Query 032833
Match_columns 132
No_of_seqs 130 out of 861
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1343 Histone deacetylase co 99.3 4.3E-12 9.3E-17 115.3 7.0 74 1-74 719-795 (797)
2 KOG1343 Histone deacetylase co 98.3 5.3E-07 1.2E-11 82.5 4.1 65 10-75 326-390 (797)
3 PTZ00346 histone deacetylase; 97.7 0.00014 3.1E-09 62.8 7.8 41 2-43 300-340 (429)
4 COG0123 AcuC Deacetylases, inc 97.4 0.00017 3.7E-09 60.5 4.6 34 10-43 282-315 (340)
5 PTZ00063 histone deacetylase; 96.7 0.0019 4.1E-08 56.0 4.2 38 2-40 282-319 (436)
6 PF09757 Arb2: Arb2 domain; I 90.3 0.26 5.6E-06 37.4 2.7 26 50-75 9-34 (178)
7 KOG3208 SNARE protein GS28 [In 55.5 21 0.00045 28.8 4.1 39 49-87 81-119 (231)
8 PF09846 DUF2073: Uncharacteri 48.5 19 0.0004 25.7 2.5 48 5-53 14-61 (104)
9 PF11623 DUF3252: Protein of u 47.5 9.3 0.0002 24.0 0.8 15 6-20 25-39 (53)
10 cd07047 BMC_PduB_repeat1 1,2-p 40.3 40 0.00087 25.0 3.3 30 10-39 76-105 (134)
11 COG3365 Uncharacterized protei 38.5 24 0.00051 25.6 1.8 39 5-44 27-65 (118)
12 cd07227 Pat_Fungal_NTE1 Fungal 36.3 34 0.00075 27.7 2.7 34 3-39 1-34 (269)
13 PF09831 DUF2058: Uncharacteri 34.5 20 0.00044 27.7 1.0 30 4-35 112-142 (177)
14 TIGR03354 VI_FHA type VI secre 26.2 2.2E+02 0.0048 24.4 6.1 78 14-94 266-343 (396)
15 cd07225 Pat_PNPLA6_PNPLA7 Pata 24.2 80 0.0017 26.0 3.0 36 2-37 5-40 (306)
16 PRK14542 nucleoside diphosphat 23.9 1.2E+02 0.0026 22.1 3.6 30 4-41 61-91 (137)
17 COG5105 MIH1 Mitotic inducer, 22.6 39 0.00085 29.1 0.8 10 13-22 344-353 (427)
18 KOG1342 Histone deacetylase co 22.0 1.1E+02 0.0024 26.7 3.5 32 11-42 292-323 (425)
19 PF11997 DUF3492: Domain of un 21.9 91 0.002 25.2 2.8 26 12-37 2-29 (268)
20 PF00334 NDK: Nucleoside dipho 20.3 94 0.002 22.0 2.3 30 4-41 60-90 (135)
No 1
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.30 E-value=4.3e-12 Score=115.30 Aligned_cols=74 Identities=32% Similarity=0.643 Sum_probs=67.3
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCcchh
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLA 74 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~---~~~ps~~~~~~i~~v~~~h~~yW~~l~ 74 (132)
||++|+++++||++++||||||+.++++|+.+|+++|+|++.+.++. +.+|+..+..+++.++.+|++||.|++
T Consensus 719 lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~ 795 (797)
T KOG1343|consen 719 LTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQ 795 (797)
T ss_pred HHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhccccccc
Confidence 68999999999999999999999999999999999999988766332 467788899999999999999999986
No 2
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=98.30 E-value=5.3e-07 Score=82.52 Aligned_cols=65 Identities=29% Similarity=0.474 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcchhh
Q 032833 10 GGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLAS 75 (132)
Q Consensus 10 ~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~~~~ps~~~~~~i~~v~~~h~~yW~~l~~ 75 (132)
+|+++++|||||+++.++.+ ..++..|+|++++....+..|..++.+++..+.++|.+||+|+..
T Consensus 326 r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~ 390 (797)
T KOG1343|consen 326 RGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGG 390 (797)
T ss_pred cCccceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccC
Confidence 38999999999999999999 999999999987776666668899999999999999999999964
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=97.71 E-value=0.00014 Score=62.81 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=35.3
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
++++.++ +++++++||||||+.++++|.+.++..|+|.+.+
T Consensus 300 ~~~l~~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~ 340 (429)
T PTZ00346 300 VQAVRDL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLP 340 (429)
T ss_pred HHHHHhc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCC
Confidence 4555554 6799999999999999999999999999998744
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.45 E-value=0.00017 Score=60.52 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=30.9
Q ss_pred CCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 10 GGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 10 ~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
+|+++++|||||++++++.++.+++.+|.|.+..
T Consensus 282 ~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~ 315 (340)
T COG0123 282 GGPVVAVLEGGYNLDALARSLVAFLAGLAGLVEE 315 (340)
T ss_pred CCCeEEEecCCCChHHHHHHHHHHHHHHcCCCcc
Confidence 5799999999999999999999999999996533
No 5
>PTZ00063 histone deacetylase; Provisional
Probab=96.71 E-value=0.0019 Score=56.04 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=32.8
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE 40 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~ 40 (132)
++.+.+ .++++++++||||++.+++.|.+.....++|.
T Consensus 282 ~~~~~~-~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 282 VEFVRS-LNIPLLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred HHHHHh-cCCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 345555 46799999999999999999999999999985
No 6
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=90.28 E-value=0.26 Score=37.36 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHHHHhccCcchhh
Q 032833 50 APSKSGLVTVLEVLKIQMNFWPSLAS 75 (132)
Q Consensus 50 ~ps~~~~~~i~~v~~~h~~yW~~l~~ 75 (132)
.+++.+.+++.+|+.+|++||+||.+
T Consensus 9 ~~~~~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 9 VASPSAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp ---HHHHHHHHHHHHHHTTT-GGGTS
T ss_pred CCCHHHeeeHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999965
No 7
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.51 E-value=21 Score=28.80 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHH
Q 032833 49 SAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIY 87 (132)
Q Consensus 49 ~~ps~~~~~~i~~v~~~h~~yW~~l~~~~~~~~~~~~~~ 87 (132)
+.++.....++.+-+++.+.||.-+....+.+.+.++..
T Consensus 81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~ 119 (231)
T KOG3208|consen 81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERE 119 (231)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999977666655555444
No 8
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.53 E-value=19 Score=25.70 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=34.5
Q ss_pred HhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCCCCCCCh
Q 032833 5 LNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSK 53 (132)
Q Consensus 5 L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~~~~ps~ 53 (132)
|+.+.+|. ++|||+|-.++--+.=...+++...-++.+.++....|..
T Consensus 14 Ld~Vk~G~-IvVLE~GLtPeEe~~LIE~TM~eI~~d~F~GIEiesyp~~ 61 (104)
T PF09846_consen 14 LDKVKDGN-IVVLEEGLTPEEESKLIEMTMTEIDPDEFSGIEIESYPSK 61 (104)
T ss_pred HhhcccCc-EEEEcCCCChHHHHHHHHHHHHhcCccccCceEEEecCcc
Confidence 56666665 5789999999988888888888776556655554445543
No 9
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=47.53 E-value=9.3 Score=24.03 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=13.0
Q ss_pred hhccCCcEEEEecCC
Q 032833 6 NALSGGKLLVILEGG 20 (132)
Q Consensus 6 ~~l~~Grlv~vLEGG 20 (132)
..+.+|+.++.+|||
T Consensus 25 QRvsdgkaaVLFEGG 39 (53)
T PF11623_consen 25 QRVSDGKAAVLFEGG 39 (53)
T ss_dssp EEEETTEEEEEEEET
T ss_pred EEeeCCeEEEEecCC
Confidence 456889999999998
No 10
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=40.34 E-value=40 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCcchHHHHHHHHHHHHcC
Q 032833 10 GGKLLVILEGGYNLRSISSSATSVIKVLLG 39 (132)
Q Consensus 10 ~Grlv~vLEGGYnl~sLa~sv~avlr~Llg 39 (132)
+|+-.+++-|||+..+..+++.+.++.+..
T Consensus 76 gGkg~vvitGg~dVs~V~~aVeaa~~~v~~ 105 (134)
T cd07047 76 AGHGSLILFGAEDVSDVRRAVEVALSETEK 105 (134)
T ss_pred CceEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 357789999999999988888777776643
No 11
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.45 E-value=24 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.0
Q ss_pred HhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCC
Q 032833 5 LNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGC 44 (132)
Q Consensus 5 L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~ 44 (132)
++..-+|. ++|||||-+++..++-...+++...=+....
T Consensus 27 id~vr~G~-IlVLE~gL~P~eeaklIe~TM~eId~e~F~G 65 (118)
T COG3365 27 IDKVREGD-ILVLEGGLTPEEEAKLIEMTMSEIDPENFSG 65 (118)
T ss_pred HHhccCCc-EEEEeCCCChHHHHHHHHHHHHhcCcccccc
Confidence 34555554 5789999999999888888887765444333
No 12
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=36.34 E-value=34 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=24.0
Q ss_pred hHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcC
Q 032833 3 HMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG 39 (132)
Q Consensus 3 ~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg 39 (132)
+++..+++-++.+|||||=-..... ..++++|..
T Consensus 1 rlar~l~g~~igLVL~GGGaRG~ah---iGVL~aLeE 34 (269)
T cd07227 1 RLARRLCGQAIGLVLGGGGARGISH---IGILQALEE 34 (269)
T ss_pred ChhhHhcCCCEEEEECCcHHHHHHH---HHHHHHHHH
Confidence 3566788889999999997766444 445566643
No 13
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=34.46 E-value=20 Score=27.74 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=20.5
Q ss_pred HHhhccCCcEEEE-ecCCCCcchHHHHHHHHHH
Q 032833 4 MLNALSGGKLLVI-LEGGYNLRSISSSATSVIK 35 (132)
Q Consensus 4 ~L~~l~~Grlv~v-LEGGYnl~sLa~sv~avlr 35 (132)
+...+..|++++| |+|||.+- +..+..=+.
T Consensus 112 ~~~~L~~G~LaIv~l~~~y~lV--P~~vAeKI~ 142 (177)
T PF09831_consen 112 QQKQLSAGRLAIVRLEGGYELV--PAEVAEKIA 142 (177)
T ss_pred HHHHHhcCEEEEEEECCEEEEe--eHHHHHHHH
Confidence 4567889997665 99999874 444444444
No 14
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=26.16 E-value=2.2e+02 Score=24.39 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=55.1
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhHHHHHHHHhhhhhh
Q 032833 14 LVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKK 93 (132)
Q Consensus 14 v~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~~~~ps~~~~~~i~~v~~~h~~yW~~l~~~~~~~~~~~~~~~~~~~~ 93 (132)
-.+.-.+.|+=-++-.+..+++.|++.+.+ .-..|...+.+++.++..+|...+..++..+..+..+...-.|+...
T Consensus 266 T~i~~~enNPLKf~~~~~~al~~m~~~~~~---g~Ls~~~Ai~ea~~Dl~~Hq~a~~aa~~~Al~~~l~~f~P~~le~~~ 342 (396)
T TIGR03354 266 TTIRPAENNPLKFSADYDEALAVLLAPRSP---GHLSAEAAIEEAFRDLRAHQVALLAAVRAALRRMLDAFSPEALEARF 342 (396)
T ss_pred eeecccCCCCcccCCCHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456667788777777888889998875322 12355567788899999999999999988777766666555555444
Q ss_pred h
Q 032833 94 K 94 (132)
Q Consensus 94 ~ 94 (132)
.
T Consensus 343 ~ 343 (396)
T TIGR03354 343 E 343 (396)
T ss_pred h
Confidence 4
No 15
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=24.24 E-value=80 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=24.8
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHH
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVL 37 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~L 37 (132)
-+++..+.+.++.+|||||=-.....-++...++..
T Consensus 5 ~rl~r~l~~~~~gLvL~GGG~RG~ahiGvL~aLee~ 40 (306)
T cd07225 5 SRLARVLTGNSIALVLGGGGARGCAHIGVIKALEEA 40 (306)
T ss_pred HHHHHHhcCCCEEEEECChHHHHHHHHHHHHHHHHc
Confidence 356777888899999999977665554444444433
No 16
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=23.85 E-value=1.2e+02 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=20.9
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|+ ++++|||. .+.+.++.|+|..
T Consensus 61 Lv~~m~sGp~va~~l~g~--------nav~~~R~l~Gpt 91 (137)
T PRK14542 61 LCNYMSSGPIVAAALERD--------NAVLHWREVIGAT 91 (137)
T ss_pred HHHHHhcCCeEEEEEeCC--------CHHHHHHHHhCCC
Confidence 556677887 56779982 2345788999953
No 17
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=22.56 E-value=39 Score=29.11 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=8.7
Q ss_pred EEEEecCCCC
Q 032833 13 LLVILEGGYN 22 (132)
Q Consensus 13 lv~vLEGGYn 22 (132)
=|.||||||-
T Consensus 344 evyIl~GGYk 353 (427)
T COG5105 344 EVYILEGGYK 353 (427)
T ss_pred eEEEecCcHH
Confidence 3899999995
No 18
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=22.01 E-value=1.1e+02 Score=26.74 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=26.2
Q ss_pred CcEEEEecCCCCcchHHHHHHHHHHHHcCCCC
Q 032833 11 GKLLVILEGGYNLRSISSSATSVIKVLLGENP 42 (132)
Q Consensus 11 Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~ 42 (132)
-+++++=.|||++..++.|-+----.++|.+.
T Consensus 292 ~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~ 323 (425)
T KOG1342|consen 292 LPLLVLGGGGYTLRNVARCWTYETGVLLDQEL 323 (425)
T ss_pred CcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence 47888889999999999998777777777653
No 19
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=21.92 E-value=91 Score=25.16 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=21.3
Q ss_pred cEEEEecCCCCc--chHHHHHHHHHHHH
Q 032833 12 KLLVILEGGYNL--RSISSSATSVIKVL 37 (132)
Q Consensus 12 rlv~vLEGGYnl--~sLa~sv~avlr~L 37 (132)
+|.+++||.|-. +.++..+...++++
T Consensus 2 ~V~ll~EGtYPyv~GGVSsW~~~LI~gl 29 (268)
T PF11997_consen 2 DVCLLTEGTYPYVRGGVSSWVHQLIRGL 29 (268)
T ss_pred eEEEEecCcCCCCCCchhHHHHHHHhcC
Confidence 689999999875 47888888888876
No 20
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=20.29 E-value=94 Score=22.04 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=19.4
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
++..+++|+ ++++|+| ..+...++.|.|..
T Consensus 60 lv~~m~sgp~v~l~l~g--------~~av~~~r~l~Gp~ 90 (135)
T PF00334_consen 60 LVDFMSSGPSVALVLEG--------ENAVEKWRQLCGPT 90 (135)
T ss_dssp HHHHHTSSEEEEEEEES--------TTHHHHHHHHH--S
T ss_pred ccceeecCCcEEEEeec--------chhhHHHHHhcCCc
Confidence 456677887 6777888 44456778888843
Done!