Query 032833
Match_columns 132
No_of_seqs 130 out of 861
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 10:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3c10a1 c.42.1.2 (A:515-900) H 99.6 1.7E-15 1.3E-19 124.2 6.9 75 1-75 309-386 (386)
2 d1c3pa_ c.42.1.2 (A:) HDAC hom 98.2 3.1E-07 2.3E-11 74.2 3.6 42 1-43 277-318 (372)
3 d1t64a_ c.42.1.2 (A:) Histone 97.6 2.5E-05 1.9E-09 62.7 4.1 41 2-43 275-315 (364)
4 d1iowa1 c.30.1.2 (A:1-96) D-Al 31.6 24 0.0018 21.6 3.6 27 14-40 5-33 (96)
5 d1ymka1 c.46.1.1 (A:377-550) C 21.4 8.9 0.00065 25.8 -0.1 11 12-22 127-137 (174)
6 d1c25a_ c.46.1.1 (A:) CDC25a { 20.6 9.4 0.00069 25.3 -0.1 11 13-23 127-137 (161)
7 d1k92a1 c.26.2.1 (A:1-188) Arg 19.9 12 0.00085 23.5 0.3 22 3-24 2-24 (188)
8 d1nb2a_ d.58.6.1 (A:) Nucleosi 18.9 55 0.004 21.5 3.7 31 3-41 60-91 (149)
9 d2c5sa1 c.26.2.6 (A:174-391) T 17.0 22 0.0016 23.5 1.2 17 9-25 3-19 (218)
10 d2az3a1 d.58.6.1 (A:4-155) Nuc 16.2 54 0.004 21.5 3.1 30 4-41 62-92 (152)
No 1
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=1.7e-15 Score=124.17 Aligned_cols=75 Identities=24% Similarity=0.511 Sum_probs=66.3
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCcchhh
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLAS 75 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~~~~~---~~~ps~~~~~~i~~v~~~h~~yW~~l~~ 75 (132)
|++++.++|+||++++||||||++++++|+.+++++|+|++.++... ...|+.+..+++++++++|++||+||++
T Consensus 309 ~~~~l~~~~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 386 (386)
T d3c10a1 309 MTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 386 (386)
T ss_dssp HHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred HHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHhhHhhcC
Confidence 57889999999999999999999999999999999999987554332 3578888999999999999999999963
No 2
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}
Probab=98.21 E-value=3.1e-07 Score=74.23 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred ChhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 1 MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 1 mt~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
|++++.+++ ||++++||||||+.++++|+++++.+|+|.+.+
T Consensus 277 ~~~~~~~~~-~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~ 318 (372)
T d1c3pa_ 277 AFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVP 318 (372)
T ss_dssp HHHHHHHHH-CSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHhC-CCeEEEEcCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 467777765 799999999999999999999999999997643
No 3
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.55 E-value=2.5e-05 Score=62.69 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=35.2
Q ss_pred hhHHhhccCCcEEEEecCCCCcchHHHHHHHHHHHHcCCCCC
Q 032833 2 THMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPG 43 (132)
Q Consensus 2 t~~L~~l~~Grlv~vLEGGYnl~sLa~sv~avlr~Llg~~~~ 43 (132)
++++.++ ++++++++|||||+.+++.|.+.+..+|+|.+.+
T Consensus 275 ~~~l~~~-~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~ 315 (364)
T d1t64a_ 275 LKYILQW-QLATLILGGGGYNLANTARCWTYLTGVILGKTLS 315 (364)
T ss_dssp HHHHHTT-CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhc-CCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 5566665 4699999999999999999999999999997643
No 4
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}
Probab=31.57 E-value=24 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=19.7
Q ss_pred EEEecCCCCcch--HHHHHHHHHHHHcCC
Q 032833 14 LVILEGGYNLRS--ISSSATSVIKVLLGE 40 (132)
Q Consensus 14 v~vLEGGYnl~s--La~sv~avlr~Llg~ 40 (132)
++||-|||+.+. --.|+.++.+.|...
T Consensus 5 I~vl~GG~S~E~~iSl~Sa~~v~~~L~~~ 33 (96)
T d1iowa1 5 IAVLLGGTSAEREVSLNSGAAVLAGLREG 33 (96)
T ss_dssp EEEECCCSSTTHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCcCchhhHhHHhhHHHHHHHHHHc
Confidence 678899999882 225678888888543
No 5
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.41 E-value=8.9 Score=25.83 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=9.3
Q ss_pred cEEEEecCCCC
Q 032833 12 KLLVILEGGYN 22 (132)
Q Consensus 12 rlv~vLEGGYn 22 (132)
+=|.+|+|||.
T Consensus 127 ~~VyiL~GGf~ 137 (174)
T d1ymka1 127 PEMYILKGGYK 137 (174)
T ss_dssp CCEEEETTHHH
T ss_pred ceEEEecCcHH
Confidence 35899999997
No 6
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=9.4 Score=25.31 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.4
Q ss_pred EEEEecCCCCc
Q 032833 13 LLVILEGGYNL 23 (132)
Q Consensus 13 lv~vLEGGYnl 23 (132)
=|++|+|||+-
T Consensus 127 ~V~vL~GG~~~ 137 (161)
T d1c25a_ 127 ELYVLKGGYKE 137 (161)
T ss_dssp CEEEETTHHHH
T ss_pred eEEEECCcHHH
Confidence 48999999974
No 7
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.95 E-value=12 Score=23.48 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=15.3
Q ss_pred hHHhhccCC-cEEEEecCCCCcc
Q 032833 3 HMLNALSGG-KLLVILEGGYNLR 24 (132)
Q Consensus 3 ~~L~~l~~G-rlv~vLEGGYnl~ 24 (132)
..|..+..| |+++++.||=+..
T Consensus 2 ~il~~~~~gkKv~vA~SGGvDSs 24 (188)
T d1k92a1 2 TILKHLPVGQRIGIAFSGGLDTS 24 (188)
T ss_dssp CEECSCCTTSEEEEECCSSHHHH
T ss_pred cccccCCCCCEEEEEeCCCHHHH
Confidence 345555545 8999999996643
No 8
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}
Probab=18.89 E-value=55 Score=21.45 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=20.8
Q ss_pred hHHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 3 HMLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 3 ~~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
.++..++.|+ ++++|||= + +...++.|+|..
T Consensus 60 ~lv~~mtsgP~~a~vl~g~---n-----aV~~~R~l~Gpt 91 (149)
T d1nb2a_ 60 GLVGGATSGPVFAMVWEGL---N-----AAATARQILGAT 91 (149)
T ss_dssp HHHHHHTSSCCBEEEEEST---T-----HHHHHHHHHCCS
T ss_pred chhhhcccCceEEEEeecc---h-----hHHHHHHHhCCC
Confidence 3566678888 67778872 2 334678999953
No 9
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=16.99 E-value=22 Score=23.49 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=13.6
Q ss_pred cCCcEEEEecCCCCcch
Q 032833 9 SGGKLLVILEGGYNLRS 25 (132)
Q Consensus 9 ~~Grlv~vLEGGYnl~s 25 (132)
.+||+++++.||-+...
T Consensus 3 ~~gKvvv~~SGG~DS~v 19 (218)
T d2c5sa1 3 VGGKVMVLLSGGIDSPV 19 (218)
T ss_dssp TTEEEEEECCSSSHHHH
T ss_pred CCCEEEEEecCcHHHHH
Confidence 35799999999988543
No 10
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=16.19 E-value=54 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=21.5
Q ss_pred HHhhccCCc-EEEEecCCCCcchHHHHHHHHHHHHcCCC
Q 032833 4 MLNALSGGK-LLVILEGGYNLRSISSSATSVIKVLLGEN 41 (132)
Q Consensus 4 ~L~~l~~Gr-lv~vLEGGYnl~sLa~sv~avlr~Llg~~ 41 (132)
+++.++.|+ ++++|||= .+...++.|.|..
T Consensus 62 lv~~m~sGpvvalvl~g~--------~av~~~R~l~Gpt 92 (152)
T d2az3a1 62 LVSFITSGPVFAMVWEGA--------DATRQVRQLMGAT 92 (152)
T ss_dssp HHHHHTSSCEEEEEEEST--------THHHHHHHHHCCS
T ss_pred ceeccccCCEEEEEEecC--------CHHHHHHHHhCCC
Confidence 456678888 67889992 3455778899943
Done!