+|++.||++.+++.++.. .+..+|..+.|++.|++| .+.++.+.++.+++
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~-g~~~lGsll~G~la~~~g-~~~al~~a~~~lll 385 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF-GGMPLGSLLWGFLADHFG-VRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 4556677778888888888888999999999999999999998864 567889999999999999 99888876655444
Q ss_pred HHH
Q 032830 82 AAA 84 (132)
Q Consensus 82 ~~~ 84 (132)
+.+
T Consensus 386 ~~~ 388 (524)
T PF05977_consen 386 SAL 388 (524)
T ss_pred HHH
Confidence 443
No 25
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.42 E-value=3.6e-07 Score=74.94 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+++..++.+++.+...+.....+.+++|+++|+++.+++..... +|..+||.+.|++.|++| ||+.|++.....++.
T Consensus 92 ~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~ 169 (485)
T TIGR00711 92 LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVL-VAPALGPTLGGWIIENYH-WRWIFLINVPIGIIV 169 (485)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHhhhhhccHhHhccCcC-ceehhhhhhHHHHHH
Confidence 344455556666666677788899999999999999999988864 788999999999999999 999999875444333
No 26
>PRK03545 putative arabinose transporter; Provisional
Probab=98.41 E-value=1.5e-06 Score=70.03 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
..++.++..+...+.....+.+++|+++|++++|++....+ +|...||++.+.+.+++| ||+.|++.++..++.
T Consensus 103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~-~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~ 176 (390)
T PRK03545 103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTA-LAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALIT 176 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH-HHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHH
Confidence 33344444444456677888999999999999999988865 688999999999999999 999999876544433
No 27
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.41 E-value=1.2e-06 Score=73.56 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
++.-++.+++.+...+....++.+.+ |+++|+++.|++....+ +|...||++.|++.|++| |||.|++...+.++
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~-~g~~~gp~lgg~l~~~~g-wr~~f~i~~~~~~~ 173 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS-GGAAFGPLVGGILLEHFY-WGSVFLINVPIVLV 173 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHH
Confidence 33334455555554455556666665 67999999999998865 788999999999999999 99999987544433
No 28
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.37 E-value=9.1e-07 Score=72.54 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh------hhhHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR------VNNWRETALILTA 77 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~------~g~~r~a~~~~~~ 77 (132)
+++.-++.+++.+...+.....+.+++|+++|+++++++....+ +|..++|++.|++.+. .| ||++|.+.++
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~g-wr~~f~~~~~ 176 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP-VTMALGLILSGYILALDGLMALKG-WQWLFLLEGF 176 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHH
Confidence 33444556666666666666788999999999999999998876 6889999999999853 57 9999998654
Q ss_pred HHH
Q 032830 78 ILF 80 (132)
Q Consensus 78 ~~i 80 (132)
..+
T Consensus 177 ~~l 179 (412)
T TIGR02332 177 PSV 179 (412)
T ss_pred HHH
Confidence 433
No 29
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.36 E-value=3.6e-06 Score=71.27 Aligned_cols=80 Identities=10% Similarity=-0.000 Sum_probs=58.4
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCC--chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSI--RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 86 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~--R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~ 86 (132)
.+.+++.+...+....++.+++|+++ |..+.+++.+..+ +|..+||++.|++.|++| ||++|.+..+..+++.+.+
T Consensus 120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~-iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSIN-IGSFFSMLATPWLAAKYG-WSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHH-HHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence 33444445455666788899998654 4567888777776 688999999999999999 9999998765555655554
Q ss_pred HHHH
Q 032830 87 FIGI 90 (132)
Q Consensus 87 ~~~~ 90 (132)
....
T Consensus 198 ~~~~ 201 (500)
T PRK09584 198 AFCQ 201 (500)
T ss_pred HHhH
Confidence 4443
No 30
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.35 E-value=2e-06 Score=72.75 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCC--CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPS--IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~--~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
..++.+.+.+...+...+++.+.+|++ +|+.+.+++.+..| +|..+||.+.|++.|++| ||++|++.++..+++.+
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n-ig~~~g~~l~g~l~~~~g-w~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN-IGSLISLSLAPVIADKFG-YSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH-HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHH
Confidence 344445555555667788999999987 45788999999887 688999999999999999 99999987554444443
Q ss_pred HH
Q 032830 85 IW 86 (132)
Q Consensus 85 ~~ 86 (132)
.+
T Consensus 189 ~~ 190 (489)
T PRK10207 189 VY 190 (489)
T ss_pred HH
Confidence 33
No 31
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.35 E-value=1.8e-06 Score=72.59 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=57.2
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
..+.+++.+...+...+++.+++|+++ |+.+.+++....+ +|..+||++.|++.|++| |++.|.+.++..+++.
T Consensus 109 ~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n-iG~~ig~~l~g~l~~~~g-~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 109 LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN-IGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH-HHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 334444445555667788899998764 8889999998887 688999999999999999 9999998765444443
No 32
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.33 E-value=2.8e-06 Score=69.28 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 77 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~ 77 (132)
++++-.+.+++.+...+....++.|++|+++|+++.++.....+ +|...||++.+++.+.+| ||+.|++.++
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~~~l~~~~g-w~~~f~~~~~ 182 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVS-IALVIAAPLGSFLGELIG-WRNVFNAAAV 182 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Confidence 34444555666666667777888999999999999999998865 788999999999999999 9999988753
No 33
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.33 E-value=2.5e-06 Score=70.17 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 23 NFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 23 ~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
.....+..|++.|++++|+.+...+ +|...+|+++|++.|++| |+..|.+.+...+++++
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAY-LGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISAL 418 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHH-HHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999876 677999999999999999 99999877655544443
No 34
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.32 E-value=7.2e-08 Score=81.62 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
|+++++=.+.+..-+...+....++.|.+|..+|+++.+++.++++ .|.++|-+..+.+.+..++|||+|.+.+++.++
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip-vGsglG~vvgs~va~~~~~Wr~af~~~avl~vi 200 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP-VGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVI 200 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc-cccceeEEeeeeeccCccceEEEEEeehHHHHH
Confidence 4555555666777777777788999999999999999999999997 688999999999999888899999998766655
Q ss_pred HHHHHH
Q 032830 82 AAAIWF 87 (132)
Q Consensus 82 ~~~~~~ 87 (132)
.+++.+
T Consensus 201 ~~~L~~ 206 (493)
T KOG1330|consen 201 VGLLVF 206 (493)
T ss_pred HHHHHH
Confidence 544433
No 35
>TIGR00895 2A0115 benzoate transport.
Probab=98.32 E-value=2.4e-07 Score=73.06 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
+++..++.+++.....++....+.+.+|+++|+++.++.....+ +|..++|.+.|++.|..| |++.+.+.+...
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~ 181 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP-IGAAVGGFLAGWLIPVFG-WRSLFYVGGIAP 181 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHH-HHHHHHHHHHHHHhhccc-ceeehhhhhhHH
Confidence 44445556666666677888899999999999999999988765 688999999999999999 999998765333
No 36
>PRK12382 putative transporter; Provisional
Probab=98.31 E-value=3.8e-06 Score=67.51 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=58.0
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
.++.++......+.....+++.+|+++|+++.|+++...+ +|..+||.+.|++.|+.| |++.|.+.....+++.+
T Consensus 309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQD-IAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHH
Confidence 3344444444455566778889999999999999998865 677999999999999999 99999987655555443
No 37
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.31 E-value=3.4e-06 Score=65.76 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 86 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~ 86 (132)
..+.....+.+.+|+++|+++.|+.+...+ +|..++|.+.|++.|..|+|++.+.+.++..+++.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGN-LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHH-HhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999875 67899999999999998879998888766655554443
No 38
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.27 E-value=3.4e-06 Score=70.16 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++..+....+...++.+++| ++|++++++...... +|...+|++.|++.|.+| ||++|++.++..+++
T Consensus 119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~-~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSP-VFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHC 186 (455)
T ss_pred HhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 44444444566677778886 789999999998865 677899999999999999 999999886555443
No 39
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.27 E-value=1.1e-05 Score=66.69 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+++.++.+++.+...++....+.+++|+++|++++++++...++.+...+|++.+.+....| ||++|++.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~ 199 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAIL 199 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 34445566666667777778888999999999999999888764433456655433333346 99999887544333
No 40
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.26 E-value=4.8e-06 Score=67.89 Aligned_cols=72 Identities=7% Similarity=-0.078 Sum_probs=54.9
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
-++.++.... ..+....+.+++|+++|++++++...... +|..++|++.+++.+++| ||+.|.+.++..++.
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~-lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMY-LGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence 3344444432 34555666899999999999999998865 788999999999999999 999998875444333
No 41
>PRK10504 putative transporter; Provisional
Probab=98.26 E-value=4e-06 Score=69.09 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+..++.+++.+...+.....+.+.+|+++|+++.++.....+ +|..+||.+.|++.|++| ||+.|.+......++
T Consensus 103 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~~~l~ 177 (471)
T PRK10504 103 LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQ-VGPLLGPALGGLLVEYAS-WHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhcc-HHHHHHHHHHHHHHH
Confidence 334455555555556677788999999999999999988765 677999999999999998 999998875444333
No 42
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.24 E-value=6.9e-06 Score=65.81 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=58.4
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
.+.+++.....+.....+++..|+++|++..++++...+ +|...||.+.|++.|.+| |++.|.+..+..+++++.
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD-IGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH-HHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Confidence 344445555556666778889999999999999988765 688999999999999999 999999876655555433
No 43
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.7e-06 Score=73.30 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILFPA 82 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~iv~ 82 (132)
.+++=++-|+..+...+..+.+..++.|+++|++..++...... +|.+.+-++.|++.+. +| |++.|++.+.+.++.
T Consensus 131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q-~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~ 208 (466)
T KOG2532|consen 131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ-LGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIW 208 (466)
T ss_pred hHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHH
Confidence 34444556666677778888999999999999999999988864 7889999999999999 88 999999986555444
Q ss_pred HHH
Q 032830 83 AAI 85 (132)
Q Consensus 83 ~~~ 85 (132)
.++
T Consensus 209 ~~~ 211 (466)
T KOG2532|consen 209 FIL 211 (466)
T ss_pred HHH
Confidence 333
No 44
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.23 E-value=8.7e-06 Score=66.84 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+.-++.++..+...+.....+.|.+|+++|++++++.....+ +|...||++.|++.|++| ||+.|++.++..+++
T Consensus 109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~ 183 (413)
T PRK15403 109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVL-VAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence 333444444443344456778899999999999999988865 678999999999999888 999998876544433
No 45
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.22 E-value=7.4e-06 Score=70.17 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
+.++-++.|++.+... ..+..+..++|+++|++++|++..... +|.++++++.++ ...+| ||+-..+.-+.+...+
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~-vG~~Ia~~L~ql-l~s~g-Wr~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVL-LGVFLSSVLGQL-LVTLG-WISYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHHH
Confidence 3344455666666666 778899999999999999999999875 788999999999 55678 9987766533333333
Q ss_pred HHHHHHHHHhhccc
Q 032830 84 AIWFIGIFLHSVDK 97 (132)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (132)
+.+.++.++++.+|
T Consensus 194 ~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 194 FSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHhCCCCch
Confidence 44445556665555
No 46
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.21 E-value=3.9e-06 Score=65.46 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=55.1
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.++......+.....+.+.+|+++|+++.|+.+...+ +|..++|++.|++.|+.| |++.+.+.++..+++
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA-VAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence 3333344444556678899999999999999998876 678999999999999999 999998876554443
No 47
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.20 E-value=7.7e-06 Score=65.96 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 80 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i 80 (132)
++..++.++..+...+.....+.+++|+++|+.+++++..... +|...||++.|++.|.+| ||++|.+.++..+
T Consensus 95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~ 168 (382)
T PRK10091 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMT-VANLLGIPLGTYLSQEFS-WRYTFLLIAVFNI 168 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHH-HHHHHhccHHHHHhhhcc-HHHHHHHHHHHHH
Confidence 3344445555444455556778899999999999999887764 677889999999999989 9999998764433
No 48
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.20 E-value=1.1e-05 Score=65.89 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
++..++.++..+...++..+.+.+.+|+++|++++|+.....+ +|..+||.+.|++. .+| ||+.|++.++..++.+
T Consensus 103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 103 WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDS-AGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHH
Confidence 3344445555555556677889999999999999999999875 78899999999999 568 9999998765554443
No 49
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.18 E-value=1.3e-05 Score=61.60 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+++...+.++......++....+.+.+|+++|+++.++.....+ +|...||.+.+.+.|..+ |++.+.+.....+++
T Consensus 90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (352)
T cd06174 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG-LGALLGPLLGGLLAESLG-WRWLFLILAILGLLL 166 (352)
T ss_pred HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 34445555666666677888899999999999999999998865 688999999999999988 999998875544443
No 50
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.17 E-value=3.9e-06 Score=65.89 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
...++.+++.....++....+.+.+|+++|+++.++.....+.+|..++|.+.|++.|+.|+|++.++...
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 33444555555666778889999999999999999855455567888999999999999887777766654
No 51
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.17 E-value=2.4e-06 Score=68.49 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH---HHHHHhhhhHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV---GVLQDRVNNWRETALILTA 77 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~---G~l~D~~g~~r~a~~~~~~ 77 (132)
+++.-++.+++.+...+.....+.+++|+++|+++++++....+ +|..++|.+. +.+.+..+ ||+.|.+..+
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~ 204 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAIT-FGILVAYGFGSGKVSLNNTLG-WRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHH
Confidence 44444555555555666677889999999999999999988764 7888899988 66666777 9999998543
No 52
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.16 E-value=1.8e-05 Score=63.41 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=51.1
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+.....+.+.+|+++|+.+.++...... +|...+|.+.|++.|.++ ||+++.+.++..++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 185 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGV-SGALLGPLAGGLLADSYG-LRPVFFITASVLFLC 185 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 45556778899999999999999988764 677899999999999999 999998876544443
No 53
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.16 E-value=8.2e-06 Score=65.67 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 77 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~ 77 (132)
+++..++.++......+...+.+.+.+|+++|++++++...... +|..++|.+.+.+.+.++ ||+.|++.++
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 177 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVP-FGGALASVIGVLAAGDAA-WRHIFYVGGV 177 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccC-HHHHHHHHHH
Confidence 34445555666666667778899999999999999999998865 677889999888988888 9999987653
No 54
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.16 E-value=9.4e-06 Score=64.33 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-hHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-NWRETALIL 75 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-~~r~a~~~~ 75 (132)
++..++.+++.+...+.....+.+++|+++|+++.++...... +|..++|.+.+.+.+..+ +||+.+.+.
T Consensus 104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~l~~~l~~~~~~~w~~~f~~~ 174 (405)
T TIGR00891 104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA-VGAVVAAQVYSLVVPVWGDGWRALFFIS 174 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 3444556666666677778889999999999999999988764 788999999999998764 499988764
No 55
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.15 E-value=7.6e-06 Score=66.67 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=46.4
Q ss_pred hHHHHHhHhhcCCCCchHHHHH-HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAI-STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi-~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
......+.+.+|++.|++..++ +++.. .+|.++||++.|++.|.+| |+..|...+++.+++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~ 395 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAK-QLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLF 395 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHH-HHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHH
Confidence 3344566788999999988665 45543 4788999999999999999 999999876544443
No 56
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.15 E-value=1.3e-05 Score=68.44 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=53.8
Q ss_pred hhHHHHHhHhhcCCC--CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPS--IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 86 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~--~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~ 86 (132)
.+...+++.+.+|++ +|.++.+++....| +|...+|++.|++.+++| |++.|.++++..+++.+.+
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n-lG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGN-VGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHH-HHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHH
Confidence 344667889999975 79999999999988 577999999999999999 9999998765555554444
No 57
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.15 E-value=1.4e-05 Score=64.29 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=52.1
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
+.+++.....+.......+.+|+++|+++.|+++...+ +|..+||.+.|++.|+.+++...+......
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR-LGSMAGPLLAGQLLALGRSTVGVIGASIPV 384 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh-HHHHHHhhhHhhhhccCCchHHHHHHHHHH
Confidence 33444444456667788999999999999999999865 677899999999999876577666655433
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.14 E-value=1.7e-05 Score=63.82 Aligned_cols=72 Identities=8% Similarity=-0.044 Sum_probs=55.8
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++.++..+...+.....+.+.+|+++|+++.++.+...+ +|..++|.+.+++.|..| |++.+.+..+..++.
T Consensus 99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC-IIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHH
Confidence 344444444556677888999999999999999988765 667889999999999888 999998875444333
No 59
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.13 E-value=1.2e-05 Score=65.40 Aligned_cols=69 Identities=16% Similarity=-0.009 Sum_probs=54.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 80 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i 80 (132)
+.+++.....++....+.+.+|+++|+++.++.....+ +|...||.+.|++.|..+ |+|.+.+..+..+
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~ 187 (417)
T PRK10489 119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR-LGSVISPALGGLLIAAGG-VAWNYGLAAAGTF 187 (417)
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh-HHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 33444444556667788999999999999999887764 688999999999999988 9999887654433
No 60
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.11 E-value=2.5e-05 Score=65.42 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=42.9
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
..+.....+.+.+|++.|++++|+........ ..++|.+.|++.|..++|+..+++..
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~ 416 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLM 416 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34445566778999999999999744444444 48899999999998776776665543
No 61
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.11 E-value=1.1e-05 Score=62.10 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
.++..++.+++.....+.....+++.+|+++|++.+|+.+...+ +|..++|.+.|++.|..+ |++.+.+.++..+++.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS-LGGALGPLLAGLLLDTGG-YGGVFLILAALALLAA 345 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHH
Confidence 44556667777777788888999999999999999999999875 677999999999999888 9999998876665554
Q ss_pred HH
Q 032830 84 AI 85 (132)
Q Consensus 84 ~~ 85 (132)
++
T Consensus 346 i~ 347 (352)
T cd06174 346 LL 347 (352)
T ss_pred HH
Confidence 43
No 62
>PRK03545 putative arabinose transporter; Provisional
Probab=98.11 E-value=3.1e-05 Score=62.38 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=49.3
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
......+++..| +.|++++|+++...+ +|...||++.|++.|++| ++..+.+..++.+++.++
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~ 375 (390)
T PRK03545 313 LAMQVKVLKLAP-DATDVAMALFSGIFN-IGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVW 375 (390)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHH
Confidence 334456667655 689999999988765 688889999999999999 999998877665555444
No 63
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.10 E-value=3.9e-05 Score=64.72 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=54.1
Q ss_pred HhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 15 VFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 15 ~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
.....++.++..++.++++.+++..|+.+...+ +|...++++.|++.|.+| |+..|.+..+..+++.+
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~-lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~ 397 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSA-VGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLL 397 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 344456677888899999999999999998875 576778889999999999 99988877655555533
No 64
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.09 E-value=1.1e-05 Score=66.57 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+++..++.+++.+...+.....+.+.+|+++|+++.++.....+ +|..++|.+.+++.+.++ ||+.|.+.
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-w~~~f~~~ 180 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS-IGAVVAAQVYSLVVPVWG-WRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCC-HHHHHHHH
Confidence 34444555665666667778889999999999999999998765 688999999999999999 99998763
No 65
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.09 E-value=2.4e-05 Score=62.41 Aligned_cols=76 Identities=14% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh---------------hh
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR---------------VN 66 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~---------------~g 66 (132)
+.+++.+++.+...+...+..|..+.++.|++.+++.+++...+. -+|..+||++.+.++.. ..
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~-~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFN-KLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence 567888888899999999999999999999999999999999986 47889999999998842 12
Q ss_pred hHHHHHHHHHHH
Q 032830 67 NWRETALILTAI 78 (132)
Q Consensus 67 ~~r~a~~~~~~~ 78 (132)
+|++.+++.+.+
T Consensus 90 ~~~~~yl~ia~~ 101 (310)
T TIGR01272 90 KVHTPYLLLAGA 101 (310)
T ss_pred HHHHHHHHHHHH
Confidence 488888865443
No 66
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.08 E-value=2.7e-05 Score=66.18 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.|+++-.+.+++.+..++.+-++..++.|+++.+.-.|++.+..+ ....+||.++|.+.|.+|+.|+++..+.++++++
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk-~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g 460 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGK-ASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG 460 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 455555666777777778888999999999999999999999876 4569999999999999999999999887666666
Q ss_pred HHHH
Q 032830 83 AAIW 86 (132)
Q Consensus 83 ~~~~ 86 (132)
.+++
T Consensus 461 l~ll 464 (477)
T PF11700_consen 461 LILL 464 (477)
T ss_pred HHHH
Confidence 5544
No 67
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.08 E-value=6.1e-06 Score=66.17 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=51.5
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
+.....+.+++|+++|++++|+.++..+ +|..++|.+.|++.|+.| |++.|++.+++.++++++
T Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~-lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 402 PVPWVIVSEIFPLSLRPKGISIAVAANW-LANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred CeehhhhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHH
Confidence 3344566899999999999999999876 677999999999999988 999888776555444433
No 68
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.07 E-value=2.5e-05 Score=63.38 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAILF 80 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~i 80 (132)
+++.++.+++.+...++..+++.+++|+++|+++.++.....+ +|...|+.+.+++.+++ | ||..|++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~-~g~i~g~~l~~~l~~~~~g-w~~~f~i~a~~~l 172 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYR-LAMLVSGGLALWLADRVLG-WGNTYLLMAGLML 172 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHH-HHHHHHhHHHHHHHhcccC-HHHHHHHHHHHHH
Confidence 3343444566666667788899999999999999999998754 68888999999999975 7 9999998765443
No 69
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.07 E-value=1.5e-05 Score=64.52 Aligned_cols=70 Identities=6% Similarity=0.083 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+++.-++.+++.+...+.....+.+.+|+++|+++++++..... +|..++|.+.+.+.|.++ ||+.+++.
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~~~~~~l~~~l~~~~~-w~~~f~i~ 178 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFG-IGNIIAAYFMPSFAEAYG-WRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHh-HHHHHHHHHHHHHcccCC-HHHHHHHH
Confidence 33444555656566667778889999999999999999988764 688889999999999988 99999864
No 70
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.06 E-value=1.5e-05 Score=72.68 Aligned_cols=70 Identities=7% Similarity=-0.110 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
.++++.++.+.+.++..+...+++.+++|+++|+.++|+.++..+ +|.++||++.|++.+..+ |++.|..
T Consensus 110 ~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~-ig~~igp~l~g~l~~~~~-~~~~~~~ 179 (1140)
T PRK06814 110 LLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTF-IAILLGTIIGGLATISGN-FVILVAL 179 (1140)
T ss_pred HHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHHHHhccc-cHHHHHH
Confidence 455566677777777778888999999999999999999999876 688999999999999988 9999833
No 71
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.05 E-value=2.6e-05 Score=65.77 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAILF 80 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~i 80 (132)
+.+...+.+++.+....+..+...+++|+++|+++.++.....+ +|...++.+.+++.|+ .| ||..|++.++..+
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~-lG~llg~~l~~~l~~~~~G-Wr~~f~i~a~l~l 185 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYR-LAMLVSGGLALWLADRYLG-WQGMYWLMAALLI 185 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH
Confidence 34445566677777777788899999999999999999998765 7889999999999994 67 9999998765443
No 72
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.05 E-value=2.9e-05 Score=60.53 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++...+.++..+...+.....+.++.| ++|+.++++.....+ +|...++++.+.+.|..| ||+.|.+.++..++.
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYG-LGSFILSPLITSVINLEG-VPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcc-hhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence 334445555544444555566677776 579999999988764 676677777788888888 999998876444333
No 73
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.04 E-value=2.8e-06 Score=72.64 Aligned_cols=82 Identities=20% Similarity=0.087 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------hhhhHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------RVNNWRETALIL 75 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------~~g~~r~a~~~~ 75 (132)
+.++++.++.+++.+..+++...++..++.+++|+.-+|++..... +|.++|.++...+.. ..| |||.|.+.
T Consensus 135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~-~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~ 212 (495)
T KOG2533|consen 135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASAS-LGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIE 212 (495)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc-hhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHH
Confidence 4577888999999999999999999999999999999999998764 677888887765432 235 99999998
Q ss_pred HHHHHHHHHH
Q 032830 76 TAILFPAAAI 85 (132)
Q Consensus 76 ~~~~iv~~~~ 85 (132)
+++.++.+++
T Consensus 213 G~i~~~~gi~ 222 (495)
T KOG2533|consen 213 GVITLVLGIV 222 (495)
T ss_pred HHHHHHHHhe
Confidence 7665555443
No 74
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.02 E-value=1.7e-05 Score=69.35 Aligned_cols=61 Identities=15% Similarity=-0.023 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
+++.-++.+++.+...+.....+.|.+|+++|+.++|++.... .+|+++||++.|++.+.+
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~-~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA-VFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH-HhhhHHHHHHHHHHHhcc
Confidence 3445556666666666667789999999999999999999885 589999999999998753
No 75
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.99 E-value=8.7e-06 Score=67.60 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILF 80 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~i 80 (132)
.++++.++.+++.+...++...++.+++|+++|++++|++....+ +|.++++++..++.+.+ ++||..|.+.++..+
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~-lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~ 202 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN-LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL 202 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc-hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence 344455566777777778888899999999999999999988765 68888998888887764 238888776654443
No 76
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.98 E-value=1.7e-05 Score=62.86 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=51.4
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.+++.....+.....+++.+|+++|++++|+.+.+.+ +|..+||++.|++.|+.|+|+.++...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGN-LGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHH-HHHHHHHHHHHHHHHhccccchhHHhh
Confidence 3344444555667788999999999999999988875 677999999999999999787777654
No 77
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.97 E-value=2.7e-05 Score=64.02 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=47.5
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
....+.+|+++|++++|+.+...+..|...||.+.|++.|+.| |.+++.++....+++.+
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI 427 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 3566889999999999999887665456789999999999999 99998876554444433
No 78
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.97 E-value=5e-05 Score=60.17 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=55.8
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-------HHHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-------WRETALILTAILF 80 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-------~r~a~~~~~~~~i 80 (132)
+.+++.+....+..+.+.+++|+++|+.+.++.....+ +|..++|.+.+++.+.++. ||+.|.+.++..+
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l 168 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYR-AGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL 168 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence 44455555667778889999999999999999988875 6889999999999988763 9999987654433
No 79
>PRK11043 putative transporter; Provisional
Probab=97.97 E-value=3.9e-05 Score=61.87 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=48.7
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
........+.+.+|+++++.+.+....... +|...+|.+.|++.|++| ||+.+++..+..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~ 172 (401)
T PRK11043 111 AAVIWQALVIDRYPAQKANRVFATIMPLVA-LSPALAPLLGAWLLNHFG-WQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 334455678899999999999888776654 577899999999999999 99999887544433
No 80
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.94 E-value=8.3e-05 Score=60.26 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=47.8
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
+......++..|+ +|++++++++...+ +|..+||.+.|++.|++| |++.+.+..+..+++.
T Consensus 324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~-lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 324 GIGMLYFQDLMPG-QAGSATTLYTNTSR-VGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHhCCC-CcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence 4444566788875 59999999988765 688999999999999998 9999987655544443
No 81
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.94 E-value=5.8e-06 Score=69.56 Aligned_cols=85 Identities=12% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
++-.++++..+|+.+.++--+.....+++|++--|+|+|+..++..+.|.+.+....|+++|.+| |...|.+..+..++
T Consensus 347 ~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l 425 (448)
T COG2271 347 LLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALL 425 (448)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHH
Confidence 35566778888888888877888889999999999999999999988799999999999999999 99999987666666
Q ss_pred HHHHHH
Q 032830 82 AAAIWF 87 (132)
Q Consensus 82 ~~~~~~ 87 (132)
+.+++.
T Consensus 426 ~~lll~ 431 (448)
T COG2271 426 AILLLL 431 (448)
T ss_pred HHHHHH
Confidence 655444
No 82
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.94 E-value=3.5e-05 Score=61.98 Aligned_cols=66 Identities=8% Similarity=-0.118 Sum_probs=51.5
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
++.+++.+...+.....+.+.+|+++|++++++.....+ +|..+||.+.|++.+++| |++.+.+..
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~g-~~~~~~~~~ 185 (399)
T PRK05122 120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATY-GALAIGAPLGVLLYHWGG-LAGLGLLIM 185 (399)
T ss_pred HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhh-HHHHHHHHHHHHHHHccc-HHHHHHHHH
Confidence 344444454555566677899999999999999877754 688899999999999999 998876643
No 83
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.92 E-value=3.4e-05 Score=63.02 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=41.2
Q ss_pred cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 17 ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 17 ~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
...++....+.+.+|+++|+++.|++++... +|..+||.+.|++.|+.+
T Consensus 313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 313 IAEPARETLSASLADARARGSYMGFSRLGLA-LGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHccHHHHHHhcCCcccchhhhhHHHHHHH-HHHHhcccchHHHHHHHh
Confidence 3345566788899999999999999998865 688999999999999864
No 84
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.92 E-value=6.2e-05 Score=60.55 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=51.8
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
++.+++.....+.......+.+++++++.+.+++.+.. .+|...||.+.|++.|+.| ||+.+++..+..
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~ 172 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGI-LVSPLLAPLIGGLLTTLFG-WRACYLFLLLLG 172 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 33444333333444566778889999999999988876 5777899999999999989 999998865433
No 85
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.92 E-value=0.0001 Score=59.87 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.+++.-++.++..+...+....++.+++| ++|+++++++....+ +|..+|+.+.+++.++.++||+.+.+..
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~~g~~~~~~l~~~~~~w~~~~~~~~ 170 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALM-GGGGLGAAITPWLVQHSETWYQTLAWWA 170 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34445556666666666667778888886 789999999988764 6789999999999998733999987654
No 86
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.92 E-value=2.3e-05 Score=61.22 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=47.3
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
.+++.............+.+|+++|+++.|++++..+ +|...+|.+.|++.|++| |+++|
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g-~~~~f 379 (379)
T TIGR00881 320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAY-LGGILAGLPLGYLADGFG-WAGAF 379 (379)
T ss_pred HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-hhhhhhhhhHHHHHHhhc-ccccC
Confidence 3333334444455678899999999999999998875 677899999999999998 88754
No 87
>PRK12382 putative transporter; Provisional
Probab=97.90 E-value=5.7e-05 Score=60.70 Aligned_cols=62 Identities=15% Similarity=-0.016 Sum_probs=47.7
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
.+...+...+.....+.+.+|+++|+++++++....+ +|..+||++.|++.+++| |++.+.+
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~-~g~~~g~~~~~~l~~~~g-~~~~~~~ 183 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMY-GALAAGAPLGLLLHSHFG-FAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHH-HHHHHHHHHHHHHHhccC-hHHHHHH
Confidence 3333333344455677899999999999999888754 678899999999999999 9876554
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.90 E-value=0.00013 Score=59.21 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=42.4
Q ss_pred hHHHHHhHhhcCCCCch--HHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRP--LSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~--~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+....++.+..+++.|. ...++.....+ +|..+||++.|++.|++| ||+.|.+.++..++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~ 186 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVS-LAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVC 186 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence 33445556666665453 33466666654 688999999999999999 999998875444443
No 89
>PRK09952 shikimate transporter; Provisional
Probab=97.90 E-value=7.4e-05 Score=61.72 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q 032830 12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALILTAILFPAA 83 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~~~~~iv~~ 83 (132)
++......+..+..+.+.+|++.|+++.++.....+.+|...+|.+.|++.|.. ++|...+....+..+++.
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~ 426 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 333344455677888999999999999998665555567789999999999976 348777766554444443
No 90
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.89 E-value=6.5e-05 Score=60.75 Aligned_cols=71 Identities=7% Similarity=-0.031 Sum_probs=53.8
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
++.+.......+.....+.+.+|+++|..+.++...... +|...||.+.+++.|..+ ||+++++.++..++
T Consensus 109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~ 179 (406)
T PRK15402 109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL-LAPLLGPLVGAALIHVLP-WRGMFVLFAALAAL 179 (406)
T ss_pred HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence 333444444445667788899999999999998877654 677899999999999888 99999876544443
No 91
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.89 E-value=0.00011 Score=61.67 Aligned_cols=59 Identities=10% Similarity=-0.106 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ 62 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~ 62 (132)
.++++-++.+++.+...++....+.+++|+++|++++++..... .+|...|+.+.+++.
T Consensus 117 ~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 117 TLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ-GFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34556667777777778888899999999999999999998876 477788888877654
No 92
>PRK10054 putative transporter; Provisional
Probab=97.88 E-value=7.9e-05 Score=60.77 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=48.6
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+.......|.+|+++|+++.++.....+ +|...||++.|++.+ .| |++.|.+..+..+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLN-IGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHH
Confidence 34455677899999999999999998876 688999999999886 67 999998765444443
No 93
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.88 E-value=7.2e-05 Score=58.94 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=40.5
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh----------hhhHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR----------VNNWRETALI 74 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~----------~g~~r~a~~~ 74 (132)
...+....+.+++|+++|+.+.+++....+ +|...++.+.+.+.+. .+ ||+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~~~ 171 (366)
T TIGR00886 107 SFASCMPWISFFFPKKIQGTALGLAAGWGN-MGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAFVI 171 (366)
T ss_pred hhHhHHHHHHHhcCHhhhhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhccccccccc-ccchhHH
Confidence 345677888999999999999999886654 5656666666655543 25 9999854
No 94
>PRK03699 putative transporter; Provisional
Probab=97.87 E-value=9.6e-05 Score=59.81 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR-VNNWRETALILTAIL 79 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~-~g~~r~a~~~~~~~~ 79 (132)
+++..++.+++.+...+.....+.+.+|+++|+.++++...... +|...+|.+.|++.+. .| ||+.|.+.++..
T Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~g-w~~~f~~~~~~~ 172 (394)
T PRK03699 98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFS-MAGMIFPIIAAYLLARSIE-WYWVYACIGLVY 172 (394)
T ss_pred HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 34444555666666666777888999999999999998876654 5668899999988764 56 999998765443
No 95
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.86 E-value=7.2e-05 Score=60.79 Aligned_cols=66 Identities=12% Similarity=-0.054 Sum_probs=48.3
Q ss_pred hcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
....+.......+..+ +++|+++.++.+...+ ++...||++.|++.|++|+++..+.+..+.++++
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (393)
T PRK09705 307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGF-IIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL 373 (393)
T ss_pred cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3333444445556664 5789999999888865 4568899999999999988888888776554443
No 96
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.86 E-value=0.0001 Score=58.15 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=53.2
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
.+++.....+.....+++..|+ ++++++++++...+ +|...||.+.|++.|..| |+..+.+..+..+++.++
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGR-VGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence 3444444445555677787775 56799999998876 788999999999999999 999998876555555443
No 97
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.86 E-value=4.3e-05 Score=61.58 Aligned_cols=66 Identities=17% Similarity=0.019 Sum_probs=47.5
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 77 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~ 77 (132)
.++.+++.....+...++..++ .++|+.+.+......+ +|..+||++.|++.|++| ||..|++.++
T Consensus 101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~-lg~~igp~lgg~l~~~~g-~~~~f~~~~~ 166 (382)
T PRK11128 101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS-IAFVIGSALTGKLVSWFG-EQAILWILTA 166 (382)
T ss_pred HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH-HHHHHHHHHHHHHHHHcC-hhHHHHHHHH
Confidence 3334444455555555666665 3457777777777654 789999999999999999 9999887653
No 98
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.85 E-value=0.00013 Score=61.04 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~ 75 (132)
++++-++.++..+...++....+.+++|+++|+++.++..... .+|..+|+.+...+. +.+| ||+.|++.
T Consensus 121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-~~G~~lg~~~~~~~~~~~~~~~~~~~g-WR~~f~i~ 198 (490)
T PRK10642 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGS-IAGFVLGAGVVVLISTIVGEANFLDWG-WRIPFFIA 198 (490)
T ss_pred HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHhcCcc-HHHHHHHH
Confidence 3444556677777778888899999999999999999887664 456666665554443 2567 99999885
Q ss_pred H
Q 032830 76 T 76 (132)
Q Consensus 76 ~ 76 (132)
.
T Consensus 199 ~ 199 (490)
T PRK10642 199 L 199 (490)
T ss_pred H
Confidence 4
No 99
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.84 E-value=0.00013 Score=57.53 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=45.8
Q ss_pred cchhHHHHHhHhhcCCCCchHH--HHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 17 ATQGPVNFICLHCVKPSIRPLS--MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 17 ~~~~~~~~ii~~~vp~~~R~~a--~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
...+....+..+..|++.|+.+ .++.....+ +|..+||++.|++.|.+| ||+.|.+.++..++.
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~ 168 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQIS-LAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLC 168 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh-HHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence 3344455666777787777754 466555544 688999999999999999 999999876544433
No 100
>PRK15075 citrate-proton symporter; Provisional
Probab=97.84 E-value=9.5e-05 Score=60.77 Aligned_cols=55 Identities=7% Similarity=-0.018 Sum_probs=41.7
Q ss_pred HHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830 14 LVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR 69 (132)
Q Consensus 14 ~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r 69 (132)
+.....+..+..+.+.+|+++|+++.++.....+.++..++|.+.|++.|++| ++
T Consensus 344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~ 398 (434)
T PRK15075 344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK 398 (434)
T ss_pred HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence 33333444566788999999999999986555555555789999999999988 44
No 101
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.81 E-value=0.00015 Score=62.93 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
.+-.+-+...+..+..+.+-+.+..||+.|+++-++.....+-+|-.+|.+|+|.+..+++ -|..|.+.++.+++..+.
T Consensus 464 Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 464 PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLAL 542 (618)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHH
Confidence 3445566666777777778888999999999999999999888999999999999999999 999999988777777666
Q ss_pred HHHHHHHh
Q 032830 86 WFIGIFLH 93 (132)
Q Consensus 86 ~~~~~~~~ 93 (132)
+...-++.
T Consensus 543 ~~~iq~~l 550 (618)
T KOG3762|consen 543 FISIQLLL 550 (618)
T ss_pred HHHhhhhh
Confidence 65544444
No 102
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.80 E-value=1.7e-05 Score=66.45 Aligned_cols=63 Identities=6% Similarity=-0.090 Sum_probs=39.8
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 032830 21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~iv~~~~~~~~ 89 (132)
..++++.+. +++.+|.+.|+.+. +..+|+++.+++.|.. ++|+.+|.+.++..++++++.+..
T Consensus 368 ~~~~~~~~~-~~~~~g~~~g~~~~-----~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 368 ATFGIVPFV-SRRSLGVISGLTGA-----GGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhcccCccc-Chhhchhhhhhhhc-----cccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 333444443 45689999888643 3355666677766632 249999998877777776655443
No 103
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.80 E-value=2.5e-05 Score=66.89 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=60.0
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
...++.|.++.++-+.+.|+..++.. ++...||++.|++.|..|+|..+|+.+++..+++++++++..
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~g-i~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQG-IGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhH-HHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 33588899999999999999999875 667899999999999999999999999988888888777666
No 104
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.78 E-value=0.00019 Score=57.77 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=52.4
Q ss_pred HHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 13 LLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 13 ~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+......+..+..+++..++ +.+++..++.+...+ +|..+||.+.|++.|++| ++..|...++..+++
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRD-LGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence 33455555666676777776 889999999998875 688999999999999999 998888765544443
No 105
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.76 E-value=0.00024 Score=59.53 Aligned_cols=62 Identities=24% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
....+.+.+.......++..+++.|.+|+++|+++.++...+. ++|.+.+.++.|.+.|.+.
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Ml-i~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVML-IVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHccccC
Confidence 3445666677777778899999999999999999999998876 7899999999999999876
No 106
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.76 E-value=0.00013 Score=65.28 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+.++.+++....++.....+.+++|.+.|++++|+.+.+.+ +|.++||+++|++.+. + ....|.+.+++++++
T Consensus 654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~r-lGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 654 LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCK-AAAVLGILIFGSFVGI-T-KAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHH
Confidence 34455555666667777889999999999999999999977 6889999999998875 3 444555544444443
No 107
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.76 E-value=0.00011 Score=57.74 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=50.1
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------hhhhHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD--------RVNNWRETALILTA 77 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D--------~~g~~r~a~~~~~~ 77 (132)
++.++......+.....+.+.+|+++|+++.++...... +|..++|.+.+.+.+ .++ ||+.+.+..+
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~G~~i~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~ 178 (394)
T TIGR00883 104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAP-VGLLLAALTVLLLSYLLGDDALLEWG-WRIPFLVSAV 178 (394)
T ss_pred HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHhhccc-hHHHHHHHHH
Confidence 444444455556677889999999999999999988764 788888888776653 456 9998876543
No 108
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.76 E-value=0.00013 Score=60.01 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=52.4
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALILTAILF 80 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~~~~~i 80 (132)
++.++..+...+...+.+.+++|+++|++++++..... .+|..+++.+.+.+. +.+| ||+.|.+..+..+
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~ 205 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI-IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPAL 205 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHH
Confidence 45555556666778889999999999999999998875 477777877665543 3457 9999987654433
Q ss_pred H
Q 032830 81 P 81 (132)
Q Consensus 81 v 81 (132)
+
T Consensus 206 ~ 206 (479)
T PRK10077 206 L 206 (479)
T ss_pred H
Confidence 3
No 109
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.75 E-value=0.00017 Score=59.40 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------------------
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD-------------------- 63 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D-------------------- 63 (132)
+++..++.++..+...++.+..+.++.|+++|++.+++.+...+ +|..+||.+.+.+..
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNP-FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS 175 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence 34445566666677777788888899999999999999988865 688899999887742
Q ss_pred ------hhhhHHHHHHHHHHHHH
Q 032830 64 ------RVNNWRETALILTAILF 80 (132)
Q Consensus 64 ------~~g~~r~a~~~~~~~~i 80 (132)
..+ ||+.|.+.+++.+
T Consensus 176 ~~~~~~~~~-w~~~fl~~a~~~~ 197 (410)
T TIGR00885 176 AIKHSDLAS-VQTPYMIIGAVVL 197 (410)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHH
Confidence 234 9999987765433
No 110
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.74 E-value=9.9e-05 Score=59.74 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=43.3
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.....+.+.+|++.|++++|+...+.+ +|...||++.|++.|++| +.....+.
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~-~~~~~gp~~~g~l~~~~g-~~~~~~~~ 393 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAA-TSGTFNSMAATWLGITMG-LGAALTFI 393 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHh-HHHHHHHHHHHHHHHccc-HHHHHHHH
Confidence 344677899999999999999888776 567899999999999998 76655443
No 111
>PRK15075 citrate-proton symporter; Provisional
Probab=97.73 E-value=0.00018 Score=59.12 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL 75 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~ 75 (132)
+-++.++..+...+.....+.+++|+++|+++++++....+ +|...||.+.+.+. +.+| ||+.|++.
T Consensus 123 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~-~g~~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~ 197 (434)
T PRK15075 123 GRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ-VAVVFAALLGYLLNQWLSPAQMAEWG-WRIPFLIG 197 (434)
T ss_pred HHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence 33455555555566677889999999999999999887765 56667777766653 5667 99999864
No 112
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.73 E-value=6.2e-05 Score=62.11 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILTAILFPA 82 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~~~~iv~ 82 (132)
++++++.+++.....+.......+..|+ .+|.+.++.++... +|+.++|.+.|++.|.. ++|+.+|.+..+..+++
T Consensus 365 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~-l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~ 442 (465)
T TIGR00894 365 IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGF-IGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC 442 (465)
T ss_pred HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHH-HHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHH
Confidence 3344455544444444455556677765 89999999999875 67899999999999864 44888888876666555
Q ss_pred HHH
Q 032830 83 AAI 85 (132)
Q Consensus 83 ~~~ 85 (132)
.++
T Consensus 443 ~i~ 445 (465)
T TIGR00894 443 VIF 445 (465)
T ss_pred HHH
Confidence 444
No 113
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.73 E-value=0.00018 Score=57.88 Aligned_cols=61 Identities=8% Similarity=0.000 Sum_probs=47.3
Q ss_pred hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
+...+.....+.+.+|+++++.+.+.+++..+ +|...||.+.|++.|++| +++.|.+.+..
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~igp~~~G~l~~~~g-~~~~f~~~~~~ 360 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYT-VGSLLGPSFTAMLMQNYS-DNLLFIMIASV 360 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 33445556667788888888888888776654 788999999999999999 99988876433
No 114
>PRK10504 putative transporter; Provisional
Probab=97.71 E-value=0.00035 Score=57.55 Aligned_cols=56 Identities=7% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+.+++.....++.+.++.+.+|+++++.+.|+.++..+ +|..+||.+.|.+.|..|
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ-LSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 33444555566777888899999999999999998875 788999999999999876
No 115
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.71 E-value=0.00038 Score=58.30 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=45.8
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH----Hh-----hhhHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ----DR-----VNNWRETALILTAIL 79 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~----D~-----~g~~r~a~~~~~~~~ 79 (132)
++.+++... ..+....+.+++|+++|++++|+.+...+ +|..+++.+.+.+. +. .| ||+.|.+.++..
T Consensus 132 ~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~-~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~g~l~ 208 (476)
T PLN00028 132 FFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGN-LGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVPGLLH 208 (476)
T ss_pred HHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHHHHHH
Confidence 344444433 33455567899999999999999876654 45566655555443 32 46 999999876544
Q ss_pred HH
Q 032830 80 FP 81 (132)
Q Consensus 80 iv 81 (132)
++
T Consensus 209 l~ 210 (476)
T PLN00028 209 II 210 (476)
T ss_pred HH
Confidence 43
No 116
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.69 E-value=0.00044 Score=56.16 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=46.9
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
.+....+.+. +|++|++++|+.++..+ +|..+||++.|++.|.+| +...+++..+..++++
T Consensus 334 ~~~~~~~~~~-~~~~~g~~~g~~~~~~~-lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 334 VPLAAVFPTL-APKHKGAAMSVLNLSAG-LSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHhh-CcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHH
Confidence 3444555554 55689999999998875 677899999999999999 9888887765554443
No 117
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.69 E-value=0.00014 Score=59.82 Aligned_cols=61 Identities=13% Similarity=-0.043 Sum_probs=43.7
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHH------HHHHhhhhHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVG------VLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G------~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+..+..+.+.+|+++|++++|+.....+ +|...+|.+++ ++.|.++ |++.+++.+..++++
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQW-IANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLA 449 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHH
Confidence 4456888999999999999999888765 45566655444 5557778 888887765444433
No 118
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.68 E-value=0.00032 Score=57.63 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH--------HhhhhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ--------DRVNNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~--------D~~g~~r~a~~~~ 75 (132)
++++-++.++..+...+.....+.+++|+++|+++.++...... .|...++.+.+.+. +.+| ||+.|.+.
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~F~i~ 204 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI-GGQLLALLVVVVLQQTLEDAELREWG-WRIPFALG 204 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence 33444466666666777788899999999999999998877653 56677776655443 2467 99999875
Q ss_pred HH
Q 032830 76 TA 77 (132)
Q Consensus 76 ~~ 77 (132)
.+
T Consensus 205 ~~ 206 (432)
T PRK10406 205 AV 206 (432)
T ss_pred HH
Confidence 43
No 119
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.68 E-value=0.00022 Score=58.13 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=53.0
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.++.+++.+...+...+++.|++|+++|+++.|+..... .+|...||.++|++.|. . |+..+.+..
T Consensus 95 r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~-~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~ 160 (393)
T PRK11195 95 YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGST-IAAILLGTVLGGALADP-H-AEAALAVCA 160 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence 345566667777778899999999999999999998875 47889999999999995 4 666665543
No 120
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.68 E-value=0.0002 Score=65.06 Aligned_cols=61 Identities=8% Similarity=-0.132 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
.++++.++.+++.+...+...+++.+++|+++|++++|+...... +|.++||+++|++.+.
T Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTI-VAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 344455566666677777788899999999999999999999875 7889999999999987
No 121
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.67 E-value=3.7e-05 Score=64.39 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=45.1
Q ss_pred cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH---hhhhHHHHH
Q 032830 17 ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD---RVNNWRETA 72 (132)
Q Consensus 17 ~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D---~~g~~r~a~ 72 (132)
...+++-+++.|++++++|+.+++....... +|.++||+|+|++.. ..|++.+++
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~-lGfilGPmIGgyla~f~~~~g~~p~al 193 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFG-LGFILGPMIGGYLAQFSSISGSYPFAL 193 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhh-cchhhcchhhhHHHhhHhhhccCchHH
Confidence 3456778999999999999999999999875 899999999999987 455444444
No 122
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.67 E-value=0.00012 Score=59.49 Aligned_cols=53 Identities=9% Similarity=-0.163 Sum_probs=42.4
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhhcc-cchHHHHHHHHHhhhhHHHHHHHH
Q 032830 21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGD-VPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~-~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+....+.+.+|+++|++++|+.....+ +|. ..||++.|++.|.+| |+..++..
T Consensus 125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~g~~~~~~l~~~~g-~~~~~~~~ 178 (402)
T TIGR00897 125 SFLVWVVYNTKQDNLSSAVGWFWAVYS-IGIGVFGSYYSSYAIPAFG-EMNTLWSA 178 (402)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccc-hHHHHHHH
Confidence 344567788999999999999998865 564 579999999999988 77666544
No 123
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.67 E-value=8.1e-05 Score=57.91 Aligned_cols=62 Identities=16% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+++..++.+++.....+.....+++.+|+++|+++.|+++...+ +|..+||.+.|++.|++|
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSH-AAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 34455566666666667778899999999999999999999876 577899999999999864
No 124
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.66 E-value=0.00011 Score=59.44 Aligned_cols=62 Identities=16% Similarity=-0.045 Sum_probs=45.2
Q ss_pred HHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.+.+.....+...++..+ . +++|+++.|......+ +|.+.||++.|++.|++| ||+.|.+..
T Consensus 104 ~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~s-lG~~~g~~l~g~l~~~~g-~~~~f~~~~ 165 (382)
T TIGR00902 104 FALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGS-AAFIIGSALFGGLIGMFD-EQNILAILT 165 (382)
T ss_pred HHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence 333333344444445443 3 5678999998888765 789999999999999999 999987754
No 125
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.64 E-value=5.6e-05 Score=61.96 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=45.1
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830 24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA 77 (132)
Q Consensus 24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~ 77 (132)
....+.+|+++|+.++|+.+...+ +|.+.+|.+.|.+.|+.|+|++++.+..+
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~-~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGN-IGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhh-hhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 344567899999999999999876 68899999999999999779999987654
No 126
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.63 E-value=0.00042 Score=56.93 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=42.9
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+..+..+.+.+|++.|++++|+.+...+.+.....|.+.+++ |..|+|...+.+..+..+++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence 3445667889999999999999988776654334588888855 66675655555443333333
No 127
>PRK09952 shikimate transporter; Provisional
Probab=97.61 E-value=0.00048 Score=56.89 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH--------hhhhHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD--------RVNNWRETALILTA 77 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D--------~~g~~r~a~~~~~~ 77 (132)
++-++.++..+..++.....+.+++|+++|+...+...... .+|..+++.+.+++.. .+| ||+.|.+..+
T Consensus 130 ~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~-~~G~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~ 207 (438)
T PRK09952 130 TLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY-GVGLLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIV 207 (438)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHH
Confidence 34445666666777777889999999999999999887765 3677777776666653 457 9999987643
No 128
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.61 E-value=0.00024 Score=57.61 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+++.++.++......+..++++.|+++ ++.+|.+.|++++..+ +|..+||.+.|++.|..|
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK-LGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 344455555556666677788888875 5678999999999875 688999999999999865
No 129
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.58 E-value=0.00032 Score=59.81 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCc--hHHHHHHHHHHHhhcccchHHHHHHH--HHhh------------hhH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIR--PLSMAISTVSIHIFGDVPSSPLVGVL--QDRV------------NNW 68 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R--~~a~gi~~l~~~llG~~~gP~i~G~l--~D~~------------g~~ 68 (132)
++.+.+..+......+|..+++.|.+|+++| +.+.++.+...+ +|..+|+.+.|++ .+.+ .+.
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~-lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA-IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 3344444556667778899999999998765 579998888875 6889999988865 2322 137
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 032830 69 RETALILTAILFPAAAIWFIGIFLHSVDKFSED 101 (132)
Q Consensus 69 r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 101 (132)
+++|++..+.++++.++ ..+..+++.+.++
T Consensus 197 ~~~F~i~a~~l~i~~l~---t~~~v~E~~~~~~ 226 (477)
T TIGR01301 197 KSCFLIDIILLAILTYI---ALSAVKENPLIGS 226 (477)
T ss_pred HHHHHHHHHHHHHHHHH---HeeeeeccCCCcc
Confidence 88888765444443332 2233355554333
No 130
>TIGR00898 2A0119 cation transport protein.
Probab=97.56 E-value=0.00036 Score=57.98 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
.+++..++.+++.+...+....++.+++|+++|+.+.++..+.. .+|.+.+|.+.+.+.| ||+.+++.++..++
T Consensus 182 ~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF-SLGLVLLPLVAYFIPD----WRWLQLAVSLPTFL 255 (505)
T ss_pred HHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHH
Confidence 45556667777777777888899999999999999999987765 4677888887665543 99999887544433
No 131
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.55 E-value=0.00039 Score=62.22 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------------hHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------------NWRE 70 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------------~~r~ 70 (132)
.++++-++.+++.+...+.....+.+++|++.|+.++++..+.. .+|.+++|.+.+++...+| +||+
T Consensus 257 ~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~-~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~ 335 (742)
T TIGR01299 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW-MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence 34455566666666677778889999999999999999988775 4677888888777766432 3888
Q ss_pred HHHHHHHHHH
Q 032830 71 TALILTAILF 80 (132)
Q Consensus 71 a~~~~~~~~i 80 (132)
.+++..+.++
T Consensus 336 l~~i~~lp~l 345 (742)
T TIGR01299 336 FVIVCAFPCV 345 (742)
T ss_pred HHHHHHHHHH
Confidence 8777654333
No 132
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.54 E-value=0.00031 Score=57.25 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
.++++++.+++.....+..++..++++|++.|++++|+.+...++ |...+|++.|.+.. | .+..|.+.+...++++
T Consensus 283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~ 358 (368)
T TIGR00903 283 LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYFTFLAILITIAF 358 (368)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHH
Confidence 344555666666666677788899999999999999999999885 55788999888874 4 6666666554444444
Q ss_pred HH
Q 032830 84 AI 85 (132)
Q Consensus 84 ~~ 85 (132)
+.
T Consensus 359 ~~ 360 (368)
T TIGR00903 359 AI 360 (368)
T ss_pred HH
Confidence 33
No 133
>PRK03699 putative transporter; Provisional
Probab=97.53 E-value=0.00082 Score=54.39 Aligned_cols=71 Identities=7% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
+++.....+...+...+..| +.++...++.....+ +|..++|.+.|++.|.+| ++.+++......+++.+.
T Consensus 305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGT-IGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHH
Confidence 33333333444445555555 446777887777654 788999999999999999 999998876555555443
No 134
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.53 E-value=0.00024 Score=59.70 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+.++++=++.+++..........++.+++++++|+.+..+ .... ..|+..+|++.+++.. + |||.+++.....++
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~-~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~ 246 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFF-FVGGLMLPAGAAYITR--D-WRWLFWIISIPSGL 246 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHH-HHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHH
Confidence 4567777888999999999999999999999999999999 4443 4566889999999988 5 99999987654444
Q ss_pred HHHH
Q 032830 82 AAAI 85 (132)
Q Consensus 82 ~~~~ 85 (132)
..+.
T Consensus 247 ~~~~ 250 (521)
T KOG0255|consen 247 FLLL 250 (521)
T ss_pred HHHH
Confidence 4333
No 135
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.52 E-value=0.00067 Score=54.76 Aligned_cols=72 Identities=8% Similarity=-0.197 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
...+-++..+...+.....+.+. |+++|++..++++.....+|...||.+.|++.|++| + ..++.+++..++
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~ 370 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAA 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHH
Confidence 34444444455556666677777 999999999998765555788999999999999998 6 555555444333
No 136
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.50 E-value=0.00027 Score=59.41 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.+-.+.......|....+++.+|++.+++..++.+...+ +|..+|+.++|++.|++|
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~-lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH-LGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 344555566677788999999999999999999999976 678999999999999876
No 137
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.49 E-value=0.0011 Score=55.08 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=46.1
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
.+......+.+.+|++.|+++.++++....-+|..+|..+.|++.|++| -+..+..
T Consensus 318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g-~~~~~~~ 373 (400)
T PF03825_consen 318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG-ARGMFDW 373 (400)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhhhhH
Confidence 3455556778999999999999999998777899999999999999987 5554433
No 138
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.49 E-value=0.0005 Score=62.91 Aligned_cols=73 Identities=14% Similarity=-0.094 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
++..++.+++.++...+.++++++.+|+++||+++|+.+++. .+|..+|++++|.+.|...++...+.++.+.
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~-~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN-AAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344455666777777888999999999999999999999886 4677899999999987543377666655433
No 139
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.47 E-value=0.00072 Score=58.20 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+.+++.++.+++.++..+.-.+++-+++|+++...|.++.++..|+ ...+||.++|.+...+| ..++|.+.++..++
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni-ar~iGPalgG~Lva~~G-~~~~f~inalsfl~ 181 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI-ARIIGPALGGILVAFFG-AAAAFLINALSFLI 181 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH-HHhccchHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4455666777777888788889999999999999999999998874 56889999999999999 88888776544443
No 140
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.46 E-value=0.00098 Score=52.84 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=48.2
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-HHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-WRETALILTA 77 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-~r~a~~~~~~ 77 (132)
++.++..+...+.....+.+..| ++|+++++++....+ +|..++|.+.+.+.|..+. ||+.|....+
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~ 162 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALM-GGAALAAAATVPLAQHSGGHWQQALAWWAL 162 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444444444445556677775 689999999988754 7889999999999988653 9998876543
No 141
>PTZ00207 hypothetical protein; Provisional
Probab=97.45 E-value=0.00053 Score=59.98 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhccc-chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDV-PSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~-~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
++..++.++..+...+.....+.+++| ++||+++|+.....+ +|.+ .+|+..+++.| + |++.|++.+++.++.+
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~g-LGsaI~~~l~~~l~~~--~-~~~~fl~l~vl~~vv~ 198 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTG-LGSAILGSIQLAFFSD--N-TSAYFFFLMSFALVVG 198 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--h-HHHHHHHHHHHHHHHH
Confidence 334445555555555666677888886 679999999999876 5544 57777776654 4 7777777654444433
Q ss_pred H
Q 032830 84 A 84 (132)
Q Consensus 84 ~ 84 (132)
+
T Consensus 199 l 199 (591)
T PTZ00207 199 I 199 (591)
T ss_pred H
Confidence 3
No 142
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00035 Score=58.90 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=60.4
Q ss_pred HHHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
+=+..++..++...+++.|.+|. ++|++++|+...... +|-.+||+++|.+=|..| .+..|.+++.++++.+.+
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfis-lG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFIS-LGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGAL 242 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHh-ccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHH
Confidence 33455566778888999999996 668999999988875 899999999999999999 999998887666555444
No 143
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.40 E-value=0.0024 Score=51.76 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=45.1
Q ss_pred HHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 14 LVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 14 ~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+.....+..+...+.++..+..++..++++...+ +|...++++.|++.|++| |+..|....+..+++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~ 382 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSATQYALLSALAS-VGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPG 382 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 3344445556666666666666677776665543 455555668999999999 999888876555444
No 144
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.37 E-value=0.0017 Score=52.90 Aligned_cols=75 Identities=17% Similarity=0.042 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCC-chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSI-RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~-R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++++++.+++.....++.+..+++..|++. +|++.++.++..+ +|..++..+.+ +.|.+| .+..+.+..+..+++
T Consensus 297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNEN-LAMLLMLGLYS-LLVKLG-VPVVAVIVGFGLLVA 372 (393)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHH-HHHHHHHHHHH-HHHHcC-CCHHHHHHHHHHHHH
Confidence 344445566666666788888888766654 7999999998865 67788998888 558888 888887765544433
No 145
>TIGR00898 2A0119 cation transport protein.
Probab=97.36 E-value=0.00073 Score=56.15 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++.++.+++.....+..+....+.+|++.|++++|+.++..+ +|.+++|.+.| + +..+ +...+.+.++..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~p~i~~-~-~~~~-~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 415 ALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR-VGSIISPFLVY-L-GEKW-LFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH-HHHHHHhHHHH-H-HHHH-HhhHHHHHHHHHHHH
Confidence 344455555555566677788899999999999999998875 67799999999 4 4445 555665554444443
No 146
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.35 E-value=0.0019 Score=52.03 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=44.8
Q ss_pred hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+...........+..+++.++...+...... .+|...|+...|++.|++| ||..|++.++..++
T Consensus 112 a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~-~lG~~~g~~~~~~l~~~~g-w~~~f~~~a~l~~~ 175 (390)
T TIGR02718 112 ATQDIATDGMAAEHFNGRTLAKGNAVQIAGV-MIGFFGGGAGTLVLFGKFG-QRPAFLLVACVPLA 175 (390)
T ss_pred HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 3333334445556666666677777776654 4678888888899999999 99999987655443
No 147
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.34 E-value=0.0014 Score=55.08 Aligned_cols=79 Identities=4% Similarity=-0.114 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW 86 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~ 86 (132)
..++.++.-....+..++.+.+..|++.||+.+|++.+.. .+|..+|+.+.....|..+ |.+.+..++...++.++++
T Consensus 387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~-~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ-AMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence 3334444444455667788899999999999999999876 4788888888888777767 8888877766555555544
Q ss_pred H
Q 032830 87 F 87 (132)
Q Consensus 87 ~ 87 (132)
+
T Consensus 465 ~ 465 (475)
T TIGR00924 465 A 465 (475)
T ss_pred H
Confidence 3
No 148
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.30 E-value=0.0029 Score=50.97 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=35.8
Q ss_pred hHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 26 CLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 26 i~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
..+..|++.++.+. .+... .+|.++||.+.|++.|+.++|++.+....+...++
T Consensus 315 ~~~~~~~~~~~~~~--~~~~~-~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~ 368 (382)
T PRK10091 315 LQNAKGGELLGAAG--GQIAF-NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAA 368 (382)
T ss_pred HHhCCcchHHHHHH--HHHHH-HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHH
Confidence 33444455555543 34443 47889999999999997655999998875444333
No 149
>PRK10054 putative transporter; Provisional
Probab=97.28 E-value=0.0018 Score=52.85 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=41.7
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+.....+.+..|++.|+++.+..++. .+|..+||+++|++.|++| ....+.+.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~~~--~~G~~~Gp~~~G~l~~~~g-~~~~~~~~ 369 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQSLG--WLGAAINPLVSGVILTTLP-PWSLFVIL 369 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHHHH--HHHHHHHHHHHHHHHHHcC-hhhHHHHH
Confidence 34445677899999999999876643 4788999999999999998 66666553
No 150
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.21 E-value=0.00087 Score=56.24 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=38.5
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
.+..+....+.+|++.|+++.|+.+.+.+ +|..++|.++|++.|..
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGK-AGAIIGQFGFLYLAQHG 455 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhh-hHHHHHHHHhhhhhccc
Confidence 34455667899999999999999998876 57799999999999953
No 151
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.21 E-value=0.0017 Score=54.22 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=41.6
Q ss_pred HHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 9 AVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.+.++......+..++++.|+++ .+..|...|++++..+ +|..+|+.+.|++.|..|
T Consensus 332 ~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K-~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 332 ILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK-GGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 33444445555666778889966 3445678899888876 688999999999998764
No 152
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.19 E-value=0.0037 Score=50.96 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=48.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
+.++......+.....+++.+| ++++++.+++....+ +|..+||.+.|++.|+.| ++..+..+.++.++.
T Consensus 314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQ-LANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHH
Confidence 3343434444555557777887 556777777766654 788999999999999998 888877765444333
No 153
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.15 E-value=0.0034 Score=50.71 Aligned_cols=48 Identities=8% Similarity=-0.232 Sum_probs=35.6
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR 69 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r 69 (132)
++.+.... ..++++|+++.+++++... +|..+|+.+.|++-|..+++.
T Consensus 328 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 328 AGLYRLTL-FSSDVSKGTVSAAMGMLSM-LIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred hhHHHHHh-hhccccccHHHHHHHHHHH-HHHHHHHHHHHhcccCCchHH
Confidence 33334333 3456899999999998864 677899999999999888343
No 154
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.15 E-value=0.0031 Score=50.21 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.+.+.+++.+...+...+..++..|++ .+++.++..+ ..+|.+++|++.|++.|++| .+++|++.
T Consensus 236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~~--~~~Gg~i~P~l~G~lad~~g-~~~a~~v~ 300 (310)
T TIGR01272 236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILCL--AIVGGAIVPLLQGSLADCLG-IQLAFALP 300 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHH--HHhcchHHHHHHHHHHHhcc-chHHHHHH
Confidence 444566777777777788888887764 5677777543 45788999999999999999 99998754
No 155
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.11 E-value=0.0023 Score=56.19 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++..++.++. +.........+.+.+|.+.|....++.... .+....+||.+...+..+.+ |||.|++......++
T Consensus 135 iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~-~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 135 IAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIP-FIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHH-HHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHH
Confidence 3444444443 222233455689999999999888776654 34444567877766655545 999999875444433
No 156
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.05 E-value=0.0043 Score=52.83 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccc----hHHHHHH-HHH-------------h
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVP----SSPLVGV-LQD-------------R 64 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~----gP~i~G~-l~D-------------~ 64 (132)
.++++-++.++. ....++....+.+++|+++||+++|+.....+ +|..+ .|.+.+. +.+ .
T Consensus 130 ~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~-~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~ 207 (462)
T PRK15034 130 IFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN-LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV 207 (462)
T ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence 344445555554 55667788899999999999999999963332 45443 4443321 222 3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 032830 65 VNNWRETALILTAILFPAA 83 (132)
Q Consensus 65 ~g~~r~a~~~~~~~~iv~~ 83 (132)
.+ ||++..+..+..++.+
T Consensus 208 ~~-~~~~~~~~~~~~iv~~ 225 (462)
T PRK15034 208 MS-LANAAWIWVPLLAIAT 225 (462)
T ss_pred HH-HHHHHHHHHHHHHHHH
Confidence 34 7777776655444443
No 157
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.05 E-value=0.0041 Score=50.09 Aligned_cols=65 Identities=8% Similarity=-0.203 Sum_probs=42.6
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
++.++......+.....+.+. +++++++..++++...+..|..+||.+.|++.|++| + ..++..+
T Consensus 301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~ 365 (382)
T PRK11128 301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMA 365 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHH
Confidence 333333333334444555554 666678889988755556777899999999999998 5 3444443
No 158
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.03 E-value=0.0022 Score=51.96 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
++++.+.+..++.++--+.......|.+++++ |.+....+.+..| +|..+++.+.+++-|+.| |.+.|.++++..
T Consensus 35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in-~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~ 112 (372)
T PF00854_consen 35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN-IGSLFSPTLVPYIQQNYG-WFLGFGIPAIGM 112 (372)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHCS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh-hhhHhhcccchhhccccc-hhhhhhHHHHHH
Confidence 45566666677777777888889999999763 4455556677777 687889999999999999 999999988777
Q ss_pred HHHHHHHHH
Q 032830 80 FPAAAIWFI 88 (132)
Q Consensus 80 iv~~~~~~~ 88 (132)
+++.+++..
T Consensus 113 ~~~~~~f~~ 121 (372)
T PF00854_consen 113 LLALIVFLS 121 (372)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 777655443
No 159
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.01 E-value=0.0026 Score=51.33 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=42.2
Q ss_pred HhHhhcCCCCchHHHHH-HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 25 ICLHCVKPSIRPLSMAI-STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 25 ii~~~vp~~~R~~a~gi-~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
...+..|++.++++.++ ++... .+|..++|++.|++.|.+| ++..|.+.++..++++
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~-~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAK-QLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFT 388 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHH-HHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHH
Confidence 34555677777776665 44444 4788999999999999999 9999998765554443
No 160
>PRK09848 glucuronide transporter; Provisional
Probab=97.01 E-value=0.003 Score=52.03 Aligned_cols=59 Identities=10% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCC-------CchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPS-------IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~-------~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.+.+.++......++.+++..|..|.+ ++|...|++++..+ +|..+|+.+.|.+.+..|
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k-lg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK-CGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 344555566666777788888988754 45999999999865 788999999999988654
No 161
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.90 E-value=0.0035 Score=50.77 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHH-------hhhhHHHHHHHHHHHHH
Q 032830 14 LVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD-------RVNNWRETALILTAILF 80 (132)
Q Consensus 14 ~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D-------~~g~~r~a~~~~~~~~i 80 (132)
+......|..++..+.++ +++|++..++.....+ +|..+++.+.+.+.. ..+ ||+.+.+.+++.+
T Consensus 112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~-~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i~~~l~~ 184 (437)
T TIGR00792 112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT-LGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALVLALIGV 184 (437)
T ss_pred HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccccc-HHHHHHHHHHHHH
Confidence 333444566677777774 6899999998877654 565666666555553 345 9988877654433
No 162
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.85 E-value=0.0084 Score=50.85 Aligned_cols=83 Identities=4% Similarity=-0.090 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH------h---hhhHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD------R---VNNWRETALILT 76 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D------~---~g~~r~a~~~~~ 76 (132)
...++.++.-....++.+..+++..|+++++.++|++.+..+ +|..+|..+.+.... - .+++.+.|...+
T Consensus 384 ~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~-ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 462 (489)
T PRK10207 384 LVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA-AAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIG 462 (489)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHH
Confidence 344455555566667788999999999999999999998865 566666665544421 0 112556666666
Q ss_pred HHHHHHHHHHHHH
Q 032830 77 AILFPAAAIWFIG 89 (132)
Q Consensus 77 ~~~iv~~~~~~~~ 89 (132)
...++.++++++.
T Consensus 463 ~~~~~~~v~~~~~ 475 (489)
T PRK10207 463 LVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555543
No 163
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0044 Score=53.23 Aligned_cols=68 Identities=25% Similarity=0.301 Sum_probs=51.4
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
++.++..++...|+..++...+ +++|+.|+|+...... +|..+=|++.-++.|.+| ||+++++.....
T Consensus 143 vi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG-~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~ 210 (509)
T KOG2504|consen 143 VIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTG-VGTVVFPPLLKYLLSKYG-WRGALLIFGGIS 210 (509)
T ss_pred HHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCC-cceeeHHHHHHHHHHHhC-cHHHHHHHHHHH
Confidence 3455555666666666666555 5679999999988865 677888888899999999 999999875443
No 164
>PRK10133 L-fucose transporter; Provisional
Probab=96.81 E-value=0.0077 Score=50.08 Aligned_cols=58 Identities=12% Similarity=0.000 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ 62 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~ 62 (132)
+++..++.++..+...+..+..+.++.|+++|...+++.+.... +|..+||.+++.+.
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~-~G~~~g~~~g~~l~ 177 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS-FGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455666666677777778888888777777778888887754 68888998877654
No 165
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0049 Score=51.87 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.+....+.+++.+..++.++++-.+..| ++-+.+.++..+ .++|+++-|++.|++.|+.| ....+...+
T Consensus 327 ~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m--aivGGAiiP~l~G~i~d~~g-~~~~~~~~p 395 (422)
T COG0738 327 ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM--AIVGGAIIPPLQGVIADMFG-IQLTFLIVP 395 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee--heecchHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 3445667788888889999999999999 555555555444 36899999999999999999 666655443
No 166
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.018 Score=48.29 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=51.3
Q ss_pred hHHHHHhHhhcC--CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVK--PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 87 (132)
Q Consensus 20 ~~~~~ii~~~vp--~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~ 87 (132)
+.......+..+ |+.+..+.+++....| +|...|..++|.+.|++| +....+......+++.++..
T Consensus 316 ~~~~~~~~~~a~~~p~~~~~a~sl~~aa~n-lgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 316 PALQGLQTRLARLAPDAADLAGSLNVAAFN-LGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLAL 383 (394)
T ss_pred hhhhHHHHHhcccCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHH
Confidence 334445555555 6889999999999988 799999999999999988 99998887666555554443
No 167
>PRK11043 putative transporter; Provisional
Probab=96.71 E-value=0.017 Score=46.55 Aligned_cols=47 Identities=15% Similarity=-0.143 Sum_probs=32.9
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
..+..+....+..| ++++++.|+++.... .+...++.+.|.+.|...
T Consensus 313 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~-~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 313 IYPIVVAQALRPFP-QATGKAAALQNTLQL-GLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHhhhCc-ccChHHHHHHHHHHH-HHHHHHHHHHHHccCCCh
Confidence 33334444445555 679999999998754 455788888999988644
No 168
>TIGR00895 2A0115 benzoate transport.
Probab=96.68 E-value=0.0025 Score=50.14 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVL 61 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l 61 (132)
++..++.+++.....+..+..+.+.+|+++|+++.|+...+.+ +|..+||.+.|++
T Consensus 342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~g~~~~G~l 397 (398)
T TIGR00895 342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGR-LGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHhHHhc
Confidence 3444555666666677788899999999999999999998875 6779999999976
No 169
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.67 E-value=0.017 Score=49.28 Aligned_cols=90 Identities=9% Similarity=0.001 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCC---------------------CCchHHHHHHHHHHHhhcccchHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKP---------------------SIRPLSMAISTVSIHIFGDVPSSPLVGVL 61 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~---------------------~~R~~a~gi~~l~~~llG~~~gP~i~G~l 61 (132)
+|++.+.+..++.....++++-++.+.+|+ ++-|.++|+...+- .+|+..-|++.|+.
T Consensus 347 ~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G-~~Ggf~~p~~~g~~ 425 (462)
T PRK15034 347 AFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIG-AVGGFFIPQAFGMS 425 (462)
T ss_pred HHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHH-HcccchhhHHHHHH
Confidence 344444444455566677778788788874 15678888887764 57778899999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830 62 QDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD 96 (132)
Q Consensus 62 ~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~ 96 (132)
.|.+|++..+|++..+..+++.+ +.+++|.++
T Consensus 426 ~~~~g~~~~~~~~~~~~~~~~~~---~~w~~y~r~ 457 (462)
T PRK15034 426 LNMTGSPVGAMKVFLIFYIVCVL---LTWLVYGRR 457 (462)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHH---HHHHHhccC
Confidence 99999898888876555444433 344555333
No 170
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.67 E-value=0.0076 Score=48.45 Aligned_cols=60 Identities=17% Similarity=0.014 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
++..++.++..+...+.....+.+..++++|+++++++....+ +|...||.+.+.+.+..
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYY-LGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccc
Confidence 3444455555444455556677788999999999999988865 78899999999988764
No 171
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.66 E-value=0.015 Score=52.98 Aligned_cols=71 Identities=11% Similarity=0.001 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-hHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-NWRETALILTA 77 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-~~r~a~~~~~~ 77 (132)
++++++.+++..+..++.++.+++.+|++.||+++|+.+++.+ +|...++.+.+.+.. .+ .+...+.+.+.
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~-lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQN-VGMLLFLALTTLFSG-LGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHHH-hccCHHHHHHHHHH
Confidence 3444555556666667788899999999999999999998875 565667776665544 33 15555554443
No 172
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0049 Score=50.69 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=39.9
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN 67 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~ 67 (132)
.|..+..++|.++-|++.|+...+.| +|.+..|++.|.+.|+-|+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqN-Lgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQN-LGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHh-hhhhHHhhhhheeecCCCc
Confidence 55677889999999999999999887 7999999999999998664
No 173
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.44 E-value=0.023 Score=46.86 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-----hhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-----NNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-----g~~r~a~~~~ 75 (132)
.+.++.+.+++.+..++..+.+..+..+++.+..+.++.+. ++|++..|++.|++.|.. |+.+.+|.+.
T Consensus 324 ~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~---~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 324 GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA---IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 34556677777777788888999999998766555555443 478899999999999965 3477777653
No 174
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.42 E-value=0.0068 Score=49.35 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
++++.+.|......+ +|..+||++.|++.|. + |++.|++.++..
T Consensus 137 ~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~ 180 (420)
T PRK09528 137 RRSGFEYGRARMWGS-LGWALCAFIAGILFNI-N-PQINFWLGSGSA 180 (420)
T ss_pred hhccccchhhHHhhh-HHHHHHHHHHHHHHhc-C-chHhHHHHHHHH
Confidence 456667777666654 6889999999999884 6 998887764333
No 175
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.37 E-value=0.031 Score=47.43 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=46.1
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-------------hhHHHHHHH
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-------------NNWRETALI 74 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-------------g~~r~a~~~ 74 (132)
.++.++.-....+...+.+.+..|++.||+++|++.+.. +.|+.+.|.+.+.. +.+.+.|..
T Consensus 389 ~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~-----a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 463 (500)
T PRK09584 389 YGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTT-----AGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQ 463 (500)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccccccccchhhhhhHHHHHHH
Confidence 333444444455667788999999999999999887664 23445555554321 115677776
Q ss_pred HHHHHHHHHHHHH
Q 032830 75 LTAILFPAAAIWF 87 (132)
Q Consensus 75 ~~~~~iv~~~~~~ 87 (132)
.++..++.+++++
T Consensus 464 ~~~~~~~~a~~~~ 476 (500)
T PRK09584 464 IGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 6655544444443
No 176
>PRK10133 L-fucose transporter; Provisional
Probab=96.27 E-value=0.032 Score=46.42 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
..+.+.+++.+...++.++..++..|++ .+.+.++..+ ..+|..++|.+.|++.|..|+.+.+|.+.
T Consensus 352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~--~~~g~~~~~~i~G~l~~~~g~~~~~~~v~ 418 (438)
T PRK10133 352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM--TIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH--HhccchHHHHHHHHHHHhccchHHHHHHH
Confidence 4555677777888888888888887763 6778887764 34678999999999999986578888754
No 177
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.25 E-value=0.0096 Score=50.40 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=60.5
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
.+.+++.+..++.+=+.+.+.+||++-+...|+|++.-+ .....||.+++.++|.+|+-|..+....+++.++.++
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgr-a~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGR-AASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhh-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 344555555566677899999999999999999999866 6789999999999999999999888776555555433
No 178
>PRK09669 putative symporter YagG; Provisional
Probab=96.24 E-value=0.025 Score=46.60 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
++..++.++......+..++++.|+++ .++.|...|++++..+ +|.++||.+.|++.|..|
T Consensus 323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~k-lg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIK-LGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 334445555666666667788888886 3445678888888876 788999999999999764
No 179
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0047 Score=53.07 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=58.2
Q ss_pred hcchhHHHHHhHhhcCC--CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVKP--SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp~--~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
..--+....++.++.|+ .+|-...+++.+..| +|...+|++.|++.+..| |+..|...++....+.+.+.+..
T Consensus 132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN-iGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN-IGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred ccccccHHHHHHHhcCCCCcccCCCccEEEEEee-hHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 33345666788899996 457777788888887 678999999999999999 99999998888888776666544
No 180
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.12 E-value=0.011 Score=49.63 Aligned_cols=76 Identities=20% Similarity=0.100 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH--hhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH--IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~--llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.+++++..++.+.....+-+...+..+ ++++...++.++.-. .+|..+|+.+.|.+.|+++ |+..|++.+...++.
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~-~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL-TRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHH
Confidence 345667777777777888888888888 555443333322221 2688999999999999999 999998875444333
No 181
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.89 E-value=0.06 Score=45.37 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=51.3
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 98 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~ 98 (132)
.+..--+.+.+|++..++...+......-+|..+.+++.|++-|++| .+.++++++.+. .++..++.+..++++.
T Consensus 331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv---~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIV---LPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHH---HHHHHHheeeecCCCc
Confidence 44455677899999988888886544455778888999999999999 999998875432 2333344555555543
No 182
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.88 E-value=0.016 Score=46.79 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 35 RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 35 R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
++...+...... .+|.++||.+.|.+.+. + |++.|++.+...++.
T Consensus 131 ~~~~~g~~~~~~-~~g~~~g~~~~g~l~~~-~-~~~~f~~~~~~~~~~ 175 (396)
T TIGR00882 131 SNFEYGKARMFG-CVGWALCASIAGILFSI-D-PQIVFWLGSGFALIL 175 (396)
T ss_pred cccccchhhhhc-ccHHHHHHHHHhhhhcc-C-chHHHHHHHHHHHHH
Confidence 344556555554 47889999999988774 7 999998775444333
No 183
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.72 E-value=0.06 Score=47.73 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCC---chHHHHHHHHHHHhhcccchHHHHHHHHHhh-------hhHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSI---RPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-------NNWRETAL 73 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~---R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-------g~~r~a~~ 73 (132)
.++.+++...+....-+...+...|..++++ |-....++.++.| +|..+++++.+++.+.. + |..+|.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iN-iGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~ 165 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAIN-AGSLISTIITPILRGDVGCFGCQDC-YPLAFG 165 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccCcc-hHHHHH
Confidence 3445555555555566667777788887643 5667777777777 57788999999998654 4 999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032830 74 ILTAILFPAAAIWFIGI 90 (132)
Q Consensus 74 ~~~~~~iv~~~~~~~~~ 90 (132)
++.++.+++.+++....
T Consensus 166 i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 166 VPAILMILALIVFMAGS 182 (654)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88777777766655433
No 184
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.66 E-value=0.025 Score=46.39 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
...+.++..+...++.....++.+|+++|++++|++++..+ +|..+|+.+.|.+.|+..
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQ-LGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34455555555566777778888999999999999999864 788999999999988644
No 185
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.092 Score=44.36 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
.++..+.....+.....+.++.++-+.+|+ +-+.+.|+...+-+ +|...=|...|.+-|.+|++..+|++.....+++
T Consensus 316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~-lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a 393 (417)
T COG2223 316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGG-LGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVA 393 (417)
T ss_pred HHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcc-ccccchhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 455555666666777777788887777776 68888998887754 6667789999999999999999998875444444
Q ss_pred HHHHHHHHHHhhccc
Q 032830 83 AAIWFIGIFLHSVDK 97 (132)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (132)
. ...++.|++++
T Consensus 394 ~---v~~~~~y~r~~ 405 (417)
T COG2223 394 L---VLTWALYARRR 405 (417)
T ss_pred H---HHHHHHHHhcc
Confidence 3 33445555444
No 186
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.52 E-value=0.054 Score=47.67 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ 62 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~ 62 (132)
+.+.++++++......+...+.+-.+|+++-+.++|+.... +.+|+.+|..++..+-
T Consensus 409 i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~-R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 409 IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSI-RSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHH
Confidence 45566777777777788888888999999999999988776 6678788888775543
No 187
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.016 Score=49.37 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH-Hh-hhhHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ-DR-VNNWRETALILTAILF 80 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~-D~-~g~~r~a~~~~~~~~i 80 (132)
++++++.++..+.+...+..+.-.+|. .|+.-+..+|+.+++..+ ...++|.++|.+. |. ..+|++.|.+.+++.+
T Consensus 360 ~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~ 437 (466)
T KOG2532|consen 360 LAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILI 437 (466)
T ss_pred HHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHH
Confidence 455566666555555555555555554 567799999999998764 5589999999999 53 3459999999887777
Q ss_pred HHHHHHH
Q 032830 81 PAAAIWF 87 (132)
Q Consensus 81 v~~~~~~ 87 (132)
++.++|.
T Consensus 438 ~~~i~f~ 444 (466)
T KOG2532|consen 438 VGNIIFL 444 (466)
T ss_pred Hhchhee
Confidence 7775544
No 188
>PRK11462 putative transporter; Provisional
Probab=95.41 E-value=0.12 Score=43.31 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=37.0
Q ss_pred HHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 11 GELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.+++.....+..++++.|+++ .+.-|...+.+++..+ +|.++|+.+.|++.+..|
T Consensus 328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~K-lg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLK-LGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 343333334444677888877 3344566677778765 788999999999988753
No 189
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=95.33 E-value=0.037 Score=46.52 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
+...++.++......++....+++.+|+++++.+.+++++..+ +|..+|+.+.|.+.+.
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE-LGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445566666667777788888999999999999999998865 7889999999998764
No 190
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.24 E-value=0.17 Score=40.61 Aligned_cols=41 Identities=15% Similarity=-0.019 Sum_probs=24.8
Q ss_pred HHhHhhcCCCCc-hHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHH
Q 032830 24 FICLHCVKPSIR-PLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRE 70 (132)
Q Consensus 24 ~ii~~~vp~~~R-~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~ 70 (132)
...+...|.++| +.+.+++. ++...||.+.|++.|++| +..
T Consensus 313 ~~~~~~~~~~~~~g~~~~~~~-----~~~~~g~~~~~~l~~~~g-~~~ 354 (392)
T PRK10473 313 AMSQALGPFSLRAGVASSTLG-----IAQVCGSSLWIWLAAVLG-ISA 354 (392)
T ss_pred HHHHHhccCcccccHHHHHHH-----HHHHHHHHHHHHHHHHhc-cch
Confidence 344556665444 44444433 344667888889999888 544
No 191
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.078 Score=44.39 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=40.9
Q ss_pred hcchhHHHHHhH-hhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 16 FATQGPVNFICL-HCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 16 ~~~~~~~~~ii~-~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
....+-....+. |...+++-+.-+|+.+-+-+++. +.||.++|++-|.+|||+..+....
T Consensus 311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~lhDa~gsw~~~~~~l~ 371 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFLHDATGSWSAPLVLLA 371 (395)
T ss_pred chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHHHHhcCChHHHHHHHH
Confidence 333444444333 44445666666666666556665 7899999999999999999988753
No 192
>PRK09669 putative symporter YagG; Provisional
Probab=95.06 E-value=0.19 Score=41.40 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=38.7
Q ss_pred HHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------hHHHHHHHHH
Q 032830 12 ELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------NWRETALILT 76 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------~~r~a~~~~~ 76 (132)
..+......|..++..++.+ +++|.+..+......+ +|..+++.+...+...++ .|+..+.+.+
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~-~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSF-IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 33444555677778888874 5889988887776654 555666655444444332 1666655544
No 193
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=95.05 E-value=0.16 Score=39.93 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=32.5
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
.+.......+..| ++|+++.++++......|...+|+ .|.+.|..+ |...+..
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~-~~~~~~~ 370 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTA-WPMSLSC 370 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccCh-HHHHHHH
Confidence 3344445555555 689999999988876566555554 565555444 5544443
No 194
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.02 E-value=0.00037 Score=56.92 Aligned_cols=72 Identities=8% Similarity=-0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH---hhhhHHHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD---RVNNWRETALILTAIL 79 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D---~~g~~r~a~~~~~~~~ 79 (132)
+.-++.++..+.........+.+..|++.|+...++..... .+|..++..+.-.+.+ ..+ ||+.+.+..+..
T Consensus 107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~~ 181 (451)
T PF00083_consen 107 IGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW-ALGILLASLIGYIVSYYSDNWG-WRILLIFGAIPS 181 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cccccccccccc
Confidence 33445566666667777788899999999999999988875 4676666655322222 223 999988764333
No 195
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=94.92 E-value=0.038 Score=43.73 Aligned_cols=57 Identities=16% Similarity=-0.009 Sum_probs=37.5
Q ss_pred HHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHH
Q 032830 12 ELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWR 69 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r 69 (132)
+++.....+.....+.+.. ++++++.+.++.+...+ +|..+||.+.|++.|++|+|.
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGY-LLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccC
Confidence 3333333333444444444 45677888888776654 566889999999999988654
No 196
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.90 E-value=0.17 Score=43.51 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=28.6
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
+...+++.+..|++.||+.+|++.+... ..||.+.|++.+
T Consensus 396 Pvgls~~~~laP~~~~g~~mg~w~l~~~----~~~~~~~g~~~~ 435 (493)
T PRK15462 396 PVAMSQITRIEIPGVTGVLTGIYMLLSG----AIANYLAGVIAD 435 (493)
T ss_pred hHHHHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4466789999999999999999966432 344555555444
No 197
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.012 Score=50.70 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHh-cchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH-----hhhhHHHHHHHHHHH
Q 032830 5 LALFAVGELLVF-ATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD-----RVNNWRETALILTAI 78 (132)
Q Consensus 5 ~~~~~l~~~~~~-~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D-----~~g~~r~a~~~~~~~ 78 (132)
+++..+..|+.. .+.+....+...++|.+.||+.-|+....- -+|.++|...++++.| ..+ .+++|++....
T Consensus 409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G-K~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~ 486 (538)
T KOG0252|consen 409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG-KAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGC 486 (538)
T ss_pred eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc-cchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHH
Confidence 344444444443 334445567889999999999999988764 5788999999999999 567 89999887655
Q ss_pred HHHHHHH
Q 032830 79 LFPAAAI 85 (132)
Q Consensus 79 ~iv~~~~ 85 (132)
++++.++
T Consensus 487 ~~~gi~~ 493 (538)
T KOG0252|consen 487 MLLGILF 493 (538)
T ss_pred HHHhHhe
Confidence 5555443
No 198
>PF13347 MFS_2: MFS/sugar transport protein
Probab=94.77 E-value=0.096 Score=42.92 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh------hHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN------NWRETALILT 76 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g------~~r~a~~~~~ 76 (132)
++..++..++......|..++..++.+ +++|....+...... .+|..+...+.+.+.+.+| +|++...+.+
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~-~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFS-MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHH-HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 334444466666777888899999998 579999999888875 4676666777777776654 3666666553
No 199
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=94.76 E-value=0.05 Score=46.36 Aligned_cols=59 Identities=17% Similarity=-0.001 Sum_probs=46.2
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
..+.+++.+.|+...+.|....|+...... .+...+|.+.+.+....| .-..+++..+.
T Consensus 129 ~~s~~~a~vadis~~~~R~~~~gll~~~~~-~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~ 187 (463)
T KOG2816|consen 129 IFSVGFAYVADISSEEERSSSIGLLSGTFG-AGLVIGPALGGYLVKFLG-IALVFLIAAAS 187 (463)
T ss_pred hhhhhhhheeeccchhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 346677888999999999999999988665 566889999999998877 55555554433
No 200
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.70 E-value=0.23 Score=41.53 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+..+.....+-|...++.++.|+..-|+..|+.....| +|...+..++..+.+.+|
T Consensus 327 l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~N-lg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 327 LEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSN-LGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 34555566677888899999999999999999999987 677888888888888764
No 201
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.63 E-value=0.23 Score=41.99 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
+|++.+++.+.....-.+..|..+...-|++..+.-+.+...... +|.+.||+++++++++
T Consensus 106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~-lGa~~gp~~g~~lils 166 (422)
T COG0738 106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG-LGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHh
Confidence 566677777777777788899999999999888888888888754 7889999999999994
No 202
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=94.58 E-value=0.32 Score=38.96 Aligned_cols=51 Identities=8% Similarity=-0.151 Sum_probs=36.1
Q ss_pred HHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 12 ELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 12 ~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
++......+......++.+| ++++.+.++.+...+ +|..+||.+.|.+.++
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQN-IGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHH-HHHHHHHHHHHHccCC
Confidence 33334444556666777776 578999999988765 6778888888877655
No 203
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.081 Score=45.50 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH-HHHHHhhhhHHHHHHHHHH
Q 032830 9 AVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV-GVLQDRVNNWRETALILTA 77 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~-G~l~D~~g~~r~a~~~~~~ 77 (132)
++.+.......+....-++++.|++.||....+..+... +|..+|-+++ -.+.+.-..|.+.+....+
T Consensus 124 ~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~-~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 124 LIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV-IGILLGQVLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH-HHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence 344445555556666778899999999999998887764 5655553322 1122222239999887643
No 204
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.14 Score=43.55 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=52.1
Q ss_pred hcchhHHHHHhHhhcCCC---CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVKPS---IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 87 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp~~---~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~ 87 (132)
-....|....+.|....+ -=|...++..... .+|...||.++|.+....| ++|...+.+...++-+-++.
T Consensus 379 dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~-sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 379 DASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAF-SLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred HHHHhhhhHHhcchhhccccceeeeHHHHHHHHH-HHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHH
Confidence 334455555555655555 5678888888876 4799999999999999999 99999988776666555444
No 205
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=94.28 E-value=0.053 Score=41.88 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSS 55 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP 55 (132)
+....+.+++.....+.....+++.+|+++|+++.|+.+...+ +|..+||
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS-LGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHCC
Confidence 3345556666666778888999999999999999999998876 5667776
No 206
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.21 E-value=0.15 Score=46.00 Aligned_cols=60 Identities=23% Similarity=0.162 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcchhHHH----HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 4 FLALFAVGELLVFATQGPVN----FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~----~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
.+++++++.++.+.+.+|.+ ..+=|-+.++.-+.-.|+...+ .++|+++|-++++++...
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~-~~lGPaiGfllgS~~l~l 299 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM-AILGPAIGFLLGSFCLKL 299 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH-HHhhhHHHHHHHHHHHHe
Confidence 45566777777777777765 3555778888888889988765 589999888888877653
No 207
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.13 Score=43.53 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=46.9
Q ss_pred hcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 032830 16 FATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN--NWRETALILTAILFPAAAIW 86 (132)
Q Consensus 16 ~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g--~~r~a~~~~~~~~iv~~~~~ 86 (132)
....+.....+..++||+++|.|+|++. .-| +|......+.-+++-..| .|+.+..+-.+.+++..+.+
T Consensus 119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN-~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~ 189 (417)
T COG2223 119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA 189 (417)
T ss_pred cceehcccccccccCChhhhhHHHHHhc-ccc-ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667778889999999999999998 434 676665555555555555 37777776655554444443
No 208
>PRK11462 putative transporter; Provisional
Probab=93.99 E-value=0.56 Score=39.27 Aligned_cols=55 Identities=18% Similarity=0.048 Sum_probs=38.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 10 VGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
+...+......|-.++...+.+ +++|++.+++.....+ +|..+++.+...+...+
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~-iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT-AGGMLSTVLMMPLVNLI 173 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3344555556777788888888 6999999998888765 56566766655555444
No 209
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=93.92 E-value=0.0088 Score=51.71 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHhcchhHHH----HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 4 FLALFAVGELLVFATQGPVN----FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~----~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
++.++.++.+..+.+.+|.+ +-+=|-++++.-+.-+|+...+ ..+|+++|-+++|.....
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~-~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM-SILGPALGFLLGSFCLRI 203 (539)
T ss_dssp ------------SSS--------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH-hhccHHHHHHHHHHHHhc
Confidence 44556666666666666655 4566888999888899988876 478999888888876643
No 210
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.71 Score=38.77 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA 82 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~ 82 (132)
..+++-+-+|+ +-+..+|+|++... .|.++++.+.-.+..+.++||.++.+-....+++
T Consensus 120 LPslIK~~Fpk-~~~~mtglYs~sl~-~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA 178 (395)
T COG2807 120 LPSLIKRDFPK-RVGLMTGLYSTSLG-AGAALAAALAVPLAQHSGGWRGALGFWALLALLA 178 (395)
T ss_pred hhHHHHhhccc-chhhHHhHHHHHHH-HHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence 33555666664 58999999999986 5568888888888888755999998765444333
No 211
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=93.65 E-value=0.089 Score=39.88 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=39.6
Q ss_pred hcccchHHH----HHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc--cccccccccccccCCCCccccc
Q 032830 49 FGDVPSSPL----VGVLQDRVN--NWRETALILTAILFPAAAIWFIGIFLH-SVDK--FSEDNEDKVSRIERSKTTPLLE 119 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g--~~r~a~~~~~~~~iv~~~~~~~~~~~~-~~~~--~~~~~e~~~~~~~~~~~~~~~~ 119 (132)
+|+++|.++ .|++.|.+. .|..+|.+.=+...++++++.+..++. +++. .++..|..+.++-+|||+.++.
T Consensus 87 lGGAlGNliDRl~~G~VvDFi~~~~~p~iFNvADi~I~iGv~llll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
T PRK14778 87 LGGALGNLLDRIRFGYVLDFLNLTFLPTIFNLADVFIIVGGALMILGVFRGGDNESLESRKKRRGLETGSVFEGEDTVLD 166 (186)
T ss_pred HHHHHhhHHHHhhcCceEEEEEeccccceeEHHHHHHHHHHHHHHHHHHhcccccccccccccccccccceeccccceee
Confidence 344555543 566666544 133357776555556655555444433 2222 4466777777776677766554
No 212
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.43 E-value=0.52 Score=38.58 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+.+++..++.+++.+..+...++++.|+++ .++.|...|++++..+ +|..+++.+.|.+.+..|
T Consensus 316 ~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k-~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 316 WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK-IGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhH-HHHHHHHHHHHHHHHHhC
Confidence 355667777777778888888889999887 3456899999999986 688999999999988764
No 213
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.33 E-value=0.12 Score=44.41 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
.+|-.+.++.....+..|.+.+++..+..+.+++ |.+.+....+.
T Consensus 400 ~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~-~~~~f~~~~~~ 444 (495)
T KOG2533|consen 400 TKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG-WGAVFYMLVAA 444 (495)
T ss_pred HHhHHHHhhhhcchhHHHHhhhhhcccccCcchh-hhhHHHHHHHH
Confidence 3444555555555555555556666677777778 88888665433
No 214
>PRK10429 melibiose:sodium symporter; Provisional
Probab=93.17 E-value=0.73 Score=38.46 Aligned_cols=53 Identities=4% Similarity=-0.087 Sum_probs=34.1
Q ss_pred HHHHHHhcchhHHHHHhHhhc-CCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCV-KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~v-p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
+..++......|..++..++. ++++|....+......+ +|....+.+...+.+
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~-ig~~~~~~~~~~~~~ 168 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFAS-LAGFVTAGFTLPFVN 168 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344455566678888889988 48999999988555544 343444444444433
No 215
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.98 E-value=0.4 Score=40.10 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcC--CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVK--PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAI 78 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp--~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~ 78 (132)
..+++++..+..+.....+-++..+... |+.|+.-.+..... +.+|.+++..+.|.+.|..+ .+..|.+...+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~-~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~ 163 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGV-RSVGSLVGSLLSGPLLDSFG-PQGVFLISAAL 163 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCC-CeEEehHHHHH
Confidence 3445555666666666666666666653 33366766666665 45788999999999999988 88888776433
No 216
>PTZ00207 hypothetical protein; Provisional
Probab=92.85 E-value=0.24 Score=43.54 Aligned_cols=80 Identities=6% Similarity=-0.073 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhc-ccchHHHHHHHHHhhh----h--------HHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFG-DVPSSPLVGVLQDRVN----N--------WRETA 72 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG-~~~gP~i~G~l~D~~g----~--------~r~a~ 72 (132)
+..++.+++.+..++....++..++. ++-|.-.-+..+... +| .++.-.++|.+=|+-. + ++..|
T Consensus 457 ~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~p-igs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 457 LPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSV-LSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 34456666667777777788888888 777776665555432 33 2223445677777532 1 88888
Q ss_pred HHHHHHHHHHHHHHH
Q 032830 73 LILTAILFPAAAIWF 87 (132)
Q Consensus 73 ~~~~~~~iv~~~~~~ 87 (132)
.++..+++.+.++-.
T Consensus 535 ~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 535 AFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888777776665544
No 217
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.45 E-value=0.43 Score=40.40 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALILT 76 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~~~ 76 (132)
+.++..+.........+.++.|++.|+...++..+... +|...| .+.|+..++. + ||..+.+..
T Consensus 151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~-~~~~~~~~~~~~~-Wr~~~~~~~ 216 (513)
T KOG0254|consen 151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLG-YCINYGTSKVYAG-WRIPLGLAL 216 (513)
T ss_pred HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHH-HHHhhhhccCCcc-HHHHHHHHH
Confidence 33444444444555677789999999999999999886 786667 5556666543 6 997766653
No 218
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=91.85 E-value=1.6 Score=31.56 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHHHHHHHHHh--hhhHHHHHHHH
Q 032830 11 GELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR--VNNWRETALIL 75 (132)
Q Consensus 11 ~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~--~g~~r~a~~~~ 75 (132)
.++......+.....+.+..|+ +.|+...++.......+|...+|.+.+.+.+. .+ |++.+...
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLA 170 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence 3444445556677888899888 67888888887743456778898888888776 34 88855443
No 219
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=91.83 E-value=0.74 Score=39.53 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcC-------CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVK-------PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp-------~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+.++..++..+......+--++++.|.+. .+.-|...|++++..+ +|.+++-.+.|++.+..|
T Consensus 329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K-~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK-LGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 34444566677777777778888887765 3445688888888865 788999999999988764
No 220
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=91.74 E-value=0.44 Score=41.10 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHH
Q 032830 24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPL 57 (132)
Q Consensus 24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i 57 (132)
.-+.+..-+++|.+|.+..+... ++|.++||.+
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~-vlg~ilGp~~ 184 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGF-VLGIILGPTI 184 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHH-HHHHHHhHHH
Confidence 46667667788888888766632 3455555554
No 221
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=91.62 E-value=2 Score=35.22 Aligned_cols=41 Identities=15% Similarity=-0.145 Sum_probs=29.4
Q ss_pred CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 32 PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 32 ~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+..++++.+++++... .+..+++...|++.+. + -++.|...
T Consensus 342 ~~~~G~a~a~~~~~~~-~~~~~~~~~~g~~~~~-~-~~~~~~~~ 382 (413)
T PRK15403 342 NLPKGTVSASLNMVIL-MVMAVSVEIGRWLWFN-G-GRLPFHLL 382 (413)
T ss_pred CCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHc-C-CchHHHHH
Confidence 3458999999988864 4557789999998887 3 45555443
No 222
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=91.53 E-value=2.1 Score=36.73 Aligned_cols=55 Identities=7% Similarity=-0.074 Sum_probs=41.8
Q ss_pred HHHHHHHHhcchh-HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 8 FAVGELLVFATQG-PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 8 ~~l~~~~~~~~~~-~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
......++....+ .-++...|++..++-.+-.++..+..+ +|...||.+..++++
T Consensus 135 Yv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~gan-lg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 135 YVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGAN-VALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3334444444444 567888899999999999999999987 677889988888874
No 223
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=91.34 E-value=1.6 Score=34.46 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=23.9
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHH
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVG 59 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G 59 (132)
....+.+..| +.++++.++.+.....+|...|+++.+
T Consensus 308 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 308 AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556555 789999999877655555555665533
No 224
>PF12832 MFS_1_like: MFS_1 like family
Probab=90.66 E-value=3.1 Score=26.67 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 13 LLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 13 ~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
++...+..|-..+-.+. ...-+.-+|+...+..+.. .++|++.|+++|+++..+..+..
T Consensus 13 f~~~g~~~Pfl~~~~~~--~Gl~~~~iGil~~i~~~~~-~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQ--LGLSPSQIGILSAIRPLIR-FLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHhhhhHhhhh--cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCccHHHHHH
Confidence 33333444444444332 2333455555555544443 67899999999999855554443
No 225
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=90.58 E-value=2.4 Score=36.62 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcchhH-HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 032830 4 FLALFAVGELLVFATQGP-VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN 67 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~-~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~ 67 (132)
.++++++..+....+.+| .+-+..+.+|++.|+.|.++..+++. +...+-...+-.+.+.+|.
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w-~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW-LSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 344445555555555445 55788999999999999998888754 4444444555556666673
No 226
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.54 E-value=0.7 Score=36.39 Aligned_cols=41 Identities=7% Similarity=-0.079 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH 47 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ 47 (132)
+.++.+++.....++....+++.+|+++|++..|+++...+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34444566666778888999999999999999999887654
No 227
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=89.92 E-value=0.81 Score=36.02 Aligned_cols=42 Identities=10% Similarity=-0.019 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH 47 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ 47 (132)
.+..++++.......+.......+-+| ++||.++|+.-....
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~G 141 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFG 141 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHH
Confidence 333444444444444555555667787 579999998766543
No 228
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=89.76 E-value=2.5 Score=36.33 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
++...+...+-.....|-.++...+.+ +++|.+..+..+...+ +|..+...+.+.++..+
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~-~g~~l~~~~~~plv~~~ 176 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFAS-LGGLLVAVLFPPLVKLF 176 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 333444445555566777777777777 5999999998888765 56566655566666554
No 229
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=89.59 E-value=3.6 Score=34.78 Aligned_cols=63 Identities=14% Similarity=-0.062 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
+++-...++.++............+++..++++.|..+|.|..... .+-.+|-.+.|.+.|-.
T Consensus 302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA-~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQA-IARGLGTFLGGALRDLV 364 (403)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3556667777788788888888999999999999999999999864 67789999999999964
No 230
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=88.63 E-value=1.7 Score=37.17 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCC--CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKP--SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNN-WRETALILTAILF 80 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~--~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~-~r~a~~~~~~~~i 80 (132)
.++++++.|+.-+...+.=++++.+..|+ +..|.-+|+.++++ .++.++..+..|.+.+.+|+ -.+++.+.++..+
T Consensus 383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I-~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~ 461 (477)
T TIGR01301 383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAI-VIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAF 461 (477)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHH-HHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHH
Confidence 34455555555555556666788888885 44599999999987 57888888888886666652 5556666565555
Q ss_pred HHHHH
Q 032830 81 PAAAI 85 (132)
Q Consensus 81 v~~~~ 85 (132)
++++.
T Consensus 462 ~aa~~ 466 (477)
T TIGR01301 462 VSGLL 466 (477)
T ss_pred HHHHH
Confidence 55544
No 231
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=88.22 E-value=3 Score=32.59 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 38 SMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 38 a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
..++..... .++..++.++.|+++|++| -|..+..
T Consensus 38 ~~~~~~~~~-~~~~~~~~~~~g~l~dr~g-~r~~~~~ 72 (366)
T TIGR00886 38 QLGNLVAVP-VLAGAVLRIILGFLVDKFG-PRYTTTL 72 (366)
T ss_pred HhhHhhHHH-HHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence 344444333 4567889999999999998 5555544
No 232
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=88.04 E-value=1.2 Score=37.80 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=25.4
Q ss_pred cccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 032830 50 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI 85 (132)
Q Consensus 50 G~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~ 85 (132)
--.+||+++|.+.+..+ .+.+..+.....+++..+
T Consensus 161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHH
Confidence 34679999999999888 777776665555555443
No 233
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=87.13 E-value=7.1 Score=33.70 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=38.3
Q ss_pred HHHHHHHHhcchh-HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 8 FAVGELLVFATQG-PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 8 ~~l~~~~~~~~~~-~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
.+.+...+....+ --|...-++++.++-.+-.++..+..| +|.+.+..+.-++++
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~gan-igli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGAN-IGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3333433333333 246777788888999999999999887 566777777777777
No 234
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=86.61 E-value=0.39 Score=33.92 Aligned_cols=7 Identities=14% Similarity=0.155 Sum_probs=3.9
Q ss_pred HHHHHHH
Q 032830 69 RETALIL 75 (132)
Q Consensus 69 r~a~~~~ 75 (132)
||+++++
T Consensus 1 RW~l~~i 7 (130)
T PF12273_consen 1 RWVLFAI 7 (130)
T ss_pred CeeeHHH
Confidence 4666554
No 235
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=86.07 E-value=0.27 Score=30.47 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccccccc
Q 032830 68 WRETALILTAILFPAAAIWFIGIF-LHSVDKFSEDNE 103 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~-~~~~~~~~~~~e 103 (132)
||++.++.+++.++++.++.+... +...+.|+++.+
T Consensus 5 ~r~~~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~~Q~ 41 (58)
T PF15061_consen 5 WRYALFVGGFVGLIGAALYPIYFRPMMNPEEYKKEQK 41 (58)
T ss_pred ccchhhHHHHHHHHHHHHhhhhcccccChHHHHHHHH
Confidence 999999988888888888776543 334444544333
No 236
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=84.50 E-value=6.2 Score=33.37 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830 40 AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 40 gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~ 89 (132)
+....... +|...|.++.|.++|.+| -|..+.+..+..+++.++...+
T Consensus 92 s~~~s~~~-lga~~g~l~~g~l~d~~G-Rk~~l~~~~~~~~iG~ii~~~a 139 (513)
T KOG0254|consen 92 GLLTSILN-LGALVGSLLAGRLGDRIG-RKKTLLLAVVLFLIGAIIIALA 139 (513)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 45555443 667889999999999999 9999998887777776665543
No 237
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=83.91 E-value=0.83 Score=39.05 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLV 58 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~ 58 (132)
++++.+-+|..+.....+.-.-.++|...|+++.|..+-+.++ |.++.|.|.
T Consensus 439 vllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI-ggI~~p~iA 490 (528)
T KOG0253|consen 439 VLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI-GGIFSPVIA 490 (528)
T ss_pred HHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhh-hhhhhhHHH
Confidence 3444444555555555555566889999999999999998874 669999987
No 238
>PRK09848 glucuronide transporter; Provisional
Probab=83.89 E-value=11 Score=30.97 Aligned_cols=51 Identities=8% Similarity=-0.078 Sum_probs=28.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcCC-CCchHHHHHHHHHHH----hhcccchHHHHHH
Q 032830 10 VGELLVFATQGPVNFICLHCVKP-SIRPLSMAISTVSIH----IFGDVPSSPLVGV 60 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~----llG~~~gP~i~G~ 60 (132)
+.+.+.....+|.+++....+++ ++|....++.....+ .+|...+|.+.+.
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445556666665655554 678887766553322 2444556665543
No 239
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=82.92 E-value=2.2 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830 52 VPSSPLVGVLQDRVNN----WRETALILTAILFPAAAIWFIGIFLHSVD 96 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g~----~r~a~~~~~~~~iv~~~~~~~~~~~~~~~ 96 (132)
.+.++..|.+.|..|. .+|.....+...+...+.+++..+++|.+
T Consensus 195 ~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~ 243 (471)
T PF00939_consen 195 APNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPD 243 (471)
T ss_pred CchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777888765432 55555544433333333333333444433
No 240
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=82.48 E-value=18 Score=31.19 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=41.5
Q ss_pred HhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830 25 ICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 25 ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~ 89 (132)
.+.+.+| |++.+.-+|-+....++.-.... .+.+.+..++| |+.+..+++++.++.++.|+..
T Consensus 306 ~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~G-W~~~AlitPiv~lit~~~FF~~ 369 (491)
T PF03219_consen 306 QLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFG-WRTAALITPIVILITGLLFFGF 369 (491)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-HHHHHHHhHHHHHHHHHHHHHH
Confidence 4445556 45666666666665554332223 66788999999 9999999887777766655543
No 241
>PRK14794 lipoprotein signal peptidase; Provisional
Probab=82.09 E-value=1.9 Score=30.98 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~ 90 (132)
+.+....++..+ +|+++|.++ .|++.|.++ +|+| +|.+.=....++++++.+..
T Consensus 58 ~~~~~~i~l~lI----~gGaiGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iGv~lll~~~ 120 (136)
T PRK14794 58 RHKGEAIAYSLI----LGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSS 120 (136)
T ss_pred cchHHHHHHHHH----HHHHHHhHHHHHhcccCCceEEEeecCCCCceeeHHHHHHHHHHHHHHHHH
Confidence 334444554433 344555544 677777642 2444 66676555555554444433
No 242
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=81.81 E-value=3.7 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 032830 68 WRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNE 103 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e 103 (132)
+-|.-.+.+.++++.++.+.....+||-||.|+..+
T Consensus 38 ~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~p 73 (77)
T PF11118_consen 38 SLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQP 73 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhheeeccccccch
Confidence 445555566666666666666667887766666544
No 243
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=81.45 E-value=7.7 Score=33.17 Aligned_cols=53 Identities=13% Similarity=-0.029 Sum_probs=40.8
Q ss_pred HhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhH
Q 032830 15 VFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNW 68 (132)
Q Consensus 15 ~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~ 68 (132)
+....+...+.+...+.++++|.+.++...+.. +....+|.+.+.+.-.+.+|
T Consensus 344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~-l~~~~~~~~~~~i~~~t~~~ 396 (463)
T KOG2816|consen 344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEG-LSGVVSPALYGNIFALTLDD 396 (463)
T ss_pred hcchhHHHHhHHHhhcccccccchhhHHHHHHH-HhhhhhHHHHHHHHHHHHHh
Confidence 344445566788999999999999999998865 55688999998886655333
No 244
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=81.42 E-value=6.9 Score=32.86 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
.+++..++.++...+....+......+|...|.++.+......+ +|.+.+|.+.-....
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~-~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAAR-LGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 44555566666666777777788899999999999999999875 677888887755444
No 245
>PRK14772 lipoprotein signal peptidase; Provisional
Probab=80.59 E-value=2 Score=32.61 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCcc
Q 032830 59 GVLQDRVN--NWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTP 116 (132)
Q Consensus 59 G~l~D~~g--~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 116 (132)
|+++|.+. +| .+|.+.=+...++++++.+..++ . .+++.++...++|+||+
T Consensus 136 G~VvDFi~~~~~-pvFNvADi~I~iGvillli~~~~--~----~~~~~~~~~~~~~~~~~ 188 (190)
T PRK14772 136 GHVVDFIQLPNF-AIFNIADSAVVSGVVIICLLTLR--G----VSLDGTRHRGSKDGEDA 188 (190)
T ss_pred ceEEEeeecCCC-ceeeHHHHHHHHHHHHHHHHHHh--c----cCccccccccccCCCCC
Confidence 66666543 13 35666544444454443333221 1 11222444456666664
No 246
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=79.95 E-value=21 Score=30.74 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 032830 24 FICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF 87 (132)
Q Consensus 24 ~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~ 87 (132)
..+.+..| +++|+.-+|-+....+++- ..--++.+.+..++| |+.+..+++++.++.++.|+
T Consensus 289 ~~v~~~~p~~~~~~~f~g~~~~~~gi~t-l~~~l~~~~l~~~~G-w~~~a~i~Pii~lit~~~Ff 351 (472)
T TIGR00769 289 SKLKAQYPSPNEYSAFMGDFSTWTGVVS-VTMMLLSGNVIRKYG-WLTAALITPLVMLLTGVAFF 351 (472)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 34455555 4778888888888776554 344445589999999 99999998877766544444
No 247
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=79.84 E-value=7.1 Score=33.94 Aligned_cols=67 Identities=7% Similarity=0.079 Sum_probs=41.6
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV------LQDRVNNWRETALILTAILFPAAAIWFI 88 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~------l~D~~g~~r~a~~~~~~~~iv~~~~~~~ 88 (132)
+...+.+.+..|+...+.++|+|.+.. ..|..++-.+.+. ..+... -...|..++...++.+++++.
T Consensus 413 pvGLs~~t~laP~~~~s~~ma~wfLt~-a~~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 413 PVGLSMVTKLAPPALKSFIMAMWFLTV-AAGQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999998764 4555555444442 222223 445555555555554444443
No 248
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=79.57 E-value=9.7 Score=32.93 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=36.9
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 25 ICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 25 ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+-..+.+...-+...|...+.+- .++.+|.++.|.+.|++..++-...+.....++
T Consensus 289 l~~~l~~sgY~~~~aG~ig~l~i-v~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 289 LNLALCPSGYEGVFAGYIGALMI-VAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred hhhccccccCCccccchhHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 33356666555566666666653 455899999999999987677666655433333
No 249
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=79.20 E-value=4.7 Score=29.68 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHH
Q 032830 54 SSPLVGVLQDRVNN----------WRETALILTAILFPAAAI 85 (132)
Q Consensus 54 gP~i~G~l~D~~g~----------~r~a~~~~~~~~iv~~~~ 85 (132)
=.-|.+++++++|+ -.+.+|+.++++++.+.+
T Consensus 80 ~~qIid~mVaRYG~FVly~Pp~~~~T~lLW~~Pv~llllG~~ 121 (153)
T COG3088 80 DQQIIDYMVARYGEFVLYKPPLTGQTLLLWGLPVVLLLLGGV 121 (153)
T ss_pred HHHHHHHHHHhhcceeeecCCCchhHHHHHHhHHHHHHHHHH
Confidence 34567999999985 456667766655444333
No 250
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=79.16 E-value=7.3 Score=33.49 Aligned_cols=63 Identities=22% Similarity=0.126 Sum_probs=42.8
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
.+...++-....|...|..-+.+.... ..|.+....+.=.++..+| |||.++..++.+.+.+.
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~~~w--aig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMSFFW--AIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAAR 245 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHHHHH--HHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHHH
Confidence 455556777888988888777666443 3566666666655777789 99999987644443333
No 251
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=78.93 E-value=2.1 Score=32.62 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 032830 31 KPSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVNNWR--ETALILTAILFPAAAIWFIGIFLHS 94 (132)
Q Consensus 31 p~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g~~r--~a~~~~~~~~iv~~~~~~~~~~~~~ 94 (132)
+...+....++... +|+++|.++ .|+++|.++ ++ .+|.+.=....++++++.+..++.+
T Consensus 86 ~~~~~~~~~al~LI----lgGAlGNliDRl~~G~VvDFi~-~~~~pvFNvADi~I~iGvilLl~~~~~~~ 150 (191)
T PRK14789 86 PADSRWITVAVGMI----FGGGLSNLVDRIRQGYVVDFIQ-FGWWPVFNLADSAITIGVAALAFHIIFIG 150 (191)
T ss_pred cccchHHHHHHHHH----HHHHHhhHHHHHhcCceEEeEe-cCccceeeHHHHHHHHHHHHHHHHHHHhc
Confidence 44445444554333 344555544 577777654 32 3555654444555554444444443
No 252
>PRK03612 spermidine synthase; Provisional
Probab=78.26 E-value=22 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHH-HHhhhhHHHHHH
Q 032830 36 PLSMAISTVSIHIFGDVPSSPLVGVL-QDRVNNWRETAL 73 (132)
Q Consensus 36 ~~a~gi~~l~~~llG~~~gP~i~G~l-~D~~g~~r~a~~ 73 (132)
+...|-...+ +.+|.++|.+++|++ ...+| ...+.+
T Consensus 144 g~~~g~ly~~-ntlGa~~G~l~~~~vLlp~lG-~~~t~~ 180 (521)
T PRK03612 144 GHNVATVLAA-DYLGALVGGLAFPFLLLPRLG-LIRTAA 180 (521)
T ss_pred hhhhhhhHhH-HhHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 4445544444 568889999998884 45677 433333
No 253
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=77.66 E-value=6.5 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 032830 74 ILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRI 109 (132)
Q Consensus 74 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 109 (132)
..++.++++++...+..|-.|..-| +|.|....|+
T Consensus 7 LIpiSl~l~~~~l~~f~Wavk~GQf-DDle~~a~ri 41 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWSLKSGQY-DDLKGAAWRI 41 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC-CCCccHHHHH
Confidence 3444555555554444455566667 7777777774
No 254
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=77.57 E-value=2.7 Score=31.77 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=36.3
Q ss_pred hcccchHHH----HHHHHHhhh----hHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc-ccCCCCc
Q 032830 49 FGDVPSSPL----VGVLQDRVN----NWR--ETALILTAILFPAAAIWFIGIFLHSVDKFSEDN--EDKVSR-IERSKTT 115 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g----~~r--~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~--e~~~~~-~~~~~~~ 115 (132)
+|+++|.++ .|+++|.++ +++ ++|.+.=....++++++.+..+.. .++++ .++..+ ++|.+.|
T Consensus 99 lgGAlGNliDRi~~G~VvDFi~~~~~~~~~p~vFNvAD~~I~iGv~llii~~~~~----~~~~~~~~~~~~~~~~~~~~~ 174 (185)
T PRK14774 99 IGGALGNVVDRVLYGAVADFLNMSCCGIENPYAFNVADIAIFAGAFGLVLFTRET----KPEPEKPKGTPKRKPAERKAN 174 (185)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEeecCccCCCEEEHHHHHHHHHHHHHHHHHhcc----ccccccccCCCCCCcccccCC
Confidence 444555544 466666542 233 378877555555554443332211 11111 233333 3666667
Q ss_pred cccccccchh
Q 032830 116 PLLEDEKAET 125 (132)
Q Consensus 116 ~~~~~~~~~~ 125 (132)
+.-+|..|+|
T Consensus 175 ~~~~~~~~~~ 184 (185)
T PRK14774 175 GSGRPGGGKT 184 (185)
T ss_pred CCCCCCCCCC
Confidence 7777766654
No 255
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=77.22 E-value=25 Score=28.81 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=30.5
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
++....+.+- .+..+.-.|+...... ++..+++++.|.++|++|.-|..+.+
T Consensus 23 ~~l~~~l~~~--~g~s~~~iGl~~a~~~-~~~~i~~~~~g~l~dr~g~~r~~~~~ 74 (418)
T TIGR00889 23 VTLGSYMSKT--LHFSGAEIGWVYSSTG-IAAILMPILVGIIADKWLSAQKVYAV 74 (418)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4444444442 1334455665555543 45677888999999998544544443
No 256
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.25 E-value=14 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+.++.+.++-.. ..+++.++--..+||+.|++-
T Consensus 38 s~k~~~~a~kls-sefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 38 SIKGYAQAFKLS-SEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 456666664433 345554555555799999873
No 257
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.15 E-value=35 Score=29.39 Aligned_cols=44 Identities=9% Similarity=-0.124 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH 47 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ 47 (132)
+++++-++.++.=+...+..+.++.+.+ |++|..+-+++-+-..
T Consensus 355 ~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~ 398 (461)
T KOG3098|consen 355 LALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQS 398 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHH
Confidence 4555656666666667777888888888 6789988888877643
No 258
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=74.99 E-value=3.6 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032830 75 LTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 75 ~~~~~iv~~~~~~~~~~~~ 93 (132)
..+.++++.+++.+....|
T Consensus 12 liv~~iiaIvvW~iv~ieY 30 (81)
T PF00558_consen 12 LIVALIIAIVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433
No 259
>PRK01637 hypothetical protein; Reviewed
Probab=73.50 E-value=41 Score=26.55 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=23.9
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830 25 ICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 25 ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
.+-+..|+.+...-..+-......++.......+++-.++++++...+
T Consensus 189 ~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~~~y~~~Y 236 (286)
T PRK01637 189 LLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITTFPSYQLIY 236 (286)
T ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 445666754444333333333334455556666666666554444333
No 260
>PRK10263 DNA translocase FtsK; Provisional
Probab=73.23 E-value=70 Score=31.33 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=11.6
Q ss_pred cccchHHHHHHHHHhhh
Q 032830 50 GDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 50 G~~~gP~i~G~l~D~~g 66 (132)
|+++|-.+..++...+|
T Consensus 143 GGIIG~lLs~lL~~LfG 159 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLH 159 (1355)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 56667777666666666
No 261
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=72.48 E-value=54 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHH
Q 032830 36 PLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETAL 73 (132)
Q Consensus 36 ~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~ 73 (132)
+.-.|+...... +..+.+|++.|+++|+.++-+..+.
T Consensus 36 ~~qIG~l~a~~~-~~~i~~~~~~g~~aDr~~~~~~~l~ 72 (400)
T PF03825_consen 36 GTQIGILLAVGP-LARIVSPPFWGAIADRFGSAKRILA 72 (400)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhHHHHHH
Confidence 344444433332 3347789999999999865444433
No 262
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=71.88 E-value=41 Score=28.54 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=31.0
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh-hhHHHHHHHH
Q 032830 21 PVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-NNWRETALIL 75 (132)
Q Consensus 21 ~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-g~~r~a~~~~ 75 (132)
.-++-+-..+|+++=-++++....+. ++|-..|.+++=.+++.- .+++...++.
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~-l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAAT-LVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34466677888877778887666553 566555665544444421 1255444443
No 263
>COG2056 Predicted permease [General function prediction only]
Probab=71.66 E-value=11 Score=31.92 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccccccccc
Q 032830 54 SSPLVGVLQDRVN---------NWRETALILTAILFPAAAIWFIGIF-LHSVDKFSEDNEDK 105 (132)
Q Consensus 54 gP~i~G~l~D~~g---------~~r~a~~~~~~~~iv~~~~~~~~~~-~~~~~~~~~~~e~~ 105 (132)
|-+.-+.+.|..+ ....++++.+...+++.++ +.+ .|||+|.++++|.+
T Consensus 167 G~IF~~ii~~n~~~a~~~~~~~~V~~am~ip~lgMi~GLl~---ai~~~YrKpReY~~~~~~ 225 (444)
T COG2056 167 GLIFQSIILDNINAAGVSLSVNQVPKAMWIPGLGMIVGLLL---AIFVSYRKPREYQTNEIE 225 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHH---HHHHhhcCCccccccccc
Confidence 4444455556542 1455666665555555333 333 47777754544433
No 264
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=71.37 E-value=0.2 Score=40.82 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.+....+.+|.+.|++++++.....+ ++..++|.+...+.+..+
T Consensus 370 ~~~~~~ElfPt~~R~~~~~~~~~~~~-i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 370 PWIYTAELFPTKVRSTGIGLSYAVGR-IGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 34667899999999999999998866 566889988888888765
No 265
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=71.15 E-value=56 Score=27.02 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=9.4
Q ss_pred hcccchHHHHHHHHH
Q 032830 49 FGDVPSSPLVGVLQD 63 (132)
Q Consensus 49 lG~~~gP~i~G~l~D 63 (132)
.|...||++++.+..
T Consensus 285 ~gs~~G~i~Ga~ll~ 299 (364)
T TIGR03727 285 RESLLGAIVATVAIE 299 (364)
T ss_pred CCchHHHHHHHHHHH
Confidence 346677777766544
No 266
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=71.15 E-value=6.6 Score=33.56 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=40.3
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
+-.+..+...+-...++....|+++||.+.|+...+.. ++=++||.+.|.+...
T Consensus 361 l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~a-laRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 361 LKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGA-LARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHH-HHHHhhhhhhheeEEE
Confidence 33444444445566677888999999999999988864 6778999998877553
No 267
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=70.05 E-value=5.7 Score=25.39 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=19.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 032830 61 LQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSED 101 (132)
Q Consensus 61 l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 101 (132)
+.|.+..-.|........++++.+-++.-.||++++..|+.
T Consensus 24 lld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 24 LLDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 45655434555543333334454555555556544444443
No 268
>PRK14776 lipoprotein signal peptidase; Provisional
Probab=70.01 E-value=5.5 Score=29.61 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIG 89 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~ 89 (132)
+.+....++..+ +|+++|.++ -|++.|.++ +|+| +|.+.-....++++++.+.
T Consensus 92 ~~~~~~i~l~lI----lgGAlGNliDRl~~G~VvDFi~~~~~~~~~pvFNvAD~~I~iGv~ll~~~ 153 (170)
T PRK14776 92 RHKGEAIAYSLI----LGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSS 153 (170)
T ss_pred cchHHHHHHHHH----HHHHHHHHHHHHhcCccceEEEEeecCCCCceeeHHHHHHHHHHHHHHHH
Confidence 335555554433 344555543 577777542 2444 6667655555555544433
No 269
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=69.71 E-value=6.8 Score=27.91 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 032830 68 WRETALILTAIL 79 (132)
Q Consensus 68 ~r~a~~~~~~~~ 79 (132)
|.++++.+++++
T Consensus 35 WNysiL~Ls~vv 46 (125)
T PF15048_consen 35 WNYSILALSFVV 46 (125)
T ss_pred cchHHHHHHHHH
Confidence 999998875444
No 270
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=69.33 E-value=47 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCc
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIR 35 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R 35 (132)
+..++++++..+...+....++.+-++.+++.+
T Consensus 128 ~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~ 160 (477)
T PF11700_consen 128 LALVLFIIANVGYEASNVFYNAYLPDLARPEPR 160 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChh
Confidence 455666677777777777788899999999888
No 271
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.29 E-value=27 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHhhcccchHHHHHHHHHhh-------------h--hHHHHHHHHH
Q 032830 34 IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV-------------N--NWRETALILT 76 (132)
Q Consensus 34 ~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~-------------g--~~r~a~~~~~ 76 (132)
+-+..-++..+.+ ++|-++-|. ||=+|+. | +.||+|+...
T Consensus 112 ~cg~~q~~a~l~m-ilGc~lyP~--GW~s~~vr~~CG~~a~ky~lG~CsIgWaY~lAI 166 (207)
T KOG4026|consen 112 MCGWMQGIAGLCM-ILGCALYPD--GWDSPEVRRMCGAKAGKYYLGDCSIGWAYYLAI 166 (207)
T ss_pred hhHHHHHHHHHHH-HHHHHhcCC--ccCCHHHHHHhccccCCccCccccccHHHHHHH
Confidence 3444445444443 455555553 7777764 1 2778887653
No 272
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=68.68 E-value=1.6 Score=34.79 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=10.9
Q ss_pred HHHHHhhhhHH-HHHHHHHHHHHHH
Q 032830 59 GVLQDRVNNWR-ETALILTAILFPA 82 (132)
Q Consensus 59 G~l~D~~g~~r-~a~~~~~~~~iv~ 82 (132)
|.++|.++ |+ ..|.+.-+...++
T Consensus 187 g~VVDfi~-~~~~iFNlADi~I~~G 210 (263)
T PRK14780 187 NGVVDYWK-FVNSIINLFDVYIVVG 210 (263)
T ss_pred CceEEEEe-cCCceeEHHHHHHHHH
Confidence 56777665 43 3344443333333
No 273
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=68.05 E-value=11 Score=24.41 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=6.0
Q ss_pred hHHHHHHHHHhhh
Q 032830 54 SSPLVGVLQDRVN 66 (132)
Q Consensus 54 gP~i~G~l~D~~g 66 (132)
+.++.|++.|++|
T Consensus 14 ~~~~~g~~~d~~g 26 (141)
T TIGR00880 14 YSPLSGLLTDRFG 26 (141)
T ss_pred HHhhHHHHHhhcc
Confidence 3444444555444
No 274
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.00 E-value=20 Score=24.47 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 032830 56 PLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 98 (132)
Q Consensus 56 ~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~ 98 (132)
.+.|+....++ +++++.+..+.+.+++.+=.+-+|++++.
T Consensus 40 ~i~Gf~~Qqls---~tvy~vg~~~v~t~li~LPpwP~y~rn~L 79 (101)
T KOG4112|consen 40 FIYGFAQQQLS---VTVYIVGAGFVFTLLITLPPWPWYRRNPL 79 (101)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCchhhhcCcc
Confidence 45677777655 55665555555555554444446655654
No 275
>PRK14764 lipoprotein signal peptidase; Provisional
Probab=67.97 E-value=7.1 Score=30.16 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=15.3
Q ss_pred HHHHHhhhhH--HHHHHHHHHHHHHHHHHHHH
Q 032830 59 GVLQDRVNNW--RETALILTAILFPAAAIWFI 88 (132)
Q Consensus 59 G~l~D~~g~~--r~a~~~~~~~~iv~~~~~~~ 88 (132)
|+++|.++ + -.+|.+.=+...++.+++.+
T Consensus 150 G~VVDFi~-~~~~PvFNvADi~I~iGvillli 180 (209)
T PRK14764 150 GHVVDFLS-VGWWPVFNVADSAIVCGAILLVV 180 (209)
T ss_pred CEEEEeEe-cCCcceeeHHHHHHHHHHHHHHH
Confidence 66677654 3 23666665444555444443
No 276
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=67.83 E-value=20 Score=31.38 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=35.6
Q ss_pred hHHHHHhHhhcCCCC------chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSI------RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~------R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
+.+..++..++.... -+-..+..+.+. .+|.+.|.+.+|++.|++| =+..+....++++++.
T Consensus 61 ~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A-~vGti~GQl~FG~lgD~~G-RK~vYG~~liImIi~t 128 (538)
T KOG0252|consen 61 SLVTKILGYLYYHGDESGGHYPSGVLALVNAAA-LVGTIFGQLFFGWLGDKFG-RKKVYGKELIIMIICS 128 (538)
T ss_pred HHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHH
Confidence 444455555544332 223333344444 4788999999999999998 4444444333344443
No 277
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=66.95 E-value=12 Score=31.69 Aligned_cols=45 Identities=22% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSI 46 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~ 46 (132)
|+.+++++.-|..++..+......+.+-+|+++|-.++|.....-
T Consensus 336 ~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsd 380 (402)
T PF02487_consen 336 WIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSD 380 (402)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 444556666677777778888888888899999999999876653
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=66.40 E-value=35 Score=30.03 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
+..|.+.....+..+--.++..|..-|+-|-+.+.++|+ |+--...++=+++|.+
T Consensus 414 l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 414 LSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHHHhhhc
Confidence 444444445566667777999999999999999999985 5566666778899986
No 279
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=64.69 E-value=35 Score=29.58 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=39.2
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~ 89 (132)
++.+..+.+.+...+-+-..++ ..++-..+--+.+-|+.|.+| +|.+..+.++...+++.+=.++
T Consensus 65 a~i~n~~~~~Ygs~~~~~wlsm----Iym~v~vp~gf~~mw~ldk~G-LR~a~llgt~ln~iGa~Ir~is 129 (480)
T KOG2563|consen 65 APINNYVNSFYGSSSAADWLSM----IYMVVSVPFGFAAMWILDKFG-LRTALLLGTVLNGIGAWIRLIS 129 (480)
T ss_pred hhHHHHHHHHhcchHHHHHHHH----HHHHHHHHHhhHHHHhhcccc-hHHHHHHHHHHHHHHHHHhhhc
Confidence 5555555555553222222222 222223555566778999999 9999998877777776654433
No 280
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=63.59 E-value=8.7 Score=30.47 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhh
Q 032830 55 SPLVGVLQDRVN 66 (132)
Q Consensus 55 P~i~G~l~D~~g 66 (132)
..+.||.+.++|
T Consensus 92 n~l~Gw~~grfG 103 (254)
T PF07857_consen 92 NCLTGWASGRFG 103 (254)
T ss_pred HHHHHHHHhhce
Confidence 456788888775
No 281
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=62.65 E-value=1e+02 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=11.7
Q ss_pred CchHHHHHHHHHHHhhcccchHHHHHH
Q 032830 34 IRPLSMAISTVSIHIFGDVPSSPLVGV 60 (132)
Q Consensus 34 ~R~~a~gi~~l~~~llG~~~gP~i~G~ 60 (132)
+|..+...+.......+..+++...+.
T Consensus 128 srpLa~as~As~lGi~aSpin~~v~~l 154 (443)
T PRK12489 128 ERPMAAASVASQMGITASPVSAAVVSL 154 (443)
T ss_pred hhhHHHHHHHHHHHHHhcchhHHHHHH
Confidence 344444443333233444445554444
No 282
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=62.23 E-value=35 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
-..+...++.+..+..+|...|-.+..++..
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~ 60 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPP 60 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3455666666666666665555555555443
No 283
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=61.66 E-value=46 Score=28.15 Aligned_cols=65 Identities=12% Similarity=-0.052 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-hHHHHHHHHHH
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-NWRETALILTA 77 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-~~r~a~~~~~~ 77 (132)
+..+++.+.++.+-....++ ...+++ .+++-|....+ .++..|+...-.+.+ .| +.|.++.++.+
T Consensus 117 ~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssGTG-~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~ 182 (402)
T PF02487_consen 117 LGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSGTG-GAGLVGALYYLGLTT-LGLSPRTTLLIMLV 182 (402)
T ss_pred HHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCCcC-hhhHHHHHHHHHHHH-hCcCHHHHHHHHHH
Confidence 33444444444443333333 344443 23455555544 334667777666666 54 25666666543
No 284
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=60.63 E-value=27 Score=20.37 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 032830 74 ILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRI 109 (132)
Q Consensus 74 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 109 (132)
..++.++++++...+..|-.|..-| +|.|....|+
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~GQf-dD~e~~a~ri 40 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKSGQF-DDLEGPAHRI 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC-CCCcchHhhh
Confidence 3344445554444444454555556 6666665553
No 285
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=59.43 E-value=43 Score=27.24 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhccccc
Q 032830 84 AIWFIGIFLHSVDKFS 99 (132)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (132)
++..+-.|+||+|+.+
T Consensus 274 vliiLYiWlyrrRK~s 289 (295)
T TIGR01478 274 VLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHhhccc
Confidence 3334455777666643
No 286
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=58.61 E-value=20 Score=30.34 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcchhHHHHHhHhhcCC
Q 032830 6 ALFAVGELLVFATQGPVNFICLHCVKP 32 (132)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~ii~~~vp~ 32 (132)
++.++.++..+...+...++.. .+|+
T Consensus 111 ~~v~~~g~~~~~~q~s~~gla~-~fp~ 136 (437)
T TIGR00939 111 ASVVIINSGMALLQGSLFGLAG-VFPS 136 (437)
T ss_pred HHHHHHHhhhhhhcccchhhcc-cCCH
Confidence 3444445555555555555443 5554
No 287
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=58.16 E-value=43 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=11.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHH
Q 032830 68 WRETALI--LTAILFPAAAIWFIGIF 91 (132)
Q Consensus 68 ~r~a~~~--~~~~~iv~~~~~~~~~~ 91 (132)
..|.|++ ...++.++.++++++.+
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 33444555566555543
No 288
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=57.10 E-value=1.2e+02 Score=25.66 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=12.7
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGV 60 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~ 60 (132)
..++.+..+........+...+|.-.+.
T Consensus 127 ~~~~l~~~~~~a~iG~~aspin~~tv~i 154 (433)
T PRK09412 127 PSRPLSIAVVASQIAITASPISAAVVAM 154 (433)
T ss_pred CcchHHHHHHHHHHhcccCCccHHHHHH
Confidence 3345554444333333334456664443
No 289
>PRK14796 lipoprotein signal peptidase; Provisional
Probab=56.82 E-value=11 Score=27.59 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 34 IRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 34 ~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~~ 91 (132)
.+....++..+ +|+++|.++ .|++.|..+ +|+| +|.+.-....++++++.+..+
T Consensus 90 ~~~~~~~l~li----~gGalGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iGv~ll~~~~~ 152 (161)
T PRK14796 90 TRLAAIALGLI----IGGAIGNAIDRLAYGAVFDFVLLHAGTYSWYVFNLADAAIVAGVAGLLYDSL 152 (161)
T ss_pred cHHHHHHHHHH----HHHHHhhHHHHhhcCceEEEEEEccCCCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 34444554433 344555544 567777542 2343 666765555555555444433
No 290
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=55.51 E-value=30 Score=20.69 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=3.1
Q ss_pred hccccc
Q 032830 94 SVDKFS 99 (132)
Q Consensus 94 ~~~~~~ 99 (132)
|+..|+
T Consensus 25 K~ygYk 30 (50)
T PF12606_consen 25 KAYGYK 30 (50)
T ss_pred hccccc
Confidence 455565
No 291
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=55.16 E-value=53 Score=23.79 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=10.6
Q ss_pred hcccchHHHHHHHHHhhh
Q 032830 49 FGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 49 lG~~~gP~i~G~l~D~~g 66 (132)
++..+=|..+| ++++++
T Consensus 69 m~LfFVPagVG-im~~~~ 85 (141)
T PRK04125 69 IGFLFVPSGIS-VINSLG 85 (141)
T ss_pred HHHHHhhhHhH-HHHhHH
Confidence 56666777777 445544
No 292
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=54.96 E-value=47 Score=22.98 Aligned_cols=10 Identities=0% Similarity=0.059 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 032830 68 WRETALILTA 77 (132)
Q Consensus 68 ~r~a~~~~~~ 77 (132)
+.-++.+...
T Consensus 69 lpQalvLTaI 78 (114)
T PRK12660 69 LLQAIVLTAI 78 (114)
T ss_pred cchHHHHHHH
Confidence 5566665543
No 293
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=54.44 E-value=1.1e+02 Score=24.46 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=34.3
Q ss_pred HHHHHhHhhcCCC-CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHH
Q 032830 21 PVNFICLHCVKPS-IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT 76 (132)
Q Consensus 21 ~~~~ii~~~vp~~-~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~ 76 (132)
.....+-.+.|+. .+..-..+.......++..++..++|+-..++.++..++-..+
T Consensus 202 ~~f~~ly~~lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv~~~~~y~~~YGalg 258 (303)
T COG1295 202 LGFFLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLSNFANYSSTYGALG 258 (303)
T ss_pred HHHHHHHHHcCCccccchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3445566788876 5555423333333456778888888888887765555554443
No 294
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=54.16 E-value=29 Score=20.27 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=11.6
Q ss_pred cchHHHHHHHHHhhh
Q 032830 52 VPSSPLVGVLQDRVN 66 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g 66 (132)
..|..+.|++.+.++
T Consensus 5 iiGa~vGg~l~~~lg 19 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLG 19 (48)
T ss_pred hHHHHHHHHHHHHhc
Confidence 667888888887776
No 295
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=53.46 E-value=44 Score=21.48 Aligned_cols=43 Identities=14% Similarity=-0.012 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 032830 52 VPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK 97 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~ 97 (132)
++-..+.|++.+. ++..+++.++..+++.++..=.+.+|++++
T Consensus 21 ~iisfi~Gy~~q~---~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 21 AIISFIVGYITQS---FSYTFYIYGAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhheeCCcHhhcCCc
Confidence 4455667888775 556666654444444444433333554444
No 296
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=52.86 E-value=1.6e+02 Score=25.85 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=49.3
Q ss_pred HHhHhhcC-CCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 24 FICLHCVK-PSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 24 ~ii~~~vp-~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
+-+....| +++++.-+|-++...+++-....-.++|-++.+.| |-+.-.+.+++.++++++|+...++.
T Consensus 307 s~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~G-W~~~AlitPiv~litg~lFF~~~~f~ 376 (509)
T COG3202 307 SGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVG-WFTGALITPLVMLITGVLFFGFAFFN 376 (509)
T ss_pred HhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666 35577777777776665534556667788999999 99999998888888888777555444
No 297
>PRK13499 rhamnose-proton symporter; Provisional
Probab=52.63 E-value=42 Score=27.79 Aligned_cols=6 Identities=0% Similarity=0.025 Sum_probs=2.3
Q ss_pred cchHHH
Q 032830 52 VPSSPL 57 (132)
Q Consensus 52 ~~gP~i 57 (132)
..+|++
T Consensus 116 L~~~i~ 121 (345)
T PRK13499 116 LMPPII 121 (345)
T ss_pred HHHHHH
Confidence 334443
No 298
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=52.30 E-value=11 Score=33.23 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=35.4
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
.......-.-+-+|+++|+.+++++.+.+. +|..++..+...+....
T Consensus 475 ~~vg~lEFfY~qaP~sMkS~~~al~l~t~a-~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 475 TSVGGLEFFYSQAPESMKSVATALWLLTVA-VGNYLSSVLVSLVQFST 521 (571)
T ss_pred HhhhhHHHhHhhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 334445666788999999999999998864 78888888876554444
No 299
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=52.12 E-value=33 Score=24.37 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=6.7
Q ss_pred cchHHHHHH-HHH
Q 032830 52 VPSSPLVGV-LQD 63 (132)
Q Consensus 52 ~~gP~i~G~-l~D 63 (132)
.++-.++|| .++
T Consensus 89 v~~~~~~~~~~~~ 101 (142)
T PF11712_consen 89 VFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHH
Confidence 445566666 444
No 300
>PRK14775 lipoprotein signal peptidase; Provisional
Probab=51.64 E-value=21 Score=26.58 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=23.5
Q ss_pred hcccchHHH----HHHHHHhh----hhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRV----NNWRE-TALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~----g~~r~-a~~~~~~~~iv~~~~~~~~~~ 91 (132)
+|+++|.++ .|++.|.. ++|+| +|.+.=+...++.+++.+..+
T Consensus 97 ~gGAlGNliDRl~~G~VvDFi~~~~~~~~~pvFNvAD~~I~iGv~lll~~~~ 148 (170)
T PRK14775 97 IGGALGNLADRLRFGAVYDFISLHAGEFHWPAFNFADVCVTCGVICFLCLEV 148 (170)
T ss_pred HHHHHHHHHHHhhcccceeEEEEeecCCCCceEEHHHHHHHHHHHHHHHHHH
Confidence 455666654 57777764 22444 566765555555555444443
No 301
>PRK11469 hypothetical protein; Provisional
Probab=48.89 E-value=98 Score=23.20 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHH
Q 032830 36 PLSMAISTVSIHIFGDVPSSPLVGVL 61 (132)
Q Consensus 36 ~~a~gi~~l~~~llG~~~gP~i~G~l 61 (132)
+...|+++..+..+|...|-.+..++
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i 65 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFV 65 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566555555555555555553
No 302
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=48.41 E-value=1.7e+02 Score=25.74 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 35 RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 35 R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.+...+.+. .|-++.-+.+|+++|++| .|..+.+.
T Consensus 64 ~G~I~s~F~-----ysYal~qIp~GlLaDrlG-~K~vL~l~ 98 (511)
T TIGR00806 64 TNEIIPVLP-----YSHLAVLVPVFLLTDYLR-YKPVLVLQ 98 (511)
T ss_pred cchHHHHHH-----HHHHHHHHHHHHHHHHhC-chHHHHHH
Confidence 444444443 345667888999999998 66666543
No 303
>PRK14767 lipoprotein signal peptidase; Provisional
Probab=48.26 E-value=37 Score=25.25 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=22.4
Q ss_pred hcccchHHH----HHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVNNWR----ETALILTAILFPAAAIWFIGIFL 92 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g~~r----~a~~~~~~~~iv~~~~~~~~~~~ 92 (132)
+|+++|.++ .|++.|.++ ++ .+|.+.-....++.+++.+..++
T Consensus 105 lgGalGNliDRi~~G~VvDfi~-~~~~~~piFNvAD~~I~iGv~llli~~~~ 155 (174)
T PRK14767 105 VAGAAGNLIDRILNGYVVDFIY-FKLINFPIFNVADIYVTVSTFLFIILFLF 155 (174)
T ss_pred HHHHHhhHHHHHhcCCeeEEEE-ccccCCceeeHHHHHHHHHHHHHHHHHHH
Confidence 344555544 577777644 32 25666655555555544444443
No 304
>PTZ00370 STEVOR; Provisional
Probab=48.26 E-value=38 Score=27.55 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhccccccccccc
Q 032830 82 AAAIWFIGIFLHSVDKFSEDNEDK 105 (132)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~e~~ 105 (132)
+.++..+-.|+||+|+.+=-+|-+
T Consensus 268 ~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 268 AVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHH
Confidence 333334455777666654334433
No 305
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=47.82 E-value=86 Score=25.60 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=10.7
Q ss_pred HHHHhHhhcCCCCchH
Q 032830 22 VNFICLHCVKPSIRPL 37 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~ 37 (132)
....++|..||...+.
T Consensus 84 ~~~al~D~s~P~~~~~ 99 (299)
T PF05884_consen 84 IVNALQDTSPPEKLST 99 (299)
T ss_pred HHHHHHhcCCCcCCCc
Confidence 3457888887765554
No 306
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=47.80 E-value=85 Score=26.12 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 50 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 50 G~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
|-.++.+....+-. + +-+.+-..+.-.+.+.+++.+...++
T Consensus 161 GEPLSTIaVSKL~a--~-F~yL~~~lg~yIi~~vl~~gll~~~~ 201 (347)
T PF07854_consen 161 GEPLSTIAVSKLNA--D-FFYLFRLLGIYIIPGVLALGLLAAFF 201 (347)
T ss_pred CCCcHHHHHHHHcc--c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555522 2 44555444444445545554444444
No 307
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=47.53 E-value=51 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
+.-+.-+|+...+..+.. ....++.|.++|++|
T Consensus 39 GLs~~~iG~i~s~~~~~~-l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFA-LLAQPVYGFISDKLG 71 (412)
T ss_dssp ---HHHHHHHHHHHHHHH-HHTHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHhHHHhcchhh
Confidence 344445554444433333 344457799999998
No 308
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=47.48 E-value=54 Score=20.45 Aligned_cols=23 Identities=9% Similarity=-0.257 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032830 68 WRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
+..-++......+++.+++.++.
T Consensus 28 ~Pff~~w~~~wv~lts~~~~~~y 50 (66)
T PF11755_consen 28 MPFFYWWQLAWVVLTSVCMAIVY 50 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444434444444444433
No 309
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=46.79 E-value=35 Score=24.68 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=8.4
Q ss_pred CCCCccccccccch
Q 032830 111 RSKTTPLLEDEKAE 124 (132)
Q Consensus 111 ~~~~~~~~~~~~~~ 124 (132)
|++||.|.+|.+|+
T Consensus 67 ED~~daEI~dgAGe 80 (137)
T PF12270_consen 67 EDREDAEIADGAGE 80 (137)
T ss_pred ccccccccccCCCC
Confidence 44556666666665
No 310
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=46.76 E-value=47 Score=24.66 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 032830 68 WRETALILTAILFPA 82 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~ 82 (132)
...++++...+..+.
T Consensus 94 l~R~~~Vl~g~s~l~ 108 (163)
T PF06679_consen 94 LKRALYVLVGLSALA 108 (163)
T ss_pred hhhhHHHHHHHHHHH
Confidence 566666554333333
No 311
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=46.15 E-value=13 Score=27.09 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHH
Q 032830 55 SPLVGVLQDRVNN----------WRETALILTAILFPAAAI 85 (132)
Q Consensus 55 P~i~G~l~D~~g~----------~r~a~~~~~~~~iv~~~~ 85 (132)
--|.-++++++|+ ..|.+|+.++++++.+++
T Consensus 77 ~eI~~~~v~rYG~~Vl~~Pp~~~~~~~lW~~P~~~l~~g~~ 117 (148)
T PF03918_consen 77 EEIIDYFVERYGEFVLYEPPFKGFTWLLWLGPFLLLLLGGA 117 (148)
T ss_dssp HHHHHHHHHHHTTT-EES--S--------------------
T ss_pred HHHHHHHHHhcCcceeecCCCCccHHHHHHHHHHHHHHHHH
Confidence 3445667777753 778888877665554443
No 312
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=45.82 E-value=1.2e+02 Score=26.16 Aligned_cols=37 Identities=8% Similarity=0.278 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830 34 IRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 34 ~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
.-..-+.++.+..++++ ++|.++.|++.|++| ++-.+
T Consensus 285 ls~~~lll~g~~~~vvA-~lg~ii~g~Ld~rfg-~k~vl 321 (438)
T COG2270 285 LSSTELLLIGIALSVVA-ALGAIIAGFLDERFG-SKPVL 321 (438)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC-Cceee
Confidence 34466677777777766 899999999999998 66433
No 313
>KOG3058 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.59 E-value=77 Score=26.47 Aligned_cols=24 Identities=4% Similarity=-0.193 Sum_probs=14.3
Q ss_pred HHHHHHHhcchhHHHHHhHhhcCC
Q 032830 9 AVGELLVFATQGPVNFICLHCVKP 32 (132)
Q Consensus 9 ~l~~~~~~~~~~~~~~ii~~~vp~ 32 (132)
++..+..+...+.....+.+.+|+
T Consensus 72 fl~~~~~~~l~~v~l~~vHervP~ 95 (351)
T KOG3058|consen 72 FLYLFVAALLNSVTLVYVHERVPD 95 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 334444444555566777888885
No 314
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=45.38 E-value=52 Score=23.55 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 032830 78 ILFPAAAIWFIGIFLHSV 95 (132)
Q Consensus 78 ~~iv~~~~~~~~~~~~~~ 95 (132)
+++++.++|++...+.+.
T Consensus 76 FlIiA~vvF~ivk~~nk~ 93 (130)
T PRK13955 76 FLIIAASIFMFVKVFNKL 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666655555543
No 315
>PRK14795 lipoprotein signal peptidase; Provisional
Probab=45.25 E-value=31 Score=25.27 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 31 KPSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWR-ETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 31 p~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r-~a~~~~~~~~iv~~~~~~~~~ 90 (132)
+++.+-...++..+ +|+++|.++ .|++.|..+ +|+ .+|.+.-....++++++.+..
T Consensus 85 ~~~~~~~~~~l~lI----lgGaiGNliDRl~~G~VvDFi~~~~~~~~~pvFNvAD~~I~iG~~lli~~~ 149 (158)
T PRK14795 85 APDRVFARLGFALI----IGGAIGNLIDRFMYGYVIDYILFHTPTWSFAVFNLADSFITIGAGLIILEE 149 (158)
T ss_pred ccccHHHHHHHHHH----HHHHHHhHHHHHhcCceeEEEEEccCCCCCceeeHHHHHHHHHHHHHHHHH
Confidence 33444444554433 344555544 577777643 122 256666555555555444433
No 316
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=44.00 E-value=1.5e+02 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=8.2
Q ss_pred cccchHHHHHHHHHh
Q 032830 50 GDVPSSPLVGVLQDR 64 (132)
Q Consensus 50 G~~~gP~i~G~l~D~ 64 (132)
|....+++.|.+.+.
T Consensus 173 g~~~n~i~~~~~~~~ 187 (444)
T TIGR00785 173 GSAPNALAAGILSKI 187 (444)
T ss_pred cCChHHHHHHHHHHh
Confidence 444445666766544
No 317
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=43.98 E-value=85 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 032830 78 ILFPAAAIWFIGIFLHSV 95 (132)
Q Consensus 78 ~~iv~~~~~~~~~~~~~~ 95 (132)
+++++.++|++...+.+.
T Consensus 83 FlIia~vvF~ivk~~n~~ 100 (134)
T PRK00567 83 FLIIAFAIFLLVKLINKL 100 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666555545543
No 318
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=43.64 E-value=37 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=16.9
Q ss_pred cccccccccccccCCCCccccccc
Q 032830 98 FSEDNEDKVSRIERSKTTPLLEDE 121 (132)
Q Consensus 98 ~~~~~e~~~~~~~~~~~~~~~~~~ 121 (132)
.|...|+|.+..++-+...+.+|-
T Consensus 169 LNnrlE~eV~~i~~~~~~~l~rHy 192 (237)
T PF13748_consen 169 LNNRLEKEVDIIERRKPASLRRHY 192 (237)
T ss_pred HhHHHHHHccHhhcCChHHHHHHH
Confidence 556677777777777777766663
No 319
>COG1971 Predicted membrane protein [Function unknown]
Probab=43.55 E-value=82 Score=24.02 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.7
Q ss_pred CchHHHHHH
Q 032830 34 IRPLSMAIS 42 (132)
Q Consensus 34 ~R~~a~gi~ 42 (132)
+....+++.
T Consensus 34 ~~~L~ia~~ 42 (190)
T COG1971 34 KEALVIALI 42 (190)
T ss_pred HHHHHHHHH
Confidence 334444443
No 320
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=43.51 E-value=78 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=24.6
Q ss_pred chhHHHHHhHhhcCCCCchHHHHHHHHHHHhhc-ccchHHHHHHHHHhhh
Q 032830 18 TQGPVNFICLHCVKPSIRPLSMAISTVSIHIFG-DVPSSPLVGVLQDRVN 66 (132)
Q Consensus 18 ~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG-~~~gP~i~G~l~D~~g 66 (132)
...|.++++.-.+|.+++- ..+--++.. +| ++.--++.|++.+.+.
T Consensus 35 lf~PGy~l~~~lfp~~~~l--~~~er~~ls-~glSi~~~~~~g~~l~~~~ 81 (287)
T PF07760_consen 35 LFLPGYALVAALFPRKHDL--DGIERLALS-VGLSIAIVPLIGLLLNYTP 81 (287)
T ss_pred HHhccHHHHHHHccCcCCC--cHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 3478888888888853222 111222222 22 2333445688888765
No 321
>PRK03427 cell division protein ZipA; Provisional
Probab=43.09 E-value=45 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 032830 68 WRETALILTAILFPAAAIWFIGIFLHSVDK 97 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~ 97 (132)
+|.++.+.+.+.|++. ++-+.|..||+|
T Consensus 5 LrLiLivvGAIAIiAl--L~HGlWtsRKer 32 (333)
T PRK03427 5 LRLILIIVGAIAIIAL--LVHGFWTSRKER 32 (333)
T ss_pred hhhHHHHHHHHHHHHH--HHHhhhhccccc
Confidence 8888888776666654 334557666655
No 322
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.26 E-value=56 Score=26.33 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=3.0
Q ss_pred CCCCchH
Q 032830 31 KPSIRPL 37 (132)
Q Consensus 31 p~~~R~~ 37 (132)
|+++|+.
T Consensus 90 ~~~~~~~ 96 (385)
T PF03547_consen 90 PKEWRGV 96 (385)
T ss_pred CcccceE
Confidence 3444443
No 323
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=41.77 E-value=63 Score=27.36 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 59 GVLQDRVN-----NWRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 59 G~l~D~~g-----~~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
-++.|-+. .|||.+.+-....+++-++|.+.+|..
T Consensus 48 rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlI 87 (400)
T KOG3827|consen 48 RYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLI 87 (400)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556542 299999887777777766666666544
No 324
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=41.60 E-value=1.2e+02 Score=20.98 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=20.4
Q ss_pred CCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 31 KPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 31 p~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
.+|+.++...+..+.+. .++|+..|.++..
T Consensus 35 Rkhk~~~f~pi~~l~mg----~l~p~~~G~itSa 64 (105)
T PF10190_consen 35 RKHKFGRFIPIVILLMG----VLGPLTGGSITSA 64 (105)
T ss_pred hhccchhhhHHHHHHHH----HHHHHHHhHHHHH
Confidence 57788888888877654 4456666665553
No 325
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=41.02 E-value=66 Score=27.87 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=40.2
Q ss_pred HHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 10 VGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 10 l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
+..++........++-..++.+|..-|+-+.+.+...|+.| -.-..+.++++|.+
T Consensus 378 ~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg-~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 378 FHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGG-NWPGTVALWLADGL 432 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcC-CcHHHHHHHhcccC
Confidence 34444444445566677799999999999999999988555 44455678899976
No 326
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=40.81 E-value=55 Score=22.80 Aligned_cols=23 Identities=4% Similarity=0.263 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 032830 66 NNWRETALILTAILFPAAAIWFI 88 (132)
Q Consensus 66 g~~r~a~~~~~~~~iv~~~~~~~ 88 (132)
+-+.-++...+.+.-++...+.+
T Consensus 66 DPlPQALvLTaIVIg~a~tAl~L 88 (113)
T PRK08600 66 DPLPQALILTAIVISFGVTAFFL 88 (113)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 34777777765544444444433
No 327
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=40.44 E-value=49 Score=28.13 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhc
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFG 50 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG 50 (132)
++..++++=++.-...-...-++|+.+|+++|+...|+.....+++-
T Consensus 359 l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ 405 (432)
T PF06963_consen 359 LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFE 405 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444455566788999999999999999998887654
No 328
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=40.18 E-value=2.4e+02 Score=24.16 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=23.4
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHH---HHhhcccchHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVS---IHIFGDVPSSPLVGVL 61 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~---~~llG~~~gP~i~G~l 61 (132)
.|..-.+.+-...+....+..+..-. ..++-|-|||+...-.
T Consensus 122 ~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPPtPgpla~a~~ 166 (441)
T PF02447_consen 122 APLAFSLARKTGKSLLYLALPLAAGLSVTHALVPPTPGPLAAAGA 166 (441)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCcHHHHHHH
Confidence 44444555555555555544443322 3456688999875433
No 329
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=40.07 E-value=1.7e+02 Score=26.25 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=20.9
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSI 46 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~ 46 (132)
.......-+-.|+++|+...+++.+..
T Consensus 584 ~~~~e~~~~~~p~~mks~~~a~~~~~~ 610 (654)
T TIGR00926 584 VTGLEFSYSQAPPNMKSVLQALWLLTV 610 (654)
T ss_pred HHHHHhhHHhCcHHHHHHHHHHHHHHH
Confidence 334456668899999999999988764
No 330
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=39.99 E-value=2.3e+02 Score=24.01 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=12.3
Q ss_pred CCchHHHHHHHHHHHhhcccchHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPLVGVLQ 62 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i~G~l~ 62 (132)
..++.+......-....+...+|. .+.++
T Consensus 123 ~i~~~ai~~~aa~iG~~as~in~~-~~~~i 151 (430)
T TIGR00770 123 PERPLSLAVVSSQIAITASPVSAA-VVFMS 151 (430)
T ss_pred ChhHHHHHHHHHHHHHHhhcccHH-HHHHH
Confidence 345555444333332233444554 33343
No 331
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.94 E-value=1.1e+02 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=6.4
Q ss_pred ccchHHHHHHHHHh
Q 032830 51 DVPSSPLVGVLQDR 64 (132)
Q Consensus 51 ~~~gP~i~G~l~D~ 64 (132)
+++.-...|.-.|.
T Consensus 55 pil~G~~lG~WLD~ 68 (100)
T TIGR02230 55 PTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333444555554
No 332
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=39.77 E-value=1.6e+02 Score=26.51 Aligned_cols=96 Identities=17% Similarity=0.046 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHh-cchhHHHHHhHhhcC--CCCchHHHHHHHHHHHhhcc---cchHHHHHHHHHhhhhHHHHHHHHHH
Q 032830 4 FLALFAVGELLVF-ATQGPVNFICLHCVK--PSIRPLSMAISTVSIHIFGD---VPSSPLVGVLQDRVNNWRETALILTA 77 (132)
Q Consensus 4 ~~~~~~l~~~~~~-~~~~~~~~ii~~~vp--~~~R~~a~gi~~l~~~llG~---~~gP~i~G~l~D~~g~~r~a~~~~~~ 77 (132)
|+.++.+.+.-+. .........+.|-+| ..+|-....+.-+..-++|. ..|++..=-+.|.++ =.|..+
T Consensus 388 fF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~-a~~~~~---- 462 (629)
T KOG3660|consen 388 FFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYA-ASWSLL---- 462 (629)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHh-chHHHH----
Confidence 3344433333333 333445568889999 55555555555444445552 224444444777665 112222
Q ss_pred HHHHHHHHHHHHHHHhhccccccc-ccccc
Q 032830 78 ILFPAAAIWFIGIFLHSVDKFSED-NEDKV 106 (132)
Q Consensus 78 ~~iv~~~~~~~~~~~~~~~~~~~~-~e~~~ 106 (132)
+++..-++...|.|..+++++| +++.+
T Consensus 463 --~~~~~e~~~i~wiYG~~~~~~di~~M~g 490 (629)
T KOG3660|consen 463 --FIAIFECFAIAWVYGADRFRDDIHEMIG 490 (629)
T ss_pred --HHHHHHHHHHhheecccchHhhHHHHhC
Confidence 2233334456688888888777 55544
No 333
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=39.56 E-value=90 Score=19.12 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 60 VLQDRVNN----WRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 60 ~l~D~~g~----~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
-++|++|- +|..|.+..++...+.+++++++.+.
T Consensus 19 GlA~~~gid~~~vRl~~v~l~~~~~~~~l~Y~~~w~~l 56 (61)
T PF04024_consen 19 GLAEYFGIDPTLVRLIFVVLTFFTGGGILLYLILWLLL 56 (61)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 37777761 56666655543333555666655544
No 334
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=39.12 E-value=91 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHH
Q 032830 54 SSPLVGVLQDRVNN----------WRETALILTAILFPAA 83 (132)
Q Consensus 54 gP~i~G~l~D~~g~----------~r~a~~~~~~~~iv~~ 83 (132)
=--|..++.+++|+ -.|.+|+.++++++.+
T Consensus 76 d~eI~~~~v~RYG~~Vl~~Pp~~~~t~~LW~~P~~lll~g 115 (126)
T PRK10144 76 EVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLM 115 (126)
T ss_pred HHHHHHHHHHhcCCeEEecCCCCcchHHHHHHHHHHHHHH
Confidence 34456778888764 6788888776655444
No 335
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=39.10 E-value=86 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhh----------HHHHHHHHHHHHHHHH
Q 032830 55 SPLVGVLQDRVNN----------WRETALILTAILFPAA 83 (132)
Q Consensus 55 P~i~G~l~D~~g~----------~r~a~~~~~~~~iv~~ 83 (132)
--|..++.|++|+ ..|.+|+.++++++.+
T Consensus 77 ~eI~~~~v~RYG~~Vly~Pp~~~~t~~LW~~P~lll~~G 115 (126)
T TIGR03147 77 QQIIDFMTARFGDFVLYNPPFKWQTLLLWLLPVLLLLLA 115 (126)
T ss_pred HHHHHHHHHhcCCeEEecCCCCcchHHHHHHHHHHHHHH
Confidence 3456777777764 6788888776554443
No 336
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=38.34 E-value=1.9e+02 Score=24.38 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHhhcccchH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 032830 35 RPLSMAISTVSIHIFGDVPSS----PLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 98 (132)
Q Consensus 35 R~~a~gi~~l~~~llG~~~gP----~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~~ 98 (132)
+..+.++.... ..+|+.+-| ++.|..++ .+ -.-.|....+-+++.++.+.+..|++.+|+.
T Consensus 87 ~~~aa~l~a~s-~~ig~lIPPSi~~IIyg~~a~-~S-I~~LF~aGi~PGlLl~~~lm~~~~~~a~~~~ 151 (379)
T COG1593 87 AAFAAALTAAS-GIIGPLIPPSIPFIIYGVAAG-VS-IGKLFVAGIVPGLLLTLALMVVAYIVARKRG 151 (379)
T ss_pred HHHHHHHHHhh-ccccccCCCCchHHHHHHhcc-Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44666665554 467766666 44566655 22 4444443222234444445555555544443
No 337
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=37.25 E-value=34 Score=16.87 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHhhh
Q 032830 52 VPSSPLVGVLQDRVN 66 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g 66 (132)
+++|+++|.+..-++
T Consensus 4 iIaPi~VGvvl~l~~ 18 (21)
T PF13955_consen 4 IIAPIVVGVVLTLFD 18 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHH
Confidence 457888887655443
No 338
>PHA02706 hypothetical protein; Provisional
Probab=36.32 E-value=14 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.9
Q ss_pred HHHHHHhhccc-cccccccccccc
Q 032830 87 FIGIFLHSVDK-FSEDNEDKVSRI 109 (132)
Q Consensus 87 ~~~~~~~~~~~-~~~~~e~~~~~~ 109 (132)
++-.||.++|+ .++.+|.+-.++
T Consensus 29 finayfvkkr~~~~k~~e~~pll~ 52 (58)
T PHA02706 29 FINAYFVKKRKCINKKDEIEPLLD 52 (58)
T ss_pred eeehhhhhhhhhcccccccchhhh
Confidence 44556666666 456677665554
No 339
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=36.23 E-value=47 Score=28.51 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcch-hHHHHHhHhhcCCCCchHHH
Q 032830 4 FLALFAVGELLVFATQ-GPVNFICLHCVKPSIRPLSM 39 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~-~~~~~ii~~~vp~~~R~~a~ 39 (132)
|+.++++.+.-+.... -+....+.|..|..+|.+..
T Consensus 351 FFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~~r~~ 387 (523)
T PF00209_consen 351 FFLMLFLAGLTSQISMLEVIVSALMDEFPISRKKRKK 387 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTST----HHHH
T ss_pred HHHHHHHHHhhhcCCceeceeEeeeecCccchhhccc
Confidence 3333334443333332 23445677888874444333
No 340
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=35.71 E-value=1.1e+02 Score=19.07 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 032830 68 WRETALILTA 77 (132)
Q Consensus 68 ~r~a~~~~~~ 77 (132)
|...+..+++
T Consensus 5 l~i~i~Gm~i 14 (79)
T PF04277_consen 5 LQIMIIGMGI 14 (79)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 341
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=35.51 E-value=1e+02 Score=21.52 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 67 NWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 67 ~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
-+.-++...+.+.-++...+.++.
T Consensus 71 PLPQALvLTaIVIg~a~tA~~Lal 94 (114)
T PRK09094 71 PLPQALVLTAIVIGFAMTALFLVV 94 (114)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 377777776655444444444333
No 342
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=34.99 E-value=75 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHH
Q 032830 52 VPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.++..++|.++-..++|++...+.
T Consensus 23 a~aa~~vG~~~~~~~g~~~~~~L~ 46 (226)
T PF01940_consen 23 ALAAFLVGTLIYGFGGWPWFLLLL 46 (226)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445556666555444476666554
No 343
>PRK14770 lipoprotein signal peptidase; Provisional
Probab=34.76 E-value=32 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=21.4
Q ss_pred hcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~ 90 (132)
+|+++|.++ .|++.|..+ +|+| +|.+.-....++++++.+..
T Consensus 106 lgGAlGNliDR~~~G~VvDFi~~~~~~~~~pvFNvAD~~I~iGv~ll~~~~ 156 (167)
T PRK14770 106 MGGAIGNVIDRMRYGAVVDFLHAHAFGWSWYVFNLADAAIDCGVAVLLIDS 156 (167)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEEccCCCCCCeeeHHHHHHHHHHHHHHHHH
Confidence 444555544 466777542 2333 56666544455554444433
No 344
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=34.67 E-value=67 Score=19.85 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q 032830 75 LTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSR 108 (132)
Q Consensus 75 ~~~~~iv~~~~~~~~~~~~~~~~~~~~~e~~~~~ 108 (132)
+++.++++++...+..|-.+..-| +|.+....+
T Consensus 8 ipvsi~l~~v~l~~flWavksgQy-DDl~g~ae~ 40 (58)
T COG3197 8 IPVSILLGAVGLGAFLWAVKSGQY-DDLDGPAER 40 (58)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCc-ccccccHHH
Confidence 344444444444433344444446 444433333
No 345
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=34.51 E-value=93 Score=26.91 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhh
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIF 49 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ll 49 (132)
++++..+.+=+..-.....+.-++|+.+|.++|..+-|+.+.....+
T Consensus 388 ll~agVaaaR~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~l 434 (503)
T KOG2601|consen 388 LLFAGVAAARLGLWMFDLAVTQIMQETVPESERCVVFGVQNSLNSAL 434 (503)
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHhcchhhhhhhHhHHHHHHHHH
Confidence 44444444444444455666778899999999999999998776543
No 346
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=34.45 E-value=13 Score=29.49 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCC
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPS 33 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~ 33 (132)
+++.+++.+..++..+++.. .+|++
T Consensus 4 v~~~~~~~~~~q~s~~glas-~~p~~ 28 (309)
T PF01733_consen 4 VALIGFANAVLQSSLFGLAS-LFPPK 28 (309)
T ss_dssp --------------------------
T ss_pred EEEEHhhhHHHhccHHHHHh-cCCHH
Confidence 34455566666666666655 45654
No 347
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=34.22 E-value=1.7e+02 Score=24.71 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 35 RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 35 R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
|-...+.....+.-.|++.||++. -.+| |--++....+..+..+.+-....
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~a----a~~G-wlPa~lWI~~G~if~GaVHD~~s 104 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILA----AQFG-WLPALLWIVFGCIFAGAVHDYGS 104 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHH----HHhc-chHHHHHHHHccHHHHHHHHHHH
Confidence 556777666655555566677654 4578 76555544444444444443333
No 348
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=34.12 E-value=1.1e+02 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032830 78 ILFPAAAIWFIGIFLHS 94 (132)
Q Consensus 78 ~~iv~~~~~~~~~~~~~ 94 (132)
+++++.++|++...+.|
T Consensus 78 FlIiA~vvf~~vk~~~k 94 (127)
T TIGR00220 78 FLIIAFAIFMIIKAINK 94 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666655444444
No 349
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=33.86 E-value=1.1e+02 Score=23.73 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=3.4
Q ss_pred cccchHHH
Q 032830 50 GDVPSSPL 57 (132)
Q Consensus 50 G~~~gP~i 57 (132)
|..+|-++
T Consensus 18 g~~iGg~~ 25 (248)
T PF11368_consen 18 GGLIGGFI 25 (248)
T ss_pred HHHHHHHH
Confidence 33444443
No 350
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=33.84 E-value=54 Score=27.53 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=30.6
Q ss_pred hhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 032830 28 HCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 28 ~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g 66 (132)
.++..++-..+.|++..+.+ +|...--.+.+++-|..+
T Consensus 163 ~wFKGKELn~vfGlqlSvAR-~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 163 YWFKGKELNFVFGLQLSVAR-LGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred EEecCccccchhhHHHHHHH-hhceeeeeecHHHHHHHH
Confidence 46777899999999999887 787777777788888764
No 351
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=33.50 E-value=3e+02 Score=23.41 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 37 LSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 37 ~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
.+..+........|+..+|.-.|.-.+
T Consensus 161 ~a~v~~~~~~g~~~~~~npf~~~iAq~ 187 (465)
T PF03606_consen 161 AAAVILGAGAGFAGPPSNPFTVGIAQK 187 (465)
T ss_pred HHHHHHHHHHhhcCCccChHHHHHHHH
Confidence 333333333334456667665665444
No 352
>PF15471 TMEM171: Transmembrane protein family 171
Probab=33.09 E-value=35 Score=27.67 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830 72 ALILTAILFPAAAIWFIGIFLHSVD 96 (132)
Q Consensus 72 ~~~~~~~~iv~~~~~~~~~~~~~~~ 96 (132)
+.+++.+.++.+++|++.+-.+|++
T Consensus 162 lQImGPlIVl~GLCFFVVAHvKKr~ 186 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVAHVKKRN 186 (319)
T ss_pred hhhhhhHHHHHhhhhhheeeeeecc
Confidence 4455555555556666554344333
No 353
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=32.76 E-value=72 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=11.2
Q ss_pred HhhcccchHHHHHHHHHh
Q 032830 47 HIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 47 ~llG~~~gP~i~G~l~D~ 64 (132)
|.+|.+.|.+..|...+.
T Consensus 317 HGvgGi~G~i~~GiFa~~ 334 (409)
T COG0004 317 HGVGGIVGAILTGIFAAP 334 (409)
T ss_pred cchhhHHHHHHHHHhcCc
Confidence 345556677777766664
No 354
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=32.47 E-value=19 Score=27.56 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=5.0
Q ss_pred HHHHHHhh
Q 032830 58 VGVLQDRV 65 (132)
Q Consensus 58 ~G~l~D~~ 65 (132)
.|.+.|.+
T Consensus 136 ~G~VVDFi 143 (201)
T PRK14766 136 YGGVVDFL 143 (201)
T ss_pred CceEEEeE
Confidence 46677764
No 355
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=32.36 E-value=2.8e+02 Score=23.30 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGV 60 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~ 60 (132)
-++++.++.-+.+.-.+...-+++|+..+ -.++.-+. |-++..+.+.++|.
T Consensus 243 TllLI~lSY~fhftr~GlAI~itmDvSD~-----~Ls~sK~l-nYl~~~l~~~iF~i 293 (395)
T COG5058 243 TLLLIWLSYVFHFTRMGLAIYITMDVSDF-----FLSLSKTL-NYLNSVLATFIFGI 293 (395)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEeccHH-----HHHHHHHH-HHhhchhHHHHHHH
Confidence 34556666666666666655566666443 33333333 23555666666554
No 356
>PRK00376 lspA lipoprotein signal peptidase; Reviewed
Probab=32.31 E-value=27 Score=25.53 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 32 PSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 32 ~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~~ 91 (132)
+..+-...++... +|+++|..+ .|++.|..+ +++| +|.+.-....++.+++.+..+
T Consensus 91 ~~~~~~~~~l~li----~gGaiGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~~G~~lll~~~~ 155 (160)
T PRK00376 91 ALQKLNNIAYALI----LGGALGNLIDRLVHGFVVDFIDFYWGNWHFPAFNLADSAICIGAVLLILDSF 155 (160)
T ss_pred ccchHHHHHHHHH----HHHHHHhHHHHhhcCCeeEEEEecccCCCCceEEHHHHHHHHHHHHHHHHHH
Confidence 3334444555433 344555543 566777543 2332 566665555555555444433
No 357
>PRK09921 permease DsdX; Provisional
Probab=32.26 E-value=3.2e+02 Score=23.32 Aligned_cols=30 Identities=7% Similarity=0.278 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHH-HhhcccchHHHHHHHHHhhh
Q 032830 34 IRPLSMAISTVSI-HIFGDVPSSPLVGVLQDRVN 66 (132)
Q Consensus 34 ~R~~a~gi~~l~~-~llG~~~gP~i~G~l~D~~g 66 (132)
+++.+.++..... ..+.+.|||+.. ++.+|
T Consensus 142 ~~~~~~~~~~~~~h~~vPp~Pg~~~~---a~~lg 172 (445)
T PRK09921 142 KLAIPLCTALMAVHCVVPPHPAALFV---ANKLG 172 (445)
T ss_pred HHHHHHHHHHHHhHhcCCCCcHHHHH---HHHhC
Confidence 5555544433332 345678888876 55544
No 358
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=31.98 E-value=3.3e+02 Score=23.45 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=19.6
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHH-HHHHhhh
Q 032830 25 ICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVG-VLQDRVN 66 (132)
Q Consensus 25 ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G-~l~D~~g 66 (132)
.++|-..-+ |..++-+.....-++| .+...-.| .+-|..+
T Consensus 330 ~l~~~~~~~-R~~a~~~~~~~~fl~g-i~~~ls~g~~~fD~~D 370 (439)
T COG0733 330 ALIDKFGIS-RKKATWLIGILIFLLG-IPSILSFGLSIFDLVD 370 (439)
T ss_pred HHHHHhCcc-hHHHHHHHHHHHHHHh-HHHHhcCCchHHHHHH
Confidence 344444443 4455444444444555 44444445 4566655
No 359
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=31.96 E-value=26 Score=26.78 Aligned_cols=13 Identities=0% Similarity=-0.255 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHh
Q 032830 80 FPAAAIWFIGIFLH 93 (132)
Q Consensus 80 iv~~~~~~~~~~~~ 93 (132)
+++.+++- +..+|
T Consensus 144 LvGVLvLQ-aG~~Y 156 (196)
T PF08229_consen 144 LVGVLVLQ-AGQWY 156 (196)
T ss_pred HHHHHHHH-hhHHH
Confidence 33433333 33344
No 360
>PF01252 Peptidase_A8: Signal peptidase (SPase) II This is family A8 in the peptidase classification. ; InterPro: IPR001872 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A8 (signal peptidase II family, clan AC). The catalytic residues have not been identified, but three conserved aspartates can be identified from sequence alignments. The type example is the Escherichia coli lipoprotein signal peptidase or SPase II (3.4.23.36 from EC). This enzyme recognises a conserved sequence and cuts in front of a cysteine residue to which a glyceride-fatty acid lipid is attached. SPase II is an integral membrane protein that is anchored in the membrane. Bacterial cell walls contain large amounts of murein lipoprotein, a small protein that is both N-terminally bound to lipid and attached to membrane peptidoglycan (murein) through the epsilon-amino group of its C-terminal lysine residue []. Secretion of this lipoprotein is facilitated by the action of the lipoprotein signal peptidases in this entry, located in the inner membrane [, ]. They enzyme are inhibited by globomycin and also by pepstatin, suggesting that they are aspartic peptidases [].; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane
Probab=31.87 E-value=50 Score=23.63 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHhhcccchHHH----HHHHHHhhhhH-----H-HHHHHHHHHHHHHHHHHHHHHHH
Q 032830 34 IRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVNNW-----R-ETALILTAILFPAAAIWFIGIFL 92 (132)
Q Consensus 34 ~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g~~-----r-~a~~~~~~~~iv~~~~~~~~~~~ 92 (132)
.+-...++... +|+++|..+ .|.+.|..+ + + ..|.+.=+...++++++.+..+.
T Consensus 82 ~~~~~i~l~li----~gGalgNliDR~~~G~VvDfi~-~~~~~~~~~vFN~AD~~I~~G~ill~~~~~~ 145 (150)
T PF01252_consen 82 SKLLKIGLALI----LGGALGNLIDRLFYGYVVDFID-FHFGGFHFPVFNLADIFIVIGAILLVISILF 145 (150)
T ss_pred chhHHHHHHHH----HhhhhhhHHHHccCCCceEEEE-ccccCCCCCEEEHHHHHHHHHHHHHHHHHHH
Confidence 44555554433 344666654 466777543 2 2 24455555556666665555544
No 361
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=31.74 E-value=1.5e+02 Score=25.95 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.0
Q ss_pred HHHHHHHhhc
Q 032830 41 ISTVSIHIFG 50 (132)
Q Consensus 41 i~~l~~~llG 50 (132)
+..+.++++|
T Consensus 347 l~~~i~~~l~ 356 (524)
T TIGR02005 347 SMATVMYAFG 356 (524)
T ss_pred HHHHHHHHHh
Confidence 3333334444
No 362
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=31.62 E-value=3.3e+02 Score=23.31 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 68 WRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
..+.+.......+...+++.+..++.
T Consensus 193 ~~~~~~~~~p~~i~~~i~~~i~~~~~ 218 (455)
T PRK10654 193 IDFAFKTTLPISIAAIIGMAIAHFFW 218 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555544
No 363
>PRK14785 lipoprotein signal peptidase; Provisional
Probab=31.38 E-value=29 Score=25.75 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----h-HHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 32 PSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----N-WRE-TALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 32 ~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~-~r~-a~~~~~~~~iv~~~~~~~~~~ 91 (132)
...+....++... +|+++|.++ .|++.|.++ + |+| +|.+.-....++++++.+..+
T Consensus 98 ~~~~~~~~~l~lI----lgGAlGNliDRl~~G~VvDFi~~~~~~~~~~pvFNvAD~~I~iGv~llli~~~ 163 (171)
T PRK14785 98 RQAKLLSLGLALV----LGGAIGNLIDRLLHGHVIDFIHVHYADVWHYPIFNIADIGICVGVALIVIDML 163 (171)
T ss_pred ccchHHHHHHHHH----HHHHhhhHHHHHhcCceEEeEEEeecCccCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 3344444554433 344555544 677777642 1 343 566765555555554444333
No 364
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=31.37 E-value=2.9e+02 Score=22.60 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=7.1
Q ss_pred cccchHHHHHHHHH
Q 032830 50 GDVPSSPLVGVLQD 63 (132)
Q Consensus 50 G~~~gP~i~G~l~D 63 (132)
|...|+++++.+.-
T Consensus 260 gs~~G~viGalll~ 273 (344)
T PRK15432 260 GTIIGAVLGAYFLT 273 (344)
T ss_pred CchHHHHHHHHHHH
Confidence 34556665555443
No 365
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=31.09 E-value=1.9e+02 Score=20.30 Aligned_cols=43 Identities=12% Similarity=-0.066 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhhhh----HHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Q 032830 54 SSPLVGVLQDRVNN----WRETALILTAILF--PAAAIWFIGIFLHSVDK 97 (132)
Q Consensus 54 gP~i~G~l~D~~g~----~r~a~~~~~~~~i--v~~~~~~~~~~~~~~~~ 97 (132)
+-+..| |+|++|- .|..+.+..++.. ...+++++++++..++.
T Consensus 14 ~GVcaG-lA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p 62 (121)
T TIGR02978 14 AGVCAG-LADYFGVEVWLVRILVVSALLFGGGFFVLVAYIALWLLLDKKP 62 (121)
T ss_pred hhHHHH-HHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 333334 8888871 4444433322211 12234666665553333
No 366
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=31.03 E-value=77 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830 45 SIHIFGDVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 45 ~~~llG~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
...+++ .+++++.|.+.|++..-|..+
T Consensus 54 ~~P~v~-~L~~P~~g~~Adr~r~~r~ll 80 (618)
T KOG3762|consen 54 TLPLVE-FLAAPLWGFLADRYRKRRPLL 80 (618)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHhcCchh
Confidence 345555 778899999999987333333
No 367
>PF15179 Myc_target_1: Myc target protein 1
Probab=30.73 E-value=1.1e+02 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 032830 68 WRETALIL-TAILFPAAAIWFIGIFLHSVD 96 (132)
Q Consensus 68 ~r~a~~~~-~~~~iv~~~~~~~~~~~~~~~ 96 (132)
+-.+|.+. .+.++++++++.+..|+.|+|
T Consensus 21 lIlaF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455442 556788888888888877444
No 368
>PRK14793 lipoprotein signal peptidase; Provisional
Probab=30.71 E-value=43 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=19.8
Q ss_pred hcccchHHH----HHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVNNW--RETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g~~--r~a~~~~~~~~iv~~~~~~~~ 89 (132)
+|+++|.++ .|++.|..+ + -.+|.+.-....++++++.+.
T Consensus 93 ~gGalGNliDR~~~G~VvDfi~-~~~~pvFNvAD~~I~iGv~lll~~ 138 (150)
T PRK14793 93 GGGALGNLYDRLRIGKVVDFLD-FRIWPVFNIADSAIVIGVGLLMWL 138 (150)
T ss_pred HHHHHhhHHHHHhcCceEEEEe-ccccceeeHHHHHHHHHHHHHHHH
Confidence 344555543 566666544 3 235666544445554444433
No 369
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=30.51 E-value=3.5e+02 Score=23.27 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=19.1
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHH---HHhhcccchHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVS---IHIFGDVPSSPLV 58 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~---~~llG~~~gP~i~ 58 (132)
.|.--.+.+-..-..+..+..+..-. .+.+-|-|||+..
T Consensus 123 ~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP~Pgpia~ 164 (442)
T COG2610 123 IPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPPHPGPIAA 164 (442)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCCCCchhhh
Confidence 44444445555545555444443322 2344467777653
No 370
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=30.46 E-value=1.3e+02 Score=25.25 Aligned_cols=9 Identities=0% Similarity=-0.300 Sum_probs=4.6
Q ss_pred hcccchHHH
Q 032830 49 FGDVPSSPL 57 (132)
Q Consensus 49 lG~~~gP~i 57 (132)
+.+..+|..
T Consensus 152 ~~P~g~p~~ 160 (431)
T TIGR00784 152 MIPWGGPTT 160 (431)
T ss_pred ceeCCchHH
Confidence 445555554
No 371
>PRK14779 lipoprotein signal peptidase; Provisional
Probab=29.44 E-value=50 Score=24.12 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=23.2
Q ss_pred hcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 032830 49 FGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGIFLHSV 95 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~~~~~~ 95 (132)
+|+++|..+ .|.+.|..+ +++| +|.+.-....++.+++.+..++.++
T Consensus 99 lgGaiGNliDRl~~G~VvDFi~~~~~~~~~pvFNvAD~~I~iGv~lll~~~~~~~~ 154 (159)
T PRK14779 99 GGGALGNLYDRFFLGQVRDFIDIYIGDFHWPAFNIADASISIGIALFILYEHFFKK 154 (159)
T ss_pred HHHHHhhHHHHHhcCceEEEEEEeecCCCCceEEHHHHHHHHHHHHHHHHHHHhhc
Confidence 454555544 466666532 2333 5666655555555554444444433
No 372
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=29.44 E-value=1.3e+02 Score=21.14 Aligned_cols=25 Identities=4% Similarity=0.054 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 66 NNWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 66 g~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
+-+.-++...+.+.-.+...+++..
T Consensus 69 DPlPQALILTAIVIgfa~tal~L~l 93 (115)
T COG1006 69 DPLPQALILTAIVIGFATTALALVL 93 (115)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3377777776554444444444333
No 373
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.31 E-value=43 Score=24.56 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHhhh
Q 032830 52 VPSSPLVGVLQDRVN 66 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g 66 (132)
..|-++.|.+.|++|
T Consensus 103 i~gQli~glliD~fG 117 (150)
T COG3238 103 IAGQLIMGLLIDHFG 117 (150)
T ss_pred HHHHHHHHHHHHhhc
Confidence 447888999999998
No 374
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=28.52 E-value=2.9e+02 Score=21.70 Aligned_cols=8 Identities=0% Similarity=-0.425 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 032830 68 WRETALIL 75 (132)
Q Consensus 68 ~r~a~~~~ 75 (132)
||+++.+.
T Consensus 193 Rr~~~v~~ 200 (258)
T PRK10921 193 RPYVLVGA 200 (258)
T ss_pred CcHHhHHH
Confidence 77776653
No 375
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=28.52 E-value=2.1e+02 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 032830 78 ILFPAAAIWFIGIFLHS 94 (132)
Q Consensus 78 ~~iv~~~~~~~~~~~~~ 94 (132)
+++++.++|++...+.|
T Consensus 73 FlIiA~vvF~~vk~~~k 89 (119)
T PRK13954 73 FIIIAFALFIFVKIANT 89 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666665554444
No 376
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=28.34 E-value=2e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=-0.058 Sum_probs=18.0
Q ss_pred HHHhhhh----HHHHHHHHHHHH--HHHHHHHHHHHHHhhccc
Q 032830 61 LQDRVNN----WRETALILTAIL--FPAAAIWFIGIFLHSVDK 97 (132)
Q Consensus 61 l~D~~g~----~r~a~~~~~~~~--iv~~~~~~~~~~~~~~~~ 97 (132)
|+|++|- .|..+....++. ..+.+++++.+++..++.
T Consensus 25 iA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P 67 (118)
T PRK10697 25 IAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYIILSFALDPMP 67 (118)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhccCCc
Confidence 7888871 344333222221 234455666666554444
No 377
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=28.30 E-value=3.1e+02 Score=21.84 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032830 51 DVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD 96 (132)
Q Consensus 51 ~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~~~~ 96 (132)
+...|...-.....+| |++++.-.....+++.+.-.+..++.+++
T Consensus 94 p~~n~~~~~~~~~~lg-~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 94 PLLNPIVLLLTWAALG-WKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred HHhhHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4555655555555567 77777765444444433333333343333
No 378
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.21 E-value=2.5e+02 Score=22.17 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=4.8
Q ss_pred Hhhccccccccc
Q 032830 92 LHSVDKFSEDNE 103 (132)
Q Consensus 92 ~~~~~~~~~~~e 103 (132)
+.+++...+-.|
T Consensus 105 iF~~eI~~~l~~ 116 (301)
T PF14362_consen 105 IFEKEIDQKLDE 116 (301)
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 379
>PRK14768 lipoprotein signal peptidase; Provisional
Probab=28.04 E-value=30 Score=25.03 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=23.4
Q ss_pred hcccchHHH----HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVN---NWRETALILTAILFPAAAIWFIGI 90 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g---~~r~a~~~~~~~~iv~~~~~~~~~ 90 (132)
+|+++|.++ .|++.|..+ .|.++|.+.-....++++++.+..
T Consensus 92 ~gGa~GNliDR~~~G~VvDfi~~~~~~~~vFNvAD~~I~iG~~lll~~~ 140 (148)
T PRK14768 92 ISGALGNLIDRVRLGFVVDYFDFRVIWEYVFNVADVFVVVGTVFLCIYV 140 (148)
T ss_pred HHHHHhhHHHHhhcCceEEEEEeeecCccEEEHHHHHHHHHHHHHHHHH
Confidence 455656544 566777543 145577777555555655544433
No 380
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=28.01 E-value=1.4e+02 Score=23.02 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 50 GDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 50 G~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
|....-+|.|.+---.+ |.+.=.++.+.++.-+++|++..|=+
T Consensus 9 ~~ga~~vi~GalfKi~h-~~~~~~~l~~g~~te~lvFfiSAFe~ 51 (202)
T TIGR03513 9 GWGAAVVILGALFKIMH-WPMGNPMLFVGLITEALIFAISAFEK 51 (202)
T ss_pred HHhHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHhccCC
Confidence 34446677788887777 77666666666777777888777644
No 381
>PF15050 SCIMP: SCIMP protein
Probab=27.91 E-value=92 Score=22.22 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=5.5
Q ss_pred HHHHHHHH
Q 032830 68 WRETALIL 75 (132)
Q Consensus 68 ~r~a~~~~ 75 (132)
||--|+++
T Consensus 4 Wr~nFWii 11 (133)
T PF15050_consen 4 WRDNFWII 11 (133)
T ss_pred HHhchHHH
Confidence 77777764
No 382
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=27.62 E-value=1.3e+02 Score=18.21 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=25.7
Q ss_pred HhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830 15 VFATQGPVNFICLHCVKPSIRPLSMAISTVSIH 47 (132)
Q Consensus 15 ~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ 47 (132)
....+++...+....+|++.|-...++..++-+
T Consensus 27 ~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~ 59 (68)
T PF04117_consen 27 SWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWN 59 (68)
T ss_pred HhHhHHHHHHHHhcccChhhhhhhhhhHHHHHH
Confidence 344578888899999999999988887766543
No 383
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=27.46 E-value=1.3e+02 Score=20.67 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHhhccccccccccccccc
Q 032830 88 IGIFLHSVDKFSEDNEDKVSRI 109 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~e~~~~~~ 109 (132)
++.|+.|.+..|..+..+|++.
T Consensus 67 ~~ly~~RP~s~R~~~~~~Kp~~ 88 (103)
T PF11027_consen 67 MALYLLRPSSLRSRSADGKPSN 88 (103)
T ss_pred HHHHHcCchhhcCCCCCCCCCC
Confidence 3445556667766655555553
No 384
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=27.46 E-value=1.4e+02 Score=17.73 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=11.9
Q ss_pred ccchHHHHHHHHHhhhhHHHHH
Q 032830 51 DVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 51 ~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
..+|-.+.-++.+..| +.+..
T Consensus 11 ~~lGt~~~D~l~~~lg-lg~~~ 31 (55)
T PF03988_consen 11 TTLGTTAGDFLSKTLG-LGYLI 31 (55)
T ss_pred HHhHHHHHHHHHhccC-ccHHH
Confidence 4556666666666555 54433
No 385
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=27.25 E-value=2.8e+02 Score=21.11 Aligned_cols=20 Identities=15% Similarity=-0.185 Sum_probs=8.4
Q ss_pred HHHHhHhhcCCCCchHHHHH
Q 032830 22 VNFICLHCVKPSIRPLSMAI 41 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi 41 (132)
..+-..+--|...+..+.++
T Consensus 41 ~la~~~r~~p~~~~~~~~~i 60 (211)
T PF13194_consen 41 SLARRSRENPELSRLLAAGI 60 (211)
T ss_pred HHHHHHhhCcchhHHHHHHH
Confidence 33333344444444444444
No 386
>PRK04570 cell division protein ZipA; Provisional
Probab=27.07 E-value=1.7e+02 Score=23.20 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 032830 82 AAAIWFIGIFLH 93 (132)
Q Consensus 82 ~~~~~~~~~~~~ 93 (132)
+++++..+++++
T Consensus 14 ~~~~~~~~~~~~ 25 (243)
T PRK04570 14 AGLLLVAAIFLF 25 (243)
T ss_pred HHHHHHHHHHHh
Confidence 334444444444
No 387
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=26.98 E-value=2.2e+02 Score=25.30 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=21.4
Q ss_pred hcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHH
Q 032830 29 CVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 29 ~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D 63 (132)
+..++.++.|.--.+...+ .|..++-.++=.+.|
T Consensus 146 ~Ls~~n~~~ASTcqtvG~~-~Gyfls~tvFlalns 179 (544)
T PF13000_consen 146 MLSPENVGYASTCQTVGQT-AGYFLSFTVFLALNS 179 (544)
T ss_pred hcChhhcchHHHHHHhHhh-hhHHHHHHHHHhhCC
Confidence 3466777777765555554 566667666655555
No 388
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.77 E-value=26 Score=26.36 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 032830 68 WRETALILT 76 (132)
Q Consensus 68 ~r~a~~~~~ 76 (132)
|+|+|+++.
T Consensus 3 WK~aF~~Ll 11 (187)
T PF09911_consen 3 WKWAFLILL 11 (187)
T ss_pred HHHHHHHHH
Confidence 999999863
No 389
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=26.61 E-value=1.4e+02 Score=25.24 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=6.5
Q ss_pred cccchHHHHHHHH
Q 032830 50 GDVPSSPLVGVLQ 62 (132)
Q Consensus 50 G~~~gP~i~G~l~ 62 (132)
+++.|-+..|...
T Consensus 332 ~Gi~G~i~~glf~ 344 (404)
T TIGR03644 332 AGIWGTLVVPITN 344 (404)
T ss_pred HHHHHHHHHHHhc
Confidence 3455555555543
No 390
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=26.28 E-value=66 Score=27.55 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=13.9
Q ss_pred chHHHHHHHHHhhhhHHHHHHHH
Q 032830 53 PSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 53 ~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.-+++.|++... |+||...+-.
T Consensus 392 tP~~l~~fl~t~-g~~~~~ilq~ 413 (452)
T PRK10297 392 MPTGLGAFFNTN-GSVAALLVAL 413 (452)
T ss_pred CcHHHHHHHhcC-CCHHHHHHHH
Confidence 345567877543 4498887654
No 391
>PRK14792 lipoprotein signal peptidase; Provisional
Probab=26.11 E-value=34 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=19.9
Q ss_pred hcccchHHH----HHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVNNWR----ETALILTAILFPAAAIWFI 88 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g~~r----~a~~~~~~~~iv~~~~~~~ 88 (132)
+|+++|.++ .|++.|..+ ++ .+|.+.-+...++++++.+
T Consensus 101 ~gGalGNliDRl~~G~VvDFi~-~~~~~~pvFNvAD~~I~iGv~lll~ 147 (159)
T PRK14792 101 LGGTLGNGIDRWRLGYVIDFLN-LVPINFPIFNIADIAINIAVICFII 147 (159)
T ss_pred HHHHHhhHHHHHhcCCeEEEEE-eeecCCceeeHHHHHHHHHHHHHHH
Confidence 444555544 566666543 32 2566665444555444433
No 392
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=25.81 E-value=1.7e+02 Score=24.73 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=10.4
Q ss_pred HhhcccchHHHHHHHHH
Q 032830 47 HIFGDVPSSPLVGVLQD 63 (132)
Q Consensus 47 ~llG~~~gP~i~G~l~D 63 (132)
|.++.+.|-+..|...+
T Consensus 316 Hg~~Gi~G~i~~glfa~ 332 (403)
T TIGR00836 316 HGVGGIWGLIATGLFAA 332 (403)
T ss_pred hhhhHHHHHHHHHHhcc
Confidence 34455667777776654
No 393
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=25.75 E-value=23 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=0.0
Q ss_pred cCCCCccccccccchhhh
Q 032830 110 ERSKTTPLLEDEKAETTQ 127 (132)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~ 127 (132)
++|.++.---+|++|.-|
T Consensus 254 ~eedNEiSMLq~~~~e~~ 271 (273)
T PF02404_consen 254 NEEDNEISMLQEKEREFQ 271 (273)
T ss_dssp ------------------
T ss_pred cchhhHHHHHHhhhhhhh
Confidence 455555555566666543
No 394
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=25.59 E-value=61 Score=28.19 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=42.3
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
.+..++-.++..|.+.+.+.+++..... .+...||++.-.+-...| .|+...+..+.+++
T Consensus 407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s-~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 407 TALDTLYSKILGPRDQGTMQGVFSISGS-IARVVGPIFSTAIFTLSG-PRPVWIILLCLLLV 466 (488)
T ss_pred chHHHHHHHHhCCccccceeEEEEeccc-hhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHH
Confidence 4466778899999999999998877643 567777777666655566 77776665443333
No 395
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.47 E-value=2.7e+02 Score=20.26 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 032830 5 LALFAVGELLV 15 (132)
Q Consensus 5 ~~~~~l~~~~~ 15 (132)
.+++.++.++.
T Consensus 13 ~ill~lG~~f~ 23 (145)
T PRK12586 13 AIMILLGSIIA 23 (145)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 396
>PF14851 FAM176: FAM176 family
Probab=25.43 E-value=2.8e+02 Score=20.38 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=3.2
Q ss_pred HHHHHh
Q 032830 59 GVLQDR 64 (132)
Q Consensus 59 G~l~D~ 64 (132)
.+|.|+
T Consensus 13 a~I~~~ 18 (153)
T PF14851_consen 13 AHIRDN 18 (153)
T ss_pred HHHHhC
Confidence 455554
No 397
>TIGR00077 lspA lipoprotein signal peptidase. Alternate name: lipoprotein signal peptidase
Probab=25.13 E-value=81 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=21.1
Q ss_pred hcccchHHH----HHHHHHhhh----hHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVN----NWRE-TALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g----~~r~-a~~~~~~~~iv~~~~~~~~~~ 91 (132)
+|+++|.++ .|++.|.++ +|+| +|.+.=....++.+++.+..+
T Consensus 106 lgGalGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iGv~lll~~~~ 157 (166)
T TIGR00077 106 FGGALGNFIDRLVRGGVVDFFDFYFGNYHFPIFNFADSSICIGVILLLLYFF 157 (166)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeecCCCCCceeEHHHHHHHHHHHHHHHHHH
Confidence 344555543 466666532 2332 566665445555544444333
No 398
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=25.13 E-value=2.5e+02 Score=19.72 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHH
Q 032830 36 PLSMAISTVSIHIFGDVPSSPLVGVL 61 (132)
Q Consensus 36 ~~a~gi~~l~~~llG~~~gP~i~G~l 61 (132)
+...|........++...|....|++
T Consensus 76 Aq~iG~~f~~~~~~~~~~g~~~~~~i 101 (131)
T PF14340_consen 76 AQGIGLVFLGVALVAFLLGWPVAGYI 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34444444333333333333333333
No 399
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.86 E-value=62 Score=24.32 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHH
Q 032830 37 LSMAISTVSIHIFGDVPSSPLVGVL 61 (132)
Q Consensus 37 ~a~gi~~l~~~llG~~~gP~i~G~l 61 (132)
.++|+..++...+|.++||.++..+
T Consensus 78 ~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 78 MVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5677777777778888888776554
No 400
>PRK14797 lipoprotein signal peptidase; Provisional
Probab=24.82 E-value=43 Score=24.23 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHH
Q 032830 32 PSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVNNWR----ETALILTAILFPAAAIWFIG 89 (132)
Q Consensus 32 ~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g~~r----~a~~~~~~~~iv~~~~~~~~ 89 (132)
++.+....++... +|+++|.++ .|++.|... ++ .+|.+.-....++.+++.+.
T Consensus 81 ~~~~~~~~~l~lI----lgGaiGNliDR~~~G~VvDfi~-~~~~~~piFNvAD~~I~iG~~lll~~ 141 (150)
T PRK14797 81 YKNIWFLLGLTLI----IAGGIGNFIDRLRLGYVVDMFH-LDFINFAIFNVADSYLTVGVILLLIC 141 (150)
T ss_pred cccHHHHHHHHHH----HHHHHhhHHHHhhCCeEEEeEE-ccccCCceEEHHHHHHHHHHHHHHHH
Confidence 3344444554433 344555543 466666533 22 25666554445554444443
No 401
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=24.73 E-value=1.1e+02 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchH-HHHHHHHHHHhhcccchHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPL-SMAISTVSIHIFGDVPSSPLVG 59 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~-a~gi~~l~~~llG~~~gP~i~G 59 (132)
++++.+.+.=+..-...+|.=+.+.|...++.+.+ |.+.+.+.+. +|..+|-.+.+
T Consensus 144 ~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a-vGnvLGY~~g~ 200 (498)
T KOG0637|consen 144 LFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA-VGNVLGYALGS 200 (498)
T ss_pred HHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH-hcceeeeeccc
Confidence 34444455555556777899999999999877777 9999998885 67677766554
No 402
>PF14002 YniB: YniB-like protein
Probab=24.64 E-value=44 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccccccc
Q 032830 68 WRETALILTAILFPAAAIWFIGIFLHSVDK-FSEDNEDKVS 107 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~-~~~~~e~~~~ 107 (132)
-...|++.-...+++..+...+..++|+-| -||.-||+--
T Consensus 73 ~ni~F~vIy~liFvGlAL~aSG~rm~rqvk~ire~IEdqlI 113 (166)
T PF14002_consen 73 SNIMFWVIYLLIFVGLALQASGARMSRQVKFIREGIEDQLI 113 (166)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHH
Confidence 345566555555666666666666554444 5555555433
No 403
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=24.59 E-value=39 Score=29.77 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=33.2
Q ss_pred hcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 49 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 49 lG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
+|..++-.+.-++-|..+ |.+.|-++++...++.++|+....+|
T Consensus 205 ~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g~~~y 248 (571)
T KOG1237|consen 205 GGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPGFPFY 248 (571)
T ss_pred HHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcCceeE
Confidence 455666666677777777 99999999888888888877666555
No 404
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=24.52 E-value=2.1e+02 Score=20.64 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 032830 68 WRETALILTAIL 79 (132)
Q Consensus 68 ~r~a~~~~~~~~ 79 (132)
|.-.++..+..+
T Consensus 82 WNilMYaIPy~L 93 (141)
T PRK13743 82 WNILMYVIPYTL 93 (141)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 405
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=24.27 E-value=3.5e+02 Score=21.14 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=17.8
Q ss_pred HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHH
Q 032830 42 STVSIHIFGDVPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 42 ~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
...+.+ +|..+| ++.|.+.|+++ -+..+.+
T Consensus 42 l~~~~~-~G~~~G-~~~G~l~d~~g-p~~~l~i 71 (250)
T PF06813_consen 42 LSTAGD-IGSYFG-ILAGLLYDRFG-PWVVLLI 71 (250)
T ss_pred HHHHHH-HHhhcc-HHHHHHHHhcc-hHHHHHH
Confidence 333444 455566 55799999988 4443333
No 406
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1e+02 Score=27.12 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccccccccc
Q 032830 68 WRETALILTAILFPAAAIWFIGIFLHSVDK--FSEDNEDKVSR 108 (132)
Q Consensus 68 ~r~a~~~~~~~~iv~~~~~~~~~~~~~~~~--~~~~~e~~~~~ 108 (132)
|=.+|.-+..+.++.+++..+..+..|++- |.+|+|+.+..
T Consensus 226 WfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~ 268 (593)
T KOG1277|consen 226 WFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDM 268 (593)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccc
Confidence 666666433223333344444444445554 77888865444
No 407
>PRK14790 lipoprotein signal peptidase; Provisional
Probab=24.15 E-value=80 Score=23.38 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=21.1
Q ss_pred hcccchHHH----HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHH
Q 032830 49 FGDVPSSPL----VGVLQDRVNNWR--ETALILTAILFPAAAIWFI 88 (132)
Q Consensus 49 lG~~~gP~i----~G~l~D~~g~~r--~a~~~~~~~~iv~~~~~~~ 88 (132)
+|+++|.++ .|++.|.++ ++ .+|.+.-....++++++.+
T Consensus 106 lgGAlGNliDRl~~G~VvDFi~-~~~~pvFNvAD~~I~iG~~llii 150 (169)
T PRK14790 106 LGGALGNVIDRIRLGYVVDFIQ-VGWFPIFNLADSAITVGAALLML 150 (169)
T ss_pred HHHHHHhHHHHHhcCceEeeee-eccchhhhHHHHHHHHHHHHHHH
Confidence 344555544 577777654 33 3666665555555544443
No 408
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=24.13 E-value=2.4e+02 Score=19.19 Aligned_cols=7 Identities=0% Similarity=-0.310 Sum_probs=4.1
Q ss_pred HHHHHHH
Q 032830 68 WRETALI 74 (132)
Q Consensus 68 ~r~a~~~ 74 (132)
++|.|.+
T Consensus 50 lQWIFAF 56 (97)
T PF08611_consen 50 LQWIFAF 56 (97)
T ss_pred HHHHHHH
Confidence 6666654
No 409
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=24.06 E-value=2.5e+02 Score=19.37 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHhhc
Q 032830 35 RPLSMAISTVSIHIFG 50 (132)
Q Consensus 35 R~~a~gi~~l~~~llG 50 (132)
.+.++++....+..++
T Consensus 52 ~alav~lai~~M~~~~ 67 (120)
T PF04982_consen 52 AALAVGLAIVLMVLTR 67 (120)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3566666666666665
No 410
>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=23.89 E-value=1.4e+02 Score=22.19 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=31.6
Q ss_pred hhcCCCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhh----hhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 032830 28 HCVKPSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRV----NNWR-ETALILTAILFPAAAIWFIGIFLH 93 (132)
Q Consensus 28 ~~vp~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~----g~~r-~a~~~~~~~~iv~~~~~~~~~~~~ 93 (132)
...+++.+=...++... +|+++|..+ -|.+.|.. ++|. .+|.+.-+...++++++.+..++.
T Consensus 88 ~~~~~~~~~~~i~~~lI----igGAlGN~iDR~~~g~VvDfi~~~~~~~~fpiFNlAD~~I~iG~illil~~~~~ 158 (167)
T COG0597 88 IRLKKSRKLYAIALALI----IGGALGNLIDRLFRGFVVDFIDFHYGNWHFPIFNLADVFISVGVILLVLDSFLS 158 (167)
T ss_pred HHhhcccHHHHHHHHHH----HHHHHHHHHHHhhhcccceEEEEecCccccceeehhHHHHHHhHHHHHHHHHhh
Confidence 33344443344554333 344555543 45566643 2354 455566556666666666555544
No 411
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=23.75 E-value=1.3e+02 Score=17.45 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=5.7
Q ss_pred HHHHHhhhhH
Q 032830 59 GVLQDRVNNW 68 (132)
Q Consensus 59 G~l~D~~g~~ 68 (132)
||+..++.++
T Consensus 31 gWVLshL~~Y 40 (44)
T PF02285_consen 31 GWVLSHLESY 40 (44)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655433
No 412
>COG4327 Predicted membrane protein [Function unknown]
Probab=23.64 E-value=1.1e+02 Score=20.84 Aligned_cols=10 Identities=10% Similarity=0.239 Sum_probs=7.7
Q ss_pred hhHHHHHHHHH
Q 032830 66 NNWRETALILT 76 (132)
Q Consensus 66 g~~r~a~~~~~ 76 (132)
| |...|++..
T Consensus 49 g-~pf~ywma~ 58 (101)
T COG4327 49 G-WPFGYWMAQ 58 (101)
T ss_pred c-cchhhhhhc
Confidence 5 888888863
No 413
>COG4854 Predicted membrane protein [Function unknown]
Probab=23.63 E-value=26 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=15.7
Q ss_pred HhhccccccccccccccccCCCC
Q 032830 92 LHSVDKFSEDNEDKVSRIERSKT 114 (132)
Q Consensus 92 ~~~~~~~~~~~e~~~~~~~~~~~ 114 (132)
.+.++|.++..|||+.++-+|+.
T Consensus 46 ~l~k~Rv~~vvEDER~lrvse~a 68 (126)
T COG4854 46 SLVKRRVDEVVEDERTLRVSERA 68 (126)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhh
Confidence 33567777889999888644443
No 414
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.43 E-value=3.3e+02 Score=20.52 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 032830 80 FPAAAIWFIGIF 91 (132)
Q Consensus 80 iv~~~~~~~~~~ 91 (132)
+.++++++...+
T Consensus 74 IaGGiiL~~ia~ 85 (203)
T PF01914_consen 74 IAGGIILFLIAL 85 (203)
T ss_pred HHHHHHHHHHHH
Confidence 445555544443
No 415
>PRK14773 lipoprotein signal peptidase; Provisional
Probab=23.38 E-value=73 Score=24.19 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh----h---HHH-HHHHHHHHHHHHHHHHHH
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN----N---WRE-TALILTAILFPAAAIWFI 88 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g----~---~r~-a~~~~~~~~iv~~~~~~~ 88 (132)
..+....++..+ +|+++|.++ -|+++|..+ + ++| +|.+.-....++++++.+
T Consensus 118 ~~~~~~ialsLI----lgGAiGNlIDRi~~G~VvDFI~~~~~~~~~~~~pvFNiAD~~I~iGv~llli 181 (192)
T PRK14773 118 EQRYLQVALALV----LGGAVGNFVDRLARGYVIDFIEWYWWNRPDIRWPTFNVADSLIVVGVAMLVL 181 (192)
T ss_pred ccHHHHHHHHHH----HHHHHHhHHHHhhcCceEEEEEEEEcCcccccCCEEEHHHHHHHHHHHHHHH
Confidence 344445554433 344555543 466777542 1 222 466665444555444433
No 416
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.34 E-value=4.2e+02 Score=21.77 Aligned_cols=13 Identities=15% Similarity=-0.074 Sum_probs=5.9
Q ss_pred hHHHHHhHhhcCC
Q 032830 20 GPVNFICLHCVKP 32 (132)
Q Consensus 20 ~~~~~ii~~~vp~ 32 (132)
+..+.++.+....
T Consensus 68 tag~smL~~~~ke 80 (311)
T COG3366 68 TAGNSMLSEFYKE 80 (311)
T ss_pred hhhHHHHHHHHHc
Confidence 3344455444443
No 417
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.34 E-value=5.1e+02 Score=22.72 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHhh--hhHHHHHHH
Q 032830 37 LSMAISTVSIHIFGDVPSSPLVGVLQDRV--NNWRETALI 74 (132)
Q Consensus 37 ~a~gi~~l~~~llG~~~gP~i~G~l~D~~--g~~r~a~~~ 74 (132)
...|+..-..+.++.-++|++.|++..-. .|+|-++.+
T Consensus 418 ~~fG~lgY~~~kl~~p~aPllLg~VLGpl~E~nlRrAL~i 457 (504)
T COG3333 418 LGFGLLGYLLRKLGFPLAPLLLGFVLGPLAEQNLRRALLI 457 (504)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHhhHHHHHHHHHHHhh
Confidence 44555555667788888999988876543 125555543
No 418
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=23.26 E-value=1.5e+02 Score=20.06 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHhhhhHHHHHHHH
Q 032830 59 GVLQDRVNNWRETALIL 75 (132)
Q Consensus 59 G~l~D~~g~~r~a~~~~ 75 (132)
|---|..+ |+..+++.
T Consensus 51 G~~~d~e~-we~~~f~~ 66 (105)
T PF10183_consen 51 GEKRDWEG-WELPFFFG 66 (105)
T ss_pred CCcchHhh-hHHHHHHH
Confidence 44566667 99999985
No 419
>PRK01821 hypothetical protein; Provisional
Probab=23.20 E-value=2.8e+02 Score=19.72 Aligned_cols=16 Identities=13% Similarity=-0.054 Sum_probs=8.8
Q ss_pred hcccchHHHHHHHHHhh
Q 032830 49 FGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 49 lG~~~gP~i~G~l~D~~ 65 (132)
++..+=|.-+| +++++
T Consensus 71 m~LfFVPa~VG-im~~~ 86 (133)
T PRK01821 71 MALLFVPIGVG-VMQYY 86 (133)
T ss_pred HHHHHhhhHHH-HHHHH
Confidence 45555666666 44444
No 420
>PRK14777 lipoprotein signal peptidase; Provisional
Probab=23.12 E-value=54 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhh
Q 032830 33 SIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVN 66 (132)
Q Consensus 33 ~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g 66 (132)
+.+....++... +|+++|.++ .|++.|.++
T Consensus 107 ~~~~~~~al~LI----lgGAiGNliDRl~~G~VvDFi~ 140 (184)
T PRK14777 107 QPRFLTVVLSLI----AAGAIGNAIDGLRFGRVTDMLH 140 (184)
T ss_pred cchHHHHHHHHH----HHHHHHhHHHHhhcCceEEEEE
Confidence 344444554333 444555544 577777544
No 421
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=23.06 E-value=5.3e+02 Score=22.76 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=27.6
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 24 FICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 24 ~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
...-++..-++-.+-.+++++..|+ +..++..+.++++.+
T Consensus 171 ~faNeitt~~eakRFy~lf~l~~ni-~lllsg~~~~~~~k~ 210 (509)
T COG3202 171 QFANEITTIEEAKRFYPLFGLGANI-SLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHhhhHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 3444666667788899999988874 556666666666664
No 422
>PRK14786 lipoprotein signal peptidase; Provisional
Probab=23.00 E-value=1.1e+02 Score=22.29 Aligned_cols=52 Identities=4% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHHHhhcccchHHH----HHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHH
Q 032830 32 PSIRPLSMAISTVSIHIFGDVPSSPL----VGVLQDRVNNWR----ETALILTAILFPAAAIWFI 88 (132)
Q Consensus 32 ~~~R~~a~gi~~l~~~llG~~~gP~i----~G~l~D~~g~~r----~a~~~~~~~~iv~~~~~~~ 88 (132)
+.++....++... +|+++|.++ .|++.|.++ ++ .+|.+.-....++.+++.+
T Consensus 81 ~~~~~~~~al~lI----~gGalGNliDRi~~G~VvDfi~-~~~~~~pvFNvAD~~I~~G~~ll~~ 140 (154)
T PRK14786 81 TGEVAFKLSLAII----IGGALGNLIDRVRLNYVTDFLD-FTLINYPIFNLADVFVVSGVVMLSY 140 (154)
T ss_pred cccHHHHHHHHHH----HHHHHHhHHHHhhcCCeEEEEE-eeecCCceeeHHHHHHHHHHHHHHH
Confidence 3444444554433 344555543 466677554 32 3566654444555444433
No 423
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=22.99 E-value=3.5e+02 Score=20.64 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=15.2
Q ss_pred cchhHHHHHhHhhcCCCCchHHHH
Q 032830 17 ATQGPVNFICLHCVKPSIRPLSMA 40 (132)
Q Consensus 17 ~~~~~~~~ii~~~vp~~~R~~a~g 40 (132)
.+..|....+..-.++++|-+..-
T Consensus 21 ~G~ipvf~slt~~~~~~~r~~v~~ 44 (203)
T COG2095 21 IGNLPVFISLTKGLSPEERNRVAL 44 (203)
T ss_pred CchhHHHHHHHcCCCHHHHHHHHH
Confidence 344566667777777777765543
No 424
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.96 E-value=1.1e+02 Score=21.71 Aligned_cols=10 Identities=0% Similarity=0.258 Sum_probs=4.9
Q ss_pred Hhhccccccc
Q 032830 92 LHSVDKFSED 101 (132)
Q Consensus 92 ~~~~~~~~~~ 101 (132)
.+++++||++
T Consensus 44 ~~~~~~yrr~ 53 (146)
T PF14316_consen 44 RWRRNRYRRE 53 (146)
T ss_pred HHHccHHHHH
Confidence 3355556543
No 425
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=22.95 E-value=1.2e+02 Score=20.16 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032830 72 ALILTAILFPAAAIWFIGIF 91 (132)
Q Consensus 72 ~~~~~~~~iv~~~~~~~~~~ 91 (132)
+.+|+++.++-+++|....+
T Consensus 38 LVic~~lVfVii~lFi~ll~ 57 (84)
T PF06143_consen 38 LVICCFLVFVIIVLFILLLY 57 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 426
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=22.70 E-value=1.1e+02 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=18.2
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhhcccchHH
Q 032830 25 ICLHCVKPSIRPLSMAISTVSIHIFGDVPSSP 56 (132)
Q Consensus 25 ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~ 56 (132)
..-+.+++++|-.|-.+..+.. .+|...|..
T Consensus 396 ~~p~~v~~~e~e~aG~~~~~~l-~~Gl~~Gs~ 426 (437)
T TIGR00939 396 LAPRQVDPHEREVAGALMVIFL-LVGLALGAV 426 (437)
T ss_pred hcCCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3335566677777777666664 356444444
No 427
>PRK15049 L-asparagine permease; Provisional
Probab=22.60 E-value=1.7e+02 Score=24.88 Aligned_cols=7 Identities=14% Similarity=-0.339 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 032830 68 WRETALI 74 (132)
Q Consensus 68 ~r~a~~~ 74 (132)
.|+...+
T Consensus 447 ~~~~~~~ 453 (499)
T PRK15049 447 GTYTIAA 453 (499)
T ss_pred hHHHHHH
Confidence 4444443
No 428
>PRK10995 inner membrane protein; Provisional
Probab=21.97 E-value=3.6e+02 Score=20.48 Aligned_cols=23 Identities=4% Similarity=-0.278 Sum_probs=12.4
Q ss_pred chHHHHHHHHHhhhhHHHHHHHH
Q 032830 53 PSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 53 ~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
..-..+..+.+.+|-...+|-+.
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIa 79 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIA 79 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555566777776333444443
No 429
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=21.88 E-value=1e+02 Score=17.80 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHhhh
Q 032830 59 GVLQDRVN 66 (132)
Q Consensus 59 G~l~D~~g 66 (132)
||+..++.
T Consensus 31 gWVLshL~ 38 (43)
T cd00930 31 GWVLSHLE 38 (43)
T ss_pred HHHHHHHH
Confidence 55555443
No 430
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=21.81 E-value=1e+02 Score=25.35 Aligned_cols=14 Identities=29% Similarity=0.346 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q 032830 80 FPAAAIWFIGIFLH 93 (132)
Q Consensus 80 iv~~~~~~~~~~~~ 93 (132)
+++.++..++...|
T Consensus 290 ~~af~lIiiG~vvy 303 (334)
T PF06027_consen 290 ILAFALIIIGFVVY 303 (334)
T ss_pred HHHHHHHHHHhheE
Confidence 33433333344333
No 431
>PHA03231 glycoprotein BALF4; Provisional
Probab=21.71 E-value=1e+02 Score=28.66 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=3.4
Q ss_pred cchHHHHH
Q 032830 52 VPSSPLVG 59 (132)
Q Consensus 52 ~~gP~i~G 59 (132)
+++.++.|
T Consensus 688 a~~SiVsG 695 (829)
T PHA03231 688 AVGSIVSG 695 (829)
T ss_pred HHHHHHHH
Confidence 44444444
No 432
>COG1288 Predicted membrane protein [Function unknown]
Probab=21.59 E-value=4.2e+02 Score=23.11 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=13.5
Q ss_pred ccchHHHHHHHHHhh--------hhHHHHHHHH
Q 032830 51 DVPSSPLVGVLQDRV--------NNWRETALIL 75 (132)
Q Consensus 51 ~~~gP~i~G~l~D~~--------g~~r~a~~~~ 75 (132)
...-|.-.|.-++.- + ||...+++
T Consensus 194 St~NPF~~~IAq~iAGip~~sG~~-~Riv~~v~ 225 (481)
T COG1288 194 STMNPFATVIAQNIAGIPFLSGMG-LRIVVWVV 225 (481)
T ss_pred hhcCchHHHHHhhhcCCcccccch-HHHHHHHH
Confidence 444555555444432 4 88887775
No 433
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=21.51 E-value=4.5e+02 Score=21.38 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhc---ccchHHHHHHHHHhh
Q 032830 8 FAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFG---DVPSSPLVGVLQDRV 65 (132)
Q Consensus 8 ~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG---~~~gP~i~G~l~D~~ 65 (132)
+.+++++.+. .+..++.-+..+.|+.-+...++..+.+-++| ...||+++..+.--.
T Consensus 211 F~isa~~AGi-AGaL~a~~~~~v~p~~f~~~~S~~~l~~vvlGG~Gt~~G~v~Ga~l~~~~ 270 (314)
T COG4177 211 FVISAAIAGI-AGALYALYLGFVSPESFSFTLSIEVLAMVVLGGAGTLFGALLGAVLVVLL 270 (314)
T ss_pred HHHHHHHHHH-HHHHHHHHhceeChhhccHHHHHHHHHHHHHcCccccHHHHHHHHHHHHH
Confidence 3344444333 35566666777777777788887777766665 455777766655433
No 434
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.47 E-value=1.5e+02 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=8.9
Q ss_pred HHHHHhhccccccccc
Q 032830 88 IGIFLHSVDKFSEDNE 103 (132)
Q Consensus 88 ~~~~~~~~~~~~~~~e 103 (132)
+..|++|+...+++.|
T Consensus 46 ~~~~l~k~g~l~~~te 61 (125)
T PF03817_consen 46 ARLWLQKKGLLSKPTE 61 (125)
T ss_pred HHHHHHHcCCCChHHH
Confidence 3456666666655444
No 435
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.42 E-value=5.5e+02 Score=23.42 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.1
Q ss_pred hhHHHHHhHhhcCC-CCchHHHHHHHHHHHhhcccchHH
Q 032830 19 QGPVNFICLHCVKP-SIRPLSMAISTVSIHIFGDVPSSP 56 (132)
Q Consensus 19 ~~~~~~ii~~~vp~-~~R~~a~gi~~l~~~llG~~~gP~ 56 (132)
.-|.|.++-.++.. +.+|.+.+++..++.+.-+++.-+
T Consensus 54 ~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 92 (697)
T PF09726_consen 54 LWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLF 92 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 36778777776664 788999888877765554544443
No 436
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=21.37 E-value=2.2e+02 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIH 47 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~ 47 (132)
++.+++...+.+..+++..-+=.+..|.+.|+..+-.+-.-.|
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence 3444555555566666666676777787777776665544333
No 437
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.33 E-value=1.7e+02 Score=22.94 Aligned_cols=12 Identities=25% Similarity=-0.036 Sum_probs=5.2
Q ss_pred cchHHHHHHHHH
Q 032830 52 VPSSPLVGVLQD 63 (132)
Q Consensus 52 ~~gP~i~G~l~D 63 (132)
.++|++.+.++.
T Consensus 35 ~l~~~~v~v~ig 46 (224)
T PF13829_consen 35 FLGPIAVFVLIG 46 (224)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 438
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=21.31 E-value=46 Score=22.35 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q 032830 83 AAIWFIGIFLHS 94 (132)
Q Consensus 83 ~~~~~~~~~~~~ 94 (132)
+++-++.+||.+
T Consensus 81 ~lv~~l~w~f~~ 92 (96)
T PTZ00382 81 GLVGFLCWWFVC 92 (96)
T ss_pred HHHHHHhheeEE
Confidence 333333444443
No 439
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.06 E-value=3.4e+02 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=11.2
Q ss_pred cchHHHHHHHHHhhhhHHHHHHH
Q 032830 52 VPSSPLVGVLQDRVNNWRETALI 74 (132)
Q Consensus 52 ~~gP~i~G~l~D~~g~~r~a~~~ 74 (132)
.++=++..++.|+.+ ..-.+.+
T Consensus 86 L~~l~v~~~La~~L~-~~e~~~~ 107 (150)
T COG3086 86 LVGLFLGAILAQYLF-FSELIVI 107 (150)
T ss_pred HHHHHHHHHHHHHHh-hhhHHHH
Confidence 444555556666665 3333433
No 440
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=20.89 E-value=2.2e+02 Score=21.00 Aligned_cols=31 Identities=6% Similarity=-0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 032830 55 SPLVGVLQDRVNNWRETALILTAILFPAAAIW 86 (132)
Q Consensus 55 P~i~G~l~D~~g~~r~a~~~~~~~~iv~~~~~ 86 (132)
-.+..+-++.+| |-+...+...+.+.+++++
T Consensus 49 ~~~lm~~spy~G-~~s~~~ftv~fv~m~~~ll 79 (155)
T PF10777_consen 49 VAALMYYSPYFG-LGSVWGFTVFFVVMAAFLL 79 (155)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHHHHHH
Confidence 334566777788 7666666544444444433
No 441
>PRK11588 hypothetical protein; Provisional
Probab=20.39 E-value=5.9e+02 Score=22.35 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhhcccchHHHHHHHHHhh--------hhHHHHHHHH
Q 032830 36 PLSMAISTVSIHIFGDVPSSPLVGVLQDRV--------NNWRETALIL 75 (132)
Q Consensus 36 ~~a~gi~~l~~~llG~~~gP~i~G~l~D~~--------g~~r~a~~~~ 75 (132)
+.++.+........+....|.-+|.-.+-. + ||...++.
T Consensus 192 g~ai~~lg~~iGf~~s~~NPftvgIAQ~iAglp~~SG~~-~R~i~~~v 238 (506)
T PRK11588 192 TVLVTYVATQIGFATSWMNPFSVAIAQGIAGVPVLSGSG-LRIVMWVI 238 (506)
T ss_pred HHHHHHHHhhhhhcccccCccHHHHHHHhcCCCccccHH-HHHHHHHH
Confidence 333333333333333445566666433321 3 77766654
No 442
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=20.35 E-value=2.1e+02 Score=18.88 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.5
Q ss_pred cccccc
Q 032830 98 FSEDNE 103 (132)
Q Consensus 98 ~~~~~e 103 (132)
.++++|
T Consensus 75 ~~ks~~ 80 (84)
T PRK13718 75 ERKSDE 80 (84)
T ss_pred cccchh
Confidence 434443
No 443
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=20.15 E-value=5.5e+02 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhccccccccccccc
Q 032830 69 RETALILTAILFPAAAIW-FIGIFLHSVDKFSEDNEDKVS 107 (132)
Q Consensus 69 r~a~~~~~~~~iv~~~~~-~~~~~~~~~~~~~~~~e~~~~ 107 (132)
..++...++.++.++++- .++.|..+|++. ++++++++
T Consensus 159 ~va~A~ATfGlv~GgliGgpva~~li~k~~l-~~~~~~~~ 197 (404)
T COG0786 159 EVAMASATFGLVAGGLIGGPVARWLIKKNKL-KPDPTKDP 197 (404)
T ss_pred HHHHHHHHHHHHHhHhcCcHHHHHHHHhcCC-CCCCCCCc
Confidence 334444444444444433 245555544443 55555554
No 444
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.02 E-value=1.6e+02 Score=27.39 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=7.8
Q ss_pred HhhhhHHHHHHHH
Q 032830 63 DRVNNWRETALIL 75 (132)
Q Consensus 63 D~~g~~r~a~~~~ 75 (132)
|... ++-.|+..
T Consensus 266 Di~~-YHT~fLl~ 277 (807)
T PF10577_consen 266 DITT-YHTVFLLA 277 (807)
T ss_pred Cchh-HHHHHHHH
Confidence 6555 77777654
Done!