Query 032830
Match_columns 132
No_of_seqs 113 out of 1124
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.8 1.6E-08 5.4E-13 79.9 7.7 80 2-82 120-199 (451)
2 1pw4_A Glycerol-3-phosphate tr 98.7 4.9E-08 1.7E-12 77.0 9.5 83 4-87 349-431 (451)
3 4aps_A DI-OR tripeptide H+ sym 98.7 1.2E-07 4.2E-12 76.1 10.6 81 3-85 110-192 (491)
4 3o7q_A L-fucose-proton symport 98.5 8E-07 2.7E-11 69.9 9.3 65 2-67 118-183 (438)
5 2xut_A Proton/peptide symporte 98.4 1.2E-06 3.9E-11 71.1 8.7 78 3-82 111-191 (524)
6 2gfp_A EMRD, multidrug resista 98.3 3.5E-07 1.2E-11 71.0 3.4 75 3-79 90-164 (375)
7 2xut_A Proton/peptide symporte 98.1 1.9E-06 6.4E-11 69.8 4.4 60 5-65 409-468 (524)
8 2cfq_A Lactose permease; trans 98.0 1.5E-06 5.1E-11 69.3 2.4 64 19-84 330-394 (417)
9 4aps_A DI-OR tripeptide H+ sym 98.0 4.6E-06 1.6E-10 66.8 4.5 78 4-84 389-466 (491)
10 3o7q_A L-fucose-proton symport 97.4 0.00019 6.7E-09 56.1 5.9 66 7-75 353-418 (438)
11 4gc0_A D-xylose-proton symport 97.3 0.0008 2.8E-08 53.6 8.4 44 20-64 389-432 (491)
12 2gfp_A EMRD, multidrug resista 97.2 0.00018 6.1E-09 55.5 3.3 69 4-75 294-362 (375)
13 4gc0_A D-xylose-proton symport 96.5 0.00078 2.7E-08 53.7 1.8 71 4-75 129-206 (491)
14 2jln_A MHP1; hydantoin, transp 71.5 40 0.0014 27.5 10.6 19 47-65 364-382 (501)
15 2cfq_A Lactose permease; trans 67.0 30 0.001 26.6 8.3 33 38-72 260-292 (417)
16 3d9s_A Aquaporin-5, AQP-5; aqu 57.6 25 0.00086 26.7 6.1 10 68-77 203-212 (266)
17 3iyz_A Aquaporin-4; water tran 48.3 20 0.00069 28.5 4.3 20 68-87 246-266 (340)
18 2b6o_A Aquaporin-0, lens fiber 44.9 33 0.0011 25.9 4.9 9 68-76 200-208 (263)
19 3hd6_A Ammonium transporter RH 42.4 61 0.0021 27.0 6.4 26 100-125 431-458 (490)
20 3b9w_A Ammonium transporter fa 39.5 55 0.0019 26.5 5.7 12 51-62 304-315 (407)
21 2a65_A Leutaa, Na(+):neurotran 33.8 57 0.0019 27.2 5.0 28 22-50 363-390 (519)
22 2zz9_A Aquaporin-4; water tran 29.8 34 0.0012 26.5 2.8 10 68-77 207-216 (301)
23 2kv5_A FST, putative uncharact 24.6 43 0.0015 17.6 1.7 11 52-62 8-18 (33)
24 4f35_D Transporter, NADC famil 22.6 1.1E+02 0.0036 24.3 4.6 7 69-75 203-209 (449)
25 2i68_A Protein EMRE; transmemb 21.5 1.2E+02 0.0042 20.4 4.2 19 100-118 112-130 (137)
26 3rvy_A ION transport protein; 21.3 1.4E+02 0.0047 22.0 4.7 13 34-46 178-190 (285)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.77 E-value=1.6e-08 Score=79.86 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFP 81 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv 81 (132)
+.+++..++.+++.+...+...+.+.+++|+++|++++++.....+ +|..+||.+.|++.+.+|+||+.|++.++..++
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN-VGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 198 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH-HHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456667777888888888899999999999999999999998875 788999999999998876699999887654444
Q ss_pred H
Q 032830 82 A 82 (132)
Q Consensus 82 ~ 82 (132)
.
T Consensus 199 ~ 199 (451)
T 1pw4_A 199 V 199 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.74 E-value=4.9e-08 Score=77.00 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
.++++++.+++.....+..+..+++.+|+++|++++|+++...+++|..++|.+.|++.|++| |++.|.+..+..+++.
T Consensus 349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence 344555566666666667778999999999999999999998764388999999999999999 9999988776666555
Q ss_pred HHHH
Q 032830 84 AIWF 87 (132)
Q Consensus 84 ~~~~ 87 (132)
+++.
T Consensus 428 ~~~~ 431 (451)
T 1pw4_A 428 ILLI 431 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.69 E-value=1.2e-07 Score=76.09 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCC--chHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSI--RPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILF 80 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~--R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~i 80 (132)
.+++..++.+++.+...+.....+.+++|+++ |+.+.+++....+ +|..+||.+.|++.|+.| ||+.|++..+..+
T Consensus 110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~ 187 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN-LGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH-HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Confidence 45556667777777777888899999999999 7778887888765 788999999999999999 9999998765555
Q ss_pred HHHHH
Q 032830 81 PAAAI 85 (132)
Q Consensus 81 v~~~~ 85 (132)
++.++
T Consensus 188 ~~~~~ 192 (491)
T 4aps_A 188 IGLLV 192 (491)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.46 E-value=8e-07 Score=69.90 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHH-Hhhhh
Q 032830 2 YAFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQ-DRVNN 67 (132)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~-D~~g~ 67 (132)
+.+++..++.+++.+...++....+.+++|+++|+.++++.....+ +|..+||.+.|++. +..++
T Consensus 118 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS-FGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH-HHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccc
Confidence 3455666777777788888889999999999999999999999875 78899999999999 55544
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.38 E-value=1.2e-06 Score=71.06 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHH---HHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAI---STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi---~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
.+++..++.+++.+...+...+.+.+++|+++|+++.++ +....+ +|..+||.+.|++.|+.| |++.|.+.++..
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~ 188 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN-FGSFFASLSMPLLLKNFG-AAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH-HHHHHHHHTSTHHHHTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 345556667777778888889999999999999877776 776655 678999999999999989 999998876544
Q ss_pred HHH
Q 032830 80 FPA 82 (132)
Q Consensus 80 iv~ 82 (132)
+++
T Consensus 189 ~~~ 191 (524)
T 2xut_A 189 FVA 191 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.29 E-value=3.5e-07 Score=71.00 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032830 3 AFLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAIL 79 (132)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~ 79 (132)
.+++..++.+++.....+.....+.+.+|+++|++++++...... +|...||.+.|++.|++| ||+.+.+.++..
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 164 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL-VSPLLAPLIGGLLDTMWN-WRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH-HHHHHHHHHHHHSSCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 344455566666677777888899999999999999999998875 688999999999999989 999998765443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=1.9e-06 Score=69.84 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhh
Q 032830 5 LALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~ 65 (132)
++..++.+++.....++.+..+.+.+|+++|++++|++++..+ +|..+||.+.|++.|..
T Consensus 409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT-VGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH-HHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Confidence 3344555555555667777889999999999999999998865 68899999999998854
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.05 E-value=1.5e-06 Score=69.30 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=49.9
Q ss_pred hhHHHHHhHhhcCCCCchHHHHHH-HHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 032830 19 QGPVNFICLHCVKPSIRPLSMAIS-TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA 84 (132)
Q Consensus 19 ~~~~~~ii~~~vp~~~R~~a~gi~-~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~~ 84 (132)
.++.+..+.+..|++.|+++.++. +... .+|..+||++.|++.|++| ++..|.+.++..+++.+
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFK-QLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTH-HHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-hHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHH
Confidence 345567888999999999999984 5554 4677899999999999988 88888877655555443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.00 E-value=4.6e-06 Score=66.82 Aligned_cols=78 Identities=9% Similarity=-0.048 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA 83 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~~~~~iv~~ 83 (132)
.++.+++.++......++.+..+.+.+|+++|++++|++++..+ +|..++|.+.|++.|. + +.+.+.+.+...++++
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS-VGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLG 465 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH-HHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHH
Confidence 34455566666667678888999999999999999999988865 6889999999988775 4 5555655544444443
Q ss_pred H
Q 032830 84 A 84 (132)
Q Consensus 84 ~ 84 (132)
+
T Consensus 466 ~ 466 (491)
T 4aps_A 466 I 466 (491)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.45 E-value=0.00019 Score=56.11 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 7 LFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
.+.+.+++.....+..+....+.+|++ ++.+.++.. . +.+|..++|.+.|++.|++|++++.|.+.
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M-TIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-H-TTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-H-HHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344555666666677778878999976 899998876 3 35788999999999999998788888764
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.34 E-value=0.0008 Score=53.56 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=34.3
Q ss_pred hHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHh
Q 032830 20 GPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDR 64 (132)
Q Consensus 20 ~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~ 64 (132)
+..+....+++|.+.|++++|+.....+ +|..++|.++..+.+.
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~-~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQW-LANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHH-HHHHHHHTHHHHHCHH
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3456788899999999999999988866 4557777777766553
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.23 E-value=0.00018 Score=55.52 Aligned_cols=69 Identities=10% Similarity=-0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~~~~ 75 (132)
+++..++.+++.....+.....+++.+| ++|+++.|+.+...+ +|..++|.+.|++.|..+ ++..+.+.
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~~-~~~~~~~~ 362 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN-IGSGVLASLSAMLPQTGQ-GSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH-HHHHCCSTTCTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH-HHHHHHHHHHHHHhcCCc-ccHHHHHH
Confidence 3344556666666777888888999998 899999999998865 677999999999998877 88777764
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.54 E-value=0.00078 Score=53.66 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHhHhhcCCCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhh-------hHHHHHHHH
Q 032830 4 FLALFAVGELLVFATQGPVNFICLHCVKPSIRPLSMAISTVSIHIFGDVPSSPLVGVLQDRVN-------NWRETALIL 75 (132)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~ii~~~vp~~~R~~a~gi~~l~~~llG~~~gP~i~G~l~D~~g-------~~r~a~~~~ 75 (132)
+++.=++.++..+...+.....+.++.|+++|++..++...... +|...++.+...+.+..+ .||+.+...
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAII-FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhh-hhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence 34444566666667777788899999999999999999988764 676777777666665421 266666543
No 14
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=71.54 E-value=40 Score=27.51 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=15.5
Q ss_pred HhhcccchHHHHHHHHHhh
Q 032830 47 HIFGDVPSSPLVGVLQDRV 65 (132)
Q Consensus 47 ~llG~~~gP~i~G~l~D~~ 65 (132)
..+|..++|+.+-.+.|++
T Consensus 364 ~~lg~~l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 364 NLLASALGPLAGIMISDYF 382 (501)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999986
No 15
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=66.98 E-value=30 Score=26.61 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHH
Q 032830 38 SMAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETA 72 (132)
Q Consensus 38 a~gi~~l~~~llG~~~gP~i~G~l~D~~g~~r~a~ 72 (132)
..++..... .++..++.++.|+++|++| -|..+
T Consensus 260 ~~g~~~~~~-~~~~~~~~~~~g~l~dr~g-~~~~l 292 (417)
T 2cfq_A 260 VFGYVTTMG-ELLNASIMFFAPLIINRIG-GKNAL 292 (417)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHC-HHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhc-HHHHH
Confidence 334444433 3445677888999999998 44443
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=57.63 E-value=25 Score=26.69 Aligned_cols=10 Identities=0% Similarity=-0.406 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q 032830 68 WRETALILTA 77 (132)
Q Consensus 68 ~r~a~~~~~~ 77 (132)
|.|.+++.++
T Consensus 203 ~~Wvy~vgP~ 212 (266)
T 3d9s_A 203 AHWVFWVGPI 212 (266)
T ss_dssp THHHHHHHHH
T ss_pred CEeeeehHHH
Confidence 4777777653
No 17
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=48.30 E-value=20 Score=28.47 Aligned_cols=20 Identities=15% Similarity=-0.115 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHH
Q 032830 68 WRETALILTAIL-FPAAAIWF 87 (132)
Q Consensus 68 ~r~a~~~~~~~~-iv~~~~~~ 87 (132)
+.|.+++.+++. +++++++.
T Consensus 246 ~~WVywvgPiiGailaallY~ 266 (340)
T 3iyz_A 246 NHWIYWVGPIIGAVLAGALYE 266 (340)
T ss_pred cEeehhHHHHHHHHHHHHHHH
Confidence 456677665433 44444443
No 18
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=44.94 E-value=33 Score=25.91 Aligned_cols=9 Identities=0% Similarity=-0.418 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q 032830 68 WRETALILT 76 (132)
Q Consensus 68 ~r~a~~~~~ 76 (132)
+.|.+++.+
T Consensus 200 ~~Wvy~vgP 208 (263)
T 2b6o_A 200 NHWVYWVGP 208 (263)
T ss_dssp TCTHHHHHH
T ss_pred ceeHHHHHH
Confidence 456666654
No 19
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=42.38 E-value=61 Score=27.00 Aligned_cols=26 Identities=8% Similarity=-0.059 Sum_probs=7.1
Q ss_pred ccccccccc--ccCCCCccccccccchh
Q 032830 100 EDNEDKVSR--IERSKTTPLLEDEKAET 125 (132)
Q Consensus 100 ~~~e~~~~~--~~~~~~~~~~~~~~~~~ 125 (132)
+|+|.++.. +-.+.|+++..++..|+
T Consensus 431 ~e~e~~g~d~we~p~~~~~~~~~~~~~~ 458 (490)
T 3hd6_A 431 DENCFEDAVYWEMPEGNSTVYIPEDPTF 458 (490)
T ss_dssp TTSTTCGGGTSCCCTTTC----------
T ss_pred HHHHhCCCceeecCcccccccCCCCccc
Confidence 444444443 23444556665655553
No 20
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=39.50 E-value=55 Score=26.53 Aligned_cols=12 Identities=0% Similarity=-0.186 Sum_probs=5.5
Q ss_pred ccchHHHHHHHH
Q 032830 51 DVPSSPLVGVLQ 62 (132)
Q Consensus 51 ~~~gP~i~G~l~ 62 (132)
++.|.+..|...
T Consensus 304 Gi~G~l~~glfa 315 (407)
T 3b9w_A 304 GLLGGFSAILIV 315 (407)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHc
Confidence 344555544443
No 21
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=33.78 E-value=57 Score=27.17 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=14.9
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhhc
Q 032830 22 VNFICLHCVKPSIRPLSMAISTVSIHIFG 50 (132)
Q Consensus 22 ~~~ii~~~vp~~~R~~a~gi~~l~~~llG 50 (132)
..+.++|-.+-+ |-.++.+.....-++|
T Consensus 363 ~vt~l~D~~~~~-R~~~~~~v~~~~fllg 390 (519)
T 2a65_A 363 MIAFLEDELKLS-RKHAVLWTAAIVFFSA 390 (519)
T ss_dssp HHHHHHHTSCCC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 445667777643 5555554444433444
No 22
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=29.85 E-value=34 Score=26.55 Aligned_cols=10 Identities=0% Similarity=-0.422 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 032830 68 WRETALILTA 77 (132)
Q Consensus 68 ~r~a~~~~~~ 77 (132)
..|.+++.++
T Consensus 207 ~~WVy~vgPi 216 (301)
T 2zz9_A 207 NHWIYWVGPI 216 (301)
T ss_dssp TTTHHHHHHH
T ss_pred ceeeeeeHHH
Confidence 4566666543
No 23
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=24.65 E-value=43 Score=17.58 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=5.6
Q ss_pred cchHHHHHHHH
Q 032830 52 VPSSPLVGVLQ 62 (132)
Q Consensus 52 ~~gP~i~G~l~ 62 (132)
+++|+++|.+.
T Consensus 8 IIaPivVGvvl 18 (33)
T 2kv5_A 8 VIAPIFVGLVL 18 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 24
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=22.61 E-value=1.1e+02 Score=24.28 Aligned_cols=7 Identities=14% Similarity=-0.192 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032830 69 RETALIL 75 (132)
Q Consensus 69 r~a~~~~ 75 (132)
.|.....
T Consensus 203 ~~~~~~~ 209 (449)
T 4f35_D 203 DWMKFGL 209 (449)
T ss_dssp HHHHHHH
T ss_pred HhhhhcC
Confidence 3444333
No 25
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=21.49 E-value=1.2e+02 Score=20.41 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=0.0
Q ss_pred cccccccccccCCCCcccc
Q 032830 100 EDNEDKVSRIERSKTTPLL 118 (132)
Q Consensus 100 ~~~e~~~~~~~~~~~~~~~ 118 (132)
.+.+.+...++||.-..-+
T Consensus 112 ~~~~v~~~~~~~~~~~~~~ 130 (137)
T 2i68_A 112 FEAYVEQKLISEEDLNSAV 130 (137)
T ss_dssp -------------------
T ss_pred cccchhhhhcCHHHhhhhh
Confidence 3344444445655544433
No 26
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.27 E-value=1.4e+02 Score=21.97 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=6.8
Q ss_pred CchHHHHHHHHHH
Q 032830 34 IRPLSMAISTVSI 46 (132)
Q Consensus 34 ~R~~a~gi~~l~~ 46 (132)
-.+...+++.+..
T Consensus 178 F~s~~~a~~~~~~ 190 (285)
T 3rvy_A 178 FGTLGESFYTLFQ 190 (285)
T ss_dssp HSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3445556665443
Done!