Query 032839
Match_columns 132
No_of_seqs 170 out of 928
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 1.4E-31 4.9E-36 202.0 11.4 127 1-130 1-127 (156)
2 2xqu_A C15_RING, ATP synthase 99.6 1.2E-15 4.1E-20 103.9 9.5 70 11-80 6-79 (82)
3 2x2v_A ATP synthase subunit C; 99.6 8.5E-16 2.9E-20 101.6 8.4 62 16-77 3-68 (69)
4 1wu0_A ATP synthase C chain; A 99.6 5.2E-16 1.8E-20 103.4 7.3 65 14-78 3-71 (72)
5 1a91_A F1FO ATPase subunit C; 99.6 9.2E-15 3.1E-19 99.0 9.1 66 14-79 8-77 (79)
6 2wgm_A ATP synthase subunit C, 99.6 2.7E-15 9.1E-20 103.7 6.0 68 13-81 12-83 (89)
7 2bl2_A V-type sodium ATP synth 99.5 6.4E-14 2.2E-18 105.4 7.8 67 13-79 89-155 (156)
8 2xnd_J ATP synthase lipid-bind 99.5 1.3E-14 4.3E-19 96.7 1.5 63 14-77 5-71 (72)
9 4f4s_A ATP synthase subunit 9, 99.2 2.5E-11 8.6E-16 81.5 7.0 66 13-79 6-75 (76)
10 2xqu_A C15_RING, ATP synthase 98.2 1.7E-06 5.8E-11 58.5 4.2 42 88-129 4-45 (82)
11 1wu0_A ATP synthase C chain; A 98.0 3.5E-06 1.2E-10 55.6 3.9 39 92-130 2-40 (72)
12 2x2v_A ATP synthase subunit C; 97.8 1.5E-05 5.2E-10 52.1 4.1 35 95-129 3-37 (69)
13 2wgm_A ATP synthase subunit C, 97.8 9.3E-06 3.2E-10 55.6 3.2 41 88-129 8-48 (89)
14 1a91_A F1FO ATPase subunit C; 97.7 5.4E-05 1.8E-09 50.7 4.8 38 93-130 8-45 (79)
15 2xnd_J ATP synthase lipid-bind 97.3 2.5E-05 8.5E-10 51.5 -0.7 39 91-130 3-41 (72)
16 4f4s_A ATP synthase subunit 9, 92.2 0.097 3.3E-06 34.7 2.8 41 89-130 3-43 (76)
17 1jb0_L Photosystem 1 reaction 48.5 78 0.0027 23.2 9.5 74 28-106 50-130 (154)
18 2hac_A T-cell surface glycopro 23.0 1E+02 0.0036 16.9 3.6 21 58-78 5-25 (33)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.97 E-value=1.4e-31 Score=201.96 Aligned_cols=127 Identities=25% Similarity=0.439 Sum_probs=118.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 1 MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 1 ~~~~~~~~~~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
|+++|....-+|+++++|++++++++++||+||++++|++++++++||||+++|++++++|||+|+|||+|+++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l 80 (156)
T 2bl2_A 1 MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINL 80 (156)
T ss_dssp CHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556544557899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 81 NPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 81 ~~~~~~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
++ ++++.+++.++++|+++|++++.+|++||+++++++++++|||.+
T Consensus 81 ~~---~~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~ 127 (156)
T 2bl2_A 81 GS---DMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEH 127 (156)
T ss_dssp CT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred cc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 64 267899999999999999999999999999999999999999964
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.64 E-value=1.2e-15 Score=103.89 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839 11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (132)
Q Consensus 11 ~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i 80 (132)
...+.++|++++++++++|+++|+|+++++++++.+||||. ++++++..+|+|+++||++++++++.+..
T Consensus 6 ~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 6 TTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34589999999999999999999999999999999999994 66799999999999999999999998764
No 3
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.64 E-value=8.5e-16 Score=101.58 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 032839 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS 77 (132)
Q Consensus 16 ~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k----~li~~a~~e~~~IYGlVva~li~ 77 (132)
++|++++++++++|+++|+|+++++++++.+||||.+.| +++..+|+|+++||++++++++.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999995555 99999999999999999999975
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.64 E-value=5.2e-16 Score=103.39 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~ 78 (132)
+.++|++++++++++|+++|+|+++++++++.+||||.+. ++++..+|+|+++||++++++++.+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999554 4999999999999999999999864
No 5
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.58 E-value=9.2e-15 Score=98.95 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
+..++++++++++++|+++|+|+++++++++.+|||| +++++++..+|+|+++||+|++++++.+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999 56679999999999999999999998764
No 6
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.57 E-value=2.7e-15 Score=103.65 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGIN 81 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i~ 81 (132)
.+.++|+++++ ++++|+++|+|+++++++++.+||||. |+++++..+|+|+++||++++++++.+..+
T Consensus 12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p 83 (89)
T 2wgm_A 12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANP 83 (89)
T ss_dssp HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999 999999999999999999999999995 899999999999999999999999988643
No 7
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.49 E-value=6.4e-14 Score=105.41 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
.+.+++++++++++++|+++|+|+++++++++.+||||.++|+++..+|+|+++||++++++++.++
T Consensus 89 g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 89 GLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999999999999999999999999999998764
No 8
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.45 E-value=1.3e-14 Score=96.68 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032839 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIS 77 (132)
Q Consensus 14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~ 77 (132)
+.++|+++++ ++++|+++|+|+++++++++.+||||. ++++++..+|+|+++||++++++++.
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568889999 999999999999999999999999995 55789999999999999999999864
No 9
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.22 E-value=2.5e-11 Score=81.55 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (132)
Q Consensus 13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~ 79 (132)
.-.++|++++. ++.+|+++|+|.+..+.+.+..||||. |+.+++..++.|+.+||+|+++|++.+.
T Consensus 6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999998 888999999999999999999999985 6678999999999999999999998763
No 10
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=98.16 E-value=1.7e-06 Score=58.47 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
.+.+++.++++|+.+|++++.||+.||+++++++++++|||.
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe 45 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPE 45 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 367899999999999999999999999999999999999996
No 11
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=98.05 E-value=3.5e-06 Score=55.60 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 92 g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
++.++++|+.+|++++.+|+.||+++++++++++|||..
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~ 40 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPEL 40 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 467899999999999999999999999999999999974
No 12
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=97.85 E-value=1.5e-05 Score=52.10 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 95 HLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 95 ~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
++++|+.+|++.+.||+.||+++++++++++|||.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe 37 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPE 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 48999999999999999999999999999999996
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=97.85 E-value=9.3e-06 Score=55.63 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=39.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC 129 (132)
Q Consensus 88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~ 129 (132)
++.+++.++++|+++ ++++.+|+.||+++++++++++|||.
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe 48 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPE 48 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 467899999999999 99999999999999999999999996
No 14
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=97.67 E-value=5.4e-05 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
..++++++.+|++++.+|+.||+++++++++++|||..
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~ 45 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDL 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 35699999999999999999999999999999999974
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=97.30 E-value=2.5e-05 Score=51.51 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+++.++++||++ ++++.+|+.||+++++++++++|||..
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~ 41 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSL 41 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 456678999999 999999999999999999999999963
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=92.19 E-value=0.097 Score=34.70 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL 130 (132)
Q Consensus 89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~ 130 (132)
+..+....++|+.+ ++..-+|+.||.+..+.+++++|||-+
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~ 43 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSI 43 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhH
Confidence 34566779999997 888889999999999999999999964
No 17
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=48.50 E-value=78 Score=23.23 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhh------HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccchhHhHHHHHHHHH
Q 032839 28 MGAAYGTAKSGVGVASMGVMRPELV------MKSIVPVVMAGVLGIYGLIIAVIISTGINPK-AKSYYLFDGYAHLSSGL 100 (132)
Q Consensus 28 iGsa~G~g~ag~a~~~a~~~~P~~~------~k~li~~a~~e~~~IYGlVva~li~~~i~~~-~~~~~~~~g~~~l~aGl 100 (132)
+|-|-|.-..|-=+.-.=.|++|.- ...=+..++.-.+.+||.+ ..+-++. .++....++|..|.+|.
T Consensus 50 iGmAHGYfL~GPF~~lGPLRnte~a~laGllsaiglv~IlT~~LsiYg~~-----~f~~~~~~~~~l~t~~gWs~Ft~GF 124 (154)
T 1jb0_L 50 VGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLV-----SFQKGGSSSDPLKTSEGWSQFTAGF 124 (154)
T ss_dssp HHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSSCCCSSCGGGSHHHHHHHHHHH
T ss_pred hhhcceeeeechhHhcccCcCcchHHHHHHHHHHHHHHHHHHHHHHhccC-----ccCCCCCCcccccCcccHhHcccce
Confidence 5566777778877777778888742 1222344455567778866 2222111 23456689999999999
Q ss_pred HHHHHH
Q 032839 101 ACGLAG 106 (132)
Q Consensus 101 ~vGl~~ 106 (132)
.+|=++
T Consensus 125 ~iGg~G 130 (154)
T 1jb0_L 125 FVGAMG 130 (154)
T ss_dssp HHHHHH
T ss_pred eeeccc
Confidence 988654
No 18
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=23.02 E-value=1e+02 Score=16.92 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032839 58 PVVMAGVLGIYGLIIAVIIST 78 (132)
Q Consensus 58 ~~a~~e~~~IYGlVva~li~~ 78 (132)
..++=+.+.+||+|+..+...
T Consensus 5 CYiLDgiL~iYgii~T~Ly~R 25 (33)
T 2hac_A 5 CYLLDGILFIYGVILTALFLR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHH
Confidence 345667889999999877653
Done!