BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032837
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LOO|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a From
Noe Data
pdb|2LOP|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a
Length = 108
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 85 LTVVMAQRYMETSKVMPAGIVAGIS 109
L +M R+ + K+MPAG+VAG+S
Sbjct: 72 LATIMGVRFKRSKKIMPAGLVAGLS 96
>pdb|2LOS|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14c
Length = 121
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 81 CAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
+ L +M R+ + K MPAG++AG S LM
Sbjct: 77 TSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 108
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 68 FRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 112
F FR A+DT C++ L + S PA IV GI+ L+
Sbjct: 150 FDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLL 194
>pdb|4DBL|A Chain A, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|B Chain B, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|F Chain F, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|G Chain G, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4FI3|A Chain A, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|B Chain B, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 349
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 5/37 (13%)
Query: 82 AAVLTVVM---AQRYMETSKVMPAGIVAGI--SALMT 113
A ++T+++ A+R++ TS+++ AG+ GI SALMT
Sbjct: 148 ALIITLILLRFARRHLSTSRLLLAGVALGIISSALMT 184
>pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|B Chain B, Bacterial Abc Transporter Involved In B12 Uptake
Length = 326
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 5/37 (13%)
Query: 82 AAVLTVVM---AQRYMETSKVMPAGIVAGI--SALMT 113
A ++T+++ A+R++ TS+++ AG+ GI SAL T
Sbjct: 125 ALIITLILLRFARRHLSTSRLLLAGVALGIICSALXT 161
>pdb|2QI9|A Chain A, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|B Chain B, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 326
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 5/37 (13%)
Query: 82 AAVLTVVM---AQRYMETSKVMPAGIVAGI--SALMT 113
A ++T+++ A+R++ TS+++ AG+ GI SAL T
Sbjct: 125 ALIITLILLRFARRHLSTSRLLLAGVALGIISSALXT 161
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 61 AIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETSKVM 100
AI++E E FR +YA++ ++ V++ Y + K++
Sbjct: 43 AIIVENEDEFRNVYYALEPTVSSEEAEVISALYDDLKKIL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,422,831
Number of Sequences: 62578
Number of extensions: 59519
Number of successful extensions: 148
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 7
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)