BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032841
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V9W|A Chain A, Solution Structure Of Mouse Putative 42-9-9 Protein
Length = 130
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 11/105 (10%)
Query: 8 ATVSSFDNV-------FDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKT 60
AT+++F+ V FDK E ++K F F KD + SWCPDCV AEPVI +
Sbjct: 6 ATMATFEEVSVLGFEEFDKAVKEH-ESKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREG 63
Query: 61 LEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105
L+ +D + VGD+P W++P + FR + K+T VPTL ++
Sbjct: 64 LKHVTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 106
>pdb|1WOU|A Chain A, Crystal Structure Of Human Trp14
Length = 123
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD 66
+ +VS F+ E K F F KD SWCPDCV+AEPV+ + L+ +
Sbjct: 6 EVSVSGFEEFHRAV--EQHNGKTIFAYFTGSKDAGGK-SWCPDCVQAEPVVREGLKHISE 62
Query: 67 DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105
+ VG++P W++P + FR N K+T VPTL ++
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKN--LKVTAVPTLLKY 99
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104
+WC C PV+ + EA D + + + V + P S+F + +PTL
Sbjct: 27 AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---------ETTSQFGIMSIPTLIL 77
Query: 105 WEN 107
++
Sbjct: 78 FKG 80
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104
+WC C PV+ + EA D + + + V + P S+F + +PTL
Sbjct: 27 AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---------ETTSQFGIMSIPTLIL 77
Query: 105 WEN 107
++
Sbjct: 78 FKG 80
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104
+WC C PV+ + EA D + + + V + P S+F + +PTL
Sbjct: 27 AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---------ETTSQFGIMSIPTLIL 77
Query: 105 WEN 107
++
Sbjct: 78 FKG 80
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104
+WC C PV+ + EA D + + + V + P S+F + +PTL
Sbjct: 27 AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---------ETTSQFGIMSIPTLIL 77
Query: 105 WEN 107
++
Sbjct: 78 FKG 80
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYV 75
+CP C EPV+ K ++ DD+ L +V
Sbjct: 52 FCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 81
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYV 75
+CP C EPV+ K ++ DD+ L +V
Sbjct: 35 FCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYV 75
+CP C EPV+ K ++ DD+ L +V
Sbjct: 35 FCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64
>pdb|1JX9|A Chain A, Penicillin Acylase, Mutant
pdb|1K5Q|A Chain A, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|A Chain A, Penicillin Acylase, Mutant Complexed With Ppa
pdb|1K7D|A Chain A, Penicillin Acylase With Phenyl Proprionic Acid
Length = 209
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
++ PD +RA+ SP+D+++LQ Y W
Sbjct: 73 NYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 104
>pdb|1PNK|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|A Chain A, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1AI4|A Chain A, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|A Chain A, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|A Chain A, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|A Chain A, Penicillin Acylase Complexed With Phenol
pdb|1AJN|A Chain A, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|A Chain A, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|A Chain A, Penicillin Acylase Complexed With Thiopheneacetic Acid
pdb|1FXH|A Chain A, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|A Chain A, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
pdb|1GM8|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1H2G|A Chain A, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 209
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
++ PD +RA+ SP+D+++LQ Y W
Sbjct: 72 NYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 103
>pdb|1GM9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
++ PD +RA+ SP+D+++LQ Y W
Sbjct: 72 NYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 103
>pdb|1E3A|A Chain A, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
pdb|1GK9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 30 NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
+F+ F DKD ++ PD +RA+ SP+D+++LQ Y W
Sbjct: 61 DFVKF--DKD--IRRNYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 103
>pdb|1GKF|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 30 NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
+F+ F DKD ++ PD +RA+ SP+D+++LQ Y W
Sbjct: 61 DFVKF--DKD--IRRNYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 103
>pdb|1GM7|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
++ PD +RA+ SP+D+++LQ Y W
Sbjct: 72 NYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 103
>pdb|1KEC|A Chain A, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 209
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW 81
++ PD +RA+ SP+D+++LQ Y W
Sbjct: 73 NYWPDAIRAQ-----IAALSPEDMSILQGYADGMNAW 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,969,885
Number of Sequences: 62578
Number of extensions: 147293
Number of successful extensions: 324
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 24
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)