Query 032837
Match_columns 132
No_of_seqs 102 out of 334
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.9 2.2E-29 7.5E-34 182.1 0.0 97 5-121 12-108 (108)
2 2los_A Transmembrane protein 1 99.9 1.3E-28 4.6E-33 181.1 0.0 99 5-123 21-119 (121)
3 2lx0_A Membrane fusion protein 38.5 43 0.0015 18.4 3.4 22 101-122 9-30 (32)
4 3rlb_A THIT; S-component, ECF 38.1 1.3E+02 0.0043 22.7 8.8 79 10-93 95-183 (192)
5 4g1u_A Hemin transport system 24.9 2.6E+02 0.0089 22.9 7.5 29 27-55 78-106 (357)
6 2ks1_B Epidermal growth factor 23.0 87 0.003 18.4 3.1 16 26-41 8-23 (44)
7 2l2t_A Receptor tyrosine-prote 21.1 1.4E+02 0.0047 17.6 4.1 16 26-41 7-22 (44)
8 2jp3_A FXYD domain-containing 19.8 87 0.003 20.3 2.8 18 32-49 19-36 (67)
9 2jo1_A Phospholemman; FXYD1, N 19.4 89 0.0031 20.5 2.8 18 32-49 18-35 (72)
10 2zxe_G FXYD10, phospholemman-l 18.9 92 0.0031 20.5 2.8 18 32-49 21-38 (74)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.91 E-value=2.2e-29 Score=182.09 Aligned_cols=97 Identities=28% Similarity=0.499 Sum_probs=87.1
Q ss_pred cchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHH
Q 032837 5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAV 84 (132)
Q Consensus 5 c~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~ 84 (132)
.++++|++++.+||++||+|+||+|||++|+.+|+++ ++.+++.|+|++ +++++ +++|++
T Consensus 12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll---~~~~~~~~~~~~----~~~l~-------------l~~S~~ 71 (108)
T 2loo_A 12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLA---GYGAYRVSNDKR----DVKVS-------------LFTAFF 71 (108)
Confidence 4799999999999999999999999999999999976 444555676653 67766 999999
Q ss_pred HHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHh
Q 032837 85 LTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIA 121 (132)
Q Consensus 85 L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~ 121 (132)
|+.+|+.||.||+|+||+|+++++|++|++||.|+++
T Consensus 72 L~~~m~~R~~~t~K~mPaGl~a~lS~~m~~~y~~~l~ 108 (108)
T 2loo_A 72 LATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 108 (108)
Confidence 9999999999999999999999999999999999874
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-28 Score=181.13 Aligned_cols=99 Identities=30% Similarity=0.482 Sum_probs=87.7
Q ss_pred cchHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHhhhhhhhhhHHHHHHHH
Q 032837 5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETEFRFRAEFYAVDTVCAAV 84 (132)
Q Consensus 5 c~~~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~ll~~ag~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~S~~ 84 (132)
.++++||+|+.+||++||+|+||+|||++|+++|+++..++ ++.|+|+++ .+++ +++|++
T Consensus 21 ~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a---~~~~~~~~~----~~l~-------------l~~S~~ 80 (121)
T 2los_A 21 WFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGA---YQLSQDPRN----VWVF-------------LATSGT 80 (121)
Confidence 48999999999999999999999999999999999765544 456777643 3444 889999
Q ss_pred HHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHhcC
Q 032837 85 LTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATG 123 (132)
Q Consensus 85 L~~~m~~R~~kt~K~mPaGlva~ls~~~~~~y~~~l~~g 123 (132)
|+++|+.||.||+|+||+|+++++|++|++||.|++++.
T Consensus 81 L~~~mg~R~~~t~K~mPaGlva~lS~~m~~~~~~~ll~~ 119 (121)
T 2los_A 81 LAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNR 119 (121)
Confidence 999999999999999999999999999999999999873
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=38.51 E-value=43 Score=18.44 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 032837 101 PAGIVAGISALMTGFYLYKIAT 122 (132)
Q Consensus 101 PaGlva~ls~~~~~~y~~~l~~ 122 (132)
-+|+++++..+..+|..++.+.
T Consensus 9 iaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888888888888887663
No 4
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=38.11 E-value=1.3e+02 Score=22.66 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhhhhhcCCh----hhhHHHHHHHHHHHH-----HHHHHHHHhh-hcccchHHHHHHHHhhhhhhhhhHHH
Q 032837 10 YGLILIGGGIVGFAKKGST----ASLAGGVGTGLLLVL-----AGYLSLKAFE-KKKNSYFAIVIETEFRFRAEFYAVDT 79 (132)
Q Consensus 10 yg~Ll~~GGi~Gy~k~gS~----~SLiaGv~~G~ll~~-----ag~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (132)
|-.-...-|+.|++.++.+ .+.+.|...|.+.-. +|+.....|- +|.|..++.. -|.-.+-++..
T Consensus 95 y~laf~~~GlaG~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl-----~~N~~~~l~~~ 169 (192)
T 3rlb_A 95 YLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSL-----AVNGISGILTA 169 (192)
T ss_dssp HTHHHHHGGGGGGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHH-----HHHHHHHHHHH
Confidence 3344456678888876643 445566666655444 5554322221 1222222111 12333455556
Q ss_pred HHHHHHHHHHHHHH
Q 032837 80 VCAAVLTVVMAQRY 93 (132)
Q Consensus 80 ~~S~~L~~~m~~R~ 93 (132)
.++.+++....+|.
T Consensus 170 ii~~iv~~lL~k~~ 183 (192)
T 3rlb_A 170 IAAFVILIIFVKKF 183 (192)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666655543
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=24.85 E-value=2.6e+02 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 27 STASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 27 S~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
..|=.++++..|+.+..+|...+...|||
T Consensus 78 RlPR~l~a~lvGaaLavsG~~~Q~~~rNP 106 (357)
T 4g1u_A 78 RLPRVLLAVVVGCALAVSGTIMQGLFRNP 106 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34778889999999999999988777776
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.02 E-value=87 Score=18.44 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=9.4
Q ss_pred CChhhhHHHHHHHHHH
Q 032837 26 GSTASLAGGVGTGLLL 41 (132)
Q Consensus 26 gS~~SLiaGv~~G~ll 41 (132)
.+++++.+|++-|.+.
T Consensus 8 s~~~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 8 PKIPSIATGMVGALLL 23 (44)
T ss_dssp SCSSSSTHHHHHHHHH
T ss_pred CCcceEEeehhHHHHH
Confidence 4556666666665544
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.14 E-value=1.4e+02 Score=17.62 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=8.1
Q ss_pred CChhhhHHHHHHHHHH
Q 032837 26 GSTASLAGGVGTGLLL 41 (132)
Q Consensus 26 gS~~SLiaGv~~G~ll 41 (132)
.+++++.+|++-|.+.
T Consensus 7 s~~~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFI 22 (44)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHH
Confidence 3445555555554543
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.77 E-value=87 Score=20.27 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032837 32 AGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 32 iaGv~~G~ll~~ag~l~~ 49 (132)
+.|+++++++.+.|++++
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 568888888888888765
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=19.39 E-value=89 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032837 32 AGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 32 iaGv~~G~ll~~ag~l~~ 49 (132)
+.|+++++++.+.|++++
T Consensus 18 iGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 468888888888887665
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.91 E-value=92 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032837 32 AGGVGTGLLLVLAGYLSL 49 (132)
Q Consensus 32 iaGv~~G~ll~~ag~l~~ 49 (132)
+.|+++++++.+.|++++
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 568899999999998776
Done!