RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032838
         (132 letters)



>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 81  YVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ R
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55


>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score = 49.2 bits (116), Expect = 1e-08
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 79  LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
           ++  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFR 54


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 47.2 bits (111), Expect = 5e-08
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 94  LEPVVELLKEGAVGVIPTDTLYAIVCDLKSHSAIERLRR 132
           +   +++L E  V   PT+ ++ + CD  S +A+ RL  
Sbjct: 8   IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLE 46


>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus
          thermophilus [TaxId: 274]}
          Length = 95

 Score = 23.9 bits (51), Expect = 5.3
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 50 SRYRILAMTVKRSPKRLKYSAP 71
          S+YR+  +  KR+ + L++   
Sbjct: 14 SKYRLTVVVAKRAQQLLRHGFK 35


>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
           x100 [TaxId: 105351]}
          Length = 472

 Score = 23.9 bits (51), Expect = 8.4
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 21  SHSHFLEAATRRAAPFPGRVSSVSPNPKPSR 51
           S++  L A  RR +  P      S +  P  
Sbjct: 417 SYAALLTANNRRNSVVPPSWGETSASSVPGT 447


>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia
          coli [TaxId: 562]}
          Length = 98

 Score = 23.1 bits (50), Expect = 9.0
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 13/64 (20%)

Query: 15 LRSHSHSH-----SHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYS 69
          L++  H       +  +E A R  A   G        P P   R    TV  SP   K +
Sbjct: 6  LKAFDHRLIDQATAEIVETAKRTGAQVRG--------PIPLPTRKERFTVLISPHVNKDA 57

Query: 70 APQF 73
            Q+
Sbjct: 58 RDQY 61


>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 301

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%)

Query: 80  MYVEADPSGADSWKLEPVVELLKEGAV----------GVIPTDTLYAIVCD 120
           MY    P  A  WK  P ++ L+   V           +IP D L   V D
Sbjct: 2   MYRNV-PIWAQKWK--PTIKALQSINVKDLKIDPSFLNIIPDDDLTKSVQD 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 486,991
Number of extensions: 20910
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)