BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032833
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 149 bits (377), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTV 59
MT ML L GGK+LVILEGGYNLRSIS+SAT+VIKVLLGENP EL + PS +GL TV
Sbjct: 424 MTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTV 483
Query: 60 LEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQI 119
L+VL IQ+ FWPSLA +++L S E ENKK Q+K+ + P WWKWGRK+LLY
Sbjct: 484 LDVLNIQLEFWPSLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNF 542
Query: 120 IKGHLRVRSR 129
+ + RS+
Sbjct: 543 LSARMISRSK 552
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD--SAPSKSGLVT 58
MTHML +L+ G L V+LEGGYNL +I+ SA SV KVL+GE P EL D S P +
Sbjct: 358 MTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPPD-ELPDPLSDPKPEVIEM 416
Query: 59 VLEVLKIQMNFWPSLASR 76
+ +V+++Q +W R
Sbjct: 417 IDKVIRLQSKYWNCFRRR 434
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSG-LVTV 59
+TH+L L+GG++++ILEGGYNL SIS S + LLG+ P +L P +SG LV++
Sbjct: 761 LTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDPPP-QLTLLRPPQSGALVSI 819
Query: 60 LEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPI 106
EV+++ +W SL R +++ E + + IKK+ +P+
Sbjct: 820 SEVIQVHRKYWRSL--RLMKMEDKEE---CSSSRLVIKKLPPTASPV 861
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDS--APSKSGLVT 58
+TH+L L+GGKL++ LEGGYNLR+++ ++ + LLG+ C + +S P S +
Sbjct: 365 LTHLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDP--CPMLESCVVPCASAQTS 422
Query: 59 VLEVLKIQMNFWPSL 73
+ L+ FW L
Sbjct: 423 IYCTLEALEPFWEVL 437
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
MT ML L+ GK+ + LEGGYNL SIS+SA +V + LLG PG L + + T+
Sbjct: 347 MTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPG-RLHTTYACPQAVATIN 405
Query: 61 EVLKIQMNFW 70
V KIQ +W
Sbjct: 406 HVTKIQSQYW 415
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCELGDS---APSKSG 55
MT L + + GK+++ LEGGYNL SIS++A ++ L+GE + G DS P++S
Sbjct: 780 MTKCLLSYANGKVVLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQSA 839
Query: 56 LVTVLEVLKIQMNFWPSL-----ASRFTELQ 81
L T+ +V+ I FWP+L A TE+Q
Sbjct: 840 LETLQKVIAIHKGFWPALHGQEAAINTTEMQ 870
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
+T +L L+GG++ +LEGGY+L S++ S +++ LLG+ LG P +S L ++
Sbjct: 285 LTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQ 344
Query: 61 EVLKIQMNFWPSL 73
V Q +W SL
Sbjct: 345 SVQTAQTPYWTSL 357
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG------ENPGCELGDSAPSKS 54
+TH+L L+GGKL++ LEGGYNLR+++ ++ + LLG E+PG AP +S
Sbjct: 366 LTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPG------APCRS 419
Query: 55 GLVTVLEVLKIQMNFWPSLASRFTE 79
+V L+ FW L R TE
Sbjct: 420 AQASVSCALEALEPFWEVLV-RSTE 443
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
+TH+L L+ G++++ILEGGYNL SIS S + + LLG+ P P L ++
Sbjct: 762 LTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASIT 821
Query: 61 EVLKIQMNFWPSL 73
E +++ +W SL
Sbjct: 822 ETIQVHRRYWRSL 834
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD------SAPSK- 53
MT+ L++L+GG+++ +LEGGYNL SIS+SA +V +VL + L + + P K
Sbjct: 711 MTYQLSSLAGGRIITVLEGGYNLTSISNSAQAVCEVLQNRSMLRRLREEKEQFATKPQKI 770
Query: 54 --SGLVTVLEVLKIQMNFWPSL 73
S + T+ EV +Q +W L
Sbjct: 771 ESSCIKTIREVCAVQQKYWSIL 792
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 3 HMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGL---VTV 59
+ L +L+ G++LV+LEGGYN + + + ++VLLG P + AP +S + V++
Sbjct: 297 YHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEAPKESTVDSCVSL 356
Query: 60 LEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRAD 103
+ VL+ N + SR + + W I + RRAD
Sbjct: 357 VSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRAD 400
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 14/93 (15%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG-------DSAPSK 53
MT L + GK+++ LEGGY+L+SIS +A ++ L+GE+ + G +S P+
Sbjct: 760 MTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESD--DAGRLSSVALESLPNP 817
Query: 54 SGLVTVLEVLKIQMNFWPSL-----ASRFTELQ 81
S + T+ +V+ I ++WP+L A TE+Q
Sbjct: 818 SAVETLQKVIAIHKSYWPALHGQEAAINTTEMQ 850
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
+T +L L+GG++ +LEGGY+L S++ S ++ LLG+ G AP +S L ++
Sbjct: 285 LTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQ 344
Query: 61 EVLKIQMNFWPSLASR 76
Q W SL +
Sbjct: 345 SARAAQAPHWKSLQQQ 360
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
M L + GK+++ LEGGYNL SI+ S+ + ++VLL + ++ P +S +
Sbjct: 311 MLKKLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQ 370
Query: 61 EVLKIQMNFWPSLASRFT 78
V K +WPSLA +
Sbjct: 371 AVRKRLCTYWPSLADELS 388
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVL 60
M L + GK+++ LEGGYNL S+ S+ + ++VLL + ++ P +S +
Sbjct: 344 MLKKLMEFAHGKIVLALEGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQ 403
Query: 61 EVLKIQMNFWPSLASRFTELQSLWEIYAAEN 91
V + +WPSL + ++L A N
Sbjct: 404 AVRERLCTYWPSLDASMASNENLKNPSAERN 434
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LLG +P E + P+ + +
Sbjct: 956 LTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVR 1015
Query: 58 TVLEVLKIQMNFWPSLA-SRFTELQSLWEIYAAENKKKQ 95
++ +V++I +W L + T +SL E EN++ +
Sbjct: 1016 SMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAE 1054
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LL P E + PS + +
Sbjct: 975 LTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSINAVA 1034
Query: 58 TVLEVLKIQMNFWPSLASRFTELQ-SLWEIYAAENKKKQ 95
T+ +V++IQ W + T L SL E A E ++ +
Sbjct: 1035 TLEKVIEIQSKHWSCVQRFATGLGCSLQEAQAGETEEAE 1073
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 10 GGKLLVILEGGYNLRSISSSATSVIKVLLGEN 41
GG+ + LEGGYNL S+SSS + LLGE+
Sbjct: 359 GGRCVFFLEGGYNLESLSSSVADSFRALLGED 390
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCELG-DSAPSKSGLV 57
MT L L+GG +++ LEGG++L +I ++ + + LLG +P E G P+ + +
Sbjct: 823 MTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIR 882
Query: 58 TVLEVLKIQMNFW 70
++ V+++ +W
Sbjct: 883 SLEAVIRVHSKYW 895
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSK------- 53
+T L L+GG++++ LEGG++L +I ++ + + LLG EL D P K
Sbjct: 952 LTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGN----EL-DPLPEKVLQQRAN 1006
Query: 54 -SGLVTVLEVLKIQMNFWPSLASRFTEL-QSLWEIYAAENKKKQ 95
+ + ++ +V++I +W SL + + SL E EN++ +
Sbjct: 1007 ANAVHSMEKVIEIHSKYWHSLQRYASTVGYSLVEAQKCENEEAE 1050
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LL P E + PS + +
Sbjct: 977 LTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVA 1036
Query: 58 TVLEVLKIQMNFWPSLASRF 77
T+ +V++IQ W S RF
Sbjct: 1037 TLEKVIEIQSKHW-SCVQRF 1055
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCELG-DSAPSKSGLV 57
MT L L+GG +++ LEGG++L +I ++ + + LLG +P E P+ S +
Sbjct: 810 MTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQKPNLSAIR 869
Query: 58 TVLEVLKIQMNFW 70
++ V+++ +W
Sbjct: 870 SLEAVVRVHRKYW 882
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG+L++ LEGG++L +I ++ + + LLG P E + P+ + +
Sbjct: 948 LTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVH 1007
Query: 58 TVLEVLKIQMNFWPSL 73
++ +V+ I +W L
Sbjct: 1008 SMEKVMDIHSKYWRCL 1023
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LLG P E + P+ + +
Sbjct: 949 LTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVH 1008
Query: 58 TVLEVLKIQMNFWPSLASRFTEL--QSLWEIYAAENKKKQ 95
++ +V+ I +W L R + SL E EN++ +
Sbjct: 1009 SMEKVMGIHSEYWRCL-QRLSPTVGHSLIEAQKCENEEAE 1047
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LL P E + P+ + +
Sbjct: 986 LTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVA 1045
Query: 58 TVLEVLKIQMNFWPSLASRFTEL-QSLWEIYAAENKKKQ 95
T+ +V++IQ W + L +SL E A E ++ +
Sbjct: 1046 TLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGETEEAE 1084
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLV 57
+T L L+GG++++ LEGG++L +I ++ + + LL P E + P+ + +
Sbjct: 986 LTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVA 1045
Query: 58 TVLEVLKIQMNFWPSLASRFTEL-QSLWEIYAAENKKKQ 95
T+ +V++IQ W + L +SL E A E ++ +
Sbjct: 1046 TLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGETEEAE 1084
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLV 57
+T L L+ G++++ LEGG++L +I ++ + + LLG E ++ +P+ + ++
Sbjct: 936 LTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVI 995
Query: 58 TVLEVLKIQ 66
++ ++++IQ
Sbjct: 996 SLQKIIEIQ 1004
>sp|Q03CY0|TRPD_LACC3 Anthranilate phosphoribosyltransferase OS=Lactobacillus casei
(strain ATCC 334) GN=trpD PE=3 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 13 LLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD-SAPSKSGLVTVLEVLKIQMNFWP 71
L ++ GG + + + S TS I V + G+ +A SKSG VLE L + +N P
Sbjct: 75 LEIVGTGGDHANTFNISTTSAIVVAATGTQVAKHGNRAASSKSGAADVLEALGLDINETP 134
Query: 72 SLASRFTELQSLWEIYAAENKK--KQIKKIRR 101
+++ + +L ++A E K K + +R+
Sbjct: 135 AVSYESLQENNLAFLFAQEYHKSMKYVATVRK 166
>sp|B3W6W9|TRPD_LACCB Anthranilate phosphoribosyltransferase OS=Lactobacillus casei
(strain BL23) GN=trpD PE=3 SV=1
Length = 341
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 13 LLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD-SAPSKSGLVTVLEVLKIQMNFWP 71
L ++ GG + + + S TS I V + G+ +A SKSG VLE L + +N P
Sbjct: 75 LEIVGTGGDHANTFNISTTSAIVVAATGTQVAKHGNRAASSKSGAADVLEALGLDINETP 134
Query: 72 SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQII 120
+++ + +L ++A E K +K + AP+ + G R ++ I+
Sbjct: 135 AVSYESLQENNLAFLFAQE-YHKSMKYV----APVRKQLGF-RTIFNIL 177
>sp|P17170|TRPD_LACCA Anthranilate phosphoribosyltransferase OS=Lactobacillus casei
GN=trpD PE=3 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 13 LLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD-SAPSKSGLVTVLEVLKIQMNFWP 71
L ++ GG + + + S TS I V + G+ +A SKSG VLE L + +N P
Sbjct: 75 LEIVGTGGDHANTFNISTTSAIVVAATGTRVAKHGNRAASSKSGAADVLEALGLDINETP 134
Query: 72 SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQII 120
+++ + +L ++A E K +K + AP+ + G R ++ I+
Sbjct: 135 AVSYESLQENNLAFLFAQE-YHKSMKYV----APVRKQLGF-RTIFNIL 177
>sp|Q88WI3|TRPD_LACPL Anthranilate phosphoribosyltransferase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=trpD PE=3
SV=1
Length = 339
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 13 LLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD-SAPSKSGLVTVLEVLKIQMNFWP 71
L ++ GG S + S T+ + V P + G+ +A SKSG VLE L I+++ P
Sbjct: 75 LEIVGTGGDRSNSFNISTTTALVVAAAGVPVTKHGNRAASSKSGAADVLEALGIKIDLTP 134
Query: 72 SLASRFTELQSLWEIYAAE 90
+ + E + +YA E
Sbjct: 135 AQSLALLERTNFAFMYARE 153
>sp|B0BNA9|CB029_RAT UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 504
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 56 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 90
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 98 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 132
>sp|Q9CWN7|CB029_MOUSE UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2
SV=1
Length = 505
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 56 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 90
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 99 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 133
>sp|Q9UKZ1|CB029_HUMAN UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1
Length = 510
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 56 LVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 90
L +VL +L Q + PS A R T L LWE+Y E
Sbjct: 104 LGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTE 138
>sp|B8M3A8|PURA_TALSN Adenylosuccinate synthetase OS=Talaromyces stipitatus (strain ATCC
10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=TSTA_095260
PE=3 SV=1
Length = 422
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 43 GCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRA 102
G L DS P+ L+ LEV I + W + T+ + L EN +K ++ I R
Sbjct: 347 GTRLEDSYPADPNLIEKLEVEYITLPGWKTNTMGLTKYEDL-----PENAQKYVEYIERG 401
Query: 103 --DAPIWW 108
PI W
Sbjct: 402 LDGVPIKW 409
>sp|A4QP78|CB029_DANRE UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2
SV=1
Length = 445
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 55 GLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAE 90
G+ +VL +L Q + PS R T L LWE+Y E
Sbjct: 42 GVGSVLVMLLQQPDLLPSAPQRLTALYLLWEMYRTE 77
>sp|Q95KH6|RGF1C_MACFA Ras-GEF domain-containing family member 1C OS=Macaca fascicularis
GN=RASGEF1C PE=2 SV=1
Length = 466
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 39 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 82
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|Q8N431|RGF1C_HUMAN Ras-GEF domain-containing family member 1C OS=Homo sapiens
GN=RASGEF1C PE=2 SV=2
Length = 466
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 39 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 82
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|Q5P2G2|TRPD_AROAE Anthranilate phosphoribosyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=trpD PE=3 SV=1
Length = 343
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 47 GDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKK--KQIKKIRR 101
G S SKSG VLE L +++ P + E + +YA + K + +RR
Sbjct: 116 GRSVSSKSGAADVLEALGVKLGLAPEQVAESIEATGIGFMYAPAHHSAMKNVAAVRR 172
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 81 QSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGH 123
+ +W AE ++K ++ +R D P W+ ++ Y K H
Sbjct: 1423 KGMWNKIPAEEREKYVEAMREHDVPEWYIESCSKIKYMFPKAH 1465
>sp|Q2KHV9|K2013_BOVIN Uncharacterized protein KIAA2013 homolog OS=Bos taurus PE=2 SV=1
Length = 634
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 68 NFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAP 105
N WP S ++ LW+++ +K+ K + RA AP
Sbjct: 411 NLWPGRLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAP 448
>sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C OS=Mus musculus
GN=Rasgef1c PE=2 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 39 GENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQS 82
GE G L D APS + L T+++ L +++P A FT L S
Sbjct: 26 GEQAGQPLLDGAPSSASLDTLIQHLVPTADYYPEKAYIFTFLLS 69
>sp|A4IH88|K2013_XENTR Uncharacterized protein KIAA2013 homolog OS=Xenopus tropicalis PE=2
SV=1
Length = 608
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 68 NFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADA 104
N WPS S T+L LW+++ +K+ K + A A
Sbjct: 385 NLWPSSLSGITQLLQLWDLWKLTLQKRGCKSLVSAGA 421
>sp|P72702|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0245 PE=3 SV=1
Length = 304
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLL 38
MTH L +S +L LEGGY+L S++ S +K LL
Sbjct: 267 MTHYLMEISPYPVLG-LEGGYHLPSLAKSVVETLKPLL 303
>sp|A7TMC5|ATG23_VANPO Autophagy-related protein 23 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG23 PE=3 SV=1
Length = 491
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 62 VLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQ 95
VL ++N W + ++ +L++ +IY ++NKKK+
Sbjct: 314 VLNQKINLWEQVINQLNDLENSLKIYLSKNKKKK 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,064,235
Number of Sequences: 539616
Number of extensions: 1556569
Number of successful extensions: 4310
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4261
Number of HSP's gapped (non-prelim): 61
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)