Query 032833
Match_columns 132
No_of_seqs 130 out of 861
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 99.6 1.8E-16 6.2E-21 134.1 6.7 75 1-75 341-418 (421)
2 2vqm_A HD4, histone deacetylas 99.6 3.5E-15 1.2E-19 125.8 7.3 76 1-76 312-390 (413)
3 1zz1_A Histone deacetylase-lik 98.6 3.4E-08 1.2E-12 82.1 5.4 63 6-70 297-365 (369)
4 1c3p_A Protein (HDLP (histone 97.8 8.5E-06 2.9E-10 67.8 3.6 62 1-74 278-339 (375)
5 4a69_A Histone deacetylase 3,; 97.6 5.3E-05 1.8E-09 63.1 4.5 41 2-43 280-320 (376)
6 3max_A HD2, histone deacetylas 97.3 0.00016 5.6E-09 60.1 4.5 41 2-43 279-319 (367)
7 3ew8_A HD8, histone deacetylas 97.2 0.00023 8E-09 59.5 4.2 41 2-43 288-328 (388)
8 4a1x_C CP5-46-A peptide; hydro 52.6 7.8 0.00027 19.8 1.6 14 11-24 4-18 (26)
9 2jz2_A SSL0352 protein; SH3-li 45.4 7.8 0.00027 24.4 1.2 15 6-20 25-39 (66)
10 2jui_A PLNE; ampiphilic alpha 35.8 30 0.001 18.5 2.4 17 18-37 3-19 (33)
11 3mpd_A Nucleoside diphosphate 31.2 58 0.002 23.2 4.1 30 4-41 65-95 (151)
12 3q8u_A Nucleoside diphosphate 31.0 58 0.002 23.4 4.1 30 4-41 61-91 (157)
13 3evo_A NDP kinase, NDK, nucleo 29.4 54 0.0019 23.3 3.6 30 4-41 67-97 (146)
14 3l7u_A Nucleoside diphosphate 27.6 62 0.0021 23.7 3.8 30 4-41 84-114 (172)
15 1wkj_A Nucleoside diphosphate 27.0 76 0.0026 22.1 4.0 30 4-41 61-91 (137)
16 4fkx_A NDK B, nucleoside dipho 26.9 50 0.0017 23.9 3.1 30 4-41 71-101 (161)
17 3r9l_A Nucleoside diphosphate 26.5 66 0.0023 23.1 3.7 30 4-41 67-97 (155)
18 2vu5_A Nucleoside diphosphate 26.4 82 0.0028 22.2 4.2 30 4-41 61-91 (148)
19 3fkb_A NDP kinase, NDK, nucleo 24.3 61 0.0021 23.3 3.1 30 4-41 68-98 (155)
20 1k44_A Nucleoside diphosphate 23.0 91 0.0031 21.6 3.8 30 4-41 62-92 (136)
21 1w7w_A Nucleoside diphosphate 22.4 67 0.0023 23.7 3.1 30 4-41 92-122 (182)
22 1nb2_A Nucleoside diphosphate 22.4 89 0.003 22.1 3.7 30 4-41 62-92 (150)
23 4hr2_A Nucleoside diphosphate 21.3 81 0.0028 22.3 3.3 30 4-41 67-97 (145)
24 2hur_A NDK, nucleoside diphosp 20.7 85 0.0029 22.0 3.3 30 4-41 62-92 (142)
25 1u8w_A Nucleoside diphosphate 20.6 1.2E+02 0.004 21.4 4.0 30 4-41 61-91 (149)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.64 E-value=1.8e-16 Score=134.09 Aligned_cols=75 Identities=24% Similarity=0.511 Sum_probs=67.6
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCcchhh
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLAS 75 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~---~~~ps~~~~~~i~~v~~~h~~yW~~l~~ 75 (132)
||++|.++++||++++||||||+++|++|+.+++++|+|+++++++. ...|+..+.++|++|+++|++||+||++
T Consensus 341 ~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~~a~~~i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 341 MTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp HHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred HHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhHHHHh
Confidence 57889999999999999999999999999999999999988665432 3578899999999999999999999974
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.56 E-value=3.5e-15 Score=125.81 Aligned_cols=76 Identities=25% Similarity=0.531 Sum_probs=68.1
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCcchhhh
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLASR 76 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~---~~~ps~~~~~~i~~v~~~h~~yW~~l~~~ 76 (132)
||+++.++|+||++++||||||+++++.|+.+++++|+|++.++++. ...|+..+.++|++|+++|++||+||+..
T Consensus 312 ~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~~~~W~~l~~~ 390 (413)
T 2vqm_A 312 LTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRT 390 (413)
T ss_dssp HHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHTTCGGGTSC
T ss_pred HHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57889999999999999999999999999999999999988665543 25788999999999999999999999763
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=98.61 E-value=3.4e-08 Score=82.11 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred hhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCCC------CCCChhHHHHHHHHHHHHhccC
Q 032833 6 NALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD------SAPSKSGLVTVLEVLKIQMNFW 70 (132)
Q Consensus 6 ~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~~------~~ps~~~~~~i~~v~~~h~~yW 70 (132)
.++|+||++++||||||+++++.|+.+++++|+|.++ .+++ ..|+.+..+.+.++++..+.+|
T Consensus 297 ~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~--~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 297 ADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS--LPDPYHEFLAGMGGNTLLDAERAAIEEIVPLL 365 (369)
T ss_dssp HHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC--CCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGG
T ss_pred HHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC--CCCchhHHHhhccccchHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999876 2221 2233344455566666666666
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=97.85 E-value=8.5e-06 Score=67.79 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=46.3
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcchh
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLA 74 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~~~~ps~~~~~~i~~v~~~h~~yW~~l~ 74 (132)
|++++.+++. +++++||||||+.+++.|+.+++++|+|.+.+.. -|. ... -..+..+|++..
T Consensus 278 ~~~~l~~~a~-~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~----lp~-~~~------~~~~~~~~~~~~ 339 (375)
T 1c3p_A 278 AFNIVREVFG-EGVYLGGGGYHPYALARAWTLIWCELSGREVPEK----LNN-KAK------ELLKSIDFEEFD 339 (375)
T ss_dssp HHHHHHHHHC-SCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS----CCH-HHH------HHHHHSCCCCSS
T ss_pred HHHHHHHhcc-ceEEEECCCCChHHHHHHHHHHHHHHcCCCCCcc----CCH-HHH------HHHHhcCccccc
Confidence 4677888876 5999999999999999999999999999764321 221 122 223568899875
No 5
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=97.58 E-value=5.3e-05 Score=63.14 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=35.3
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
++++.++ ++|+++++||||++.+++.|.+.+...++|.+.+
T Consensus 280 ~~~l~~~-~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~ 320 (376)
T 4a69_A 280 VEYVKSF-NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320 (376)
T ss_dssp HHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHc-CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence 4556665 6899999999999999999999999999997643
No 6
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=97.35 E-value=0.00016 Score=60.08 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=35.2
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
++++.+ +++|+++++||||++.+++.|.+.+...++|.+.+
T Consensus 279 ~~~~~~-~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 279 VEVVKT-FNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp HHHHHT-TCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHh-cCCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 455555 47899999999999999999999999999997644
No 7
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=97.22 E-value=0.00023 Score=59.54 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=34.3
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
++++.+. +.++++++||||++.+++.|.+.+...|+|.+.+
T Consensus 288 ~~~l~~~-~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l~ 328 (388)
T 3ew8_A 288 LKYILQW-QLATLILGGGGYNLANTARCWTYLTGVILGKTLS 328 (388)
T ss_dssp HHHHHTT-CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhc-CCCEEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence 3455554 4689999999999999999999999999997643
No 8
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=52.59 E-value=7.8 Score=19.77 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=10.7
Q ss_pred CcEEEEecC-CCCcc
Q 032833 11 GKLLVILEG-GYNLR 24 (132)
Q Consensus 11 Grlv~vLEG-GYnl~ 24 (132)
||++..|.| ||++-
T Consensus 4 grlvylldgpgydpi 18 (26)
T 4a1x_C 4 GRLVYLLDGPGYDPI 18 (26)
T ss_pred ceEEEEecCCCCCce
Confidence 688888887 78753
No 9
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=45.40 E-value=7.8 Score=24.44 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=13.1
Q ss_pred hhccCCcEEEEecCC
Q 032833 6 NALSGGKLLVILEGG 20 (132)
Q Consensus 6 ~~l~~Grlv~vLEGG 20 (132)
..+++|+.++.+|||
T Consensus 25 QRvsdgkaaVLFEGG 39 (66)
T 2jz2_A 25 QRVSDGKAAVLFENG 39 (66)
T ss_dssp EEEETTEEEEEEESS
T ss_pred EEecCCcEEEEecCC
Confidence 457889999999998
No 10
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=35.81 E-value=30 Score=18.46 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=11.2
Q ss_pred cCCCCcchHHHHHHHHHHHH
Q 032833 18 EGGYNLRSISSSATSVIKVL 37 (132)
Q Consensus 18 EGGYnl~sLa~sv~avlr~L 37 (132)
-||||.. .|+..++.++
T Consensus 3 rggynfg---ksvrhvid~i 19 (33)
T 2jui_A 3 RGGYNFG---KSVRHVVDAI 19 (33)
T ss_dssp SCSCCSS---HHHHHHHHHH
T ss_pred ccccccc---hhHHHHHHHH
Confidence 4899977 5566665543
No 11
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=31.17 E-value=58 Score=23.24 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=21.2
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|+ ++++|||- -+....|.|+|..
T Consensus 65 Lv~~mtSGPvvamvleg~--------naV~~~R~l~G~t 95 (151)
T 3mpd_A 65 MVEDMMSGMVLAMVWVGK--------DAVSIGRKLIGET 95 (151)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEeCC--------cHHHHHHHHhCCC
Confidence 456677888 67789982 2455788999954
No 12
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=30.96 E-value=58 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=21.0
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|+ ++++|||- .+....+.|+|..
T Consensus 61 Lv~~mtSGPvvamvleg~--------naV~~~R~l~GpT 91 (157)
T 3q8u_A 61 LISFITSAPVFAMVVEGE--------DAVNVSRHIIGST 91 (157)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEeCC--------CHHHHHHHHcCCC
Confidence 455677888 57789982 2455788999953
No 13
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=29.42 E-value=54 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=21.2
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
++..++.|+ ++++|||- .+.+..|.|+|..
T Consensus 67 Lv~~mtSGPvva~vleg~--------naV~~~R~l~G~t 97 (146)
T 3evo_A 67 NCDFMVSGPIISIVYEGT--------DAISKIRRLQGNT 97 (146)
T ss_dssp HHHHHTSSCEEEEEEEET--------THHHHHHHHHCCS
T ss_pred HHHHHhcCCeEEEEEeCC--------CHHHHHHHHcCCC
Confidence 456677888 67789982 2455789999954
No 14
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=27.60 E-value=62 Score=23.71 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=21.2
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|+ ++++|||- .+.+..|.|+|..
T Consensus 84 Lv~~mtSGPvvamvleg~--------naV~~~R~l~GpT 114 (172)
T 3l7u_A 84 LVKYMHSGPVVAMVWEGL--------NVVKTGRVMLGET 114 (172)
T ss_dssp HHHHHHSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHHhcCCeEEEEEeCC--------CHHHHHHHHcCCC
Confidence 456677888 57789982 2456789999954
No 15
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=27.00 E-value=76 Score=22.08 Aligned_cols=30 Identities=17% Similarity=0.531 Sum_probs=21.3
Q ss_pred HHhhccCCcE-EEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGKL-LVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Grl-v~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|++ +++|||- .+....+.|+|..
T Consensus 61 Lv~~mtsGPvva~vl~g~--------~aV~~~R~l~G~t 91 (137)
T 1wkj_A 61 LVRFITSGPVVAMVLEGP--------GVVAEVRKMMGAT 91 (137)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEeCC--------cHHHHHHHHhCCC
Confidence 5566788884 5889982 3456889999954
No 16
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=26.87 E-value=50 Score=23.94 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=21.1
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|+ ++++||| +.+....|.|+|..
T Consensus 71 Lv~~mtSGPvvamvleg--------~naV~~~R~l~GpT 101 (161)
T 4fkx_A 71 LVSYFSSGPIVGMVWEG--------LGVVKGGRVLLGAT 101 (161)
T ss_dssp HHHHHTSSCEEEEEEES--------TTHHHHHHHHHCCS
T ss_pred HHHHHhCCCcEEEEEec--------cChHHHHHHHhcCC
Confidence 456678888 5778998 22455789999953
No 17
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=26.50 E-value=66 Score=23.06 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
++..++.|+ ++++|||- .+.+..|.|+|..
T Consensus 67 Lv~~mtSGPvvamvleg~--------naV~~~R~l~G~t 97 (155)
T 3r9l_A 67 LCKFLSSGPVCAMVWEGA--------NVVSISRTMMGVT 97 (155)
T ss_dssp -----CCSCCEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEeCC--------CHHHHHHHhcCCC
Confidence 445567787 67889982 2456789999954
No 18
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=26.36 E-value=82 Score=22.25 Aligned_cols=30 Identities=10% Similarity=0.467 Sum_probs=21.5
Q ss_pred HHhhccCCcE-EEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGKL-LVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Grl-v~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|++ +++|||- .+....+.|+|..
T Consensus 61 Lv~~mtSGPvva~vleg~--------~aV~~~R~l~G~t 91 (148)
T 2vu5_A 61 LVDFITSGPVFAMVWQGE--------GVVDTARNMMGKT 91 (148)
T ss_dssp HHHHHTTCCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEecc--------ChHHHHHHHhCCC
Confidence 5566788885 5789983 3456889999954
No 19
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=24.26 E-value=61 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|+ ++++||| ..+....|.|+|..
T Consensus 68 Lv~~mtSGPvvamvleg--------~naV~~~R~l~G~t 98 (155)
T 3fkb_A 68 LVSFITSGPVVAMVFEG--------KGVVASARLMIGVT 98 (155)
T ss_dssp HHHHHTSSCEEEEEEES--------TTHHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEeC--------CCHHHHHHHhcCCC
Confidence 455677888 5778998 22455789999953
No 20
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=22.96 E-value=91 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHhhccCCcE-EEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGKL-LVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Grl-v~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|++ +++|||- .+....+.|+|..
T Consensus 62 Lv~~mtSGPvva~vl~g~--------~aV~~~R~l~G~t 92 (136)
T 1k44_A 62 LLEFITSGPVVAAIVEGT--------RAIAAVRQLAGGT 92 (136)
T ss_dssp HHHHTTTSCEEEEEEEET--------THHHHHHHHHCCS
T ss_pred HHHHhccCCEEEEEEeCC--------CHHHHHHHHhCCC
Confidence 5566788885 5789982 3456888999954
No 21
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=22.44 E-value=67 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHhhccCCcE-EEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGKL-LVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Grl-v~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|++ +++|||- .+.+..+.|+|..
T Consensus 92 Lv~~mtSGPvvamvleG~--------naV~~~R~l~G~T 122 (182)
T 1w7w_A 92 LCDFLSSGPVIAMVWEGE--------GVITYGRKLIGAT 122 (182)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHHcCCCEEEEEEecc--------cHHHHHHHHhCCC
Confidence 5566788885 5889983 3456889999953
No 22
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=22.42 E-value=89 Score=22.13 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=21.5
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|+ ++++|||- .+....+.|+|..
T Consensus 62 Lv~~mtSGPvva~vl~g~--------naV~~~R~l~G~t 92 (150)
T 1nb2_A 62 LVGGATSGPVFAMVWEGL--------NAAATARQILGAT 92 (150)
T ss_dssp HHHHHTSSCCBEEEEEST--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEecC--------CHHHHHHHHhCCC
Confidence 556678888 56889983 2456889999954
No 23
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=21.26 E-value=81 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=20.7
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+.+.++.|+ ++++|||- -+-...+.|+|..
T Consensus 67 Lv~~mtSGPvva~vleg~--------~aV~~~R~l~G~t 97 (145)
T 4hr2_A 67 LVEFMISGPVMIQVLEGE--------DAILKNRDLMGAT 97 (145)
T ss_dssp HHHHHTSSCEEEEEEEEE--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEEcC--------CcHhHHhhccCCC
Confidence 455677888 56789982 2345779999953
No 24
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=20.69 E-value=85 Score=21.99 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=21.3
Q ss_pred HHhhccCCcE-EEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGKL-LVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Grl-v~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|++ +++|||- .+....+.|+|..
T Consensus 62 Lv~~mtSGPvva~vl~g~--------~aV~~~R~l~G~t 92 (142)
T 2hur_A 62 LVEFMTSGPIVVSVLEGE--------NAVQRHRDLLGAT 92 (142)
T ss_dssp HHHHHTSSCEEEEEEEEE--------THHHHHHHHHCCS
T ss_pred HHHHhcCCCEEEEEEecc--------cHHHHHHHHhCCC
Confidence 5566788885 5889982 2456889999953
No 25
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=20.62 E-value=1.2e+02 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=21.2
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+...++.|+ ++++|||- .+....+.|+|..
T Consensus 61 Lv~~mtSGPvva~vleg~--------~aV~~~R~l~G~t 91 (149)
T 1u8w_A 61 LVDYIVSGPVVAMIWEGK--------NVVLTGRKIIGAT 91 (149)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred HHhHhcCCCEEEEEEecC--------CchHHHHHHhCCC
Confidence 556678888 45789973 2456888999953
Done!