RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032833
         (132 letters)



>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 73.4 bits (179), Expect = 6e-17
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 1   MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDS---APSKSGLV 57
           MT  L  L+GG +++ LEGG++L +I  ++ + +  LLG        +     P+ + + 
Sbjct: 309 MTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIR 368

Query: 58  TVLEVLKIQMNFWPSL 73
           ++  V+++   +W  +
Sbjct: 369 SLEAVIRVHSKYWGCM 384


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score = 50.3 bits (119), Expect = 8e-09
 Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1   MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPS 52
             +++  +  G+ + +  GGY+  +++ + T +   L G     +L + A  
Sbjct: 277 AFNIVREV-FGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKE 327


>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1   MTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD 48
               +        L++  GGYNL + +   T +  V+LG+    E+ D
Sbjct: 274 CLKYILQW-QLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320


>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
           {Escherichia coli [TaxId: 562]}
          Length = 213

 Score = 25.9 bits (56), Expect = 1.7
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 86  IYAAENKKKQIKKIRRADAPIW 107
           I  A +  +  ++ +R+ A +W
Sbjct: 192 IRDAASPVEAARQFKRSIAELW 213


>d1o17a2 c.27.1.1 (A:71-343) Anthranilate
          phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 273

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 47 GDSAPSKSGLVTVLEVLKIQMNFWPSLASRF 77
            +   KSG   VLE L   +   P  A   
Sbjct: 39 NRAVSGKSGSADVLEALGYNIIVPPERAKEL 69


>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 86  IYAAENKKKQIKKIRRADAPIWWKW--GRKRLLYQIIKGHLRVRSRGVN 132
           IY        I K  +    I      G+ + +     G ++    G +
Sbjct: 74  IYYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFD 122


>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus
           type 2 [TaxId: 11060]}
          Length = 136

 Score = 23.6 bits (51), Expect = 7.7
 Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 90  ENKKKQIKKIRRADAPIW--WKW 110
           E +K  +  +RR D P+W  ++ 
Sbjct: 46  EARKTFVDLMRRGDLPVWLAYRV 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,145
Number of extensions: 19292
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 8
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)