Query 032837
Match_columns 132
No_of_seqs 102 out of 334
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 10:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 47.0 20 0.0015 27.0 6.2 28 28-55 57-84 (324)
2 d1v54b2 f.17.2.1 (B:1-90) Mito 27.4 14 0.001 22.9 1.9 26 2-27 24-49 (90)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 11.4 2E+02 0.015 20.5 5.5 17 39-55 10-26 (248)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.3 41 0.003 21.1 0.9 19 2-20 35-53 (107)
5 d1ppjd2 f.23.11.1 (D:196-241) 5.6 2E+02 0.014 15.5 2.3 9 104-112 13-21 (46)
6 d1v54c_ f.25.1.1 (C:) Mitochon 5.6 3.8E+02 0.027 18.7 4.6 33 8-40 18-50 (259)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 5.6 1.2E+02 0.0087 18.3 1.5 9 80-88 77-85 (100)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 4.2 2.6E+02 0.019 13.5 3.3 10 46-55 15-24 (27)
9 d2e74d2 f.23.12.1 (D:12-45) IS 3.8 3.1E+02 0.023 13.8 2.3 13 32-44 16-28 (34)
10 d1ofcx3 a.187.1.1 (X:697-798) 3.6 1.4E+02 0.0099 18.9 0.6 6 1-6 29-34 (102)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=47.02 E-value=20 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 032837 28 TASLAGGVGTGLLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 28 ~~SLiaGv~~G~ll~~ag~l~~~~~~~~ 55 (132)
.|-+++++..|+.+..+|...+...||+
T Consensus 57 lPR~l~a~l~Ga~La~sG~~lQ~~~rNp 84 (324)
T d1l7va_ 57 LPRTLAVLLVGAALAISGAVMQALFENP 84 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999998887776
No 2
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.43 E-value=14 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=17.9
Q ss_pred ccccchHHHHHHHHhhhhhhhhhcCC
Q 032837 2 HDFCFTIPYGLILIGGGIVGFAKKGS 27 (132)
Q Consensus 2 hDfc~~~~yg~Ll~~GGi~Gy~k~gS 27 (132)
||+++.+....+..+..++.+...+.
T Consensus 24 Hd~~m~i~~~I~~~V~~~~~~~~~~~ 49 (90)
T d1v54b2 24 HDHTLMIVFLISSLVLYIISLMLTTK 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777777776666666655444
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=11.40 E-value=2e+02 Score=20.47 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhc
Q 032837 39 LLLVLAGYLSLKAFEKK 55 (132)
Q Consensus 39 ~ll~~ag~l~~~~~~~~ 55 (132)
++-.+.+|+....+.++
T Consensus 10 l~~a~~~~~~~~~~~~~ 26 (248)
T d2r6gf1 10 LLGLLVGYLVVLMYAQG 26 (248)
T ss_dssp HHHHHHHHTHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 33334455544445443
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.32 E-value=41 Score=21.11 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=8.6
Q ss_pred ccccchHHHHHHHHhhhhh
Q 032837 2 HDFCFTIPYGLILIGGGIV 20 (132)
Q Consensus 2 hDfc~~~~yg~Ll~~GGi~ 20 (132)
||+-+.+....++.+.|++
T Consensus 35 h~~v~~i~~~I~~~V~~~~ 53 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLL 53 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4554444444444444333
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.59 E-value=2e+02 Score=15.53 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 032837 104 IVAGISALM 112 (132)
Q Consensus 104 lva~ls~~~ 112 (132)
++..++.+.
T Consensus 13 v~~~l~~l~ 21 (46)
T d1ppjd2 13 MLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.59 E-value=3.8e+02 Score=18.67 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHH
Q 032837 8 IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLL 40 (132)
Q Consensus 8 ~~yg~Ll~~GGi~Gy~k~gS~~SLiaGv~~G~l 40 (132)
...+++...-|...|+...+...++.|+..-..
T Consensus 18 ~s~~~~~~~~g~~~~~~~~~~~~~~~gl~~~~~ 50 (259)
T d1v54c_ 18 GALSALLMTSGLTMWFHFNSMTLLMIGLTTNML 50 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777888888889998888888887665443
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.57 E-value=1.2e+02 Score=18.32 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 032837 80 VCAAVLTVV 88 (132)
Q Consensus 80 ~~S~~L~~~ 88 (132)
++..++...
T Consensus 77 viP~lILi~ 85 (100)
T d3dtub2 77 IVPIVILVA 85 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.22 E-value=2.6e+02 Score=13.46 Aligned_cols=10 Identities=10% Similarity=0.580 Sum_probs=4.9
Q ss_pred HHHHHHhhhc
Q 032837 46 YLSLKAFEKK 55 (132)
Q Consensus 46 ~l~~~~~~~~ 55 (132)
|..+|.++++
T Consensus 15 ~aayqqykrp 24 (27)
T d2e74g1 15 YAAYQQYKRP 24 (27)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhcCC
Confidence 3445555554
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.82 E-value=3.1e+02 Score=13.84 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 032837 32 AGGVGTGLLLVLA 44 (132)
Q Consensus 32 iaGv~~G~ll~~a 44 (132)
+.|+..|+++=+.
T Consensus 16 ~tg~alg~lypvv 28 (34)
T d2e74d2 16 VTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHH
Confidence 3455555555433
No 10
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.58 E-value=1.4e+02 Score=18.92 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=0.0
Q ss_pred Cccccc
Q 032837 1 MHDFCF 6 (132)
Q Consensus 1 ~hDfc~ 6 (132)
||||.|
T Consensus 29 ~~DfQF 34 (102)
T d1ofcx3 29 VQDFQF 34 (102)
T ss_dssp CCGGGC
T ss_pred cccccc
Done!