Query 032839
Match_columns 132
No_of_seqs 170 out of 928
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01100 V_ATP_synt_C vacuola 100.0 8.1E-32 1.8E-36 193.6 11.2 108 13-121 1-108 (108)
2 PRK06558 V-type ATP synthase s 100.0 1.6E-30 3.6E-35 197.8 12.3 118 10-130 12-129 (159)
3 PRK06649 V-type ATP synthase s 100.0 1.4E-28 3E-33 184.2 12.5 108 14-129 3-115 (143)
4 PRK09621 V-type ATP synthase s 100.0 2.3E-28 5.1E-33 182.9 13.5 111 14-129 4-114 (141)
5 PRK08344 V-type ATP synthase s 100.0 4.1E-28 8.9E-33 184.4 13.8 115 14-128 2-124 (157)
6 PRK14893 V-type ATP synthase s 99.9 7.2E-25 1.6E-29 167.2 14.6 120 10-129 6-127 (161)
7 KOG0233 Vacuolar H+-ATPase V0 99.9 4.3E-26 9.3E-31 175.3 2.4 120 11-130 39-163 (196)
8 PRK06271 V-type ATP synthase s 99.9 3.9E-24 8.4E-29 169.4 12.5 106 16-129 2-107 (213)
9 PRK06271 V-type ATP synthase s 99.9 6.8E-24 1.5E-28 168.0 13.5 113 12-130 70-182 (213)
10 KOG0232 Vacuolar H+-ATPase V0 99.9 1.4E-23 3.1E-28 158.3 8.4 124 7-130 2-125 (156)
11 PF00137 ATP-synt_C: ATP synth 99.7 7.3E-17 1.6E-21 106.3 9.1 66 14-79 1-66 (66)
12 COG0636 AtpE F0F1-type ATP syn 99.6 4.1E-15 8.9E-20 101.7 9.0 67 14-80 8-78 (79)
13 PRK13471 F0F1 ATP synthase sub 99.6 7.2E-15 1.6E-19 101.8 8.1 66 14-79 15-84 (85)
14 PRK06251 V-type ATP synthase s 99.6 9.2E-15 2E-19 104.3 8.6 66 14-79 35-100 (102)
15 CHL00061 atpH ATP synthase CF0 99.5 3.8E-14 8.2E-19 97.4 8.9 66 14-79 8-77 (81)
16 PRK06558 V-type ATP synthase s 99.5 3E-14 6.4E-19 108.7 9.1 68 13-80 91-158 (159)
17 PRK13469 F0F1 ATP synthase sub 99.5 4.1E-14 8.9E-19 96.7 8.8 66 13-79 9-78 (79)
18 PRK14893 V-type ATP synthase s 99.5 4.5E-14 9.7E-19 107.9 9.4 66 14-79 91-156 (161)
19 PRK07354 F0F1 ATP synthase sub 99.5 1.1E-13 2.5E-18 95.0 8.7 66 14-79 8-77 (81)
20 PRK06876 F0F1 ATP synthase sub 99.5 2.1E-13 4.6E-18 93.2 9.1 66 14-79 7-76 (78)
21 PRK13468 F0F1 ATP synthase sub 99.4 1.1E-12 2.3E-17 90.5 8.9 67 13-79 7-77 (82)
22 PRK07558 F0F1 ATP synthase sub 99.4 1E-12 2.3E-17 88.9 8.5 65 13-78 5-73 (74)
23 TIGR03322 alt_F1F0_F0_C altern 99.4 1.2E-12 2.7E-17 90.8 9.0 67 13-79 8-78 (86)
24 PRK08344 V-type ATP synthase s 99.4 1.5E-12 3.3E-17 99.1 10.1 67 13-79 88-155 (157)
25 PRK07159 F0F1 ATP synthase sub 99.4 2.1E-12 4.5E-17 91.9 8.6 65 14-79 31-99 (100)
26 PRK08482 F0F1 ATP synthase sub 99.4 3E-12 6.4E-17 91.9 8.9 67 13-79 30-100 (105)
27 PRK09621 V-type ATP synthase s 99.4 3.5E-12 7.6E-17 95.7 9.3 65 12-76 76-140 (141)
28 MTH00222 ATP9 ATP synthase F0 99.4 6.2E-12 1.3E-16 85.7 8.6 66 13-79 7-76 (77)
29 PRK13464 F0F1 ATP synthase sub 99.3 7.7E-12 1.7E-16 89.1 8.9 67 14-80 14-84 (101)
30 PRK13467 F0F1 ATP synthase sub 99.3 1.4E-11 3E-16 81.8 7.8 56 21-76 6-65 (66)
31 PRK13466 F0F1 ATP synthase sub 99.3 2.1E-11 4.6E-16 80.9 7.5 57 20-76 5-65 (66)
32 PRK05880 F0F1 ATP synthase sub 99.3 5E-11 1.1E-15 82.0 9.0 66 14-79 8-77 (81)
33 TIGR01260 ATP_synt_c ATP synth 99.2 2.1E-11 4.6E-16 79.0 6.0 53 26-78 1-57 (58)
34 PRK07874 F0F1 ATP synthase sub 99.2 3.3E-11 7.2E-16 82.7 7.0 56 20-75 20-79 (80)
35 PRK06649 V-type ATP synthase s 99.2 5.4E-11 1.2E-15 89.4 8.7 64 14-77 79-142 (143)
36 KOG0232 Vacuolar H+-ATPase V0 98.8 6.5E-09 1.4E-13 78.9 3.5 71 10-80 82-154 (156)
37 KOG0233 Vacuolar H+-ATPase V0 98.5 1.2E-07 2.6E-12 73.6 5.1 68 14-81 126-193 (196)
38 COG0636 AtpE F0F1-type ATP syn 98.2 3.1E-06 6.7E-11 57.8 4.6 39 91-129 6-44 (79)
39 PRK07354 F0F1 ATP synthase sub 98.1 8E-06 1.7E-10 56.1 5.0 41 89-129 4-44 (81)
40 TIGR03322 alt_F1F0_F0_C altern 97.9 1.9E-05 4.1E-10 54.9 4.6 44 87-130 3-46 (86)
41 PRK13468 F0F1 ATP synthase sub 97.9 2.2E-05 4.7E-10 54.2 4.8 44 87-130 2-45 (82)
42 PF00137 ATP-synt_C: ATP synth 97.9 2.2E-05 4.8E-10 51.5 4.5 37 93-129 1-37 (66)
43 CHL00061 atpH ATP synthase CF0 97.8 4.1E-05 8.9E-10 52.7 5.0 41 89-129 4-44 (81)
44 PRK06251 V-type ATP synthase s 97.7 5.6E-05 1.2E-09 54.1 4.8 42 88-129 30-71 (102)
45 PRK13469 F0F1 ATP synthase sub 97.6 0.00012 2.5E-09 50.1 4.8 40 89-129 6-45 (79)
46 PRK06876 F0F1 ATP synthase sub 97.3 0.0005 1.1E-08 47.0 4.7 41 90-130 4-44 (78)
47 KOG3025 Mitochondrial F1F0-ATP 97.2 0.00075 1.6E-08 49.7 5.2 65 14-79 68-136 (137)
48 PRK05880 F0F1 ATP synthase sub 97.1 0.0011 2.4E-08 45.7 4.8 41 90-130 5-45 (81)
49 PRK13471 F0F1 ATP synthase sub 97.0 0.0014 3E-08 45.5 4.9 42 89-130 11-52 (85)
50 PRK08482 F0F1 ATP synthase sub 97.0 0.0015 3.2E-08 47.0 4.6 43 88-130 26-68 (105)
51 PRK13464 F0F1 ATP synthase sub 96.3 0.0068 1.5E-07 43.4 4.3 40 91-130 12-51 (101)
52 PRK07558 F0F1 ATP synthase sub 96.3 0.0077 1.7E-07 40.8 4.2 38 91-129 4-41 (74)
53 PRK07159 F0F1 ATP synthase sub 96.0 0.011 2.3E-07 42.3 4.0 37 93-130 31-67 (100)
54 MTH00222 ATP9 ATP synthase F0 96.0 0.013 2.9E-07 39.9 4.2 41 89-130 4-44 (77)
55 PRK13466 F0F1 ATP synthase sub 95.3 0.026 5.5E-07 37.5 3.4 33 98-130 4-36 (66)
56 PRK13467 F0F1 ATP synthase sub 94.2 0.053 1.2E-06 36.0 3.0 31 100-130 6-36 (66)
57 PRK07874 F0F1 ATP synthase sub 94.2 0.067 1.4E-06 36.8 3.5 40 87-130 12-51 (80)
58 TIGR01100 V_ATP_synt_C vacuola 88.9 0.39 8.4E-06 34.7 2.6 32 10-41 74-107 (108)
59 TIGR01260 ATP_synt_c ATP synth 85.4 0.46 1E-05 30.6 1.2 25 106-130 2-26 (58)
60 PRK08124 flagellar motor prote 37.4 1.2E+02 0.0027 24.6 6.1 51 10-79 153-203 (263)
61 TIGR03818 MotA1 flagellar moto 37.1 1.3E+02 0.0028 24.9 6.3 32 45-79 191-222 (282)
62 PRK08990 flagellar motor prote 34.2 1.5E+02 0.0033 24.1 6.1 51 10-79 149-199 (254)
63 PF06796 NapE: Periplasmic nit 34.0 89 0.0019 20.0 3.8 21 57-77 29-49 (56)
64 PF11947 DUF3464: Protein of u 33.9 2.1E+02 0.0045 21.8 6.5 29 51-79 61-89 (153)
65 TIGR02973 nitrate_rd_NapE peri 30.3 1.3E+02 0.0028 18.2 4.5 22 56-77 15-36 (42)
66 PRK06926 flagellar motor prote 29.6 1.9E+02 0.004 23.9 6.0 52 10-80 157-208 (271)
67 TIGR02972 TMAO_torE trimethyla 28.6 1.5E+02 0.0033 18.4 4.3 22 57-78 21-42 (47)
68 PRK08456 flagellar motor prote 27.8 2.2E+02 0.0048 23.0 6.1 17 64-80 187-203 (257)
69 PRK12482 flagellar motor prote 26.6 2.8E+02 0.0062 23.1 6.6 53 10-80 171-223 (287)
70 PRK09110 flagellar motor prote 21.9 3.6E+02 0.0078 22.3 6.4 33 44-79 190-222 (283)
71 PF14851 FAM176: FAM176 family 21.6 3.2E+02 0.007 20.8 5.6 44 60-117 4-47 (153)
72 PF11628 TCR_zetazeta: T-cell 20.9 1.9E+02 0.004 16.7 3.6 21 58-78 5-25 (33)
No 1
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.97 E-value=8.1e-32 Score=193.65 Aligned_cols=108 Identities=70% Similarity=1.228 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhH
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG 92 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g 92 (132)
+|+++|++++++|+++||+||++++|.+...+..++||+++|++++++|||+|+|||||++++++.|+++++ +++++++
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g 79 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG 79 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence 478999999999999999999999998888888888999999999999999999999999999999987643 4889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032839 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGV 121 (132)
Q Consensus 93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi 121 (132)
|.+|++||++|+++|+||++||++||+++
T Consensus 80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g~ 108 (108)
T TIGR01100 80 FIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 99999999999999999999999999874
No 2
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=1.6e-30 Score=197.81 Aligned_cols=118 Identities=30% Similarity=0.466 Sum_probs=112.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchh
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~ 89 (132)
.+++|+++|++++++++++||+||+++++++++++++||||.++|.+++++|||+++|||+|+++++.+++++ ++++
T Consensus 12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~---~~~~ 88 (159)
T PRK06558 12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP---ELSL 88 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cccH
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999854 3789
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+++|.+|++||++|++++.||++||+++++++++++|||.+
T Consensus 89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~ 129 (159)
T PRK06558 89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEE 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 99999999999999999999999999999999999999953
No 3
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=1.4e-28 Score=184.24 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----chhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccch
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY 88 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~-----~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~ 88 (132)
++++|++++++++++||++|++++|+++++.+.| |||.|. .++.+.+|.||+|||||+++++.. +++
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s 74 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS 74 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence 6899999999999999999999999999999999 999999 999999999999999999999986 267
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
++++|.+|++||++|+++++|+++||+++++|+|+++|||.
T Consensus 75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~ 115 (143)
T PRK06649 75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGK 115 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 89999999999999999999999999999999999999984
No 4
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.96 E-value=2.3e-28 Score=182.88 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhHH
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY 93 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g~ 93 (132)
++++|++++++++++||+||++++|+++++++.|+||.|+|.++..++||+|+|||||+++++..++++. .++++
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~ 78 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999887642 46899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 94 ~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
..+++||++|++++.||+.||+++++++++++|||.
T Consensus 79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe 114 (141)
T PRK09621 79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSE 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999999999999999999999999995
No 5
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=4.1e-28 Score=184.35 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--------PKAK 85 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~--------~~~~ 85 (132)
|+++|++++++++++||+||++++|++++++++||||.++|++++.++||+|+|||+|++|++..+.+ ++.+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 68899999999999999999999999999999999999999999999999999999999877643321 1124
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 032839 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLL 128 (132)
Q Consensus 86 ~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~ 128 (132)
++++.+++.++++||++|++++.||++||+++++++++++|||
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P 124 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP 124 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5788999999999999999999999999999999999999999
No 6
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.93 E-value=7.2e-25 Score=167.17 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=111.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cccc
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK--AKSY 87 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~--~~~~ 87 (132)
.++.+.++|++++++++++|+++|++++++++++++.||||.++|+++..+++|+++|||+|+++++.++.+.. .+++
T Consensus 6 ~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~ 85 (161)
T PRK14893 6 LGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGL 85 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999998854322 3457
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
++.++|.++++|+++|++++.|++.||+++++++++++|||.
T Consensus 86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe 127 (161)
T PRK14893 86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPD 127 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 889999999999999999999999999999999999999996
No 7
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=99.92 E-value=4.3e-26 Score=175.30 Aligned_cols=120 Identities=30% Similarity=0.571 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-----
Q 032839 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK----- 85 (132)
Q Consensus 11 ~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~----- 85 (132)
+++|+-+|.+++++++.+|++||+-+.|++.+++..|.||+.+|+++.++|||+.+|||+|+++++..|+++.++
T Consensus 39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~ 118 (196)
T KOG0233|consen 39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG 118 (196)
T ss_pred hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence 446999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 86 ~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
..++++||.+|++|++||+|+++||+++|++|++...++||+|-|
T Consensus 119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tL 163 (196)
T KOG0233|consen 119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTL 163 (196)
T ss_pred cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccc
Confidence 247899999999999999999999999999999999999999865
No 8
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.91 E-value=3.9e-24 Score=169.36 Aligned_cols=106 Identities=27% Similarity=0.417 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhHHHH
Q 032839 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH 95 (132)
Q Consensus 16 ~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g~~~ 95 (132)
.+|++++++++++|+++|+++++++++++++||||.++|+++.++++|+++|||+++++++.++.++ .++|.+
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~ 74 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM 74 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999987542 489999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 96 LSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 96 l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
|++||++|++++ |++.||++|++++++++|||.
T Consensus 75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~ 107 (213)
T PRK06271 75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDS 107 (213)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH
Confidence 999999999999 899999999999999999984
No 9
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.91 E-value=6.8e-24 Score=167.96 Aligned_cols=113 Identities=24% Similarity=0.342 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHh
Q 032839 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD 91 (132)
Q Consensus 12 ~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~ 91 (132)
..|.+++++++++++++ |++++|+++++++++.+||||.|+|+++.++|||+++|||+|+++++..+.+++ +..+
T Consensus 70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~ 144 (213)
T PRK06271 70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE 144 (213)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence 45899999999999999 789999999999999999999999999999999999999999999999887542 4568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 92 g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
++.++++||++|++++ ||+.||+++++++++++|||..
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~ 182 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDA 182 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999 9999999999999999999963
No 10
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=99.90 E-value=1.4e-23 Score=158.32 Aligned_cols=124 Identities=67% Similarity=1.064 Sum_probs=119.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 032839 7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS 86 (132)
Q Consensus 7 ~~~~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~ 86 (132)
+|.++||+..+|++.+..++++|+++|+.+.+...+....++||+.+|.+++++|++..+|||++++.++..++++..+.
T Consensus 2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~ 81 (156)
T KOG0232|consen 2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA 81 (156)
T ss_pred CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999876656
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
|++++++.++++|+.+|++++.+|+++|+++++++|..+|||.+
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~ 125 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRL 125 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchh
Confidence 89999999999999999999999999999999999999999965
No 11
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.71 E-value=7.3e-17 Score=106.29 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
|.+++++++++++++|+++|+++++++++++.+||||.++|+++..+|+|+++||+++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999999864
No 12
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.61 E-value=4.1e-15 Score=101.67 Aligned_cols=67 Identities=28% Similarity=0.508 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
+.+++++++++++++|+++|+|+++.+.+++.+|||| +|+|+++..+|+|+++||++++++++.++.
T Consensus 8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999999999999 999999999999999999999999998763
No 13
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.59 E-value=7.2e-15 Score=101.81 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
..++|++++++++++|+++|+|.++++++++++||||.++ ++++..+|+|+++||++++++++++.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999765 78999999999999999999998764
No 14
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.58 E-value=9.2e-15 Score=104.31 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
..++|++++++++++||++|+|+++++++++++||||.++|+++..+|+|+++|||+++++++.+.
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999999999999999999999999998754
No 15
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.55 E-value=3.8e-14 Score=97.42 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+..++++++++++++|+++|+|+++++++++++||||.+ +++++..+|.|+++||++++++++.+.
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999954 559999999999999999999998876
No 16
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.55 E-value=3e-14 Score=108.69 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
-+.++++++++++++++|++++|+++++++++.+||||.|+|+++..+|+|+++|||||+++++.+++
T Consensus 91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~ 158 (159)
T PRK06558 91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 48899999999999999999999999999999999999999999999999999999999999988765
No 17
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.54 E-value=4.1e-14 Score=96.75 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
.+.++|+++++ ++++|+++|+|+++++++++++||||.+ +++++..+|+|+++|||+++++++.+.
T Consensus 9 ~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 9 GMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999 9999999999999999999999999955 456899999999999999999998753
No 18
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.54 E-value=4.5e-14 Score=107.91 Aligned_cols=66 Identities=23% Similarity=0.427 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+.+++++++++++++||++|+++++++++++++||||.|.|+++..+|+|+++||||+++++++..
T Consensus 91 ~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 91 LVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998754
No 19
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.51 E-value=1.1e-13 Score=94.97 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+.+++++++++++++|+++|+|+++++++++++||||. ++++++..+|+|+.+||++++++++.+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999996 4557999999999999999999998765
No 20
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.50 E-value=2.1e-13 Score=93.15 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
..+++++++++++++|+++|+|+++++++++++||||.. +++++..+|.|+++||++++++++.+.
T Consensus 7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999965 489999999999999999999998765
No 21
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.43 E-value=1.1e-12 Score=90.45 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
...++|++++++++++|+++|+|+++.++.++++||||.++ ++++..+|+|+.+||++++++++.+.
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999654 57788999999999999999998765
No 22
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.43 E-value=1e-12 Score=88.91 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~ 78 (132)
...++|+++++ ++++|+++|+|.+++++.++++|||| +++++++..+|.|+.+||++++++++.+
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999 99999999999999999999999999 6788999999999999999999999865
No 23
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.42 E-value=1.2e-12 Score=90.85 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
.+.++|++++++++++|+++|+|++..+++++++||||. ++++++..+|.|+.+||++++++++.+.
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~ 78 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999997 4668888999999999999999998776
No 24
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.42 E-value=1.5e-12 Score=99.10 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-hhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRP-ELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P-~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
-+.+++++++++++++++++++|+++++.+++.+||| |+|+|+++..+|+|+++||++++++++..-
T Consensus 88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~ 155 (157)
T PRK08344 88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999 999999999999999999999999998654
No 25
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.39 E-value=2.1e-12 Score=91.93 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+.++|+++++ ++++|+++|+|.++++++++++||||. ++++++..+++|+++||++++++++.+.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999 999999999999999999999999996 5568999999999999999999998753
No 26
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.38 E-value=3e-12 Score=91.87 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
...++|++++++++++|+++|+|.++.++++++.||||... ++++..++.|+.+||++++++++.+.
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~ 100 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999654 58999999999999999999998876
No 27
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.37 E-value=3.5e-12 Score=95.67 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 76 (132)
Q Consensus 12 ~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li 76 (132)
+.+..+++++++++++++|++++|+++++++++.+||||.++|+++..+|.|+.+||+|++++++
T Consensus 76 ~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 76 SALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778899999999999999999999999999999999999999999999999999999999885
No 28
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.35 E-value=6.2e-12 Score=85.74 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
...++|+++++ ++++|+++|+|.+.++.+++.+||||. ++++++..+|.|+.+||++++++++.+.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999 999999999999999999999999995 6679999999999999999999998764
No 29
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.34 E-value=7.7e-12 Score=89.10 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
...++++++++++++|+++|+|.+.++.+++++||||. ++++++..+|.|+.+||++++++++.+..
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999995 67799999999999999999999998874
No 30
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.30 E-value=1.4e-11 Score=81.79 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839 21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (132)
Q Consensus 21 la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li 76 (132)
++.+++++|+++|+|.+.++++++++||||. ++++++..+|.|+.+||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999995 5679999999999999999999975
No 31
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.27 E-value=2.1e-11 Score=80.88 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII 76 (132)
Q Consensus 20 ~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li 76 (132)
+++++++++|+++|+|++..++++++.||||. ++++++..++.|+.+||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999995 5679999999999999999999974
No 32
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.26 E-value=5e-11 Score=81.97 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
..++|++++++++++|+++|+|.+.++++++++||||. ++++++..+|.|++.+|.+++.+++.+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999995 6779999999999999998888877654
No 33
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.24 E-value=2.1e-11 Score=78.99 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839 26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 26 aaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~ 78 (132)
+++|+++|+|.+.++++++++||||. ++++++..+|.|+.+||++++++++.+
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999997 788999999999999999999999865
No 34
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.23 E-value=3.3e-11 Score=82.67 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHH
Q 032839 20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI 75 (132)
Q Consensus 20 ~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~l 75 (132)
.++.+++++|+++|+|.+..+++++++||||. ++++++..+|.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999999999999999995 567999999999999999999986
No 35
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.23 E-value=5.4e-11 Score=89.44 Aligned_cols=64 Identities=11% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 77 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~ 77 (132)
+.+++++++++++.+.|++.+|+++.+.+.+..||||.|+|+++..+|+|+.+||+|++++++.
T Consensus 79 ~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 79 WLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999999999999998763
No 36
>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]
Probab=98.75 E-value=6.5e-09 Score=78.93 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=66.0
Q ss_pred chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 10 ~~~~--~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
+.++ +..+++++.+++++.++++.+++.+.+......|||+.|..+++..+|.|++++|||+++..+.++.
T Consensus 82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4555 7889999999999999999999999999999999999999999999999999999999999887653
No 37
>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]
Probab=98.54 E-value=1.2e-07 Score=73.60 Aligned_cols=68 Identities=19% Similarity=0.465 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN 81 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~ 81 (132)
+..+++++.+|++++-.++.+|+.|+++.-+-++||.+|.|.++..+|+..++++|+|+++++..|.+
T Consensus 126 y~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~ 193 (196)
T KOG0233|consen 126 YALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKAS 193 (196)
T ss_pred HHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999988754
No 38
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=98.17 E-value=3.1e-06 Score=57.83 Aligned_cols=39 Identities=41% Similarity=0.596 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
+++.++++|+.+|++++.+|+.||+++++++++.+|||.
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~ 44 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE 44 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 789999999999999999999999999999999999996
No 39
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=98.06 E-value=8e-06 Score=56.07 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=38.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
+.+++.++++|+.+|++++.+|++||+++++++++++|||.
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe 44 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPE 44 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 45677899999999999999999999999999999999996
No 40
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=97.91 E-value=1.9e-05 Score=54.90 Aligned_cols=44 Identities=7% Similarity=0.088 Sum_probs=40.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.++..++..+++|+.+|++.+.+|+.||+++++.+++++|||..
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~ 46 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDA 46 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 45678889999999999999999999999999999999999963
No 41
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=97.90 E-value=2.2e-05 Score=54.16 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.++.++...+++|+.+|++.+.+|+.||+++++++++++|||..
T Consensus 2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~ 45 (82)
T PRK13468 2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDA 45 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 34677888999999999999999999999999999999999963
No 42
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=97.89 E-value=2.2e-05 Score=51.45 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
|.++++|+++|++.+.|++.||+++++.+++.+|||.
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~ 37 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5689999999999999999999999999999999996
No 43
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=97.82 E-value=4.1e-05 Score=52.65 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=38.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
...++.++++|+++|++.+.+|+.||+++++.+++++|||.
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe 44 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE 44 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 34567899999999999999999999999999999999996
No 44
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=97.73 E-value=5.6e-05 Score=54.09 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=38.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
....+...+++|+++|++++.||+.||+++++++++++|||.
T Consensus 30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe 71 (102)
T PRK06251 30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRD 71 (102)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 455677889999999999999999999999999999999985
No 45
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=97.62 E-value=0.00012 Score=50.08 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=37.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
+..++.++++|+++ ++.+.+|+.||+++++.+++++|||.
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe 45 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPE 45 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCch
Confidence 46788999999999 99999999999999999999999996
No 46
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=97.30 E-value=0.0005 Score=47.01 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
-.+...+++|+.+|++.+.+|+.||++++..+++++|||..
T Consensus 4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~ 44 (78)
T PRK06876 4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPEL 44 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 34667899999999999999999999999999999999963
No 47
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=97.22 E-value=0.00075 Score=49.68 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
--++|++.+. +...|++.|+|.+=.+-+-+.+|||++ |.-.++..++.|+.++|-+.++|++.+.
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4678887765 556789999999999999999999985 6668899999999999999999998763
No 48
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=97.11 E-value=0.0011 Score=45.66 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
..+...+++|+.+|++.+.+|+.+|.+.++.+++++|||..
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa 45 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEA 45 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 45668899999999999999999999999999999999964
No 49
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=97.05 E-value=0.0014 Score=45.54 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=38.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
...+...+++|+.+|++.+.+|+.+|.++++.+++.+|||..
T Consensus 11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~ 52 (85)
T PRK13471 11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEM 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHH
Confidence 456677899999999999999999999999999999999963
No 50
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=96.96 E-value=0.0015 Score=47.01 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=39.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+...+...+++|+.+|++.+.+|+.||++.+..+++++|||..
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~ 68 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGL 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 4567788999999999999999999999999999999999964
No 51
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=96.33 E-value=0.0068 Score=43.38 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.+...+++|+.+|++.+.+|+.+|.+.++.+++++|||..
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa 51 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPEL 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 4668899999999999999999999999999999999974
No 52
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=96.27 E-value=0.0077 Score=40.76 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
.+...+++|+.+ ++.+.+|+.||++.++.+++++|||-
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe 41 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPS 41 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCch
Confidence 456789999999 99999999999999999999999996
No 53
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=96.00 E-value=0.011 Score=42.29 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+..+++|+.+ ++.+.+|+.||+++++.+++++|||..
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea 67 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEA 67 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHH
Confidence 5789999999 999999999999999999999999964
No 54
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=95.98 E-value=0.013 Score=39.93 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=37.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
..++...+++|+.+ ++...+|+.||.+.+..+++++|||..
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~ 44 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSL 44 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhh
Confidence 45667889999999 999999999999999999999999974
No 55
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=95.25 E-value=0.026 Score=37.46 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 98 SGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 98 aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.++.+|++.+.+|+.||.+.+..+++++|||..
T Consensus 4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea 36 (66)
T PRK13466 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEM 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 357889999999999999999999999999964
No 56
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=94.24 E-value=0.053 Score=35.97 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 100 LACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 100 l~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+..|++.+.+|+.+|.+.+..+++++|||..
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~ 36 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEM 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 3456777889999999999999999999974
No 57
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=94.22 E-value=0.067 Score=36.78 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=32.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.+..++...+++|+ +.+.+|+.+|.+....+++++|||..
T Consensus 12 ~~~~~~~~~ig~Gl----aaiGagiG~G~~~~~a~e~iARqPEa 51 (80)
T PRK07874 12 ETTFTGLGAVGYGL----AAIGPGIGVGIVVGKALEGMARQPEM 51 (80)
T ss_pred HHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCHhH
Confidence 45667776666664 45789999999999999999999964
No 58
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=88.92 E-value=0.39 Score=34.70 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=28.4
Q ss_pred chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032839 10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGV 41 (132)
Q Consensus 10 ~~~~--~~~lGa~la~glaaiGsa~G~g~ag~a~ 41 (132)
++.+ +.+++++++++++++.|++.+|++|++.
T Consensus 74 ~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 74 YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 5554 8999999999999999999999999853
No 59
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=85.39 E-value=0.46 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 106 GLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 106 ~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
.+.+|+.||.+.++.+++++|||..
T Consensus 2 a~GagiG~G~i~~~a~~~iaRqPe~ 26 (58)
T TIGR01260 2 AIGAAIGIGILGGKFLESAARQPEL 26 (58)
T ss_pred cchhHHHHHHHHHHHHHHHHcChhH
Confidence 3568999999999999999999964
No 60
>PRK08124 flagellar motor protein MotA; Validated
Probab=37.44 E-value=1.2e+02 Score=24.57 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
++|.++.+|..+.+.- .+. .+ .+|+..+.. ++-+=.-+.||+++|.++...
T Consensus 153 ~AP~lGllGTVlGlI~-~f~--------------~l-~~p~~lg~g---Ia~ALitT~yGl~vA~~~~~P 203 (263)
T PRK08124 153 YAPTLGVLGAVIGLIA-ALG--------------NL-SDIEKLGHA---ISAAFVATLLGIFTGYVLWHP 203 (263)
T ss_pred HhHHHHHHHHHHHHHH-HHH--------------hc-cCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776665531 111 11 257664433 222335678999999886554
No 61
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=37.07 E-value=1.3e+02 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=20.9
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 45 GVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 45 ~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+..+|+..+..+ .++|.. ++||.+.+.++...
T Consensus 191 l~~dp~~lG~~i-A~Alv~--TlyGv~lAn~i~~P 222 (282)
T TIGR03818 191 IDGPPEVLGVLI-AAALVG--TFLGILLAYGFVGP 222 (282)
T ss_pred cCCCHHHHHHHH-HHHHHH--HHHHHHHHHHHHHH
Confidence 335888766543 344444 49999999996543
No 62
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=34.21 E-value=1.5e+02 Score=24.10 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
++|.++.+|..+.+.-+ ++ .+ .+|+..+. .++-+=.-+.||++++.++...
T Consensus 149 ~aP~lGllGTVlGlI~~-~~--------------~l-~~p~~lg~---gIa~ALitT~yGl~~An~v~~P 199 (254)
T PRK08990 149 VAPAMGMIGTLIGLVAM-LS--------------NM-DDPKSIGP---AMAVALLTTLYGAVLANMVAIP 199 (254)
T ss_pred HhHHHHHHHHHHHHHHH-HH--------------hc-cCHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777766665311 11 11 26766544 2233335678999998887654
No 63
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=33.98 E-value=89 Score=20.02 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032839 57 VPVVMAGVLGIYGLIIAVIIS 77 (132)
Q Consensus 57 i~~a~~e~~~IYGlVva~li~ 77 (132)
.++.-...++-|||++.++-+
T Consensus 29 ~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 29 FPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555688999999998865
No 64
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=33.88 E-value=2.1e+02 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 51 LVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 51 ~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
...++.+.+..|-.+|+=-|++..++..+
T Consensus 61 M~rRm~~~~GiP~~lG~~~f~~~y~l~~~ 89 (153)
T PF11947_consen 61 MLRRMAVFVGIPTALGVAVFVVFYYLKSR 89 (153)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHhc
Confidence 35578888888888888888877777665
No 65
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=30.30 E-value=1.3e+02 Score=18.21 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032839 56 IVPVVMAGVLGIYGLIIAVIIS 77 (132)
Q Consensus 56 li~~a~~e~~~IYGlVva~li~ 77 (132)
+.++.-...++-||+++.+.-.
T Consensus 15 l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 15 IWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556688899999998765
No 66
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=29.59 E-value=1.9e+02 Score=23.91 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
++|.++.+|+.+.+... .+.+ .+|+..++.+ +.+=+-++||.+.+.++...+
T Consensus 157 ~APafGmiGTviGLI~m---------------L~~L-~dp~~IG~~m---AvAlvtTlYGv~~Anlif~Pi 208 (271)
T PRK06926 157 YAPAWGMIGTLVGLVLM---------------LKNL-NDPSTLGPNM---AIALLTTLYGTLLANLVFLPI 208 (271)
T ss_pred HchHHHHHHHHHHHHHH---------------HHhc-CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46667777766555221 2222 3677655432 233356789999999876543
No 67
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=28.62 E-value=1.5e+02 Score=18.37 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032839 57 VPVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 57 i~~a~~e~~~IYGlVva~li~~ 78 (132)
.++.-...++-||+++.+.-..
T Consensus 21 ~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 21 FPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556888999999987654
No 68
>PRK08456 flagellar motor protein MotA; Validated
Probab=27.76 E-value=2.2e+02 Score=22.98 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 032839 64 VLGIYGLIIAVIISTGI 80 (132)
Q Consensus 64 ~~~IYGlVva~li~~~i 80 (132)
.-+.||++++.++...+
T Consensus 187 vtT~yGl~vAn~~~~Pi 203 (257)
T PRK08456 187 TATVTGIMGSYALFGPW 203 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999998876543
No 69
>PRK12482 flagellar motor protein MotA; Provisional
Probab=26.57 E-value=2.8e+02 Score=23.06 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
+.|.++.+|+.+.+... .+.+..+|+..+..+ .++| +-++||.+.+.++...+
T Consensus 171 ~aPa~GiiGtvlGLI~m---------------L~~L~d~p~~IG~~i-AvAL--vtTfYGv~lAn~i~~Pi 223 (287)
T PRK12482 171 AMPGFGICAAVLGIIIT---------------MQSIDGSIAEIGLKV-AAAL--VGTFLGVFICYCLMDPL 223 (287)
T ss_pred HchHHHHHHHHHHHHHH---------------HHhcCCCHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHH
Confidence 45667777766655221 334444588766543 3333 45789999999976543
No 70
>PRK09110 flagellar motor protein MotA; Validated
Probab=21.91 E-value=3.6e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=20.8
Q ss_pred hcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 44 MGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 44 a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
.+..+|+..+..+ .++| +-++||.+.+.++...
T Consensus 190 ~l~~dp~~iG~~i-AvAl--v~TlyGi~lAn~i~~P 222 (283)
T PRK09110 190 SIDQPPAVLGALI-GAAL--VGTFLGILLAYGFVGP 222 (283)
T ss_pred hcCCCHHHHHHHH-HHHH--HHHHHHHHHHHHHHHH
Confidence 3445787755432 2233 4578999999987643
No 71
>PF14851 FAM176: FAM176 family
Probab=21.57 E-value=3.2e+02 Score=20.79 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032839 60 VMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVG 117 (132)
Q Consensus 60 a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~g 117 (132)
.+-..++.|..|-. . --....+|-.|.|.||.-..+.+-.-+.|
T Consensus 4 llSnsLaaya~I~~-------~-------PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 4 LLSNSLAAYAHIRD-------N-------PERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHh-------C-------hHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45566777777621 1 24677889999999999999999887777
No 72
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.89 E-value=1.9e+02 Score=16.71 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032839 58 PVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 58 ~~a~~e~~~IYGlVva~li~~ 78 (132)
..++=+.+.+||+|+..+...
T Consensus 5 CYiLDgiL~iYgiiiT~L~~R 25 (33)
T PF11628_consen 5 CYILDGILFIYGIIITALYCR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 345667889999998877543
Done!