Query 032832
Match_columns 132
No_of_seqs 139 out of 878
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_5 50S ribosomal protein L 99.9 1.4E-24 4.7E-29 144.3 1.6 52 78-130 1-53 (60)
2 2zjr_Z 50S ribosomal protein L 99.9 1.2E-23 3.9E-28 139.8 2.9 52 78-130 1-53 (60)
3 3r8s_0 50S ribosomal protein L 99.8 1.3E-21 4.3E-26 128.3 2.2 49 82-130 1-49 (56)
4 3bbo_2 Ribosomal protein L32; 98.1 4.2E-07 1.4E-11 59.9 0.9 24 81-104 1-24 (57)
5 2apo_B Ribosome biogenesis pro 76.5 1.1 3.9E-05 29.2 1.6 20 107-127 5-24 (60)
6 2gvi_A Conserved hypothetical 74.1 0.56 1.9E-05 36.2 -0.4 23 108-130 172-202 (204)
7 2aus_D NOP10, ribosome biogene 73.9 1.5 5E-05 28.7 1.7 20 107-127 4-23 (60)
8 3j20_Y 30S ribosomal protein S 71.3 2.3 7.9E-05 26.3 2.1 22 106-127 17-43 (50)
9 3irb_A Uncharacterized protein 70.3 1.9 6.4E-05 31.6 1.7 23 107-129 46-69 (145)
10 2gnr_A Conserved hypothetical 70.2 1.9 6.5E-05 31.8 1.7 23 107-129 46-69 (145)
11 3d00_A Tungsten formylmethanof 58.3 1.8 6.2E-05 33.2 -0.3 23 107-129 162-186 (191)
12 1gnf_A Transcription factor GA 55.7 1.8 6.2E-05 26.6 -0.6 23 110-132 6-38 (46)
13 3qt1_I DNA-directed RNA polyme 53.4 6 0.00021 28.9 1.8 23 105-127 21-52 (133)
14 1pft_A TFIIB, PFTFIIBN; N-term 52.6 5.4 0.00019 23.8 1.2 21 107-127 4-30 (50)
15 1wii_A Hypothetical UPF0222 pr 51.4 11 0.00038 25.7 2.8 14 104-117 19-32 (85)
16 2lcq_A Putative toxin VAPC6; P 45.4 7.6 0.00026 28.1 1.3 19 109-127 133-154 (165)
17 2cr8_A MDM4 protein; ZF-ranbp 43.1 12 0.00041 23.9 1.8 24 106-129 9-33 (53)
18 4esj_A Type-2 restriction enzy 42.4 8.1 0.00028 31.7 1.1 19 109-127 35-62 (257)
19 2kdx_A HYPA, hydrogenase/ureas 39.6 8.9 0.0003 26.7 0.8 25 103-127 68-96 (119)
20 2k4x_A 30S ribosomal protein S 36.3 19 0.00064 22.5 1.9 20 108-127 18-42 (55)
21 3pwf_A Rubrerythrin; non heme 34.7 16 0.00054 27.3 1.6 23 106-128 136-160 (170)
22 1h7b_A Anaerobic ribonucleotid 34.4 11 0.00039 33.6 0.8 23 105-127 537-564 (605)
23 2xzm_5 Ribosomal protein S26E 34.2 36 0.0012 24.9 3.4 31 84-120 2-32 (119)
24 3a43_A HYPD, hydrogenase nicke 33.4 19 0.00066 26.0 1.8 14 104-117 66-79 (139)
25 1lko_A Rubrerythrin all-iron(I 32.9 19 0.00065 27.0 1.8 20 108-128 155-178 (191)
26 2zkr_2 60S ribosomal protein L 31.3 21 0.00072 25.3 1.7 20 108-127 16-37 (97)
27 3na7_A HP0958; flagellar bioge 28.4 21 0.00071 27.8 1.3 14 106-119 220-233 (256)
28 2f9y_B Acetyl-coenzyme A carbo 27.2 24 0.00083 28.6 1.6 20 108-127 24-49 (304)
29 2con_A RUH-035 protein, NIN on 27.2 20 0.00067 24.3 0.9 25 101-125 23-47 (79)
30 1l8d_A DNA double-strand break 26.7 22 0.00074 24.0 1.0 13 108-120 47-59 (112)
31 3u5c_a 40S ribosomal protein S 25.6 61 0.0021 23.6 3.3 30 84-119 2-31 (119)
32 1vk6_A NADH pyrophosphatase; 1 25.3 26 0.0009 27.5 1.4 20 108-127 107-131 (269)
33 1dl6_A Transcription factor II 25.2 40 0.0014 20.9 2.0 8 109-116 12-19 (58)
34 2c6a_A Ubiquitin-protein ligas 23.9 34 0.0012 21.2 1.4 23 107-129 12-35 (46)
35 2f49_C STE5 peptide, mitogen-a 23.6 37 0.0013 19.3 1.4 13 75-87 16-28 (30)
36 1vq8_Z 50S ribosomal protein L 22.5 30 0.001 23.4 1.1 20 108-127 27-51 (83)
37 6rxn_A Rubredoxin; electron tr 21.8 28 0.00094 21.2 0.7 14 106-119 28-41 (46)
38 2xzm_9 RPS31E; ribosome, trans 21.5 1.2E+02 0.0041 23.2 4.5 19 109-127 114-137 (189)
39 2hf1_A Tetraacyldisaccharide-1 21.1 23 0.00078 23.1 0.3 11 107-117 7-17 (68)
40 2f9i_B Acetyl-coenzyme A carbo 21.0 29 0.00099 27.9 0.9 20 108-127 30-55 (285)
41 2jr6_A UPF0434 protein NMA0874 20.8 24 0.00082 23.0 0.3 12 107-118 7-18 (68)
42 3t7l_A Zinc finger FYVE domain 20.5 14 0.00048 24.7 -0.9 22 108-129 44-72 (90)
43 2akl_A PHNA-like protein PA012 20.4 35 0.0012 25.6 1.2 22 106-127 25-50 (138)
44 3u6p_A Formamidopyrimidine-DNA 20.3 35 0.0012 27.1 1.2 20 109-128 246-272 (273)
45 3k7a_M Transcription initiatio 20.1 40 0.0014 27.3 1.6 20 108-127 21-48 (345)
No 1
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=99.89 E-value=1.4e-24 Score=144.34 Aligned_cols=52 Identities=37% Similarity=0.588 Sum_probs=48.0
Q ss_pred ceeeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832 78 MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK 130 (132)
Q Consensus 78 ~~lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k 130 (132)
|+||||||+|+|++|+++||+|++++ .++|+.||+|||++++|+||++| ||+
T Consensus 1 m~~MAVPKrK~Sksr~~~RRsh~kl~-~p~l~~c~~cGe~~~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 1 MAKHPVPKKKTSKARRDARRSHHALT-PPTLVPCPECKAMKPPHTVCPECGYYA 53 (60)
T ss_dssp -CCCCCCSSCCCHHHHHHHGGGCCCC-CCCCEECTTTCCEECTTSCCTTTCEET
T ss_pred CcccccCcCcCChhhcchhhcccccc-CCceeECCCCCCeecceEEcCCCCcCC
Confidence 57999999999999999999999987 79999999999999999999995 664
No 2
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=99.88 E-value=1.2e-23 Score=139.81 Aligned_cols=52 Identities=37% Similarity=0.599 Sum_probs=47.4
Q ss_pred ceeeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832 78 MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK 130 (132)
Q Consensus 78 ~~lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k 130 (132)
|.+|||||+|+|++|+++||+|+++. +++|+.||+||+++++|+||++| ||+
T Consensus 1 ~~lMAVPKrK~Sksrr~~RRsh~kl~-~p~l~~c~~cG~~~~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 1 MAKHPVPKKKTSKSKRDMRRSHHALT-APNLTECPQCHGKKLSHHICPNCGYYD 53 (60)
T ss_dssp -CCCSCCSSCCCTTHHHHHTTTCCCC-CCCCEECTTTCCEECTTBCCTTTCBSS
T ss_pred CcccccCCCCCChHHhhhhccccccc-CCCceECCCCCCEeCCceEcCCCCcCC
Confidence 46899999999999999999999886 79999999999999999999995 554
No 3
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=99.82 E-value=1.3e-21 Score=128.33 Aligned_cols=49 Identities=33% Similarity=0.470 Sum_probs=46.3
Q ss_pred eCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCCccc
Q 032832 82 AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERK 130 (132)
Q Consensus 82 AVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~gy~k 130 (132)
||||+|+|++|+++||+||+++..++|+.||+|||++++|+||++|||+
T Consensus 1 AVPKrK~Sksrr~~RRsh~kl~~~p~l~~c~~cGe~~l~H~vc~~G~Y~ 49 (56)
T 3r8s_0 1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYR 49 (56)
T ss_dssp CCCSSCCCHHHHHHHGGGCCCCCCCCEEECTTTCCEEETTBCCTTSEET
T ss_pred CCCCCcCChhhhhhhhchhhcccCCceeECCCCCCeecccEECCCCeEC
Confidence 8999999999999999999998449999999999999999999999875
No 4
>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.15 E-value=4.2e-07 Score=59.89 Aligned_cols=24 Identities=46% Similarity=0.448 Sum_probs=21.7
Q ss_pred eeCCCCCCCccccCCCCCCCCCCC
Q 032832 81 MAVPKKKVSRHKRGIRNGPKALKP 104 (132)
Q Consensus 81 MAVPKrK~SksRkr~RRsh~~lk~ 104 (132)
|||||+|+|+++++.|++.|..+.
T Consensus 1 MAVPKKrtSkskk~~Rk~~WK~ka 24 (57)
T 3bbo_2 1 MAVPKKRTSIYKKRIRKNIWKKKG 24 (57)
T ss_dssp CCCCSSCCCTTHHHHTTSTTCCCT
T ss_pred CCCCCCccchhHHHHHHHHHHHHH
Confidence 999999999999999999886653
No 5
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=76.46 E-value=1.1 Score=29.19 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=15.4
Q ss_pred CeeecCCCCceecCceeCCCC
Q 032832 107 VIVRCKSCGRVKLPHFFCCSG 127 (132)
Q Consensus 107 ~L~~Cp~CGe~klpH~vC~~g 127 (132)
.+..|++||.+.+ -.+|+.|
T Consensus 5 ~mr~C~~CgvYTL-k~~CP~C 24 (60)
T 2apo_B 5 RMKKCPKCGLYTL-KEICPKC 24 (60)
T ss_dssp CCEECTTTCCEES-SSBCSSS
T ss_pred hceeCCCCCCEec-cccCcCC
Confidence 4678999999988 4458875
No 6
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=74.13 E-value=0.56 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=19.3
Q ss_pred eeecCCCCceecCce--------eCCCCccc
Q 032832 108 IVRCKSCGRVKLPHF--------FCCSGERK 130 (132)
Q Consensus 108 L~~Cp~CGe~klpH~--------vC~~gy~k 130 (132)
.+.|+.|||....++ +|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 679999999998874 88888754
No 7
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=73.91 E-value=1.5 Score=28.71 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=15.5
Q ss_pred CeeecCCCCceecCceeCCCC
Q 032832 107 VIVRCKSCGRVKLPHFFCCSG 127 (132)
Q Consensus 107 ~L~~Cp~CGe~klpH~vC~~g 127 (132)
.+..|++||.+.+ --+|+.|
T Consensus 4 ~mr~C~~Cg~YTL-k~~CP~C 23 (60)
T 2aus_D 4 RIRKCPKCGRYTL-KETCPVC 23 (60)
T ss_dssp CCEECTTTCCEES-SSBCTTT
T ss_pred cceECCCCCCEEc-cccCcCC
Confidence 4678999999988 5668854
No 8
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.28 E-value=2.3 Score=26.34 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCeeecCCCCc--eecCc---eeCCCC
Q 032832 106 PVIVRCKSCGR--VKLPH---FFCCSG 127 (132)
Q Consensus 106 ~~L~~Cp~CGe--~klpH---~vC~~g 127 (132)
.....||+||. ...+| ..|+.|
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kC 43 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKC 43 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSS
T ss_pred EecccCCCCCCceEEecCCCeEECCCC
Confidence 45668999998 44444 689886
No 9
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=70.35 E-value=1.9 Score=31.57 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=18.2
Q ss_pred CeeecCCCCce-ecCceeCCCCcc
Q 032832 107 VIVRCKSCGRV-KLPHFFCCSGER 129 (132)
Q Consensus 107 ~L~~Cp~CGe~-klpH~vC~~gy~ 129 (132)
-+..|+.||+. ..|..+|+.|..
T Consensus 46 ~~~rC~~CG~~~~PPr~~Cp~C~s 69 (145)
T 3irb_A 46 IGSKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp EEEECTTTCCEEESCCSEETTTTE
T ss_pred EEEEeCCCCcEEcCchhhCcCCCC
Confidence 36789999998 556889999843
No 10
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=70.21 E-value=1.9 Score=31.77 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=18.4
Q ss_pred CeeecCCCCce-ecCceeCCCCcc
Q 032832 107 VIVRCKSCGRV-KLPHFFCCSGER 129 (132)
Q Consensus 107 ~L~~Cp~CGe~-klpH~vC~~gy~ 129 (132)
-+..|..||+. ..|..+|+.|..
T Consensus 46 ~~~rC~~CG~~~fPPr~~Cp~C~s 69 (145)
T 2gnr_A 46 IGSKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp EEEECTTTCCEEESCCSEETTTTE
T ss_pred EEEEECCCCcEEeCCCCCCCCCCC
Confidence 36789999998 557889999853
No 11
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=58.29 E-value=1.8 Score=33.22 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=18.0
Q ss_pred CeeecCCCCceecCc--eeCCCCcc
Q 032832 107 VIVRCKSCGRVKLPH--FFCCSGER 129 (132)
Q Consensus 107 ~L~~Cp~CGe~klpH--~vC~~gy~ 129 (132)
..+.|+.|||....+ .+|..|+.
T Consensus 162 ~~~~C~~CGE~~~~~g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQDGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGGGCSSCHHHHT
T ss_pred CCEECCcCCCChhhCCCcCCccccC
Confidence 567999999998876 67766654
No 12
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=55.75 E-value=1.8 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.819 Sum_probs=12.3
Q ss_pred ecCCCCceecC--------ceeCCCC--cccCC
Q 032832 110 RCKSCGRVKLP--------HFFCCSG--ERKNH 132 (132)
Q Consensus 110 ~Cp~CGe~klp--------H~vC~~g--y~k~~ 132 (132)
.|.+||...-+ +.+|..| |+++|
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 45555555443 4666665 55443
No 13
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=53.45 E-value=6 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=16.7
Q ss_pred CCCeeecCCCCceecCc---------eeCCCC
Q 032832 105 VPVIVRCKSCGRVKLPH---------FFCCSG 127 (132)
Q Consensus 105 ~~~L~~Cp~CGe~klpH---------~vC~~g 127 (132)
...+..||+||.+..+- .+|..|
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtC 52 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTC 52 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSS
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCC
Confidence 35577899999987554 677776
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.61 E-value=5.4 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=12.5
Q ss_pred CeeecCCCCc-e-e----cCceeCCCC
Q 032832 107 VIVRCKSCGR-V-K----LPHFFCCSG 127 (132)
Q Consensus 107 ~L~~Cp~CGe-~-k----lpH~vC~~g 127 (132)
.+..||+||. . . ..-.+|..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSS
T ss_pred ccEeCcCCCCcceEEcCCCCeEECccc
Confidence 4557888876 2 1 233677765
No 15
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=51.36 E-value=11 Score=25.74 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=11.6
Q ss_pred CCCCeeecCCCCce
Q 032832 104 PVPVIVRCKSCGRV 117 (132)
Q Consensus 104 ~~~~L~~Cp~CGe~ 117 (132)
..+..-.||-||+.
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 36788899999987
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=45.38 E-value=7.6 Score=28.12 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=13.0
Q ss_pred eecCCCCceec---CceeCCCC
Q 032832 109 VRCKSCGRVKL---PHFFCCSG 127 (132)
Q Consensus 109 ~~Cp~CGe~kl---pH~vC~~g 127 (132)
-.|..||+..- +...||.|
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~C 154 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDC 154 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTT
T ss_pred EECCCCCCcccCCCCCCcCCCC
Confidence 47888887643 35678876
No 17
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=43.11 E-value=12 Score=23.94 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=19.4
Q ss_pred CCeeecCCCCceecC-ceeCCCCcc
Q 032832 106 PVIVRCKSCGRVKLP-HFFCCSGER 129 (132)
Q Consensus 106 ~~L~~Cp~CGe~klp-H~vC~~gy~ 129 (132)
...=+|.+|++.--| ++.|..||.
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCC
T ss_pred cceeecccccccCCCccchhHHHHH
Confidence 345689999999766 999999964
No 18
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=42.43 E-value=8.1 Score=31.66 Aligned_cols=19 Identities=37% Similarity=0.934 Sum_probs=15.4
Q ss_pred eecCCCCceecCc---------eeCCCC
Q 032832 109 VRCKSCGRVKLPH---------FFCCSG 127 (132)
Q Consensus 109 ~~Cp~CGe~klpH---------~vC~~g 127 (132)
..||+||...+.| +.|+.|
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C 62 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHC 62 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTT
T ss_pred CcCCCCCChhhhhccCCCcccccccCCc
Confidence 4799999987644 789988
No 19
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.57 E-value=8.9 Score=26.69 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=15.9
Q ss_pred CCCCCeeecCCCCcee---cCce-eCCCC
Q 032832 103 KPVPVIVRCKSCGRVK---LPHF-FCCSG 127 (132)
Q Consensus 103 k~~~~L~~Cp~CGe~k---lpH~-vC~~g 127 (132)
...+....|.+||+.. .+.. .||.|
T Consensus 68 ~~~p~~~~C~~CG~~~e~~~~~~~~CP~C 96 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKPNALDYGVCEKC 96 (119)
T ss_dssp EEECCEEECSSSSCEECSCCSTTCCCSSS
T ss_pred EeccceEEcCCCCCEEeCCCCCCCcCccc
Confidence 3456677788888763 3445 67776
No 20
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=36.33 E-value=19 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=14.1
Q ss_pred eeecCCCCceec--Cc---eeCCCC
Q 032832 108 IVRCKSCGRVKL--PH---FFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~kl--pH---~vC~~g 127 (132)
...||.||.... +| ..|+.|
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kC 42 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRC 42 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTT
T ss_pred cccCcCCCCceeEeccCCEEECCCC
Confidence 457999998433 44 688886
No 21
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.69 E-value=16 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=14.5
Q ss_pred CCeeecCCCCceecCc--eeCCCCc
Q 032832 106 PVIVRCKSCGRVKLPH--FFCCSGE 128 (132)
Q Consensus 106 ~~L~~Cp~CGe~klpH--~vC~~gy 128 (132)
...-.|+.||.....- -+||.|-
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg 160 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCG 160 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTC
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCC
Confidence 3456688888864322 2788873
No 22
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=34.39 E-value=11 Score=33.59 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCCeeecCCCCceec-----CceeCCCC
Q 032832 105 VPVIVRCKSCGRVKL-----PHFFCCSG 127 (132)
Q Consensus 105 ~~~L~~Cp~CGe~kl-----pH~vC~~g 127 (132)
.+.+..|+.||..-. .|..||.|
T Consensus 537 n~~~~~C~~CGy~~~~~~~~~~~~CP~C 564 (605)
T 1h7b_A 537 NMPVDKCFTCGSTHEMTPTENGFVCSIC 564 (605)
T ss_dssp ECCEEET---------------------
T ss_pred CCCCccCcccCCcCccCccccCCcCCCC
Confidence 488999999996532 37899998
No 23
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=34.23 E-value=36 Score=24.90 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=19.3
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecC
Q 032832 84 PKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLP 120 (132)
Q Consensus 84 PKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klp 120 (132)
||+|.+..|..+-|+| ...+.|.+||.....
T Consensus 2 ~kKRrN~GR~KkgrGh------v~~V~C~nCgr~vPK 32 (119)
T 2xzm_5 2 PVKRRNAGRSQKNRGH------TRTVPCTNCGRQVAK 32 (119)
T ss_dssp CCCCSSTTCCCCSSSC------CCEEECTTTCCEEET
T ss_pred CcccccCCCCCCCCCC------CccEeeCCccccCcc
Confidence 5666555444443444 456789999987543
No 24
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.43 E-value=19 Score=25.96 Aligned_cols=14 Identities=14% Similarity=0.629 Sum_probs=9.8
Q ss_pred CCCCeeecCCCCce
Q 032832 104 PVPVIVRCKSCGRV 117 (132)
Q Consensus 104 ~~~~L~~Cp~CGe~ 117 (132)
..+....|.+||..
T Consensus 66 ~~p~~~~C~~CG~~ 79 (139)
T 3a43_A 66 EEEAVFKCRNCNYE 79 (139)
T ss_dssp EECCEEEETTTCCE
T ss_pred ecCCcEECCCCCCE
Confidence 34667778888776
No 25
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=32.93 E-value=19 Score=27.03 Aligned_cols=20 Identities=35% Similarity=0.861 Sum_probs=14.4
Q ss_pred eeecCCCCcee----cCceeCCCCc
Q 032832 108 IVRCKSCGRVK----LPHFFCCSGE 128 (132)
Q Consensus 108 L~~Cp~CGe~k----lpH~vC~~gy 128 (132)
.-.|+.||... .|- +||.|-
T Consensus 155 ~~~C~~CG~~~~g~~~p~-~CP~C~ 178 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPE-LCPACA 178 (191)
T ss_dssp EEEETTTCCEEEEEECCS-BCTTTC
T ss_pred eEEECCCCCEeeCCCCCC-CCCCCc
Confidence 56799999874 344 888873
No 26
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=31.31 E-value=21 Score=25.27 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=15.3
Q ss_pred eeecCCCCc--eecCceeCCCC
Q 032832 108 IVRCKSCGR--VKLPHFFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe--~klpH~vC~~g 127 (132)
-..|+.||. +++....|..|
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkC 37 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKC 37 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTT
T ss_pred CCcCCCCCCccCcCccccCccc
Confidence 347899988 67777888875
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.36 E-value=21 Score=27.75 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=11.2
Q ss_pred CCeeecCCCCceec
Q 032832 106 PVIVRCKSCGRVKL 119 (132)
Q Consensus 106 ~~L~~Cp~CGe~kl 119 (132)
..++.||+||....
T Consensus 220 ~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 220 GDMITCPYCGRILY 233 (256)
T ss_dssp SSCEECTTTCCEEE
T ss_pred CCEEECCCCCeeEE
Confidence 45789999998743
No 28
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=27.21 E-value=24 Score=28.56 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=14.8
Q ss_pred eeecCCCCceecC------ceeCCCC
Q 032832 108 IVRCKSCGRVKLP------HFFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~klp------H~vC~~g 127 (132)
-.+|++|++..-. ..||+.|
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~ 49 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKC 49 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTT
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCC
Confidence 3689999987433 4899876
No 29
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=27.17 E-value=20 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.7
Q ss_pred CCCCCCCeeecCCCCceecCceeCC
Q 032832 101 ALKPVPVIVRCKSCGRVKLPHFFCC 125 (132)
Q Consensus 101 ~lk~~~~L~~Cp~CGe~klpH~vC~ 125 (132)
.+....+...||+||+..+....|-
T Consensus 23 ~~t~~~~k~FCp~CGn~TL~Rvsvs 47 (79)
T 2con_A 23 KTTSDMNRVFCGHCGNKTLKKVSVT 47 (79)
T ss_dssp CEESCSSCCSCSSSCCSCCEEEECB
T ss_pred eECCCcccccccccCcccceEEEEE
Confidence 3444567789999999988777663
No 30
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.69 E-value=22 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.0
Q ss_pred eeecCCCCceecC
Q 032832 108 IVRCKSCGRVKLP 120 (132)
Q Consensus 108 L~~Cp~CGe~klp 120 (132)
-..||.||...-+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3479999998654
No 31
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=25.61 E-value=61 Score=23.65 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=17.9
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCeeecCCCCceec
Q 032832 84 PKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKL 119 (132)
Q Consensus 84 PKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~kl 119 (132)
||+|++.-|..+-|+| ...+.|.+||....
T Consensus 2 ~kKRrN~GR~KkgrGh------v~~V~C~nCgr~vP 31 (119)
T 3u5c_a 2 PKKRASNGRNKKGRGH------VKPVRCVNCSKSIP 31 (119)
T ss_dssp CCCCSSTTSCCCSCSC------CCEEECTTTCCEEE
T ss_pred CcccccCCCCCCCCCC------CccEeecccccccc
Confidence 5555554444333333 45678999998653
No 32
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.27 E-value=26 Score=27.53 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=15.5
Q ss_pred eeecCCCCcee-----cCceeCCCC
Q 032832 108 IVRCKSCGRVK-----LPHFFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~k-----lpH~vC~~g 127 (132)
...|+.||+.. ..-.+|+.|
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C 131 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHC 131 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSS
T ss_pred CCccccCCCcCccCCCceeeeCCCC
Confidence 45899999987 455788887
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.23 E-value=40 Score=20.94 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=4.9
Q ss_pred eecCCCCc
Q 032832 109 VRCKSCGR 116 (132)
Q Consensus 109 ~~Cp~CGe 116 (132)
..||.||.
T Consensus 12 ~~Cp~C~~ 19 (58)
T 1dl6_A 12 VTCPNHPD 19 (58)
T ss_dssp CSBTTBSS
T ss_pred ccCcCCCC
Confidence 35777764
No 34
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.94 E-value=34 Score=21.21 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.1
Q ss_pred CeeecCCCCce-ecCceeCCCCcc
Q 032832 107 VIVRCKSCGRV-KLPHFFCCSGER 129 (132)
Q Consensus 107 ~L~~Cp~CGe~-klpH~vC~~gy~ 129 (132)
..=+|.+|++. -..++.|..||.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 45579999988 445688888864
No 35
>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae}
Probab=23.61 E-value=37 Score=19.29 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.2
Q ss_pred CCcceeeeCCCCC
Q 032832 75 AGSMELMAVPKKK 87 (132)
Q Consensus 75 ~~~~~lMAVPKrK 87 (132)
.+.|++|+-||-|
T Consensus 16 ~~~m~L~~PP~~~ 28 (30)
T 2f49_C 16 NPNLILAAPPKER 28 (30)
T ss_pred CCCceEeCCCccc
Confidence 4567899999876
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=22.54 E-value=30 Score=23.37 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=12.6
Q ss_pred eeecCCCCceecCc-----eeCCCC
Q 032832 108 IVRCKSCGRVKLPH-----FFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~klpH-----~vC~~g 127 (132)
.-.||.||...+.- -.|++|
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~C 51 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYC 51 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTT
T ss_pred cCcCCCCCCcceeccCCCeEECCCC
Confidence 44788888854322 457776
No 37
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.80 E-value=28 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=10.0
Q ss_pred CCeeecCCCCceec
Q 032832 106 PVIVRCKSCGRVKL 119 (132)
Q Consensus 106 ~~L~~Cp~CGe~kl 119 (132)
|.--.||.||..|-
T Consensus 28 P~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 28 PDDWCCPVCGVSKD 41 (46)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCcCCCCcHH
Confidence 44458999998753
No 38
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.52 E-value=1.2e+02 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=10.4
Q ss_pred eecCCCC--ceecCc---eeCCCC
Q 032832 109 VRCKSCG--RVKLPH---FFCCSG 127 (132)
Q Consensus 109 ~~Cp~CG--e~klpH---~vC~~g 127 (132)
..||+|| -+...| ..|+.|
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC 137 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKC 137 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTT
T ss_pred ccCCccCCCccccCccCCCccCCc
Confidence 4577777 233333 366665
No 39
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.13 E-value=23 Score=23.06 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=6.5
Q ss_pred CeeecCCCCce
Q 032832 107 VIVRCKSCGRV 117 (132)
Q Consensus 107 ~L~~Cp~CGe~ 117 (132)
.+..||.|+..
T Consensus 7 ~iL~CP~ck~~ 17 (68)
T 2hf1_A 7 EILVCPLCKGP 17 (68)
T ss_dssp EECBCTTTCCB
T ss_pred hheECCCCCCc
Confidence 35566666654
No 40
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.97 E-value=29 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.597 Sum_probs=16.0
Q ss_pred eeecCCCCceecC------ceeCCCC
Q 032832 108 IVRCKSCGRVKLP------HFFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~klp------H~vC~~g 127 (132)
-.+|++|++..-. ..+|+.|
T Consensus 30 ~~kc~~~~~~~y~~~l~~~~~v~p~~ 55 (285)
T 2f9i_B 30 MTKCPKCKKIMYTKELAENLNVCFNC 55 (285)
T ss_dssp EEECTTTCCEEEHHHHHHTTTBCTTT
T ss_pred HHhhHhhCCccchhhhHHhcCcCCCC
Confidence 3789999998554 5799987
No 41
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.76 E-value=24 Score=22.95 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=7.5
Q ss_pred CeeecCCCCcee
Q 032832 107 VIVRCKSCGRVK 118 (132)
Q Consensus 107 ~L~~Cp~CGe~k 118 (132)
.+..||.|+...
T Consensus 7 ~iL~CP~ck~~L 18 (68)
T 2jr6_A 7 DILVCPVTKGRL 18 (68)
T ss_dssp CCCBCSSSCCBC
T ss_pred hheECCCCCCcC
Confidence 455677777653
No 42
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.55 E-value=14 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=14.8
Q ss_pred eeecCCCCcee-------cCceeCCCCcc
Q 032832 108 IVRCKSCGRVK-------LPHFFCCSGER 129 (132)
Q Consensus 108 L~~Cp~CGe~k-------lpH~vC~~gy~ 129 (132)
.+.|..|-..+ .+.+||..||.
T Consensus 44 ~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~ 72 (90)
T 3t7l_A 44 KVFCGVCCNRKCKLQYLEKEARVCVVCYE 72 (90)
T ss_dssp CEECGGGSCEEEEETTTTEEEEECHHHHH
T ss_pred CEECCcccCCeeecCCCCCCCeECHHHHH
Confidence 34666666553 46799988875
No 43
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.43 E-value=35 Score=25.56 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=14.0
Q ss_pred CCeeecCCCCcee----cCceeCCCC
Q 032832 106 PVIVRCKSCGRVK----LPHFFCCSG 127 (132)
Q Consensus 106 ~~L~~Cp~CGe~k----lpH~vC~~g 127 (132)
.++-.||+|+..- -...+||.|
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPeC 50 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPEC 50 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETTT
T ss_pred ccCCCCCCCCCcceEecCCeEECCcc
Confidence 3456788887643 234778877
No 44
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.29 E-value=35 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=15.6
Q ss_pred eecCCCCceecC-------ceeCCCCc
Q 032832 109 VRCKSCGRVKLP-------HFFCCSGE 128 (132)
Q Consensus 109 ~~Cp~CGe~klp-------H~vC~~gy 128 (132)
..|+.||.++.. =+.||.|-
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 479999998754 56788884
No 45
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.08 E-value=40 Score=27.29 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=12.5
Q ss_pred eeecCCCCce----ec----CceeCCCC
Q 032832 108 IVRCKSCGRV----KL----PHFFCCSG 127 (132)
Q Consensus 108 L~~Cp~CGe~----kl----pH~vC~~g 127 (132)
...||+||.. .. --.||..|
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~C 48 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC 48 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSS
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCC
Confidence 4478888874 22 24578776
Done!