BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032836
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TL19|GUC2G_MOUSE Guanylate cyclase 2G OS=Mus musculus GN=Gucy2g PE=1 SV=1
Length = 1100
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSS----VLLGGGIKLHDSSTISKKAQLS 56
M YC L ++ S SSSL L H + S +L GG L TIS K +
Sbjct: 1014 MPRYC---LFGDTVNMASRMESSSLPLRIHVSQSTAGALLAAGGYHLQKRGTISVKGKGE 1070
Query: 57 PLSFSASFRNHICRAAEYKFPDPIPEFADSETQ 89
+F ++ FP P+PEF + E +
Sbjct: 1071 QTTFWLKGKD--------GFPVPLPEFTEEEAK 1095
>sp|A1UR20|RIMM_BARBK Ribosome maturation factor RimM OS=Bartonella bacilliformis (strain
ATCC 35685 / KC583) GN=rimM PE=3 SV=1
Length = 191
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 1 MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLG--------GGIKLHDSSTISKK 52
+ Y R + LD + + L + N++ LLG G L + IS K
Sbjct: 84 VQLYIERDQFADDLDTDEFYQIDLIGLRVYDNTNQLLGEVSGFFNFGAGDLLEVRLISHK 143
Query: 53 AQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAK 101
+L P FS + IC A+ + DP+ S+ F LN L K
Sbjct: 144 TELIP--FSKAAVPEICVASGFLVVDPVAAGLFSDPHSFNDLALNDLEK 190
>sp|O97758|ZO1_CANFA Tight junction protein ZO-1 OS=Canis familiaris GN=TJP1 PE=1 SV=1
Length = 1769
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 11 SSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKK-----AQLSPLSFSASFR 65
S P P +SSSL L H + G I L +++ K +Q P +F R
Sbjct: 1432 SQYAQPSQPGTSSSLALHTHAKGAHGEGNSISLDFQNSLVSKPDPPPSQNKPATFRPPNR 1491
Query: 66 NHICRAAEY---KFPDPIPEFADSETQKFRTHLLNKLAKK 102
++ Y FPD P +TQK T N+ K
Sbjct: 1492 EDTVQSTFYPQKSFPDKAPVNGAEQTQKTVTPAYNRFTPK 1531
>sp|Q2H0X9|MCD4_CHAGB GPI ethanolamine phosphate transferase 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=MCD4 PE=3 SV=1
Length = 921
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 9 LISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHI 68
L+ + +DP + SSS+LR R V L G+ D S ++ +L+P++F + F N
Sbjct: 18 LVKASVDPTTRRSSSALR----RPGHVALIAGL-YEDVSAVTTGWKLNPVNFDSVF-NRS 71
Query: 69 CRAAEYKFPDPIPEF 83
+ PD +P F
Sbjct: 72 RHTWSWGSPDILPMF 86
>sp|B0BQZ1|F16PA_ACTPJ Fructose-1,6-bisphosphatase class 1 OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=fbp PE=3
SV=1
Length = 334
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 16/68 (23%)
Query: 4 YCNRSLISSKLDPCSPFSS---SSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQL----- 55
YC S ++K P+SS SL FHRN LL GGI ++ +ST+ K +L
Sbjct: 226 YCQESDEATK----RPYSSRYIGSLVSDFHRN---LLKGGIYIYPTSTVYPKGKLRLLYE 278
Query: 56 -SPLSFSA 62
+P++F A
Sbjct: 279 GNPMAFLA 286
>sp|B3H282|F16PA_ACTP7 Fructose-1,6-bisphosphatase class 1 OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=fbp PE=3
SV=1
Length = 334
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 16/68 (23%)
Query: 4 YCNRSLISSKLDPCSPFSS---SSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQL----- 55
YC S ++K P+SS SL FHRN LL GGI ++ +ST+ K +L
Sbjct: 226 YCQESDEATK----RPYSSRYIGSLVSDFHRN---LLKGGIYIYPTSTVYPKGKLRLLYE 278
Query: 56 -SPLSFSA 62
+P++F A
Sbjct: 279 GNPMAFLA 286
>sp|A3N298|F16PA_ACTP2 Fructose-1,6-bisphosphatase class 1 OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=fbp PE=3
SV=1
Length = 334
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 16/68 (23%)
Query: 4 YCNRSLISSKLDPCSPFSS---SSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQL----- 55
YC S ++K P+SS SL FHRN LL GGI ++ +ST+ K +L
Sbjct: 226 YCQESDEATK----RPYSSRYIGSLVSDFHRN---LLKGGIYIYPTSTVYPKGKLRLLYE 278
Query: 56 -SPLSFSA 62
+P++F A
Sbjct: 279 GNPMAFLA 286
>sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 OS=Homo sapiens GN=TJP1 PE=1 SV=3
Length = 1748
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 11 SSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKK-----AQLSPLSFSASFR 65
S P P +S+SL + H + G + L +++ K +Q P +F R
Sbjct: 1433 SQYAQPSQPVTSASLHI--HSKGAHGEGNSVSLDFQNSLVSKPDPPPSQNKPATFRPPNR 1490
Query: 66 NHICRAAEY---KFPDPIPEFADSETQKFRTHLLNKLAKK 102
+AA Y FPD P +TQK T N+ K
Sbjct: 1491 EDTAQAAFYPQKSFPDKAPVNGTEQTQKTVTPAYNRFTPK 1530
>sp|Q5W0B1|RN219_HUMAN RING finger protein 219 OS=Homo sapiens GN=RNF219 PE=1 SV=1
Length = 726
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 16 PCSPFSSSSLRLAF--HRNSSVLLGGGIKLH 44
PC+P S S L+L+ +R SSV+ GG K H
Sbjct: 389 PCTPLSLSCLQLSTPENRESSVVQAGGSKKH 419
>sp|Q9GKK4|GALK1_CANFA Galactokinase OS=Canis familiaris GN=GALK1 PE=2 SV=1
Length = 392
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 33 SSVLLGGGIKLHDS---STISKKAQLSPLSFSASFRNHICRAAEYKF 76
SSV LGGG+ S +T + QL P S S + R +C+ AE+ F
Sbjct: 131 SSVPLGGGLSSSASLEVATYTFLQQLCPDSGSVAARAQVCQQAEHSF 177
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1
Length = 1535
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 30 HRNSSVLLGG----GIKLHDSSTISK-KAQLSPLSFSASF---RNHICRAAEYKFPDPIP 81
HR S V++ G G K+ S ++ K +A+L L A + H C A K P
Sbjct: 930 HRGSLVIMQGLLVMGAKIASSPSVDKARAELQELLTIAERWEEKAHFCLEARQKHPPATL 989
Query: 82 EFADSETQKFRTHLLNKLAKKD 103
E ET+ HL N A K+
Sbjct: 990 EAIIRETENIPVHLPNIQALKE 1011
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,866,743
Number of Sequences: 539616
Number of extensions: 1524573
Number of successful extensions: 4633
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4632
Number of HSP's gapped (non-prelim): 18
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)