Query 032838
Match_columns 132
No_of_seqs 192 out of 1026
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11630 hypothetical protein; 99.6 2.7E-16 5.8E-21 124.5 5.1 55 78-132 1-55 (206)
2 COG0009 SUA5 Putative translat 99.5 4.5E-15 9.7E-20 119.5 5.2 53 80-132 2-54 (211)
3 TIGR00057 Sua5/YciO/YrdC/YwlC 99.5 1.4E-14 2.9E-19 113.9 4.3 49 84-132 1-49 (201)
4 PRK10634 tRNA(ANN) t(6)A37 thr 99.5 4.5E-14 9.8E-19 110.6 4.2 44 89-132 5-48 (190)
5 TIGR00143 hypF [NiFe] hydrogen 98.8 5.3E-09 1.2E-13 96.3 4.5 42 91-132 162-203 (711)
6 KOG3051 RNA binding/translatio 96.8 0.00037 8.1E-09 58.7 0.4 41 92-132 17-57 (261)
7 COG0068 HypF Hydrogenase matur 89.5 0.71 1.5E-05 44.2 5.4 39 93-131 199-237 (750)
8 KOG3051 RNA binding/translatio 82.5 0.11 2.3E-06 44.2 -3.4 68 50-117 16-83 (261)
9 TIGR03682 arCOG04112 arCOG0411 41.5 32 0.00069 29.2 3.4 32 94-126 17-49 (308)
10 KOG1253 tRNA methyltransferase 38.5 52 0.0011 30.8 4.4 40 81-120 186-225 (525)
11 PF03279 Lip_A_acyltrans: Bact 37.7 33 0.00071 27.6 2.7 23 94-116 181-203 (295)
12 PF08351 DUF1726: Domain of un 35.9 37 0.00081 24.0 2.5 35 79-114 14-48 (92)
13 COG1560 HtrB Lauroyl/myristoyl 31.1 26 0.00057 29.9 1.3 29 92-120 182-210 (308)
14 TIGR00091 tRNA (guanine-N(7)-) 31.1 47 0.001 25.3 2.6 23 92-114 113-135 (194)
15 PF08241 Methyltransf_11: Meth 30.9 21 0.00045 22.5 0.5 19 91-109 77-95 (95)
16 PF01866 Diphthamide_syn: Puta 30.2 50 0.0011 27.6 2.7 32 93-125 8-40 (307)
17 PLN02476 O-methyltransferase 30.1 48 0.001 28.0 2.6 41 81-122 197-239 (278)
18 PF14399 Transpep_BrtH: NlpC/p 30.0 57 0.0012 26.2 3.0 25 91-115 75-99 (317)
19 COG1736 DPH2 Diphthamide synth 29.9 53 0.0012 28.9 3.0 35 92-127 37-73 (347)
20 TIGR02208 lipid_A_msbB lipid A 29.6 60 0.0013 26.7 3.1 25 92-116 180-204 (305)
21 PF09180 ProRS-C_1: Prolyl-tRN 28.8 66 0.0014 21.4 2.7 18 94-111 1-18 (68)
22 PF14058 PcfK: PcfK-like prote 28.7 6.3 0.00014 30.4 -2.6 26 101-126 49-74 (140)
23 PF14258 DUF4350: Domain of un 28.7 1.3E+02 0.0027 19.3 4.0 29 81-109 38-68 (70)
24 PF09837 DUF2064: Uncharacteri 28.0 1E+02 0.0022 22.5 3.8 41 80-120 62-106 (122)
25 TIGR00446 nop2p NOL1/NOP2/sun 27.6 43 0.00094 27.1 1.9 23 92-114 180-202 (264)
26 PRK10148 hypothetical protein; 27.5 79 0.0017 23.6 3.2 32 90-121 95-131 (147)
27 PF05951 Peptidase_M15_2: Bact 26.7 85 0.0018 24.7 3.3 32 82-113 107-138 (152)
28 cd07985 LPLAT_GPAT Lysophospho 26.2 91 0.002 26.0 3.6 41 89-129 99-147 (235)
29 cd01481 vWA_collagen_alpha3-VI 25.9 1.9E+02 0.0041 21.7 5.0 35 90-130 118-152 (165)
30 TIGR00322 diphth2_R diphthamid 25.4 87 0.0019 26.9 3.4 32 93-125 33-66 (332)
31 PRK15018 1-acyl-sn-glycerol-3- 25.3 84 0.0018 25.5 3.2 35 80-114 112-150 (245)
32 cd07988 LPLAT_ABO13168-like Ly 24.3 1.1E+02 0.0024 22.9 3.5 36 80-116 70-108 (163)
33 TIGR02464 ribofla_fusion conse 23.9 59 0.0013 24.8 2.0 24 101-124 103-129 (153)
34 cd01475 vWA_Matrilin VWA_Matri 23.0 2.1E+02 0.0044 22.2 4.9 34 91-130 121-154 (224)
35 PRK11933 yebU rRNA (cytosine-C 22.7 60 0.0013 29.3 2.0 24 91-114 222-245 (470)
36 COG4122 Predicted O-methyltran 22.6 96 0.0021 25.4 3.0 29 81-109 135-164 (219)
37 PRK06860 lipid A biosynthesis 22.1 97 0.0021 25.5 3.0 23 94-116 184-206 (309)
38 COG0144 Sun tRNA and rRNA cyto 22.1 63 0.0014 27.7 2.0 25 90-114 267-291 (355)
39 TIGR00308 TRM1 tRNA(guanine-26 22.1 1.2E+02 0.0027 26.4 3.8 36 80-115 116-152 (374)
40 TIGR00243 Dxr 1-deoxy-D-xylulo 21.9 1.4E+02 0.0029 26.9 4.0 62 61-130 276-337 (389)
41 PF04472 DUF552: Protein of un 21.9 1.2E+02 0.0025 20.1 2.9 21 91-111 9-29 (73)
42 PRK06946 lipid A biosynthesis 21.8 1E+02 0.0022 25.3 3.1 24 93-116 169-192 (293)
43 smart00563 PlsC Phosphate acyl 21.3 1.4E+02 0.0029 19.5 3.1 37 81-117 50-89 (118)
44 cd01482 vWA_collagen_alphaI-XI 21.0 2.5E+02 0.0054 20.4 4.8 33 92-130 117-149 (164)
45 cd07992 LPLAT_AAK14816-like Ly 20.8 1.6E+02 0.0034 22.4 3.8 23 92-114 98-121 (203)
46 cd07986 LPLAT_ACT14924-like Ly 20.8 1.5E+02 0.0033 22.8 3.7 33 81-113 69-108 (210)
47 PRK08943 lipid A biosynthesis 20.0 1.3E+02 0.0028 24.9 3.4 25 92-116 189-213 (314)
No 1
>PRK11630 hypothetical protein; Provisional
Probab=99.63 E-value=2.7e-16 Score=124.47 Aligned_cols=55 Identities=29% Similarity=0.532 Sum_probs=50.9
Q ss_pred ceEEEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 78 GLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 78 mm~i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
|++++++++++++.+.+++++++|++||+|+||||||||||||+.|++||+|||+
T Consensus 1 m~~~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~ 55 (206)
T PRK11630 1 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55 (206)
T ss_pred CCceEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHH
Confidence 5667888888888778999999999999999999999999999999999999984
No 2
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.5e-15 Score=119.50 Aligned_cols=53 Identities=32% Similarity=0.497 Sum_probs=49.2
Q ss_pred EEEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 80 ~i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
+++.+++.+++...++++++.|++||+|+||||||||||||+.|++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~ 54 (211)
T COG0009 2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYE 54 (211)
T ss_pred ceeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHH
Confidence 46788888877888999999999999999999999999999999999999984
No 3
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=99.50 E-value=1.4e-14 Score=113.85 Aligned_cols=49 Identities=35% Similarity=0.587 Sum_probs=45.2
Q ss_pred eCCCCCChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 84 ADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 84 i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
+++++++.+.+++++++|++||+|+|||||+|||+|++.|++|++|||+
T Consensus 1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~ 49 (201)
T TIGR00057 1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYR 49 (201)
T ss_pred CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHH
Confidence 3567777778999999999999999999999999999999999999985
No 4
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=99.46 E-value=4.5e-14 Score=110.59 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=41.2
Q ss_pred CChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 89 ADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 89 p~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
++.+.++++++.|++||||+|||||||||||++.|++||+|||+
T Consensus 5 ~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~ 48 (190)
T PRK10634 5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLE 48 (190)
T ss_pred ccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999985
No 5
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=98.78 E-value=5.3e-09 Score=96.34 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=39.9
Q ss_pred hhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
.+.++++++.|++|++|++||||+|||+||+.|++||++||+
T Consensus 162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~ 203 (711)
T TIGR00143 162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRL 203 (711)
T ss_pred hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999984
No 6
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.00037 Score=58.72 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred hcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHhC
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy~ 132 (132)
..++.+.-+-+.+++|+|||||+||+|+++.+..++.+||.
T Consensus 17 ~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~ 57 (261)
T KOG3051|consen 17 ALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYK 57 (261)
T ss_pred hhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhh
Confidence 34555556677899999999999999999999999999874
No 7
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=0.71 Score=44.17 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=37.3
Q ss_pred cHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHHh
Q 032838 93 KLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLR 131 (132)
Q Consensus 93 ~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRIy 131 (132)
.|+++++.|+.|++|++=-=-.|.|+||+.|.++|+++.
T Consensus 199 ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR 237 (750)
T COG0068 199 AIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLR 237 (750)
T ss_pred HHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHH
Confidence 789999999999999999999999999999999999986
No 8
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=82.50 E-value=0.11 Score=44.18 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=51.1
Q ss_pred CceeeeeeeeecCcccccccCcccCccCceEEEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcceee
Q 032838 50 SRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAI 117 (132)
Q Consensus 50 ~~~~~~~~~~k~~~krlky~~~~f~~~~mm~i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGL 117 (132)
+++..++.+.++..|+.+|+++.+.+.....+.......-..+..+.+.+.|..+-.-+.+++++|..
T Consensus 16 ~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~ 83 (261)
T KOG3051|consen 16 PALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAI 83 (261)
T ss_pred hhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhh
Confidence 66778999999999999999999888764445555554444455566667777777777888888776
No 9
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=41.52 E-value=32 Score=29.20 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCe-EEEccCcceeecccCCCHHH
Q 032838 94 LEPVVELLKEGAV-GVIPTDTLYAIVCDLKSHSA 126 (132)
Q Consensus 94 I~~aae~L~~GgV-Vi~PTDTVYGLgcda~n~~A 126 (132)
..++++.|++.+. +++=-||.|| +|+..+..|
T Consensus 17 a~~ia~~l~~~~~~v~I~gD~tYG-aCcV~D~~a 49 (308)
T TIGR03682 17 AFEIAQKLEEKGYEVIISGEPCYG-ACDLADDEA 49 (308)
T ss_pred HHHHHHHHHhCCceEEEEcCCcee-eccCChHHH
Confidence 3455666655444 8899999999 777766655
No 10
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.46 E-value=52 Score=30.77 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=30.9
Q ss_pred EEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcceeeccc
Q 032838 81 YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCD 120 (132)
Q Consensus 81 i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGLgcd 120 (132)
++++||......-++.|++.+++||++.+-.--.+-|+++
T Consensus 186 vIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn 225 (525)
T KOG1253|consen 186 VIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGN 225 (525)
T ss_pred eEecCCCCCccHHHHHHHHHhhcCCEEEEEecchHhhccC
Confidence 6899999888889999999999999976543333444444
No 11
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=37.65 E-value=33 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCeEEEccCccee
Q 032838 94 LEPVVELLKEGAVGVIPTDTLYA 116 (132)
Q Consensus 94 I~~aae~L~~GgVVi~PTDTVYG 116 (132)
+.++++.|++|++|++-.|-.+|
T Consensus 181 ~~~~~~~Lk~g~~v~~l~Dq~~~ 203 (295)
T PF03279_consen 181 IRELIRALKEGGIVGLLGDQDPG 203 (295)
T ss_pred HHHHHHHhccCCEEEEEECCCCC
Confidence 89999999999999999997664
No 12
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=35.86 E-value=37 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcc
Q 032838 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTL 114 (132)
Q Consensus 79 m~i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTV 114 (132)
+.++... +.-+++.+..++.+++.||++++-+...
T Consensus 14 ~~i~d~~-~g~~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 14 LLIFDAF-EGFDPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp SEEEE-S-S---HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred EEEEEcc-CCCCHHHHHHHhcceecCeEEEEEcCCH
Confidence 3466665 3556789999999999999999766653
No 13
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.13 E-value=26 Score=29.95 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.5
Q ss_pred hcHHHHHHHHhcCCeEEEccCcceeeccc
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCD 120 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTVYGLgcd 120 (132)
+.+++.++.|++|+.|.|-.|-.||-+..
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~ 210 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGES 210 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCC
Confidence 46999999999999999999998886654
No 14
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=31.06 E-value=47 Score=25.34 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.6
Q ss_pred hcHHHHHHHHhcCCeEEEccCcc
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTL 114 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTV 114 (132)
..++++.+.|+.||.+++=||..
T Consensus 113 ~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 113 HFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCH
Confidence 46889999999999999998876
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=30.93 E-value=21 Score=22.47 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.7
Q ss_pred hhcHHHHHHHHhcCCeEEE
Q 032838 91 SWKLEPVVELLKEGAVGVI 109 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~ 109 (132)
...++++.+.|+.||.+++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 4678999999999999876
No 16
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=30.18 E-value=50 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=17.2
Q ss_pred cHHHHHHHHhcCC-eEEEccCcceeecccCCCHH
Q 032838 93 KLEPVVELLKEGA-VGVIPTDTLYAIVCDLKSHS 125 (132)
Q Consensus 93 ~I~~aae~L~~Gg-VVi~PTDTVYGLgcda~n~~ 125 (132)
...++++.|++.+ -+++=-||.|| +|+.....
T Consensus 8 ~a~~ia~~L~~~~~~v~IlaDttYG-aCcvD~~~ 40 (307)
T PF01866_consen 8 DAVEIASILESTGVEVYILADTTYG-ACCVDEVA 40 (307)
T ss_dssp HHHHHHHHHHTTT-EEEEE-S-B---TTS--HHH
T ss_pred HHHHHHHHHHcCCceEEEEeCCccc-CCCcCHHH
Confidence 3456777787654 48899999999 55554433
No 17
>PLN02476 O-methyltransferase
Probab=30.07 E-value=48 Score=28.02 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.5
Q ss_pred EEEeCCCCCC-hhcHHHHHHHHhcCCeEEEccCcce-eecccCC
Q 032838 81 YVEADPSGAD-SWKLEPVVELLKEGAVGVIPTDTLY-AIVCDLK 122 (132)
Q Consensus 81 i~~i~p~np~-~~~I~~aae~L~~GgVVi~PTDTVY-GLgcda~ 122 (132)
++.++.+..+ ...++.+.+.|+.||+|++ .++.| |..+++.
T Consensus 197 ~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~~ 239 (278)
T PLN02476 197 FAFVDADKRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADPL 239 (278)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCcc
Confidence 4566665433 3567888999999999988 56666 6666653
No 18
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=29.96 E-value=57 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.2
Q ss_pred hhcHHHHHHHHhcCCeEEEccCcce
Q 032838 91 SWKLEPVVELLKEGAVGVIPTDTLY 115 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~PTDTVY 115 (132)
...++.+.+.|.+|.+|++.+|..|
T Consensus 75 ~~~~~~l~~~l~~g~pv~~~~D~~~ 99 (317)
T PF14399_consen 75 DEAWEELKEALDAGRPVIVWVDMYY 99 (317)
T ss_pred HHHHHHHHHHHhCCCceEEEecccc
Confidence 5678899999999999999999877
No 19
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=29.86 E-value=53 Score=28.91 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=25.2
Q ss_pred hcHHHHHHHHhcC-Ce-EEEccCcceeecccCCCHHHH
Q 032838 92 WKLEPVVELLKEG-AV-GVIPTDTLYAIVCDLKSHSAI 127 (132)
Q Consensus 92 ~~I~~aae~L~~G-gV-Vi~PTDTVYGLgcda~n~~AV 127 (132)
....++++.|++- |+ +++-+|++|| +||..+..+-
T Consensus 37 ~~~~~ia~~le~~~~~~v~i~gd~~yG-ACdi~~~~a~ 73 (347)
T COG1736 37 RYAIEIADILEANLGAEVIISGDPVYG-ACDIDDLKAK 73 (347)
T ss_pred HHHHHHHHHHHHhhCceEEEeCCcccc-cccCCHHHHh
Confidence 4456777777776 44 8899999999 7776655543
No 20
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=29.64 E-value=60 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.2
Q ss_pred hcHHHHHHHHhcCCeEEEccCccee
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTLYA 116 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTVYG 116 (132)
..+.++++.|++|++|++-.|-.+|
T Consensus 180 ~~~r~i~~aLk~g~~v~il~Dq~~~ 204 (305)
T TIGR02208 180 AGIKALLASLKRGESGYYLPDEDHG 204 (305)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCC
Confidence 4589999999999999999998864
No 21
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=28.75 E-value=66 Score=21.44 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCeEEEcc
Q 032838 94 LEPVVELLKEGAVGVIPT 111 (132)
Q Consensus 94 I~~aae~L~~GgVVi~PT 111 (132)
++++.+.|.+||+|.+|=
T Consensus 1 ~eE~k~~i~~gg~v~~pw 18 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPW 18 (68)
T ss_dssp HHHHHHHHHTSSEEEEEE
T ss_pred ChHHHHHHhCCCEEEEEc
Confidence 467888899999999884
No 22
>PF14058 PcfK: PcfK-like protein
Probab=28.70 E-value=6.3 Score=30.40 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=21.7
Q ss_pred HhcCCeEEEccCcceeecccCCCHHH
Q 032838 101 LKEGAVGVIPTDTLYAIVCDLKSHSA 126 (132)
Q Consensus 101 L~~GgVVi~PTDTVYGLgcda~n~~A 126 (132)
+.++|...|+-|+|||++.+.++.+-
T Consensus 49 ~~~~g~~~v~DdeVf~wa~~Yy~ed~ 74 (140)
T PF14058_consen 49 QKNSGCNGVSDDEVFSWAVHYYDEDD 74 (140)
T ss_pred HHcCCCCccChHHHHHHHHHHHcccc
Confidence 35699999999999999998877553
No 23
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=28.68 E-value=1.3e+02 Score=19.26 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEeCCC-CCCh-hcHHHHHHHHhcCCeEEE
Q 032838 81 YVEADPS-GADS-WKLEPVVELLKEGAVGVI 109 (132)
Q Consensus 81 i~~i~p~-np~~-~~I~~aae~L~~GgVVi~ 109 (132)
++-+.|. .... ..+++..+.+++||-+++
T Consensus 38 ll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 38 LLVIGPDLRLSEPEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHcCCEEEE
Confidence 5666665 4443 778899999999998875
No 24
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=28.00 E-value=1e+02 Score=22.53 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=27.2
Q ss_pred EEEEeCCCCC--ChhcHHHHHHHHhcCCeEEEccC-cc-eeeccc
Q 032838 80 MYVEADPSGA--DSWKLEPVVELLKEGAVGVIPTD-TL-YAIVCD 120 (132)
Q Consensus 80 ~i~~i~p~np--~~~~I~~aae~L~~GgVVi~PTD-TV-YGLgcd 120 (132)
.++-|-.+-| +...|++|.+.|+++.+|+-|++ -. |-||..
T Consensus 62 ~vvliGsD~P~l~~~~l~~A~~~L~~~d~VlgPa~DGGy~LiG~~ 106 (122)
T PF09837_consen 62 PVVLIGSDCPDLTPDDLEQAFEALQRHDVVLGPAEDGGYYLIGLR 106 (122)
T ss_dssp EEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEBTTSSEEEEEEE
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHhccCCEEEeeccCCCEEEEecC
Confidence 4566655555 46789999999999999999985 33 444443
No 25
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=27.61 E-value=43 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.2
Q ss_pred hcHHHHHHHHhcCCeEEEccCcc
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTL 114 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTV 114 (132)
..++.+.+.|+.||.++|-|=|+
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCC
Confidence 47788999999999999887554
No 26
>PRK10148 hypothetical protein; Provisional
Probab=27.54 E-value=79 Score=23.60 Aligned_cols=32 Identities=13% Similarity=-0.051 Sum_probs=23.1
Q ss_pred ChhcHHHHHHHHhcCCeEEEccCc-----ceeecccC
Q 032838 90 DSWKLEPVVELLKEGAVGVIPTDT-----LYAIVCDL 121 (132)
Q Consensus 90 ~~~~I~~aae~L~~GgVVi~PTDT-----VYGLgcda 121 (132)
+.+.++.+.+.|.+||-|+.|-+. .||...|.
T Consensus 95 d~ee~~~~~~aLa~gg~v~mpl~~~~wg~~~g~v~D~ 131 (147)
T PRK10148 95 DVEEGKRWFDNLAANGKIEMAWQETFWAHGFGKVTDK 131 (147)
T ss_pred CHHHHHHHHHHhhCCCEEEecchhcchhhccEEEECC
Confidence 345677899999999999887654 45555554
No 27
>PF05951 Peptidase_M15_2: Bacterial protein of unknown function (DUF882); InterPro: IPR010275 This family consists of proteins related to metallopeptidases belong to MEROPS peptidase family M15A. They are classed as non-peptidase homologues (M15A.UNA) and include A3D3U2 from SWISSPROT, where the metal ligands (marked by *) are conserved but the catalytic Asn has been replaced by Asp (+): 70 80 90 100 110 120 A3D3U2: QSKVLNDFNHLLRDHRQNVAAPMDKRLFDLLYSLKTTLNVDDEIHVISGYRSPKTNAMLA : .:. .:. : :.: ::.:: . :: . B1W1A6: PELNTCNSTWAGGKVAAGTARANALSSMWKLEALRHALG-DRSIRVTSGFRSASCNAAV- 20 30 40 50 60 70 * 130 * 140 150 160 170 * + A3D3U2: SNSGGVAKKSYHMRGMAMDIAIPSVKLKTLREAALSLKLGGV---GYYPNSGFVHVDCGP :: :..: :: : :.:.. .: :: . : . :. :: .. :::. :: B1W1A6: ---GG-ASNSRHMYGDAVDLGASPHSLCTLAKQARYHGFRGILGPGYVGHNDHVHVNQGP 80 90 100 110 120 B1W1A6 from SWISSPROT belongs to IPR013230 from INTERPRO, whcih contains peptidases belonging to the M15A family. The function of the proteins in this entry are not known.
Probab=26.71 E-value=85 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.3
Q ss_pred EEeCCCCCChhcHHHHHHHHhcCCeEEEccCc
Q 032838 82 VEADPSGADSWKLEPVVELLKEGAVGVIPTDT 113 (132)
Q Consensus 82 ~~i~p~np~~~~I~~aae~L~~GgVVi~PTDT 113 (132)
+++.-..-....+.+++..|+.|||-.||+..
T Consensus 107 iDi~ipgv~~~~l~~~A~~l~~GGVG~Yp~s~ 138 (152)
T PF05951_consen 107 IDIRIPGVPLRQLRRAALSLQRGGVGYYPRSG 138 (152)
T ss_pred EEEecCCCCHHHHHHHHHHcCCCeEEeeCCCC
Confidence 45544455567899999999999999999853
No 28
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=26.19 E-value=91 Score=26.02 Aligned_cols=41 Identities=29% Similarity=0.219 Sum_probs=27.7
Q ss_pred CChhcHHHHHHHHhcCCe--EEEccCccee------ecccCCCHHHHHH
Q 032838 89 ADSWKLEPVVELLKEGAV--GVIPTDTLYA------IVCDLKSHSAIER 129 (132)
Q Consensus 89 p~~~~I~~aae~L~~GgV--Vi~PTDTVYG------Lgcda~n~~AVeR 129 (132)
.+...++.+.+.|++|+. .|||-=|-.- +.-.+++..+|+-
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~ 147 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEM 147 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHH
Confidence 456789999999999986 5888755442 2223566666654
No 29
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.86 E-value=1.9e+02 Score=21.65 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=23.8
Q ss_pred ChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHH
Q 032838 90 DSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130 (132)
Q Consensus 90 ~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRI 130 (132)
....+.++++.|++-||.+ |++|....|.+-++.|
T Consensus 118 s~d~~~~~a~~lr~~gv~i------~~vG~~~~~~~eL~~i 152 (165)
T cd01481 118 SQDDVERPAVALKRAGIVP------FAIGARNADLAELQQI 152 (165)
T ss_pred CcchHHHHHHHHHHCCcEE------EEEeCCcCCHHHHHHH
Confidence 3356888999999999876 4455544566666554
No 30
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=25.36 E-value=87 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.585 Sum_probs=22.7
Q ss_pred cHHHHHHHHhc--CCeEEEccCcceeecccCCCHH
Q 032838 93 KLEPVVELLKE--GAVGVIPTDTLYAIVCDLKSHS 125 (132)
Q Consensus 93 ~I~~aae~L~~--GgVVi~PTDTVYGLgcda~n~~ 125 (132)
...++++.|++ |--+++=-||.|| +|+..+..
T Consensus 33 ~a~~ia~~l~~~~~~~v~IlaD~~YG-aCcvdd~~ 66 (332)
T TIGR00322 33 RALEIAEIIEQFCGVETVISGDTSFG-ACDIDDFT 66 (332)
T ss_pred HHHHHHHHHHhccCceEEEEcCCcee-cCCCCHHH
Confidence 34566777765 6669999999999 56554433
No 31
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=25.25 E-value=84 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=25.3
Q ss_pred EEEEeCCCCCCh--hcHHHHHHHHhcCC--eEEEccCcc
Q 032838 80 MYVEADPSGADS--WKLEPVVELLKEGA--VGVIPTDTL 114 (132)
Q Consensus 80 ~i~~i~p~np~~--~~I~~aae~L~~Gg--VVi~PTDTV 114 (132)
..+.++.+++.. ..++++.+.|+++| +++||--|-
T Consensus 112 g~i~VdR~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR 150 (245)
T PRK15018 112 GNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTR 150 (245)
T ss_pred CCeEEeCCCHHHHHHHHHHHHHHHHhCCCEEEEECCccC
Confidence 357777766443 46788889998765 689998775
No 32
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=24.35 E-value=1.1e+02 Score=22.94 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=26.6
Q ss_pred EEEEeCCCCCChhcHHHHHHHHhcCC---eEEEccCccee
Q 032838 80 MYVEADPSGADSWKLEPVVELLKEGA---VGVIPTDTLYA 116 (132)
Q Consensus 80 ~i~~i~p~np~~~~I~~aae~L~~Gg---VVi~PTDTVYG 116 (132)
..+.++.+++ ...++.+.+.|++|+ ++|||--|--.
T Consensus 70 g~i~V~r~~~-~~~~~~~~~~l~~g~~~~l~IFPEGtR~~ 108 (163)
T cd07988 70 GGIPVDRSRA-GGLVEQVVEEFRRREEFVLAIAPEGTRSK 108 (163)
T ss_pred CCEEeEcCCc-ccHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 3567776654 346888999999874 89999887654
No 33
>TIGR02464 ribofla_fusion conserved hypothetical protein, ribA/ribD-fused. This model describes a sequence region that occurs in at least three different polypeptide contexts. It is found fused to GTP cyclohydrolase II, the RibA of riboflavin biosynthesis (TIGR00505), as in Vibrio vulnificus. It is found fused to riboflavin biosynthesis protein RibD (TIGR00326) in rice and Arabidopsis. It occurs as a standalone protein in a number of bacterial species in varied contexts, including single gene operons and bacteriophage genomes. The member from E. coli currently is named YbiA. The function(s) of members of this family is unknown.
Probab=23.95 E-value=59 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=17.5
Q ss_pred HhcCCeEE---EccCcceeecccCCCH
Q 032838 101 LKEGAVGV---IPTDTLYAIVCDLKSH 124 (132)
Q Consensus 101 L~~GgVVi---~PTDTVYGLgcda~n~ 124 (132)
|.-|+-++ -|.|.+||+|.+..++
T Consensus 103 l~Tg~~~LVE~s~~D~~WG~g~~~~~~ 129 (153)
T TIGR02464 103 LSTGGKKLVEASPNDKIWGIGLDAQDA 129 (153)
T ss_pred HhcCCcEEEecCCCCCeeecCCCCCCc
Confidence 44466555 4999999999987643
No 34
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=23.01 E-value=2.1e+02 Score=22.21 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=21.5
Q ss_pred hhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHH
Q 032838 91 SWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRI 130 (132)
...+.++++.+++.|+.+| .+|.-..+.+.+.+|
T Consensus 121 ~~~~~~~a~~lk~~gv~i~------~VgvG~~~~~~L~~i 154 (224)
T cd01475 121 QDDVSEVAAKARALGIEMF------AVGVGRADEEELREI 154 (224)
T ss_pred cccHHHHHHHHHHCCcEEE------EEeCCcCCHHHHHHH
Confidence 3457888999999998654 444333455555544
No 35
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=22.72 E-value=60 Score=29.33 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=20.0
Q ss_pred hhcHHHHHHHHhcCCeEEEccCcc
Q 032838 91 SWKLEPVVELLKEGAVGVIPTDTL 114 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~PTDTV 114 (132)
...++.|++.|+.||.+||-|=|+
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCC
Confidence 356788999999999999988663
No 36
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=22.56 E-value=96 Score=25.44 Aligned_cols=29 Identities=31% Similarity=0.255 Sum_probs=21.1
Q ss_pred EEEeCCCCC-ChhcHHHHHHHHhcCCeEEE
Q 032838 81 YVEADPSGA-DSWKLEPVVELLKEGAVGVI 109 (132)
Q Consensus 81 i~~i~p~np-~~~~I~~aae~L~~GgVVi~ 109 (132)
++.++.+.. .+..++.+.+.|+.||+||+
T Consensus 135 liFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 135 LVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 344444332 36788999999999999985
No 37
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.13 E-value=97 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCeEEEccCccee
Q 032838 94 LEPVVELLKEGAVGVIPTDTLYA 116 (132)
Q Consensus 94 I~~aae~L~~GgVVi~PTDTVYG 116 (132)
+.++.+.|++|++|.+-.|-..|
T Consensus 184 ~r~~~k~Lk~g~~v~il~Dq~~~ 206 (309)
T PRK06860 184 LKGMIKALKKGERIWYAPDHDYG 206 (309)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCC
Confidence 78999999999999999998864
No 38
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=63 Score=27.73 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.6
Q ss_pred ChhcHHHHHHHHhcCCeEEEccCcc
Q 032838 90 DSWKLEPVVELLKEGAVGVIPTDTL 114 (132)
Q Consensus 90 ~~~~I~~aae~L~~GgVVi~PTDTV 114 (132)
|.+.++.+.+.|+.||+++|-|=|+
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCC
Confidence 3457889999999999999988554
No 39
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=22.12 E-value=1.2e+02 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.6
Q ss_pred EEEEeCCCCCChhcHHHHHHHHhcCCeEE-EccCcce
Q 032838 80 MYVEADPSGADSWKLEPVVELLKEGAVGV-IPTDTLY 115 (132)
Q Consensus 80 ~i~~i~p~np~~~~I~~aae~L~~GgVVi-~PTDTVY 115 (132)
.++.+||-......++.+.+.+++||++. .-|||--
T Consensus 116 DvIdlDPfGs~~~fld~al~~~~~~glL~vTaTD~~~ 152 (374)
T TIGR00308 116 HVIDIDPFGTPAPFVDSAIQASAERGLLLVTATDTSA 152 (374)
T ss_pred CEEEeCCCCCcHHHHHHHHHhcccCCEEEEEecccHH
Confidence 47888997654578899999999998755 5588753
No 40
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=21.88 E-value=1.4e+02 Score=26.92 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=37.8
Q ss_pred cCcccccccCcccCccCceEEEEeCCCCCChhcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHH
Q 032838 61 RSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130 (132)
Q Consensus 61 ~~~krlky~~~~f~~~~mm~i~~i~p~np~~~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRI 130 (132)
.+|+|++...+.+.=.+.-.+-.-.|+......+.-+.++++.|| .|+..-++-|+.||+.-
T Consensus 276 ~yP~R~~~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~ea~~~gg--------~~p~vlNAANEvAV~~F 337 (389)
T TIGR00243 276 AWPNRVNSGVKPLDLCKLSALTFEEPDFDRYPCLKLAMEAFKAGQ--------AATTVLNAANEVAVAAF 337 (389)
T ss_pred CCcccccCCCCCcCccccCCCeeeCCChhhCchHHHHHHHHhcCC--------CceEEEEHHHHHHHHHH
Confidence 489998865443222111112122233333457899999999997 45667778888888753
No 41
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.87 E-value=1.2e+02 Score=20.15 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.2
Q ss_pred hhcHHHHHHHHhcCCeEEEcc
Q 032838 91 SWKLEPVVELLKEGAVGVIPT 111 (132)
Q Consensus 91 ~~~I~~aae~L~~GgVVi~PT 111 (132)
.+..+++++.|++|.+|++=.
T Consensus 9 ~~D~~~i~~~l~~g~~Vivnl 29 (73)
T PF04472_consen 9 FEDAREIVDALREGKIVIVNL 29 (73)
T ss_dssp GGGHHHHHHHHHTT--EEEE-
T ss_pred HHHHHHHHHHHHcCCEEEEEC
Confidence 457899999999999998643
No 42
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.82 E-value=1e+02 Score=25.28 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.9
Q ss_pred cHHHHHHHHhcCCeEEEccCccee
Q 032838 93 KLEPVVELLKEGAVGVIPTDTLYA 116 (132)
Q Consensus 93 ~I~~aae~L~~GgVVi~PTDTVYG 116 (132)
.+..+++.|++|++|.+-.|..+|
T Consensus 169 ~~r~~~~~Lk~g~~v~~l~Dq~~~ 192 (293)
T PRK06946 169 SARQVLRWLRDGKPVMLGADMDFG 192 (293)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCC
Confidence 589999999999999999999875
No 43
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=21.32 E-value=1.4e+02 Score=19.50 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=24.4
Q ss_pred EEEeCCCC--CChhcHHHHHHHHhcCCe-EEEccCcceee
Q 032838 81 YVEADPSG--ADSWKLEPVVELLKEGAV-GVIPTDTLYAI 117 (132)
Q Consensus 81 i~~i~p~n--p~~~~I~~aae~L~~GgV-Vi~PTDTVYGL 117 (132)
.+.++... ...+.++++.+.+++|+. ++||-.+..--
T Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ifPeG~~~~~ 89 (118)
T smart00563 50 AIFIDRENGRLARAALREAVRLLRDGGWLLIFPEGTRSRP 89 (118)
T ss_pred CeEEeCCCcHHHHHHHHHHHHHHhCCCEEEEeCCcccCCC
Confidence 34554433 345677888888988875 77888775443
No 44
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.95 E-value=2.5e+02 Score=20.36 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=21.4
Q ss_pred hcHHHHHHHHhcCCeEEEccCcceeecccCCCHHHHHHH
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERL 130 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTVYGLgcda~n~~AVeRI 130 (132)
..+.++++.|++-|+-+ |.+|..-.+.+.+++|
T Consensus 117 ~~~~~~a~~lk~~gi~i------~~ig~g~~~~~~L~~i 149 (164)
T cd01482 117 DDVELPARVLRNLGVNV------FAVGVKDADESELKMI 149 (164)
T ss_pred chHHHHHHHHHHCCCEE------EEEecCcCCHHHHHHH
Confidence 45678888899888754 4455444456666654
No 45
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=20.83 E-value=1.6e+02 Score=22.42 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.0
Q ss_pred hcHHHHHHHHhcCCe-EEEccCcc
Q 032838 92 WKLEPVVELLKEGAV-GVIPTDTL 114 (132)
Q Consensus 92 ~~I~~aae~L~~GgV-Vi~PTDTV 114 (132)
..++.+.+.|++|.. +|||--|.
T Consensus 98 ~~~~~~~~~l~~G~~l~IFPEGtr 121 (203)
T cd07992 98 AVFDAVGEALKAGGAIGIFPEGGS 121 (203)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCC
Confidence 567899999999986 68998875
No 46
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=20.78 E-value=1.5e+02 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=23.4
Q ss_pred EEEeCCCCC------ChhcHHHHHHHHhcCCe-EEEccCc
Q 032838 81 YVEADPSGA------DSWKLEPVVELLKEGAV-GVIPTDT 113 (132)
Q Consensus 81 i~~i~p~np------~~~~I~~aae~L~~GgV-Vi~PTDT 113 (132)
++.++..+. ....++++.+.|++|+. +|||-=|
T Consensus 69 ~i~v~r~~~~~~~~~~~~~~~~~~~~L~~G~~l~IFPEGt 108 (210)
T cd07986 69 FIPVDPLEGRAALAKNRESLREALRHLKNGGALIIFPAGR 108 (210)
T ss_pred EEeccCCCCcchhhhhHHHHHHHHHHHhCCCEEEEECCcc
Confidence 356665543 24568899999999976 5788766
No 47
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=20.04 E-value=1.3e+02 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.1
Q ss_pred hcHHHHHHHHhcCCeEEEccCccee
Q 032838 92 WKLEPVVELLKEGAVGVIPTDTLYA 116 (132)
Q Consensus 92 ~~I~~aae~L~~GgVVi~PTDTVYG 116 (132)
..+.++.+.|++|++|.+-.|-.+|
T Consensus 189 ~~~r~i~kaLk~g~~v~il~Dq~~~ 213 (314)
T PRK08943 189 DGIKPFISSVRQGYWGYYLPDEDHG 213 (314)
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCCC
Confidence 3588999999999999999998874
Done!