BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032838
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AFR6|YCIO_SHIFL Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1
Length = 206
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ R
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55
>sp|P0AFR4|YCIO_ECOLI Uncharacterized protein YciO OS=Escherichia coli (strain K12)
GN=yciO PE=1 SV=1
Length = 206
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ R
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55
>sp|P0AFR5|YCIO_ECOL6 Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yciO PE=3 SV=1
Length = 206
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ R
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55
>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain YJ016) GN=rimN PE=3 SV=2
Length = 186
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
L+ VV+ LK+G V PT+ ++ + CD + AIERL
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERL 41
>sp|Q8DDD6|RIMN_VIBVU tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain CMCP6) GN=rimN PE=3 SV=1
Length = 186
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
L+ VV+ LK+G V PT+ ++ + CD + AIERL
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERL 41
>sp|B0TLD6|RIMN_SHEHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella halifaxensis (strain HAW-EB4) GN=rimN PE=3
SV=1
Length = 187
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
V EL+++G V PT+ +Y + CD + AIERL
Sbjct: 9 VAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERL 42
>sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1198 PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
P + + VE+L++G V V PTD+ YA+ C + A++R+
Sbjct: 9 PENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRI 53
>sp|Q3KKE2|RIMN_PSEPF tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas fluorescens (strain Pf0-1) GN=rimN PE=3
SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+SW+++ ++ GAV PT+ ++ + CD + A++RL
Sbjct: 2 VNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRL 43
>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus
GN=Yrdc PE=2 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 82 VEADPSGADSWK--LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
VEA W L V L+ GAV +PTDTLY + C +A+ + R
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYR 109
>sp|A4XNB6|RIMN_PSEMY tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas mendocina (strain ymp) GN=rimN PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
A +W+++ ++ EG V PT+ ++ + CD + A++RL
Sbjct: 2 ASNWQVQQAARVVCEGGVIAYPTEAVWGLGCDPWNEVAVDRL 43
>sp|Q4KKQ6|RIMN_PSEF5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=rimN PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ ++ GAV PT+ ++ + CD + A++RL
Sbjct: 4 SWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRL 43
>sp|Q9CLG4|RIMN_PASMU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pasteurella multocida (strain Pm70) GN=rimN PE=3 SV=1
Length = 183
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
++ +VE LK+ V PT+ ++ + C+ S SA+++L
Sbjct: 2 NIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKL 39
>sp|A5F2P8|SYM_VIBC3 Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|Q9KT69|SYM_VIBCH Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|B1JPY8|SYM_YERPY Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=metG PE=3 SV=1
Length = 675
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVIAAGPGGSDIFLLSP 664
>sp|Q88B46|RIMN_PSESM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=rimN PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ + ++ GAV PT+ ++ + CD A+ RL
Sbjct: 4 SWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRL 43
>sp|Q1I2G9|RIMN_PSEE4 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas entomophila (strain L48) GN=rimN PE=3
SV=1
Length = 185
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ +K GAV PT+ ++ + CD + A+ RL
Sbjct: 4 SWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRL 43
>sp|A5N3H9|ATPA_CLOK5 ATP synthase subunit alpha OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=atpA PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P+R Y F L+ A D G S P++E L
Sbjct: 270 YRAMSLLLRRPPRREAYPGDVFYLHSRLLERAAKLSDKLGGGSLTALPIIETLAGDVTAY 329
Query: 109 IPTDTL 114
IPT+ +
Sbjct: 330 IPTNVI 335
>sp|Q3IDH7|RIMN_PSEHT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rimN PE=3 SV=1
Length = 187
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+D + + L +G V + PT+ +Y + CD + A+ERL
Sbjct: 2 SDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERL 43
>sp|A7MPF3|RIMN_CROS8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rimN
PE=3 SV=1
Length = 190
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+V++LK+ V PT+ ++ + CD S +A++RL
Sbjct: 13 IVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRL 46
>sp|Q48QH8|RIMN_PSE14 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=rimN PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ + ++ GAV PT+ ++ + CD A+ RL
Sbjct: 4 SWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRL 43
>sp|Q3J7C4|RIMN_NITOC tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=rimN PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+W++ +++ G V PT+ ++ + CD +AIER+
Sbjct: 5 NWRVRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERI 44
>sp|Q65WC1|RIMN_MANSM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rimN PE=3 SV=1
Length = 183
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+L +VE LK+ V PT+ ++ + C+ S SA+E+L
Sbjct: 2 ELAQIVERLKKNEVVAYPTEAVFGLGCNPNSKSAVEKL 39
>sp|A8FP81|RIMN_SHESH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sediminis (strain HAW-EB3) GN=rimN PE=3
SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
V E++++G V PT+ +Y + CD + AI RL
Sbjct: 9 VQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRL 42
>sp|Q500S6|RIMN_PSEU2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=rimN PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ + ++ GAV PT+ ++ + CD A+ RL
Sbjct: 4 SWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRL 43
>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC
PE=2 SV=1
Length = 276
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 88 GADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
G + L V L+ GAV +PTDTLY + C A+ + R
Sbjct: 62 GGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYR 106
>sp|Q9Z689|ATPA_CLOAB ATP synthase subunit alpha OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=atpA PE=3 SV=1
Length = 505
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A S G S P++E L G
Sbjct: 270 YRTMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSQKLGGGSITALPIIETLAGDVAGY 329
Query: 109 IPTDTL 114
IPT+ +
Sbjct: 330 IPTNVI 335
>sp|A4VFI1|RIMN_PSEU5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas stutzeri (strain A1501) GN=rimN PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
W+++ V +++ G V PT+ ++ + CD A+ RL
Sbjct: 4 DWRVQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRL 43
>sp|Q66C72|SYM_YERPS Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMTAGPGGSDIFLLSP 664
>sp|A4TKM9|SYM_YERPP Methionine--tRNA ligase OS=Yersinia pestis (strain Pestoides F)
GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q1CGU4|SYM_YERPN Methionine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q8ZG01|SYM_YERPE Methionine--tRNA ligase OS=Yersinia pestis GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|B2JZK3|SYM_YERPB Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q1C9T8|SYM_YERPA Methionine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|A7FJJ6|SYM_YERP3 Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q1H4G9|RIMN_METFK tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875) GN=rimN PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
L+ G V PT++ + + CD +H A++RL R
Sbjct: 8 HFLRSGGVIAYPTESCFGLGCDPTNHRALKRLLR 41
>sp|B1J499|RIMN_PSEPW tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas putida (strain W619) GN=rimN PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
SW+++ ++ GAV PT+ ++ + CD + A+ RL
Sbjct: 4 SWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRL 43
>sp|Q7VNS3|RIMN_HAEDU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=rimN PE=3 SV=1
Length = 184
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
L V+ELLK+ V PT++++ + C+ + AI +L
Sbjct: 3 NLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQL 40
>sp|A9KH21|RIMN_COXBN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rimN
PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
V+ L++G V PT+ +Y + CD +H A+ +L
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQL 44
>sp|Q2SQW8|RIMN_HAHCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Hahella chejuensis (strain KCTC 2396) GN=rimN PE=3
SV=1
Length = 184
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
+W ++ V +L G V PT+ ++ + CD A+ R+
Sbjct: 3 AWFIQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRI 42
>sp|A9N9G8|RIMN_COXBR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=rimN PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
V+ L++G V PT+ +Y + CD +H A+ +L
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQL 44
>sp|Q83AA2|RIMN_COXBU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=rimN PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 98 VELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
V+ L++G V PT+ +Y + CD +H A+ +L
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQL 44
>sp|Q0I1B6|RIMN_HAES1 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Haemophilus somnus (strain 129Pt) GN=rimN PE=3 SV=2
Length = 183
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
++E LK+ V PT+ ++ + C+ S SA+E+L
Sbjct: 6 IIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKL 39
>sp|B0UWV9|RIMN_HAES2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Haemophilus somnus (strain 2336) GN=rimN PE=3 SV=1
Length = 183
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
++E LK+ V PT+ ++ + C+ S SA+E+L
Sbjct: 6 IIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKL 39
>sp|B6EIY5|SYM_ALISL Methionine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=metG PE=3 SV=1
Length = 686
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ +P ++ ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 623 FSGIKSAYTPEELVGKHTVMVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 674
Query: 96 P 96
P
Sbjct: 675 P 675
>sp|Q8Z1W6|RIMN_SALTI tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella typhi GN=rimN PE=3 SV=1
Length = 190
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
VV+LL + V PT+ ++ + CD S +A+ RL
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRL 46
>sp|Q7MM14|SYM_VIBVY Methionine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=metG
PE=3 SV=1
Length = 690
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G ++ +P +Y ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 627 FSGIKAAYNPEDLVGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 678
Query: 96 P 96
P
Sbjct: 679 P 679
>sp|Q5PIS8|RIMN_SALPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=rimN PE=3 SV=1
Length = 190
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 97 VVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130
VV+LL + V PT+ ++ + CD S +A+ RL
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRL 46
>sp|Q8D8F2|SYM_VIBVU Methionine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=metG
PE=3 SV=2
Length = 690
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G ++ +P +Y ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 627 FSGIKAAYNPEDLVGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 678
Query: 96 P 96
P
Sbjct: 679 P 679
>sp|A8GYH9|RIMN_SHEPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=rimN PE=3 SV=1
Length = 187
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 99 ELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
EL+++G V PT+ +Y + CD + AI +L +
Sbjct: 11 ELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQ 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,655,814
Number of Sequences: 539616
Number of extensions: 2114551
Number of successful extensions: 5655
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5601
Number of HSP's gapped (non-prelim): 76
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)