Query 032837
Match_columns 132
No_of_seqs 102 out of 334
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 100.0 1.7E-35 3.8E-40 215.2 10.2 108 1-128 1-110 (110)
2 PF03647 Tmemb_14: Transmembra 100.0 3.2E-29 6.8E-34 178.1 3.9 96 4-118 1-96 (96)
3 COG5548 Small integral membran 99.8 1.5E-20 3.4E-25 134.4 7.4 91 6-115 6-96 (105)
4 PF11286 DUF3087: Protein of u 69.2 21 0.00045 28.1 6.3 32 79-122 56-87 (165)
5 PF01032 FecCD: FecCD transpor 58.3 42 0.00092 28.0 6.6 32 24-55 39-70 (311)
6 PF10315 DUF2416: Protein of u 55.0 13 0.00027 27.4 2.6 68 33-119 36-106 (108)
7 PF07214 DUF1418: Protein of u 53.5 76 0.0016 22.9 6.3 18 36-53 16-33 (96)
8 PRK01030 tetrahydromethanopter 53.4 1.4E+02 0.003 25.2 9.3 26 29-54 159-184 (264)
9 PF04156 IncA: IncA protein; 51.0 36 0.00077 25.8 4.7 43 7-49 11-60 (191)
10 PRK03784 vtamin B12-transporte 50.5 1.6E+02 0.0035 25.1 9.5 33 23-55 54-86 (331)
11 PF12751 Vac7: Vacuolar segreg 49.3 12 0.00026 33.0 2.0 26 4-29 304-329 (387)
12 COG3859 Predicted membrane pro 48.0 1E+02 0.0023 24.6 6.9 81 23-123 49-132 (185)
13 PRK03776 phosphoglycerol trans 46.5 1E+02 0.0022 29.6 7.8 24 39-63 7-30 (762)
14 PF02439 Adeno_E3_CR2: Adenovi 46.2 35 0.00076 20.7 3.1 25 25-49 2-26 (38)
15 PRK10577 iron-hydroxamate tran 43.3 2.8E+02 0.006 25.8 10.0 31 25-55 60-90 (668)
16 PF02656 DUF202: Domain of unk 43.2 89 0.0019 20.1 6.4 21 79-99 53-73 (73)
17 PF09586 YfhO: Bacterial membr 41.3 2.8E+02 0.0061 25.7 9.7 74 17-110 104-179 (843)
18 PF06570 DUF1129: Protein of u 40.4 1.7E+02 0.0038 22.7 11.4 19 9-27 89-107 (206)
19 PF05283 MGC-24: Multi-glycosy 39.6 33 0.00071 27.3 3.0 27 27-53 159-185 (186)
20 PF10131 PTPS_related: 6-pyruv 38.5 3.2E+02 0.007 25.2 10.0 60 19-85 216-275 (616)
21 PF09925 DUF2157: Predicted me 35.4 1.8E+02 0.0038 21.3 7.7 26 36-61 38-66 (145)
22 PTZ00233 variable surface prot 35.2 25 0.00055 32.1 1.9 35 93-129 435-469 (509)
23 PF06166 DUF979: Protein of un 35.1 1.2E+02 0.0027 26.0 5.9 31 97-127 45-75 (308)
24 PRK10209 acid-resistance membr 34.2 2.2E+02 0.0047 22.0 10.8 43 8-50 51-98 (190)
25 PF04588 HIG_1_N: Hypoxia indu 33.5 57 0.0012 20.5 2.8 25 95-119 2-26 (54)
26 PF09990 DUF2231: Predicted me 32.6 1.7E+02 0.0036 20.1 9.0 24 28-51 6-29 (104)
27 PRK11228 fecC iron-dicitrate t 32.3 3.1E+02 0.0067 23.1 10.3 29 27-55 51-79 (323)
28 COG5336 Uncharacterized protei 31.1 2.2E+02 0.0049 21.2 7.2 45 68-115 40-88 (116)
29 PRK10440 iron-enterobactin tra 31.0 3.4E+02 0.0073 23.2 8.8 28 28-55 60-87 (330)
30 PF03239 FTR1: Iron permease F 31.0 2.5E+02 0.0054 23.3 7.1 28 12-40 150-177 (306)
31 PRK09430 djlA Dna-J like membr 30.8 44 0.00096 27.5 2.5 26 14-40 6-31 (267)
32 PRK09777 fecD iron-dicitrate t 28.8 3.6E+02 0.0078 22.8 9.4 29 27-55 51-79 (318)
33 PF01810 LysE: LysE type trans 28.7 2.4E+02 0.0053 20.8 7.5 34 92-126 50-83 (191)
34 PRK10441 iron-enterobactin tra 28.7 3.7E+02 0.0081 22.9 9.6 31 25-55 58-88 (335)
35 PF04391 DUF533: Protein of un 28.5 96 0.0021 24.5 4.0 40 16-55 12-55 (188)
36 COG5336 Uncharacterized protei 27.6 2.4E+02 0.0052 21.0 5.7 27 31-63 52-78 (116)
37 PF05283 MGC-24: Multi-glycosy 27.5 60 0.0013 25.8 2.7 22 101-122 164-185 (186)
38 COG3949 Uncharacterized membra 26.9 2.7E+02 0.0058 24.4 6.7 76 9-89 194-270 (349)
39 PF13572 DUF4134: Domain of un 26.4 2.4E+02 0.0053 20.1 5.9 37 19-58 36-72 (98)
40 PF01277 Oleosin: Oleosin; In 25.3 2.9E+02 0.0062 20.5 8.8 42 79-126 33-87 (118)
41 PF11158 DUF2938: Protein of u 24.8 2.2E+02 0.0048 21.7 5.2 48 75-123 67-114 (150)
42 PF02038 ATP1G1_PLM_MAT8: ATP1 24.3 1E+02 0.0023 19.7 2.8 18 32-49 16-33 (50)
43 PRK10577 iron-hydroxamate tran 24.0 5.9E+02 0.013 23.7 9.6 33 23-55 393-425 (668)
44 TIGR03869 F420-0_ABCperm propo 23.8 4.6E+02 0.0099 22.3 10.0 31 25-55 51-81 (325)
45 COG4389 Site-specific recombin 23.6 6.2E+02 0.013 23.8 10.0 44 79-131 621-668 (677)
46 PF09930 DUF2162: Predicted tr 23.4 4.1E+02 0.0088 21.6 7.7 23 35-57 72-95 (224)
47 COG3300 MHYT domain (predicted 22.0 4.7E+02 0.01 21.8 8.3 40 2-41 75-118 (236)
48 COG5305 Predicted membrane pro 20.8 5.2E+02 0.011 23.9 7.7 96 20-120 114-221 (552)
49 TIGR02741 TraQ type-F conjugat 20.8 3E+02 0.0065 19.2 4.7 43 80-122 18-60 (80)
50 TIGR02762 TraL_TIGR type IV co 20.6 3E+02 0.0066 19.1 5.0 41 14-59 26-66 (95)
51 PRK13727 conjugal transfer pil 20.6 2.8E+02 0.0061 19.3 4.6 43 80-122 18-60 (80)
52 COG4872 Predicted membrane pro 20.5 4.7E+02 0.01 23.3 6.9 13 91-103 96-108 (394)
53 PF05513 TraA: TraA; InterPro 20.5 1.2E+02 0.0027 22.6 3.0 27 15-42 85-111 (119)
54 COG1968 BacA Undecaprenyl pyro 20.2 5.3E+02 0.011 21.7 9.7 38 79-116 229-266 (270)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=215.17 Aligned_cols=108 Identities=52% Similarity=0.792 Sum_probs=99.3
Q ss_pred CccccchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHhhhhhhhhhHHH
Q 032837 1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETEFRFRAEFYAVDT 79 (132)
Q Consensus 1 ~hDfc~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 79 (132)
|||+|++++|++|+++||+|||.|+||+|||++|+.+|++ +||.+++.|+|++ ++... +
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~-----------------l 60 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVA-----------------L 60 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhH-----------------H
Confidence 8999999999999999999999999999999999999974 5778888888876 54433 4
Q ss_pred H-HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 032837 80 V-CAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIP 128 (132)
Q Consensus 80 ~-~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g~n~~p 128 (132)
. +|++|+.+|+.||.+|||+||+|+++.+|++|++||.|+++++.||||
T Consensus 61 ~~~s~~L~gvmg~R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~ 110 (110)
T KOG4267|consen 61 GGTSAALLGVMGQRFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP 110 (110)
T ss_pred HHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4 799999999999999999999999999999999999999999999997
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.95 E-value=3.2e-29 Score=178.14 Aligned_cols=96 Identities=50% Similarity=0.825 Sum_probs=85.1
Q ss_pred ccchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHH
Q 032837 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAA 83 (132)
Q Consensus 4 fc~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~ 83 (132)
||++++|++++.+||++||+|+||+|||++|+++|++++.+++++.+ |+++++.++ +.+|+
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~~------~~~~~~~~~-------------l~~s~ 61 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSLT------NQKWGSELA-------------LAISA 61 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHH-------------HHHHH
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhhc------cCCccHHHH-------------HHHHH
Confidence 79999999999999999999999999999999999999999998862 445666655 88999
Q ss_pred HHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHH
Q 032837 84 VLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 118 (132)
Q Consensus 84 ~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~ 118 (132)
+|+.+|+.|+.||+|+||+|+++++|++|+++|.|
T Consensus 62 ~L~~~m~~R~~~t~k~~Pagl~~~~s~~~~~~y~Y 96 (96)
T PF03647_consen 62 VLAGVMGYRYIKTRKFMPAGLMALLSGAMLAFYYY 96 (96)
T ss_dssp HHHHCCTSSS-SSSSSCCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999976
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=99.83 E-value=1.5e-20 Score=134.44 Aligned_cols=91 Identities=33% Similarity=0.516 Sum_probs=80.4
Q ss_pred chHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 032837 6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVL 85 (132)
Q Consensus 6 ~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L 85 (132)
-.+.++.|..+||+|||.+|+|.+||++|+.+|+.+.+++|+.+| ++.++++.+ ++.|++|
T Consensus 6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A-------------~~~s~~L 66 (105)
T COG5548 6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILA-------------TVVSAAL 66 (105)
T ss_pred HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehH-------------HHHHHHH
Confidence 368899999999999999999999999999999999999999876 567888877 9999999
Q ss_pred HHHHHHHHhhhCCCcchHHHHHHHHHHHHH
Q 032837 86 TVVMAQRYMETSKVMPAGIVAGISALMTGF 115 (132)
Q Consensus 86 ~~~m~~R~~kt~K~mPaGlva~ls~~~~~~ 115 (132)
....+.|+++|||+||+++.++......-+
T Consensus 67 l~~~~~R~~~sRKpvP~~Lt~lgg~~s~y~ 96 (105)
T COG5548 67 LVFFALRLVRSRKPVPAGLTTLGGMLSLYV 96 (105)
T ss_pred HHhcchhccccCCCcchHHHHHhhhhhhhh
Confidence 999999999999999997776655444333
No 4
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=69.18 E-value=21 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhc
Q 032837 79 TVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIAT 122 (132)
Q Consensus 79 ~~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~ 122 (132)
.+++++++.. ..|..|++.+|-. ++|+|++-.
T Consensus 56 Vil~~~~~~~-~l~~~k~~p~m~E-----------v~YvW~LKq 87 (165)
T PF11286_consen 56 VILGLLLTSA-LLRQLKTHPFMTE-----------VYYVWQLKQ 87 (165)
T ss_pred HHHHHHHHHH-HHHHHccChHHHH-----------HHHHHHHHH
Confidence 4455544444 4457899988887 788888754
No 5
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=58.26 E-value=42 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=26.0
Q ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 24 KKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 24 k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
..-..|-+++.+..|+.+..+|...+...||+
T Consensus 39 ~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNp 70 (311)
T PF01032_consen 39 WDLRLPRILAAILVGAALALSGALLQTLTRNP 70 (311)
T ss_dssp CCTCHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 34556888999999999999999988877776
No 6
>PF10315 DUF2416: Protein of unknown function (DUF2416); InterPro: IPR019419 This entry represents conserved proteins with unknown function and is restricted to fungi.
Probab=55.00 E-value=13 Score=27.39 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC---CCcchHHHHHHH
Q 032837 33 GGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYMETS---KVMPAGIVAGIS 109 (132)
Q Consensus 33 aGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L~~~m~~R~~kt~---K~mPaGlva~ls 109 (132)
.=+.+|.+.+..+|.++. | |..-+-... .+=|..=..+-++|.+|.. |+.|- .++.++
T Consensus 36 ~~llFg~a~~lg~ymi~d----G-D~~NGsGf~-------------~AWS~lYLivngr~siksl~~gr~~PL-~Ls~~a 96 (108)
T PF10315_consen 36 SCLLFGAAFALGGYMIYD----G-DLENGSGFV-------------TAWSTLYLIVNGRKSIKSLRRGRVWPL-ALSGLA 96 (108)
T ss_pred HhHHHHHHHHhhhheeec----C-CccccchHH-------------HHHHHHHHHHcChhhhHHhccCCchHH-HHHHHH
Confidence 445666777777888763 2 222233333 5557777788888888875 89999 677777
Q ss_pred HHHHHHHHHH
Q 032837 110 ALMTGFYLYK 119 (132)
Q Consensus 110 ~~~~~~y~~~ 119 (132)
+.-+..|.++
T Consensus 97 ~~na~lYG~~ 106 (108)
T PF10315_consen 97 LGNAGLYGRR 106 (108)
T ss_pred Hhchhheeee
Confidence 7767777654
No 7
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=53.46 E-value=76 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 032837 36 GTGLLLVLAGYLSLKAFE 53 (132)
Q Consensus 36 ~~G~ll~~ag~l~~~~~~ 53 (132)
+.|.+++..+|++.+.|-
T Consensus 16 ~lG~~LLv~a~Lsin~~l 33 (96)
T PF07214_consen 16 VLGMILLVLAYLSINDYL 33 (96)
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 567888899999987654
No 8
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=53.38 E-value=1.4e+02 Score=25.23 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 032837 29 ASLAGGVGTGLLLVLAGYLSLKAFEK 54 (132)
Q Consensus 29 ~SLiaGv~~G~ll~~ag~l~~~~~~~ 54 (132)
++.++.-..+.++...+..+++-++.
T Consensus 159 ~~vi~~G~IAl~FI~~~mAIlHPFNA 184 (264)
T PRK01030 159 TSVIATGFIALLFILGGMAILHPFNA 184 (264)
T ss_pred HHHhcccHHHHHHHHHHHHhcCcccc
Confidence 46666666777777777777665544
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.97 E-value=36 Score=25.79 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhhhhhhhcCCh-h------hhHHHHHHHHHHHHHHHHHH
Q 032837 7 TIPYGLILIGGGIVGFAKKGST-A------SLAGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 7 ~~~yg~Ll~~GGi~Gy~k~gS~-~------SLiaGv~~G~ll~~ag~l~~ 49 (132)
.++-|++++++|+.+.+...+- . .-++.++.|.+++..|+...
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999997776642 2 22223334666666666544
No 10
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=50.45 E-value=1.6e+02 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=27.0
Q ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 23 AKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 23 ~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
+..-..|=+++.+..|+.+..+|...+...||+
T Consensus 54 i~~~RlPRil~a~l~G~~La~sG~llQ~l~rNp 86 (331)
T PRK03784 54 VWQLRLPRTLAVLLVGAALAVSGAVMQALFENP 86 (331)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334456788999999999999999998887776
No 11
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=49.30 E-value=12 Score=33.04 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhhhhhhhhhcCChh
Q 032837 4 FCFTIPYGLILIGGGIVGFAKKGSTA 29 (132)
Q Consensus 4 fc~~~~yg~Ll~~GGi~Gy~k~gS~~ 29 (132)
+|+.+.+-+||++||++||+.+-++|
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 68888888899999999999877664
No 12
>COG3859 Predicted membrane protein [Function unknown]
Probab=48.05 E-value=1e+02 Score=24.61 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=45.9
Q ss_pred hhcCChhhhHHHHHHHHHHHHHH--HHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhh-hCCC
Q 032837 23 AKKGSTASLAGGVGTGLLLVLAG--YLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYME-TSKV 99 (132)
Q Consensus 23 ~k~gS~~SLiaGv~~G~ll~~ag--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L~~~m~~R~~k-t~K~ 99 (132)
+|.|=+..+.+|+..|.+-+..| |...- +..- ..|- + +-.+--+...+...-.| ++|.
T Consensus 49 fRrG~kaG~~tGLl~Gll~~i~G~~Y~lhp-------sQ~~------ldYi-----l-af~~iG~aG~F~~~~~~~~~k~ 109 (185)
T COG3859 49 FRRGLKAGLLTGLLWGLLHLILGKAYILHP-------SQVL------LDYI-----L-AFMAIGFAGLFASSVRKQKKKL 109 (185)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhccH-------HHHH------HHhh-----H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888877776 43321 1111 1111 0 23444456666655555 6777
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcC
Q 032837 100 MPAGIVAGISALMTGFYLYKIATG 123 (132)
Q Consensus 100 mPaGlva~ls~~~~~~y~~~l~~g 123 (132)
.+.-+.+ .=.+...+|.+-..+|
T Consensus 110 i~~~~~~-~~~av~lRyl~HfisG 132 (185)
T COG3859 110 INKALGG-VFIAVFLRYLFHFISG 132 (185)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7774433 3345567787776655
No 13
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=46.53 E-value=1e+02 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHH
Q 032837 39 LLLVLAGYLSLKAFEKKKNSYFAIV 63 (132)
Q Consensus 39 ~ll~~ag~l~~~~~~~~~~~~~~~~ 63 (132)
.++.+++.+++ .||+++|..+...
T Consensus 7 ~~~~~~~~~~~-~~k~~~~~~~~~~ 30 (762)
T PRK03776 7 FALFLASVLIY-AWKAGRNTWWFAA 30 (762)
T ss_pred HHHHHHHHHHH-HHhcccccchHHH
Confidence 44555666666 4788877766443
No 14
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=46.20 E-value=35 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=19.9
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHH
Q 032837 25 KGSTASLAGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 25 ~gS~~SLiaGv~~G~ll~~ag~l~~ 49 (132)
.+|+.|.|+|++.|.+++..-...+
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFYY 26 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998876665543
No 15
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=43.25 E-value=2.8e+02 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.184 Sum_probs=25.9
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 25 ~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.-..|-+++++..|+.+..+|...+...||+
T Consensus 60 ~~RlPR~l~a~l~G~~La~sG~~lQ~l~rNp 90 (668)
T PRK10577 60 YSRLPRLAIALLVGAALGLAGALLQQVLRNP 90 (668)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345888999999999999999988877776
No 16
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=43.20 E-value=89 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCC
Q 032837 79 TVCAAVLTVVMAQRYMETSKV 99 (132)
Q Consensus 79 ~~~S~~L~~~m~~R~~kt~K~ 99 (132)
.+++.+....-..||.+.+|+
T Consensus 53 ~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 53 IVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 455555556666688887764
No 17
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=41.27 E-value=2.8e+02 Score=25.65 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=39.1
Q ss_pred hhhhhhhhcCChhhh--HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 032837 17 GGIVGFAKKGSTASL--AGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTVVMAQRYM 94 (132)
Q Consensus 17 GGi~Gy~k~gS~~SL--iaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L~~~m~~R~~ 94 (132)
|-.+-+.-++...+. .+-++.|.++..+|+...+.+ +..+ +- ..+=.-|...-.-|+.
T Consensus 104 g~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~----~~~f-ld---------------~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 104 GLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSF----NIMF-LD---------------AMILLPLLLLGIERLL 163 (843)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhh----hHHH-HH---------------HHHHHHHHHHHHHHHH
Confidence 333333333333333 555555677778888876421 2222 11 2233334445556899
Q ss_pred hhCCCcchHHHHHHHH
Q 032837 95 ETSKVMPAGIVAGISA 110 (132)
Q Consensus 95 kt~K~mPaGlva~ls~ 110 (132)
+.+|..+=-+...++.
T Consensus 164 ~~~k~~~~~~~~~l~~ 179 (843)
T PF09586_consen 164 KEKKWWLFIISLALAL 179 (843)
T ss_pred hcCCcchhHHHHHHHH
Confidence 9999877644433333
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.40 E-value=1.7e+02 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhhhhhcCC
Q 032837 9 PYGLILIGGGIVGFAKKGS 27 (132)
Q Consensus 9 ~yg~Ll~~GGi~Gy~k~gS 27 (132)
.++.+..+-|+++++.+++
T Consensus 89 ~~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3566777779999877743
No 19
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=39.61 E-value=33 Score=27.34 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhh
Q 032837 27 STASLAGGVGTGLLLVLAGYLSLKAFE 53 (132)
Q Consensus 27 S~~SLiaGv~~G~ll~~ag~l~~~~~~ 53 (132)
+..|.|+|+++-+.++...|..+|.+|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 348999999999888889999888765
No 20
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=38.49 E-value=3.2e+02 Score=25.21 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=29.0
Q ss_pred hhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 032837 19 IVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAVL 85 (132)
Q Consensus 19 i~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L 85 (132)
.+.+.++++.++++.+.+. + ..........|+. .+...++-++|+.+...+..+.+.+.+
T Consensus 216 ~i~~~~~r~~~~l~~~~v~--l-~~~~~~p~~~l~~----lP~~~l~~p~RFl~i~~~~~~ll~a~~ 275 (616)
T PF10131_consen 216 GIIFWKKRRLISLIWSFVI--L-LLSTPFPWPILKH----LPLLQLQFPWRFLSIASVFLALLGALL 275 (616)
T ss_pred HHHHhcccchhhHHHHHHH--H-HHHhhhHHHHHHh----ChHhheeccHHHHHHHHHHHHHHHHHH
Confidence 3557788888886666543 1 1222233333432 122223445666655544444433333
No 21
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.41 E-value=1.8e+02 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH--HHhhh-cccchHH
Q 032837 36 GTGLLLVLAGYLSL--KAFEK-KKNSYFA 61 (132)
Q Consensus 36 ~~G~ll~~ag~l~~--~~~~~-~~~~~~~ 61 (132)
.+|++++.+|+... ..|++ ++..+..
T Consensus 38 ~lGall~~~gii~fvA~nW~~i~~~~k~~ 66 (145)
T PF09925_consen 38 YLGALLLGLGIILFVAANWDDIPRLAKLG 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 44555555555433 45665 4443433
No 22
>PTZ00233 variable surface protein Vir18; Provisional
Probab=35.20 E-value=25 Score=32.05 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=26.7
Q ss_pred HhhhCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 032837 93 YMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPA 129 (132)
Q Consensus 93 ~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g~n~~p~ 129 (132)
.+||. +|.|++.+|+++-=.==.||+|+..|+++-
T Consensus 435 iIktS--aPmGIvLLLGLLFKyTPLWRvLTKknRKk~ 469 (509)
T PTZ00233 435 IIKTS--MPIGIALLLGLLFKYTPLWRVLTKKNRKKG 469 (509)
T ss_pred eeecc--cchhHHHHHHHhhccchhHHhhhhcccccc
Confidence 44554 999999999887544458999999997654
No 23
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=35.06 E-value=1.2e+02 Score=26.03 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=20.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCCCC
Q 032837 97 SKVMPAGIVAGISALMTGFYLYKIATGGNHI 127 (132)
Q Consensus 97 ~K~mPaGlva~ls~~~~~~y~~~l~~g~n~~ 127 (132)
++++|.-.+.++=.+|...=..+-+.-++++
T Consensus 45 G~~lp~~~~G~lvl~m~~la~~~~v~~g~~~ 75 (308)
T PF06166_consen 45 GDYLPPFVVGILVLVMALLAGFGQVGIGSYK 75 (308)
T ss_pred CccchhHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 5688986666666667666666666555533
No 24
>PRK10209 acid-resistance membrane protein; Provisional
Probab=34.24 E-value=2.2e+02 Score=21.97 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhh---hhhcCC--hhhhHHHHHHHHHHHHHHHHHHH
Q 032837 8 IPYGLILIGGGIVG---FAKKGS--TASLAGGVGTGLLLVLAGYLSLK 50 (132)
Q Consensus 8 ~~yg~Ll~~GGi~G---y~k~gS--~~SLiaGv~~G~ll~~ag~l~~~ 50 (132)
+..|..+.+.|++. +.+.+. ..+...+...|.+++..|+....
T Consensus 51 ~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~ 98 (190)
T PRK10209 51 TVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIR 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666652 222222 23444456666666667766654
No 25
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=33.47 E-value=57 Score=20.50 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=15.0
Q ss_pred hhCCCcchHHHHHHHHHHHHHHHHH
Q 032837 95 ETSKVMPAGIVAGISALMTGFYLYK 119 (132)
Q Consensus 95 kt~K~mPaGlva~ls~~~~~~y~~~ 119 (132)
|.++++|.|..++.+.+....|..+
T Consensus 2 ke~plv~ig~~~~~~~l~~g~~~~~ 26 (54)
T PF04588_consen 2 KENPLVPIGMLATVGALAYGLYNFR 26 (54)
T ss_dssp -S--CHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888887777777666555443
No 26
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=32.56 E-value=1.7e+02 Score=20.12 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 032837 28 TASLAGGVGTGLLLVLAGYLSLKA 51 (132)
Q Consensus 28 ~~SLiaGv~~G~ll~~ag~l~~~~ 51 (132)
.--++.|.+.+..-..+|......
T Consensus 6 ~wll~~G~l~~~~A~~~G~~d~~~ 29 (104)
T PF09990_consen 6 FWLLVLGLLGAIVAVLTGFVDLLT 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888777788776543
No 27
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=32.27 E-value=3.1e+02 Score=23.12 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=24.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 27 S~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
..|=+++++..|+.+..+|...++..||+
T Consensus 51 RlPR~l~a~l~G~~La~sG~~lQ~l~rNp 79 (323)
T PRK11228 51 RLPRSLVAVLIGASLALAGALLQTLTHNP 79 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34668899999999999999998887776
No 28
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.10 E-value=2.2e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=26.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH----HHHhhhCCCcchHHHHHHHHHHHHH
Q 032837 68 FRFRAEFYAVDTVCAAVLTVVMA----QRYMETSKVMPAGIVAGISALMTGF 115 (132)
Q Consensus 68 ~~~~~~~~~v~~~~S~~L~~~m~----~R~~kt~K~mPaGlva~ls~~~~~~ 115 (132)
.+|-.++++..=.||.++..++. =||..|+ |+|++..+=+.+.+-
T Consensus 40 k~~~~a~klssefIsGilVGa~iG~llD~~agTs---PwglIv~lllGf~AG 88 (116)
T COG5336 40 KGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTS---PWGLIVFLLLGFGAG 88 (116)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHH
Confidence 45556666666556666555543 3777775 777766555444433
No 29
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=31.03 E-value=3.4e+02 Score=23.18 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 28 ~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.|=+++.+..|..+..+|...+..-||+
T Consensus 60 lPRil~a~l~G~~LalsG~llQ~l~rNp 87 (330)
T PRK10440 60 LPRVLMALLIGAALGVSGAIFQSLMRNP 87 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4668899999999999999988777776
No 30
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=31.03 E-value=2.5e+02 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHhhhhhhhhhcCChhhhHHHHHHHHH
Q 032837 12 LILIGGGIVGFAKKGSTASLAGGVGTGLL 40 (132)
Q Consensus 12 ~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~l 40 (132)
++++++|+..+.++ +..+...|+..|.+
T Consensus 150 ~vLfl~a~~~~~~~-~~~~~~~g~~~G~~ 177 (306)
T PF03239_consen 150 AVLFLAALAASLRK-DAASILLGAILGIA 177 (306)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHHHH
Confidence 45777888888876 66666666666654
No 31
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=30.81 E-value=44 Score=27.46 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHhhhhhhhhhcCChhhhHHHHHHHHH
Q 032837 14 LIGGGIVGFAKKGSTASLAGGVGTGLL 40 (132)
Q Consensus 14 l~~GGi~Gy~k~gS~~SLiaGv~~G~l 40 (132)
=++||++||+. +.-+..+.|+.+|-+
T Consensus 6 ki~g~~~G~~~-~g~~Ga~~G~~~Gh~ 31 (267)
T PRK09430 6 KILGFAFGFLF-GGFFGALLGLLIGHM 31 (267)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHhH
Confidence 36899999998 446666777666663
No 32
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=28.77 E-value=3.6e+02 Score=22.83 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=24.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 27 S~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
..|=+++.+..|+.+..+|...+...||+
T Consensus 51 RlPR~l~a~l~G~~LavsG~~lQ~l~rNp 79 (318)
T PRK09777 51 RLPRLLLALFVGAALAVSGVLVQGIVRNP 79 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34778899999999999999988877776
No 33
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=28.68 E-value=2.4e+02 Score=20.83 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=23.0
Q ss_pred HHhhhCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Q 032837 92 RYMETSKVMPAGIVAGISALMTGFYLYKIATGGNH 126 (132)
Q Consensus 92 R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g~n~ 126 (132)
...+..+.+-. .+-.++++.+.+.+++..+...+
T Consensus 50 ~l~~~~~~~~~-~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 50 ALLKSSPWLFM-ILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHhChHHHH-HHHHHHHHHHHHHHHHHHhcccC
Confidence 33343333333 68888999999999998865553
No 34
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=28.68 E-value=3.7e+02 Score=22.93 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=25.8
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 25 ~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.-..|-+++++..|..+..+|...++..||+
T Consensus 58 ~~RLPR~l~ailvG~~LavaG~llQ~l~rNp 88 (335)
T PRK10441 58 DARLPRTLAGLLAGGALGLAGALMQTLTRNP 88 (335)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445778999999999999999988877776
No 35
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=28.49 E-value=96 Score=24.55 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=21.4
Q ss_pred hhhhhhhhhcCCh----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 16 GGGIVGFAKKGST----ASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 16 ~GGi~Gy~k~gS~----~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.||++|-+..+.. ..=..+++..+++...+|-.+|.|+++
T Consensus 12 ~ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~ 55 (188)
T PF04391_consen 12 AGGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQN 55 (188)
T ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3888887755443 222233333344555566666666554
No 36
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=2.4e+02 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Q 032837 31 LAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIV 63 (132)
Q Consensus 31 LiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~ 63 (132)
+|+|+..|+. .||+.-+. .+ .+.|+..
T Consensus 52 fIsGilVGa~---iG~llD~~--ag-TsPwglI 78 (116)
T COG5336 52 FISGILVGAG---IGWLLDKF--AG-TSPWGLI 78 (116)
T ss_pred HHHHHHHHHH---HHHHHHHh--cC-CCcHHHH
Confidence 7899999985 47776442 23 3445544
No 37
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=27.45 E-value=60 Score=25.84 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 032837 101 PAGIVAGISALMTGFYLYKIAT 122 (132)
Q Consensus 101 PaGlva~ls~~~~~~y~~~l~~ 122 (132)
=.|+|.+|++...+|++||..+
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhcc
Confidence 4579999999999999998753
No 38
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=26.89 E-value=2.7e+02 Score=24.45 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 032837 9 PYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEK-KKNSYFAIVIETEFRFRAEFYAVDTVCAAVLTV 87 (132)
Q Consensus 9 ~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~L~~ 87 (132)
..+.|+.+|+=+=.-|.-=..++++|+..|.++...-+.+.....+ .+.+-+...+. ++..+++.++.++++..
T Consensus 194 ~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~~v~~~dIP~l~i~-----~~~~~~i~lvm~vIi~~ 268 (349)
T COG3949 194 AVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLINLSLIALYDKVVNYDIPLLTIA-----KNFSPLIGLVMSVIIWL 268 (349)
T ss_pred HhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhcchhhccCCcHHHHH-----HhccHHHHHHHHHHHHH
Confidence 4566777775554444444467777888877776555444433332 22222332322 22224555666666554
Q ss_pred HH
Q 032837 88 VM 89 (132)
Q Consensus 88 ~m 89 (132)
.+
T Consensus 269 ~I 270 (349)
T COG3949 269 EI 270 (349)
T ss_pred HH
Confidence 43
No 39
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=26.38 E-value=2.4e+02 Score=20.07 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=24.4
Q ss_pred hhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 032837 19 IVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNS 58 (132)
Q Consensus 19 i~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~ 58 (132)
+..|+....+-...-|.+.|. +.+.-.++.|++|++.
T Consensus 36 v~sy~~~~~~l~yaI~aVvgl---IGai~VY~k~~~Gd~d 72 (98)
T PF13572_consen 36 VTSYFDPVTKLMYAIGAVVGL---IGAIRVYIKWNNGDQD 72 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCc
Confidence 344555555555555656665 5678899999998643
No 40
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=25.29 E-value=2.9e+02 Score=20.53 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchHHHHHH-------------HHHHHHHHHHHHhcCCCC
Q 032837 79 TVCAAVLTVVMAQRYMETSKVMPAGIVAGI-------------SALMTGFYLYKIATGGNH 126 (132)
Q Consensus 79 ~~~S~~L~~~m~~R~~kt~K~mPaGlva~l-------------s~~~~~~y~~~l~~g~n~ 126 (132)
+.++.-|+..+.+- ++|++++..+ .++...-+.||..+|.+|
T Consensus 33 L~vatPLfvifSPV------lVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~ 87 (118)
T PF01277_consen 33 LAVATPLFVIFSPV------LVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHP 87 (118)
T ss_pred HHHHhhHHHHHhhH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence 55555555555443 4566544332 223445677888888763
No 41
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=24.82 E-value=2.2e+02 Score=21.70 Aligned_cols=48 Identities=19% Similarity=0.545 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcC
Q 032837 75 YAVDTVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATG 123 (132)
Q Consensus 75 ~~v~~~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g 123 (132)
+++..+-+.++....+.+....-.+.|+ ++..+......++..+-.-|
T Consensus 67 Y~iGi~fa~~~~~l~g~~wl~~Pt~~~a-li~G~~tvl~p~~imqP~lG 114 (150)
T PF11158_consen 67 YAIGIAFAVLYALLWGPGWLSRPTLLPA-LIFGLVTVLAPFFIMQPALG 114 (150)
T ss_pred HHHHHHHHHHHHHHHhhccccCCchHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5666777888888888888877789999 55555566667777775433
No 42
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.33 E-value=1e+02 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032837 32 AGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 32 iaGv~~G~ll~~ag~l~~ 49 (132)
+.|+++++++.++|.++.
T Consensus 16 igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 568888888888888765
No 43
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=23.96 E-value=5.9e+02 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=26.8
Q ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 23 AKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 23 ~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
+..-..|=+++.+..|+.+..+|...++..||+
T Consensus 393 ~~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNp 425 (668)
T PRK10577 393 LLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNP 425 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444456778899999999999999998887776
No 44
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=23.80 E-value=4.6e+02 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=25.5
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 25 KGSTASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 25 ~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.-..|=+++++..|+.+..+|...+...||+
T Consensus 51 ~~RlPRil~a~lvG~~La~sG~i~Q~l~rNp 81 (325)
T TIGR03869 51 DLRLPRVLTAAAVGAGLAIAGAVMQSLTRNP 81 (325)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445778999999999999999988777776
No 45
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=23.61 E-value=6.2e+02 Score=23.77 Aligned_cols=44 Identities=18% Similarity=-0.007 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcCCC----CCCCCC
Q 032837 79 TVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN----HIPAKA 131 (132)
Q Consensus 79 ~~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g~n----~~p~~~ 131 (132)
+.+|..|+..|..|...|+ +.|-.=..-.+|+...-+. -||.|+
T Consensus 621 l~VSF~lAl~vAlRSr~t~---------i~s~r~I~~~VW~~Ik~~PL~Lf~P~a~~ 668 (677)
T COG4389 621 LCVSFSLALFVALRSRGTK---------IGSIRNIIKSVWNQIKSNPLILFLPPAKE 668 (677)
T ss_pred HHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHhcCCcEEEcCCCcC
Confidence 6788899999999988776 2344444555777654433 455554
No 46
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=23.39 E-value=4.1e+02 Score=21.60 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh-ccc
Q 032837 35 VGTGLLLVLAGYLSLKAFEK-KKN 57 (132)
Q Consensus 35 v~~G~ll~~ag~l~~~~~~~-~~~ 57 (132)
++.+..++.+|..-.|+|++ ++|
T Consensus 72 ~imal~li~~Gi~ti~~W~~~~~~ 95 (224)
T PF09930_consen 72 LIMALLLIYAGIYTIKKWKKSGKD 95 (224)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCC
Confidence 34567777889988899955 666
No 47
>COG3300 MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]
Probab=21.99 E-value=4.7e+02 Score=21.76 Aligned_cols=40 Identities=28% Similarity=0.184 Sum_probs=21.9
Q ss_pred ccccchHHHHHHHHhhhhhh----hhhcCChhhhHHHHHHHHHH
Q 032837 2 HDFCFTIPYGLILIGGGIVG----FAKKGSTASLAGGVGTGLLL 41 (132)
Q Consensus 2 hDfc~~~~yg~Ll~~GGi~G----y~k~gS~~SLiaGv~~G~ll 41 (132)
+|+-++..=-.+-+.+-..+ .-+-+....++.|+..|+..
T Consensus 75 YDp~~T~lSl~iAv~~s~~al~vs~~~~~~~~~l~Gg~llGlgI 118 (236)
T COG3300 75 YDPFLTGLSLLIAVAGSAAALWVSAARLRLYRLLVGGLLLGLGI 118 (236)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhH
Confidence 46655443333333333333 34556667888888887743
No 48
>COG5305 Predicted membrane protein [Function unknown]
Probab=20.81 E-value=5.2e+02 Score=23.94 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=54.1
Q ss_pred hhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--------hhhhhhhhhHHHHHHHHHHHHHHH
Q 032837 20 VGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETE--------FRFRAEFYAVDTVCAAVLTVVMAQ 91 (132)
Q Consensus 20 ~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~S~~L~~~m~~ 91 (132)
-.+.-.||.+.|+.+.+.++++...=.+.-+ +...+.-...|. +.=|+-..+++..+-+..+.++..
T Consensus 114 ~s~~~~Rsls~L~~~~ai~~~y~l~r~l~~~-----~~a~la~~~~AisP~~i~~~qe~R~y~L~~~~~lis~~~Ll~ai 188 (552)
T COG5305 114 NSLLASRSLSALLSALAIPLVYWLGRELFGS-----TTALLAAALMAISPFHIFYSQEARSYALAVATTLISATLLLRAI 188 (552)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566778999999988887765432111110 000111111111 111666677777777888888888
Q ss_pred HHhhhCCCcc----hHHHHHHHHHHHHHHHHHH
Q 032837 92 RYMETSKVMP----AGIVAGISALMTGFYLYKI 120 (132)
Q Consensus 92 R~~kt~K~mP----aGlva~ls~~~~~~y~~~l 120 (132)
|.-.++|.-| -++...+|...-.++++.+
T Consensus 189 ~~~~~r~~l~~wliy~~~~~lsllt~~f~~~~v 221 (552)
T COG5305 189 RLPTSRKLLPGWLIYALLLILSLLTHYFFALTV 221 (552)
T ss_pred cCcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999666 2233444444444555443
No 49
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=20.80 E-value=3e+02 Score=19.16 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhc
Q 032837 80 VCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIAT 122 (132)
Q Consensus 80 ~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~ 122 (132)
+.|.-....+..|...++..|--++-=+++..|..+=+|++++
T Consensus 18 v~~lG~wfhiVarlVy~~P~mA~~laeliav~lVl~G~YRiLd 60 (80)
T TIGR02741 18 VFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLD 60 (80)
T ss_pred hhHhhHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4556677788889998888888877778888888888888763
No 50
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=20.65 E-value=3e+02 Score=19.09 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=21.1
Q ss_pred HHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 032837 14 LIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSY 59 (132)
Q Consensus 14 l~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~ 59 (132)
..++.++|+....-. .|.+.|.++...+.. ++.+|+|+...
T Consensus 26 ~~~~~~~Gi~~~~~l----~g~~lg~~~~~~~~~-lrr~K~g~~~~ 66 (95)
T TIGR02762 26 GATLFGIGILSGKAL----IGLILGAAVMLIWKR-LRRIKGGEGEN 66 (95)
T ss_pred HHHHHHHHHHHhhHH----HHHHHHHHHHHHHHH-HHHHHcCCChh
Confidence 445556666654333 444444444333333 66778876543
No 51
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=20.57 E-value=2.8e+02 Score=19.32 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhc
Q 032837 80 VCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIAT 122 (132)
Q Consensus 80 ~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~ 122 (132)
+.|.-....+..|...++..|--++-=+++..|..+=+|++++
T Consensus 18 v~~lG~wfhiVarlVy~~PemA~~laeiiav~lVl~GgYRild 60 (80)
T PRK13727 18 VFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLD 60 (80)
T ss_pred hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4456677788889998888888888788888888888888763
No 52
>COG4872 Predicted membrane protein [Function unknown]
Probab=20.53 E-value=4.7e+02 Score=23.26 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=7.3
Q ss_pred HHHhhhCCCcchH
Q 032837 91 QRYMETSKVMPAG 103 (132)
Q Consensus 91 ~R~~kt~K~mPaG 103 (132)
.|=-+++|++|+.
T Consensus 96 wreqq~~~~lgeA 108 (394)
T COG4872 96 WREQQSKRFLGEA 108 (394)
T ss_pred HHHhhcccchhhH
Confidence 3444556677763
No 53
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=20.51 E-value=1.2e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=18.5
Q ss_pred HhhhhhhhhhcCChhhhHHHHHHHHHHH
Q 032837 15 IGGGIVGFAKKGSTASLAGGVGTGLLLV 42 (132)
Q Consensus 15 ~~GGi~Gy~k~gS~~SLiaGv~~G~ll~ 42 (132)
.++|++.|+++|| |-.+.|+..+..+.
T Consensus 85 vi~~~v~y~~TkN-~~~~~Gf~i~iIft 111 (119)
T PF05513_consen 85 VIVGVVMYFKTKN-PMVFGGFAIVIIFT 111 (119)
T ss_pred HHHHHHHHHhccC-hHHhhhhHHhHhHH
Confidence 3567788888999 44677776665543
No 54
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=20.23 E-value=5.3e+02 Score=21.72 Aligned_cols=38 Identities=8% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHH
Q 032837 79 TVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFY 116 (132)
Q Consensus 79 ~~~S~~L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y 116 (132)
+.+++.++.....|+.|++++.|=+..-++=+.+...+
T Consensus 229 AFvv~~~~I~~ll~~i~~~~~~~F~~Yrivlgi~~l~~ 266 (270)
T COG1968 229 AFVVSLIAIKFLLRFIKRHSFIPFAIYRIVLGIVVLVL 266 (270)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeehHHHHHHHHHHHHHH
Confidence 45666677778889999999999887766655554433
Done!