BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032835
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 17 KILLSSISAMIAETTTFPIDLTKTRLQLHGESDSLARPTNALRVAS------EIVRLQGP 70
K L + +A IA+ TFP+D K RLQ+ GES L R + + +VR +GP
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 71 LSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPTKALVGGISGVIA 128
SLY GL + R + + +RI Y++++ + G + ++ L G +G +A
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALA 118
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 16 TKILLSSISAMIAETTTFPIDLTKTRLQLHGESDSLARPTNALRVASEIVRLQGPLSLYK 75
+++L S + +A P D+ K R Q + R + + I R +G L+K
Sbjct: 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWK 165
Query: 76 GLSPAIIRHLFYTPIRIVGYENLRNLLVGDNI 107
G SP + R+ +V Y+ +++ L+ N+
Sbjct: 166 GTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 34 PIDLTKTRLQLHGESDSLARPTNALRVASEIVRLQGPLSLYKGLSPAIIRHLFYTPIRIV 93
P+D+ KTR + +L + +A A ++R +GP + YKG P+ +R + + V
Sbjct: 222 PVDVVKTRYM----NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFV 277
Query: 94 GYENLRNLLVG 104
YE L+ L+
Sbjct: 278 TYEQLKRALMA 288
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 18 ILLSSISAMIAETTTFPIDLTKTRLQLHGESDSLARPTNALRVASEIVRL---QGPLSLY 74
L ++A I++T PI+ K LQ+ S ++ + +VR+ QG LS +
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 70
Query: 75 KGLSPAIIRHLFYTPIRIVGYENLRNLLVG 104
+G +IR+ + + + + +G
Sbjct: 71 RGNLANVIRYFPTQALNFAFKDKYKQIFLG 100
>pdb|3IZB|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|J Chain J, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|J Chain J, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|Q Chain Q, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|Q Chain Q, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 143
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 42 LQLHGESDSLARPTNALRVASEIVRLQG-PLSLYKGLSPAIIRHLFYTPIRIVGYENLRN 100
+Q G+ S A ++ ++++ G P++L + P I+R Y P+ +VG + N
Sbjct: 7 VQTFGKKKS-ATAVAHVKAGKGLIKVNGSPITL---VEPEILRFKVYEPLLLVGLDKFSN 62
Query: 101 LLVGDNITGGSFSLPTKALVGGISGVIAQWHR 132
+ + +TGG A+ I+ + +H+
Sbjct: 63 IDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQ 94
>pdb|3JYV|I Chain I, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 138
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 42 LQLHGESDSLARPTNALRVASEIVRLQG-PLSLYKGLSPAIIRHLFYTPIRIVGYENLRN 100
+Q G+ S A ++ ++++ G P++L + P I+R Y P+ +VG + N
Sbjct: 2 VQTFGKKKS-ATAVAHVKAGKGLIKVNGSPITL---VEPEILRFKVYEPLLLVGLDKFSN 57
Query: 101 LLVGDNITGGSFSLPTKALVGGISGVIAQWHR 132
+ + +TGG A+ I+ + +H+
Sbjct: 58 IDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQ 89
>pdb|1S1H|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 142
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 42 LQLHGESDSLARPTNALRVASEIVRLQG-PLSLYKGLSPAIIRHLFYTPIRIVGYENLRN 100
+Q G+ S A ++ ++++ G P++L + P I+R Y P+ +VG + N
Sbjct: 6 VQTFGKKKS-ATAVAHVKAGKGLIKVNGSPITL---VEPEILRFKVYEPLLLVGLDKFSN 61
Query: 101 LLVGDNITGGSFSLPTKALVGGISGVIAQWHR 132
+ + +TGG A+ I+ + +H+
Sbjct: 62 IDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQ 93
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 30.4 bits (67), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 30.4 bits (67), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 30.4 bits (67), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 70 PLSLYKGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPT 116
PL+L LS + IRIVG EN+ + D I GS+ PT
Sbjct: 9 PLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPT 55
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 75 KGLSPAIIRHLFYTPIRIVGYENLRNLLVGDNITGGSFSLPTKAL 119
+ +S ++I LF+ +R+VG + L+ ++G SF+ P A+
Sbjct: 201 RTVSSSVIEQLFF--VRLVGKTPIETLIRDMLLSGSSFNWPYMAI 243
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 50 SLARPTNALRVASEI--VRLQGPLSLYKGLSPAIIRHLFYTPIRIVGYENL-----RNLL 102
S ++ T A V S++ +R P Y I + Y R G RNL
Sbjct: 380 SFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLS 439
Query: 103 VGDNITGGSFSLPTKALVGGISGVI 127
+ITG S SLPT + + GV+
Sbjct: 440 TSASITGLSTSLPTGSYTDVLGGVL 464
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 50 SLARPTNALRVASEI--VRLQGPLSLYKGLSPAIIRHLFYTPIRIVGYENL-----RNLL 102
S ++ T A V S++ +R P Y I + Y R G RNL
Sbjct: 374 SFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLS 433
Query: 103 VGDNITGGSFSLPTKALVGGISGVI 127
+ITG S SLPT + + GV+
Sbjct: 434 TSASITGLSTSLPTGSYTDVLGGVL 458
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 50 SLARPTNALRVASEI--VRLQGPLSLYKGLSPAIIRHLFYTPIRIVGYENL-----RNLL 102
S ++ T A V S++ +R P Y I + Y R G RNL
Sbjct: 380 SFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLS 439
Query: 103 VGDNITGGSFSLPTKALVGGISGVI 127
+ITG S SLPT + + GV+
Sbjct: 440 TSASITGLSTSLPTGSYTDVLGGVL 464
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 50 SLARPTNALRVASEI--VRLQGPLSLYKGLSPAIIRHLFYTPIRIVGYENL-----RNLL 102
S ++ T A V S++ +R P Y I + Y R G RNL
Sbjct: 380 SFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLS 439
Query: 103 VGDNITGGSFSLPTKALVGGISGVI 127
+ITG S SLPT + + GV+
Sbjct: 440 TSASITGLSTSLPTGSYTDVLGGVL 464
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 50 SLARPTNALRVASEI--VRLQGPLSLYKGLSPAIIRHLFYTPIRIVGYENL-----RNLL 102
S ++ T A V S++ +R P Y I + Y R G RNL
Sbjct: 380 SFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLS 439
Query: 103 VGDNITGGSFSLPTKALVGGISGVI 127
+ITG S SLPT + + GV+
Sbjct: 440 TSASITGLSTSLPTGSYTDVLGGVL 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,731,169
Number of Sequences: 62578
Number of extensions: 126868
Number of successful extensions: 238
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 23
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)