Query 032836
Match_columns 132
No_of_seqs 18 out of 20
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 06:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2137 OraA Uncharacterized p 66.5 7.5 0.00016 30.5 3.3 31 88-118 33-63 (174)
2 PF14615 Rsa3: Ribosome-assemb 64.7 3.2 7E-05 26.9 0.8 22 90-113 1-22 (47)
3 PF09803 DUF2346: Uncharacteri 49.0 19 0.00042 25.3 2.6 36 64-100 31-66 (80)
4 PF07131 DUF1382: Protein of u 44.5 23 0.0005 24.7 2.4 23 79-101 28-50 (61)
5 PF13010 pRN1_helical: Primase 42.2 18 0.00039 28.5 1.8 31 85-119 10-42 (135)
6 PF13348 Y_phosphatase3C: Tyro 40.4 14 0.00029 23.4 0.7 38 94-131 1-45 (68)
7 PRK14136 recX recombination re 36.1 32 0.0007 29.8 2.6 27 92-118 179-205 (309)
8 PF00351 Biopterin_H: Biopteri 34.9 33 0.00071 30.0 2.5 29 71-100 47-77 (332)
9 cd05140 Barstar_AU1054-like Ba 31.8 48 0.001 23.0 2.5 27 91-117 14-40 (86)
10 KOG0986 G protein-coupled rece 30.8 34 0.00074 32.3 2.0 53 73-129 111-168 (591)
11 PF02338 OTU: OTU-like cystein 30.3 61 0.0013 21.6 2.7 33 86-120 40-73 (121)
12 PF03385 DUF288: Protein of un 29.7 19 0.00041 32.4 0.2 42 64-118 131-175 (390)
13 PF06570 DUF1129: Protein of u 29.2 69 0.0015 24.5 3.2 28 84-112 23-58 (206)
14 PRK14137 recX recombination re 27.9 65 0.0014 25.4 2.9 28 91-118 56-83 (195)
15 KOG3820 Aromatic amino acid hy 26.9 1E+02 0.0022 28.4 4.3 21 73-93 173-195 (461)
16 cd05143 Barstar_SaI14_like Bar 26.8 81 0.0018 22.4 2.9 31 88-118 11-42 (88)
17 PHA03043 hypothetical protein; 26.4 60 0.0013 25.3 2.4 34 96-129 70-103 (130)
18 COG1105 FruK Fructose-1-phosph 26.2 58 0.0013 27.9 2.5 46 73-118 101-157 (310)
19 PHA01513 mnt Mnt 25.4 44 0.00095 24.1 1.4 29 73-101 49-77 (82)
20 cd05141 Barstar_evA4336-like B 25.0 92 0.002 20.8 2.8 30 90-119 13-42 (81)
21 cd00489 Barstar_like Barstar i 25.0 91 0.002 21.4 2.9 31 89-119 12-42 (85)
22 PLN02294 cytochrome c oxidase 24.4 59 0.0013 26.4 2.1 30 73-106 63-92 (174)
23 PF01337 Barstar: Barstar (bar 24.1 1.2E+02 0.0026 19.9 3.3 30 89-118 12-41 (90)
24 PF13618 Gluconate_2-dh3: Gluc 22.8 1E+02 0.0023 21.2 2.9 38 92-131 76-122 (131)
25 PRK07668 hypothetical protein; 22.1 1E+02 0.0022 25.7 3.1 28 85-112 24-59 (254)
26 cd05142 Barstar Barstar is an 22.1 1.1E+02 0.0023 21.3 2.8 29 89-117 13-41 (87)
27 KOG3046 Transcription factor, 22.0 95 0.0021 24.8 2.8 24 89-114 112-135 (147)
28 COG1874 LacA Beta-galactosidas 21.6 78 0.0017 29.9 2.6 45 84-129 134-184 (673)
29 KOG1213 Sister chromatid cohes 20.7 59 0.0013 30.3 1.6 22 93-114 21-42 (614)
30 cd08320 Pyrin_NALPs Pyrin deat 20.6 1.7E+02 0.0036 20.3 3.5 17 82-98 9-25 (86)
31 PF08167 RIX1: rRNA processing 20.5 1.7E+02 0.0036 21.7 3.7 37 84-120 19-61 (165)
32 PF15546 DUF4653: Domain of un 20.2 1.3E+02 0.0027 25.7 3.3 27 19-45 123-150 (239)
No 1
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=66.48 E-value=7.5 Score=30.46 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 88 TQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 88 TeKFr~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
...++.+|-.||.++.+--+-+|+|++.|++
T Consensus 33 R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~ 63 (174)
T COG2137 33 RDRSEKELRRKLAKKEFSEEIIEEVIDRLAE 63 (174)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999999988
No 2
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=64.67 E-value=3.2 Score=26.88 Aligned_cols=22 Identities=41% Similarity=0.848 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhcccccchHHHH
Q 032836 90 KFRTHLLNKLAKKDMFGDSLEDVV 113 (132)
Q Consensus 90 KFr~hLl~KLskkD~FGd~leeVV 113 (132)
+|+..-|+++. +.|||+|+++-
T Consensus 1 ~f~~~yl~~~t--~efgdDLd~lR 22 (47)
T PF14615_consen 1 EFRNFYLQRLT--DEFGDDLDELR 22 (47)
T ss_pred ChHHHHHHHHH--HHHHHHHHHHh
Confidence 36666666654 56888887763
No 3
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=48.99 E-value=19 Score=25.27 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred ccchhhhcccccCCCCCchhhHHHHHHHHHHHHHHhh
Q 032836 64 FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLA 100 (132)
Q Consensus 64 ~~~~v~r~a~ykfPDPIPEFAe~ETeKFr~hLl~KLs 100 (132)
+.++|..+..+.||..-|+ ...|.++|++++.+|-.
T Consensus 31 f~~~v~~~~~~~~ppe~~~-~~~ele~~~~~~~~k~~ 66 (80)
T PF09803_consen 31 FEKWVIKRKRELYPPENEE-IREELEEFKEELRKKRE 66 (80)
T ss_pred HHHHhHHHhcccCCCCCcc-cHHHHHHHHHHHHHHHH
Confidence 3467777778888888887 67899999999877654
No 4
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.47 E-value=23 Score=24.73 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhh
Q 032836 79 PIPEFADSETQKFRTHLLNKLAK 101 (132)
Q Consensus 79 PIPEFAe~ETeKFr~hLl~KLsk 101 (132)
|||=-+|.|-+-|-.++.+||+.
T Consensus 28 piPv~~dee~~~L~s~~~~kLe~ 50 (61)
T PF07131_consen 28 PIPVVTDEEFHTLSSQLSQKLER 50 (61)
T ss_pred ccccccHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999984
No 5
>PF13010 pRN1_helical: Primase helical domain; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=42.21 E-value=18 Score=28.48 Aligned_cols=31 Identities=23% Similarity=0.635 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhhccc-ccchHHHH-HHHHHH
Q 032836 85 DSETQKFRTHLLNKLAKKDMF-GDSLEDVV-GICTEV 119 (132)
Q Consensus 85 e~ETeKFr~hLl~KLskkD~F-Gd~leeVV-~VCtEI 119 (132)
+.|-||+|++|. |.|-| |-.||+|- .||.+|
T Consensus 10 ~~~~ekLkeEm~----KydrfkGKtveair~evC~~~ 42 (135)
T PF13010_consen 10 EEDFEKLKEEMA----KYDRFKGKTVEAIREEVCKKI 42 (135)
T ss_dssp -----HHHHHHH----HH-------HHHHHHHHHTS-
T ss_pred HHHHHHHHHHHH----HhccccCchHHHHHHHHHHhc
Confidence 345567777765 45888 99999996 588765
No 6
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=40.36 E-value=14 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=12.9
Q ss_pred HHHHHhhh----hcccccchHHHHHHHHHHHHHHh---hhccCCC
Q 032836 94 HLLNKLAK----KDMFGDSLEDVVGICTEVMLSFT---LSNFFFP 131 (132)
Q Consensus 94 hLl~KLsk----kD~FGd~leeVV~VCtEIfs~FL---h~eYgGP 131 (132)
||+.+|.. .|..-+.+..+.+|-.|-+..+| ..+|||+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~l~~~l~~i~~~yGs~ 45 (68)
T PF13348_consen 1 QLLARLARKRGADDDARENLRSLMSVRPEYLEAALDAIDERYGSV 45 (68)
T ss_dssp ---------------------HHHS--HHHHHHHHHHHHHHHSSH
T ss_pred CcccccchhhhhhhhhhhhhhhhcCccHHHHHHHHHHHHHHcCCH
Confidence 56666643 24444555567777777666554 5678874
No 7
>PRK14136 recX recombination regulator RecX; Provisional
Probab=36.14 E-value=32 Score=29.81 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 92 RTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 92 r~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.||.+||.++.+=.+.+++||+-|.|
T Consensus 179 e~ELr~KL~kkG~~ee~IE~VIerLke 205 (309)
T PRK14136 179 RAELARKLAPYADESDSVEPLLDALER 205 (309)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457889999988888999999999987
No 8
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=34.90 E-value=33 Score=30.03 Aligned_cols=29 Identities=38% Similarity=0.693 Sum_probs=18.2
Q ss_pred cccccCCCCCchh--hHHHHHHHHHHHHHHhh
Q 032836 71 AAEYKFPDPIPEF--ADSETQKFRTHLLNKLA 100 (132)
Q Consensus 71 ~a~ykfPDPIPEF--Ae~ETeKFr~hLl~KLs 100 (132)
|.+||+.||||.. .+.|.+-.|. +.+||.
T Consensus 47 A~~~k~g~pip~v~YT~eE~~tW~~-v~~rl~ 77 (332)
T PF00351_consen 47 AFNYKHGDPIPRVEYTEEEHATWRT-VYRRLM 77 (332)
T ss_dssp HHH--TTSTTSGGG--HHHHHHHHH-HHHHHH
T ss_pred HHhccccCCCCcccCCHHHHHHHHH-HHHHHH
Confidence 3499999999964 5777776665 555555
No 9
>cd05140 Barstar_AU1054-like Barstar_AU1054-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor AU1054 found in Burkholderia cenocepacia. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=31.78 E-value=48 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHH
Q 032836 91 FRTHLLNKLAKKDMFGDSLEDVVGICT 117 (132)
Q Consensus 91 Fr~hLl~KLskkD~FGd~leeVV~VCt 117 (132)
|-..|.++|.=-|+||..+|+.-|.=|
T Consensus 14 l~~~l~~~l~fP~~fG~N~DAl~D~lt 40 (86)
T cd05140 14 LHELLKECLGFPGWYGCNWDAFWDAIT 40 (86)
T ss_pred HHHHHHHHcCCchhhcCCHHHHHHHHc
Confidence 444444444445999999999988644
No 10
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=30.75 E-value=34 Score=32.27 Aligned_cols=53 Identities=25% Similarity=0.505 Sum_probs=42.5
Q ss_pred cccCCCCCchhh-HHHHHHHHHHHHHHhhhhcccccchHHHHHHHH----HHHHHHhhhccC
Q 032836 73 EYKFPDPIPEFA-DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICT----EVMLSFTLSNFF 129 (132)
Q Consensus 73 ~ykfPDPIPEFA-e~ETeKFr~hLl~KLskkD~FGd~leeVV~VCt----EIfs~FLh~eYg 129 (132)
...-|..+|++- +.=.++++.|+.++ -.+|.|-.-+.++ |+ ++|.+|+.+.|.
T Consensus 111 ~~~~~~~~~~~s~~~~v~~~~~~l~~~-~~~~lf~~~~~~~---~~~L~~~pF~~f~~S~yf 168 (591)
T KOG0986|consen 111 MKELLACLPQFSSKDLVTHVQEHLLEK-PPKDLFQPLARAI---CAYLRGDPFQEFLESDYF 168 (591)
T ss_pred hccccccCCCcchhhhhHHHhhhcccc-CchhhhHHHHHHH---HHHhccchHhHhHHHHHH
Confidence 455678889987 77788999999998 6689998877766 65 489999998874
No 11
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=30.30 E-value=61 Score=21.61 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHH-hhhhcccccchHHHHHHHHHHH
Q 032836 86 SETQKFRTHLLNK-LAKKDMFGDSLEDVVGICTEVM 120 (132)
Q Consensus 86 ~ETeKFr~hLl~K-LskkD~FGd~leeVV~VCtEIf 120 (132)
..-++|+..+... +++...+|+++|- .+++.+|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~Wg~~~el--~a~a~~~ 73 (121)
T PF02338_consen 40 KNRDKFEEFLEGDKMSKPGTWGGEIEL--QALANVL 73 (121)
T ss_dssp HTTTHHHHHHHHHHHTSTTSHEEHHHH--HHHHHHH
T ss_pred hccchhhhhhhhhhhccccccCcHHHH--HHHHHHh
Confidence 3344555555554 8888899998873 5555555
No 12
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=29.73 E-value=19 Score=32.37 Aligned_cols=42 Identities=33% Similarity=0.639 Sum_probs=28.1
Q ss_pred ccchhhhcccccCC--CCCchhhHHHHHHHHHHHHHHhhhh-cccccchHHHHHHHHH
Q 032836 64 FRNHICRAAEYKFP--DPIPEFADSETQKFRTHLLNKLAKK-DMFGDSLEDVVGICTE 118 (132)
Q Consensus 64 ~~~~v~r~a~ykfP--DPIPEFAe~ETeKFr~hLl~KLskk-D~FGd~leeVV~VCtE 118 (132)
.+++-|||..-.|- ||.-+- .+-.+|..|| ++||| +|+-|.|
T Consensus 131 ~R~vNCRRm~leF~lvdp~~~~---------~~~~~ra~qKlnyFGD----l~~WC~e 175 (390)
T PF03385_consen 131 SRDVNCRRMHLEFELVDPKKEE---------SQNIKRAEQKLNYFGD----LVDWCNE 175 (390)
T ss_pred ccccccccccceeeccCCcccc---------cHHHHHHHHHHHhhch----HHHHHhc
Confidence 46789999966554 454321 2334566664 99997 7888987
No 13
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.23 E-value=69 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.495 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhh--------hcccccchHHH
Q 032836 84 ADSETQKFRTHLLNKLAK--------KDMFGDSLEDV 112 (132)
Q Consensus 84 Ae~ETeKFr~hLl~KLsk--------kD~FGd~leeV 112 (132)
.|+|.|..-.+|+..|=+ +|+|| +..|-
T Consensus 23 ~e~~~e~~L~eil~~LleaQk~G~tA~~lfG-~P~~~ 58 (206)
T PF06570_consen 23 SEEEIEELLEEILPHLLEAQKKGKTARQLFG-DPKEY 58 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcHHHHcC-CHHHH
Confidence 578999999999999862 39999 77653
No 14
>PRK14137 recX recombination regulator RecX; Provisional
Probab=27.93 E-value=65 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 91 FRTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 91 Fr~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
-..+|-+||.++++=-+.+++||+-|.|
T Consensus 56 S~~ELr~KL~~kg~~~e~Ie~vI~rL~e 83 (195)
T PRK14137 56 TAAELRAKLERRSEDEALVTEVLERVQE 83 (195)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3567888999988888999999999987
No 15
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=26.87 E-value=1e+02 Score=28.43 Aligned_cols=21 Identities=43% Similarity=0.888 Sum_probs=17.0
Q ss_pred cccCCCCCc--hhhHHHHHHHHH
Q 032836 73 EYKFPDPIP--EFADSETQKFRT 93 (132)
Q Consensus 73 ~ykfPDPIP--EFAe~ETeKFr~ 93 (132)
+||+-|||| |+.+.|..-.++
T Consensus 173 nyKhGdpIP~veYT~eEikTWg~ 195 (461)
T KOG3820|consen 173 NYKHGDPIPRVEYTEEEIKTWGT 195 (461)
T ss_pred hcccCCCCCccccCHHHHHHHHH
Confidence 999999999 677777766654
No 16
>cd05143 Barstar_SaI14_like Barstar_SaI14_like contains sequences that are similar to SaI14, an RNAase inhibitor, which are members of the Barstar family. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. The sequences in this subfamily are mostly uncharacterized, but believed to have a similar function and role.
Probab=26.79 E-value=81 Score=22.44 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhh-cccccchHHHHHHHHH
Q 032836 88 TQKFRTHLLNKLAKK-DMFGDSLEDVVGICTE 118 (132)
Q Consensus 88 TeKFr~hLl~KLskk-D~FGd~leeVV~VCtE 118 (132)
.+.|-.++-+.|.-. ++||..+|++.|+=|-
T Consensus 11 ~~~f~~~l~~~l~~p~~~fG~NlDAL~D~Ltg 42 (88)
T cd05143 11 LADFFCEIGEAINGEGGYFGPNLDALADCLRG 42 (88)
T ss_pred HHHHHHHHHHHHCCCccccCCCHHHHHHHhcc
Confidence 356777888888766 9999999999987543
No 17
>PHA03043 hypothetical protein; Provisional
Probab=26.36 E-value=60 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.0
Q ss_pred HHHhhhhcccccchHHHHHHHHHHHHHHhhhccC
Q 032836 96 LNKLAKKDMFGDSLEDVVGICTEVMLSFTLSNFF 129 (132)
Q Consensus 96 l~KLskkD~FGd~leeVV~VCtEIfs~FLh~eYg 129 (132)
++||-+++.-|-+.+|++|.|+=+-....|..|.
T Consensus 70 l~k~~~~~~~~~~~~E~IGLcaiv~E~~~~~~~~ 103 (130)
T PHA03043 70 LDKLPTNLLDGLNAEEIIGLCGILAEKVVHSTYT 103 (130)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHHHhcccc
Confidence 4555555678899999999999998888877663
No 18
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.23 E-value=58 Score=27.91 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=38.1
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHhhhhccc---c--------cchHHHHHHHHH
Q 032836 73 EYKFPDPIPEFADSETQKFRTHLLNKLAKKDMF---G--------DSLEDVVGICTE 118 (132)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hLl~KLskkD~F---G--------d~leeVV~VCtE 118 (132)
++.+.+|=|+..++|-+-|.+++.+.|.+.|+. | |...+++.+|-+
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~ 157 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQ 157 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999999999989888743 2 455667777755
No 19
>PHA01513 mnt Mnt
Probab=25.40 E-value=44 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.2
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHhhh
Q 032836 73 EYKFPDPIPEFADSETQKFRTHLLNKLAK 101 (132)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hLl~KLsk 101 (132)
.+.|-|-.-.||+++.+|||+-++.-|.+
T Consensus 49 ~~g~~~~~~~~a~~~~~~~~~~~~~~l~~ 77 (82)
T PHA01513 49 VTGYRDDAERLADEQSELVKKMVFDTLKD 77 (82)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999999887753
No 20
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=25.03 E-value=92 Score=20.81 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhhcccccchHHHHHHHHHH
Q 032836 90 KFRTHLLNKLAKKDMFGDSLEDVVGICTEV 119 (132)
Q Consensus 90 KFr~hLl~KLskkD~FGd~leeVV~VCtEI 119 (132)
.|-..|-++|.--++||..+|+..|.=+..
T Consensus 13 ~~~~~l~~~l~fP~yfG~NlDAl~DcL~d~ 42 (81)
T cd05141 13 ALLDALAAALDFPSWFGHNWDALADCLTDL 42 (81)
T ss_pred HHHHHHHHHcCCCccccCCHHHHHHHHcCc
Confidence 455566666655699999999999875544
No 21
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=25.02 E-value=91 Score=21.42 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICTEV 119 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~VCtEI 119 (132)
+.|-..|.++|.--|+||..+|+..|+=+.+
T Consensus 12 ~~f~~~~~~~l~fp~~fG~NlDAl~D~L~~~ 42 (85)
T cd00489 12 EDFHARLKKKLGFPDYYGHNLDALWDCLTGL 42 (85)
T ss_pred HHHHHHHHHHhCCccccCCCHHHHHHHHcCC
Confidence 3455666666655799999999998875543
No 22
>PLN02294 cytochrome c oxidase subunit Vb
Probab=24.42 E-value=59 Score=26.42 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=24.7
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHhhhhcccc
Q 032836 73 EYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFG 106 (132)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hLl~KLskkD~FG 106 (132)
+=+.+||+| +.|---|.||+.||.-+|.|-
T Consensus 63 ~~~~~d~~~----~ATGLER~ELla~leG~D~Fd 92 (174)
T PLN02294 63 KKRVEDVMP----IATGHEREELEAELEGRKLLD 92 (174)
T ss_pred cccCCCchh----hccchHHHHHHHHHcCCCccc
Confidence 556788876 778888999999999888884
No 23
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=24.07 E-value=1.2e+02 Score=19.92 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.|-..|.++|.=-|+||..+++.-|.=+.
T Consensus 12 ~~~~~~l~~~l~fP~yfG~NlDAl~D~L~d 41 (90)
T PF01337_consen 12 EDFYDALAEALDFPDYFGRNLDALWDCLTD 41 (90)
T ss_dssp HHHHHHHHHHTT--TTSSSSHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCchhcCCHHHHHHHhcC
Confidence 345566667775579999999999886443
No 24
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=22.83 E-value=1e+02 Score=21.25 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhcc-----cc----cchHHHHHHHHHHHHHHhhhccCCC
Q 032836 92 RTHLLNKLAKKDM-----FG----DSLEDVVGICTEVMLSFTLSNFFFP 131 (132)
Q Consensus 92 r~hLl~KLskkD~-----FG----d~leeVV~VCtEIfs~FLh~eYgGP 131 (132)
|..||+++++.+. -+ .=...|.... +.+-|-+.+||||
T Consensus 76 ~~~lL~~~~~~~~~~~~~~~~~~~~ff~~lr~~~--~~gyyt~p~ygG~ 122 (131)
T PF13618_consen 76 REALLDALEKSEAAGPDWDGIPGARFFQQLRNLT--LQGYYTSPEYGGN 122 (131)
T ss_pred HHHHHHHHHhccccccccccCcHHHHHHHHHHHH--HHHHhcCCccccC
Confidence 4677777775332 00 1123333333 3444556678886
No 25
>PRK07668 hypothetical protein; Validated
Probab=22.11 E-value=1e+02 Score=25.69 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhh--------hcccccchHHH
Q 032836 85 DSETQKFRTHLLNKLAK--------KDMFGDSLEDV 112 (132)
Q Consensus 85 e~ETeKFr~hLl~KLsk--------kD~FGd~leeV 112 (132)
|+|.|++-.+++..|-. +|+||++..+.
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~y 59 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEY 59 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHH
Confidence 77888887777776651 48999877664
No 26
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=22.09 E-value=1.1e+02 Score=21.26 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICT 117 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~VCt 117 (132)
+.|-..|-++|.=.++||..+|+.-|+=|
T Consensus 13 ~~f~~~l~~~~~~p~~~G~NlDAl~D~Lt 41 (87)
T cd05142 13 EDLHQILKKELALPEYYGENLDALWDCLT 41 (87)
T ss_pred HHHHHHHHHHhCCchhcCCCHHHHHHHHc
Confidence 34556666666557999999999988654
No 27
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=21.97 E-value=95 Score=24.80 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVG 114 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~ 114 (132)
.|||.||+++|++ .|-|.++-+-+
T Consensus 112 K~fr~~l~eEl~q--~fPe~~~~yr~ 135 (147)
T KOG3046|consen 112 KKFRKHLAEELSQ--EFPELVDPYRS 135 (147)
T ss_pred HHHHHHHHHHHHH--HChHHHHHHHH
Confidence 6899999998875 45544444433
No 28
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.59 E-value=78 Score=29.89 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHhh-----h-hcccccchHHHHHHHHHHHHHHhhhccC
Q 032836 84 ADSETQKFRTHLLNKLA-----K-KDMFGDSLEDVVGICTEVMLSFTLSNFF 129 (132)
Q Consensus 84 Ae~ETeKFr~hLl~KLs-----k-kD~FGd~leeVV~VCtEIfs~FLh~eYg 129 (132)
++.=+++-|+|+...+- | .++||.+ +.-++-|..+|-.+|.+.||
T Consensus 134 ~~~i~~~irer~~~~~~~v~~w~~dneY~~~-~~~~~~~~~~f~~wLk~~yg 184 (673)
T COG1874 134 LDRILQQIRERLYGNGPAVITWQNDNEYGGH-PCYCDYCQAAFRLWLKKGYG 184 (673)
T ss_pred HHHHHHHHHHHHhccCCceeEEEccCccCCc-cccccccHHHHHHHHHhCcc
Confidence 33334446666433222 3 4799998 99999999999999999998
No 29
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.71 E-value=59 Score=30.26 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=18.5
Q ss_pred HHHHHHhhhhcccccchHHHHH
Q 032836 93 THLLNKLAKKDMFGDSLEDVVG 114 (132)
Q Consensus 93 ~hLl~KLskkD~FGd~leeVV~ 114 (132)
.|+.+||+|+++|--|+++.|+
T Consensus 21 Ah~~kKL~K~qv~~tdI~~sve 42 (614)
T KOG1213|consen 21 AHWEKKLSKAQVFETDIPQSVE 42 (614)
T ss_pred hHHhhhcchhheeeccHHHHHH
Confidence 5889999999999988876553
No 30
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=20.63 E-value=1.7e+02 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 032836 82 EFADSETQKFRTHLLNK 98 (132)
Q Consensus 82 EFAe~ETeKFr~hLl~K 98 (132)
+.-+.|-+|||..|...
T Consensus 9 ~L~~~ElkkFK~~L~~~ 25 (86)
T cd08320 9 ELSKEELKKFKLLLKTE 25 (86)
T ss_pred HcCHHHHHHHHHHHhcc
Confidence 45577899999998874
No 31
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.48 E-value=1.7e+02 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccc-----hHHHHHHH-HHHH
Q 032836 84 ADSETQKFRTHLLNKLAKKDMFGDS-----LEDVVGIC-TEVM 120 (132)
Q Consensus 84 Ae~ETeKFr~hLl~KLskkD~FGd~-----leeVV~VC-tEIf 120 (132)
+..+..|+++++.+-|..++-.+-- +..+|+.| .|+|
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l 61 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEIL 61 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHH
Confidence 7889999999999999976655432 46778888 7887
No 32
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=20.21 E-value=1.3e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=17.6
Q ss_pred CCcccceeee-eccCCCcccCcceeecc
Q 032836 19 PFSSSSLRLA-FHRNSSVLLGGGIKLHD 45 (132)
Q Consensus 19 ~~ssS~lrla-f~~~sS~~~~t~~~lh~ 45 (132)
.|.||+|-+- +..++-+.+.|+...++
T Consensus 123 gYaSsSlSidS~~ssp~~~~~~~~~p~p 150 (239)
T PF15546_consen 123 GYASSSLSIDSPSSSPESACGTPWGPGP 150 (239)
T ss_pred cccccccccCCCCCCCCCcCCCCCCCCC
Confidence 5888887765 55555667888774333
Done!