Query 032836
Match_columns 132
No_of_seqs 18 out of 20
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 10:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfg_A Xcrecx, regulatory prot 39.5 20 0.00068 25.5 2.7 27 92-118 34-60 (162)
2 3e3v_A Regulatory protein RECX 35.2 21 0.00071 25.8 2.2 27 92-118 35-61 (177)
3 3d5l_A Regulatory protein RECX 34.2 26 0.00088 26.1 2.7 27 92-118 78-104 (221)
4 3c1d_A Protein ORAA, regulator 30.1 32 0.0011 24.2 2.5 27 92-118 22-58 (159)
5 4dhx_A Protein GANP, 80 kDa MC 28.8 26 0.00089 24.2 1.7 14 114-127 51-64 (75)
6 3im4_C Dual specificity A kina 27.4 19 0.00066 22.9 0.8 22 80-101 2-23 (45)
7 2af0_A Regulator of G-protein 27.4 53 0.0018 22.0 3.1 27 104-130 22-50 (146)
8 2bv1_A Regulator of G-protein 26.9 55 0.0019 22.0 3.1 26 105-130 22-49 (145)
9 2i39_A Protein N1, N1L protein 25.6 50 0.0017 24.9 2.9 33 95-128 75-107 (137)
10 1j8u_A Phenylalanine-4-hydroxy 25.3 35 0.0012 28.6 2.3 45 71-116 63-115 (325)
11 1phz_A Protein (phenylalanine 25.3 39 0.0013 29.0 2.5 28 72-100 166-195 (429)
12 1mnt_A MNT repressor; transcri 24.8 15 0.00051 24.1 -0.1 25 76-100 51-75 (76)
13 2ihd_A RGS8, regulator of G-pr 24.6 54 0.0019 22.6 2.8 27 104-130 34-62 (155)
14 1fqi_A RGS9, regulator of G-pr 24.0 58 0.002 22.0 2.8 26 105-130 21-48 (147)
15 2lxl_A Vacuolar protein sortin 23.9 34 0.0012 25.7 1.8 24 85-108 53-77 (183)
16 1toh_A Tyroh, tyrosine hydroxy 23.2 41 0.0014 28.4 2.3 30 70-100 55-86 (343)
17 2cx6_A Hypothetical protein YH 21.7 79 0.0027 20.7 3.0 29 89-117 15-43 (90)
18 2crp_A RGS5, regulator of G-pr 21.1 57 0.002 22.1 2.3 22 108-129 28-51 (150)
19 2za4_B Barstar; protein-protei 20.4 89 0.003 20.1 3.0 30 89-118 15-44 (90)
No 1
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.53 E-value=20 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 92 RTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 92 r~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.+|-+||.++++=.+.+++||+-|.|
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~~ 60 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLAG 60 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457889999998888999999999966
No 2
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=35.22 E-value=21 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 92 RTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 92 r~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.+|-+||.++++=.+.+++||+-|.|
T Consensus 35 ~~EL~~KL~~kg~~~~~ie~vl~~L~~ 61 (177)
T 3e3v_A 35 RKEVEDKLRSLDIHEDYISEIINKLID 61 (177)
T ss_dssp HHHHHTTSGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457888998888778899999999976
No 3
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=34.24 E-value=26 Score=26.12 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 92 RTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 92 r~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.+|-+||.++.+=.+.+++||+-|.|
T Consensus 78 ~~EL~~KL~~kg~~~e~i~~vl~~L~~ 104 (221)
T 3d5l_A 78 ESDIVKKLKEIDTPEEFVEPILKKLRG 104 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457888888888777899999999976
No 4
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.10 E-value=32 Score=24.18 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred HHHHHHHhhhh-----c-----ccccchHHHHHHHHH
Q 032836 92 RTHLLNKLAKK-----D-----MFGDSLEDVVGICTE 118 (132)
Q Consensus 92 r~hLl~KLskk-----D-----~FGd~leeVV~VCtE 118 (132)
+.+|-+||.++ + +=.+.+++||+-|.|
T Consensus 22 ~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~ 58 (159)
T 3c1d_A 22 EQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHE 58 (159)
T ss_dssp HHHHHHHHHCC-----------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHH
Confidence 45778888874 4 556789999998877
No 5
>4dhx_A Protein GANP, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=28.77 E-value=26 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhc
Q 032836 114 GICTEVMLSFTLSN 127 (132)
Q Consensus 114 ~VCtEIfs~FLh~e 127 (132)
+||+.+++.||..|
T Consensus 51 ~VC~~lvdlfL~~E 64 (75)
T 4dhx_A 51 DVCAHLVDLFLVEE 64 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999765
No 6
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=27.44 E-value=19 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=12.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhh
Q 032836 80 IPEFADSETQKFRTHLLNKLAK 101 (132)
Q Consensus 80 IPEFAe~ETeKFr~hLl~KLsk 101 (132)
.|.|-.-|+.|=+++|.||..+
T Consensus 2 ~~K~V~~~~D~aqEEMAWqIA~ 23 (45)
T 3im4_C 2 SPEFVQGNTDEAQEELAWKIAK 23 (45)
T ss_dssp ---------CHHHHHHHHHHHH
T ss_pred CCccccCCchHHHHHHHHHHHH
Confidence 3778888999999999999987
No 7
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=27.38 E-value=53 Score=22.03 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=20.2
Q ss_pred ccccchHHHHH--HHHHHHHHHhhhccCC
Q 032836 104 MFGDSLEDVVG--ICTEVMLSFTLSNFFF 130 (132)
Q Consensus 104 ~FGd~leeVV~--VCtEIfs~FLh~eYgG 130 (132)
-++.++++|.. +.-+.|.+||.+|++.
T Consensus 22 ~w~~sl~~iL~~p~g~~~F~~Fl~~e~s~ 50 (146)
T 2af0_A 22 LWSEAFDELLASKYGLAAFRAFLKSEFCE 50 (146)
T ss_dssp HTTTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred HHHhHHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 35566777776 6778899999988864
No 8
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=26.92 E-value=55 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=16.8
Q ss_pred cccchHHHHH--HHHHHHHHHhhhccCC
Q 032836 105 FGDSLEDVVG--ICTEVMLSFTLSNFFF 130 (132)
Q Consensus 105 FGd~leeVV~--VCtEIfs~FLh~eYgG 130 (132)
++.++++|.. +.-+.|.+||.+||+.
T Consensus 22 ~~~sl~~iL~~p~g~~~F~~FL~~e~s~ 49 (145)
T 2bv1_A 22 WSQSLEKLLANQTGQNVFGSFLKSEFSE 49 (145)
T ss_dssp TTTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred HHHhHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 3445555554 5666788888877764
No 9
>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia virus} PDB: 2uxe_A
Probab=25.58 E-value=50 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=24.4
Q ss_pred HHHHhhhhcccccchHHHHHHHHHHHHHHhhhcc
Q 032836 95 LLNKLAKKDMFGDSLEDVVGICTEVMLSFTLSNF 128 (132)
Q Consensus 95 Ll~KLskkD~FGd~leeVV~VCtEIfs~FLh~eY 128 (132)
.++||-+++.=..+..|++|+|+=+-.++ +..|
T Consensus 75 ~l~Kl~~~~~~v~~~~E~IGlCaivaE~~-~~~~ 107 (137)
T 2i39_A 75 LLDRLNQPVNNIEDAKRMIAISAKVARDI-GERS 107 (137)
T ss_dssp HHHHHTSCCCSHHHHHHHHHHHHHHHHHH-CTTC
T ss_pred hhhccCcccccccCHHHHHHHHHHHHHHH-cccc
Confidence 45566665556678999999999888777 6554
No 10
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=25.34 E-value=35 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=29.5
Q ss_pred cccccCCCCCc--hhhHHHHHHHHHHHHHHhhh---h---cccccchHHHHHHH
Q 032836 71 AAEYKFPDPIP--EFADSETQKFRTHLLNKLAK---K---DMFGDSLEDVVGIC 116 (132)
Q Consensus 71 ~a~ykfPDPIP--EFAe~ETeKFr~hLl~KLsk---k---D~FGd~leeVV~VC 116 (132)
|.+||+.|||| +.-+.|.+-.| .|++|+.+ + +.|=+-++.+..-|
T Consensus 63 a~~y~~g~~~~~v~YT~eE~~~W~-~l~~r~~~l~~~~Ac~eyl~gl~~L~~~~ 115 (325)
T 1j8u_A 63 AYNYRHGQPIPRVEYMEEEKKTWG-TVFKTLKSLYKTHACYEYNHIFPLLEKYC 115 (325)
T ss_dssp HHHCCTTSCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHBCHHHHHHHHHHHHHH
T ss_pred HHhCcCCCCCCcccCCHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 45999999999 99999988887 45555442 1 44444444444333
No 11
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=25.27 E-value=39 Score=29.02 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=22.1
Q ss_pred ccccCCCCCc--hhhHHHHHHHHHHHHHHhh
Q 032836 72 AEYKFPDPIP--EFADSETQKFRTHLLNKLA 100 (132)
Q Consensus 72 a~ykfPDPIP--EFAe~ETeKFr~hLl~KLs 100 (132)
.+||+.|||| +.-+.|.+-.|. +++||.
T Consensus 166 ~~~~~g~~~~~v~Yt~~e~~~W~~-l~~~~~ 195 (429)
T 1phz_A 166 YNYRHGQPIPRVEYTEEEKQTWGT-VFRTLK 195 (429)
T ss_dssp HTCCTTSCCCCCCCCHHHHHHHHH-HHHHHH
T ss_pred HhCcCCCCCCcccCCHHHHHHHHH-HHHHHH
Confidence 3999999999 999999888863 445544
No 12
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=24.81 E-value=15 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=12.7
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhh
Q 032836 76 FPDPIPEFADSETQKFRTHLLNKLA 100 (132)
Q Consensus 76 fPDPIPEFAe~ETeKFr~hLl~KLs 100 (132)
|.|=.=++|+.+.||||..++..|.
T Consensus 51 ~~~~a~~~a~~~~e~~~~~~~~~~~ 75 (76)
T 1mnt_A 51 YRNDAERLADEQSELVKKMVFDTLK 75 (76)
T ss_dssp CCCSHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHccHHHHHHHHHHHhc
Confidence 4555566999999999999988764
No 13
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=24.60 E-value=54 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.6
Q ss_pred ccccchHHHHH--HHHHHHHHHhhhccCC
Q 032836 104 MFGDSLEDVVG--ICTEVMLSFTLSNFFF 130 (132)
Q Consensus 104 ~FGd~leeVV~--VCtEIfs~FLh~eYgG 130 (132)
-++.++++|.. +.-+.|.+||.+|++.
T Consensus 34 ~w~~sl~~iL~dp~g~~~F~~FL~~e~s~ 62 (155)
T 2ihd_A 34 RWADSFDVLLSHKYGVAAFRAFLKTEFSE 62 (155)
T ss_dssp HTTSCHHHHHTSHHHHHHHHHHHHHTTCT
T ss_pred HHHHhHHHHHCCHHHHHHHHHHHHHhCCH
Confidence 35567777766 7778999999998864
No 14
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=24.02 E-value=58 Score=22.04 Aligned_cols=26 Identities=8% Similarity=0.117 Sum_probs=15.6
Q ss_pred cccchHHHHH--HHHHHHHHHhhhccCC
Q 032836 105 FGDSLEDVVG--ICTEVMLSFTLSNFFF 130 (132)
Q Consensus 105 FGd~leeVV~--VCtEIfs~FLh~eYgG 130 (132)
++.++++|.. +.-+.|.+||.+|++.
T Consensus 21 w~~sl~~iL~~p~g~~~F~~FL~~e~~~ 48 (147)
T 1fqi_A 21 WAFNFSELIRDPKGRQSFQHFLRKEFSG 48 (147)
T ss_dssp TTTCHHHHHTSHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHHHHCCHHHHHHHHHHHHHhcCH
Confidence 3444555544 4556777777777653
No 15
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=23.87 E-value=34 Score=25.67 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhh-hcccccc
Q 032836 85 DSETQKFRTHLLNKLAK-KDMFGDS 108 (132)
Q Consensus 85 e~ETeKFr~hLl~KLsk-kD~FGd~ 108 (132)
..|..+|...||.+|++ |...+++
T Consensus 53 ~~e~~~f~~~LLd~LE~~K~~~~~~ 77 (183)
T 2lxl_A 53 TPECRKFLSKLMDQLEALKKQLGDN 77 (183)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ChhHHHHHHHHHHHHHHHHHhccch
Confidence 57899999999999997 5555554
No 16
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=23.25 E-value=41 Score=28.42 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=23.1
Q ss_pred hcccccCCCCCc--hhhHHHHHHHHHHHHHHhh
Q 032836 70 RAAEYKFPDPIP--EFADSETQKFRTHLLNKLA 100 (132)
Q Consensus 70 r~a~ykfPDPIP--EFAe~ETeKFr~hLl~KLs 100 (132)
-|.+|+..|||| +.-+.|.+-.| .|++|+.
T Consensus 55 ~a~~y~~g~~~p~v~YT~eE~~~W~-~l~~r~~ 86 (343)
T 1toh_A 55 IAFQYKHGEPIPHVEYTAEEIATWK-EVYVTLK 86 (343)
T ss_dssp HHHHCCTTSCCCCCCCCHHHHHHHH-HHHHHHH
T ss_pred HHHhCcCCCCCCcCCCCHHHHHHHH-HHHHHHH
Confidence 345999999999 89999988887 4555544
No 17
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=21.70 E-value=79 Score=20.75 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICT 117 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~VCt 117 (132)
+.|-..+-++|.=-|+||..+|+.-|.=|
T Consensus 15 ~~f~~~~~~~~~~p~~fG~NlDAL~D~Lt 43 (90)
T 2cx6_A 15 EDFYRDFSQTFGLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHHHHHHTTCCTTSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhhCCCHHHHHHHHc
Confidence 44667777777667999999999998755
No 18
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.07 E-value=57 Score=22.06 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=14.1
Q ss_pred chHHHHH--HHHHHHHHHhhhccC
Q 032836 108 SLEDVVG--ICTEVMLSFTLSNFF 129 (132)
Q Consensus 108 ~leeVV~--VCtEIfs~FLh~eYg 129 (132)
++++|.. +.-+.|.+||.+||+
T Consensus 28 sl~~iL~~~~g~~~F~~Fl~~e~s 51 (150)
T 2crp_A 28 SLDKLLQNNYGLASFKSFLKSEFS 51 (150)
T ss_dssp CHHHHHHSHHHHHHHHHHHHHTTC
T ss_pred hHHHHHCCHHHHHHHHHHHHHhcC
Confidence 4444443 556678888888775
No 19
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=20.44 E-value=89 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHH
Q 032836 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118 (132)
Q Consensus 89 eKFr~hLl~KLskkD~FGd~leeVV~VCtE 118 (132)
+.|-..+-++|.=-|+||..+|+..|.=|.
T Consensus 15 ~~~~~~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 15 SDLHQTLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHHHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCCHHHHHHHhcC
Confidence 345666666665579999999999987554
Done!