BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032841
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMN4|TCLOT_ARATH Thioredoxin-like protein Clot OS=Arabidopsis thaliana GN=At5g42850
PE=2 SV=1
Length = 134
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Query: 1 MPLNLSDATVSSFDNVFDKFKS-EAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYK 59
M L DA S+ ++ + KS E ++K NFILFLAD DP+T SWCPDCVRAEPVIYK
Sbjct: 1 MTLKKVDANPSTLESSLQELKSDETSRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYK 60
Query: 60 TLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEA 119
TLE P+++ L++AY GDRPTWR P HP+RV+SRFKLTGVPTL RW+ D V GRLEDH+A
Sbjct: 61 TLEEFPEEVKLIRAYAGDRPTWRTPAHPWRVDSRFKLTGVPTLVRWDGDSVKGRLEDHQA 120
>sp|Q5Z9Z3|OCLOT_ORYSJ Thioredoxin-like protein Clot OS=Oryza sativa subsp. japonica
GN=Os06g0320000 PE=2 SV=1
Length = 139
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 6/137 (4%)
Query: 1 MPLNLSDATVSSFDNVFDKF--KSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIY 58
M + DATV+ FD FDK + + K +LFLAD+D S++ +WCPDC AEPVIY
Sbjct: 1 MTVEKVDATVADFDAHFDKLFAAGDDAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIY 60
Query: 59 KTLEASPD----DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRL 114
+EA+ D+ LL+AYVGD+PTWR+P HP+R + RF+LTGVPTL RWEN + RL
Sbjct: 61 DRVEAAAKGKEKDVVLLRAYVGDKPTWRDPAHPWRADPRFRLTGVPTLIRWENGAAAARL 120
Query: 115 EDHEAHLEHKIKALLSA 131
D EAHL K+ A+++A
Sbjct: 121 GDDEAHLADKVDAVVNA 137
>sp|Q9CQM5|TXD17_MOUSE Thioredoxin domain-containing protein 17 OS=Mus musculus GN=Txndc17
PE=1 SV=1
Length = 123
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEA 63
+ +V F+ FDK E + K F F KD + SWCPDCV AEPVI + L+
Sbjct: 3 TFEEVSVLGFEE-FDKAVKEH-EGKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREGLKH 59
Query: 64 SPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105
+D + VGD+P W++P + FR + K+T VPTL ++
Sbjct: 60 VTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 99
>sp|Q6DBT3|TXD17_DANRE Thioredoxin domain-containing protein 17 OS=Danio rerio GN=txndc17
PE=2 SV=1
Length = 123
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQ 85
K K F F DKD SWCPDCV+AEPV+ L P+ + VGDRP W++
Sbjct: 23 KGKEIFAYFSGDKDEHGK-SWCPDCVKAEPVVRAELPHLPEGTVFIYCQVGDRPYWKDSN 81
Query: 86 HPFRVNSRFKLTGVPTLFRW 105
+ F+ KLTGVPTL R+
Sbjct: 82 NDFK--KTLKLTGVPTLLRY 99
>sp|Q9BRA2|TXD17_HUMAN Thioredoxin domain-containing protein 17 OS=Homo sapiens GN=TXNDC17
PE=1 SV=1
Length = 123
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD 66
+ +VS F+ E K F F KD SWCPDCV+AEPV+ + L+ +
Sbjct: 6 EVSVSGFEEFHRAV--EQHNGKTIFAYFTGSKDAGGK-SWCPDCVQAEPVVREGLKHISE 62
Query: 67 DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105
+ VG++P W++P + FR N K+T VPTL ++
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKN--LKVTAVPTLLKY 99
>sp|Q5REA8|TXD17_PONAB Thioredoxin domain-containing protein 17 OS=Pongo abelii GN=TXNDC17
PE=2 SV=1
Length = 123
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD 66
+ +VS F+ E K F F KD SWCPDCV+AEPV+ + L+ +
Sbjct: 6 EVSVSGFEEFHRAV--EQHNGKTIFAYFTGSKDAGGK-SWCPDCVQAEPVVREGLKHISE 62
Query: 67 DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105
+ VG++P W++P + FR N K+T VPTL ++
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKN--LKVTAVPTLIKY 99
>sp|Q9P7L1|YOSC_SCHPO Thioredoxin domain-containing protein C21C3.12c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC21C3.12c PE=3 SV=1
Length = 124
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 1 MPLNLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKT 60
M L L ++ S+ NV KN+ F+ +LA DP T WCP VRA ++
Sbjct: 1 MLLPLKESLESTLANV--------AKNETLFVAYLASVDPRTKQPWCP-TVRAALPLFNN 51
Query: 61 LEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEND 108
S + ++ YVG+ P W+ P + FRV +F ++ VPTL ++ D
Sbjct: 52 AFNSSKKLNVVHVYVGNMPQWKTPHNEFRV--KFGISAVPTLGKYTRD 97
>sp|E9AIE8|MTND_LEIBR 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Leishmania
braziliensis GN=LBRM_20_5150 PE=3 SV=1
Length = 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 29 ANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWR-----N 83
A I DP+T SWCPDC+ A+P + + +A P R N
Sbjct: 227 ALMIFLTGSTDPTTGASWCPDCIPAKPQVAQRFAELQGKYGEERAIFLQLPVERAGYLGN 286
Query: 84 PQHPFRVNSRFKLTGVPTLF 103
P++P+R + +L VPTL
Sbjct: 287 PEYPYRKHPTLQLASVPTLL 306
>sp|A4HYT9|MTND_LEIIN 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Leishmania
infantum GN=LINJ_20_0980 PE=3 SV=1
Length = 344
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTL-----EASPDDIALLQAYVGDRPTWRNPQH 86
I DP+T SWCPDCV A+P + + + LQ V NP
Sbjct: 230 IYLTGSTDPTTGESWCPDCVLAKPHVATRFAELRGKYGEERAIFLQLPVERASYLGNPNF 289
Query: 87 PFRVNSRFKLTGVPTLF 103
P+R + +L VPTL
Sbjct: 290 PYRTHPTLQLASVPTLL 306
>sp|Q4QCU9|MTND_LEIMA 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Leishmania
major GN=LMJF_20_0970 PE=3 SV=1
Length = 344
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 32 ILFLADKDPSTSLSWCPDCVRAEPVI---YKTLEAS--PDDIALLQAYVGDRPTWRNPQH 86
I DP+T SWCPDCV A+ + + L+ + + LQ V NP
Sbjct: 230 IYLTGSTDPTTGESWCPDCVLAKLHVARRFAELQGTYGKEHAIFLQLPVERASYLGNPNF 289
Query: 87 PFRVNSRFKLTGVPTLF 103
+R + +L VPTL
Sbjct: 290 FYRTHPILQLASVPTLL 306
>sp|P37718|ACSC_GLUXY Cellulose synthase operon protein C OS=Gluconacetobacter xylinus
GN=acsC PE=1 SV=1
Length = 1302
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 17 FDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIAL 70
K++S AP A A+K +LSW P P++ K L+A P D AL
Sbjct: 243 LQKYQSSAPVEAAT-----AEKSYRQTLSWLPVTPETLPLMQKWLDAHPSDSAL 291
>sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA OS=Bacillus subtilis
(strain 168) GN=yprA PE=3 SV=1
Length = 749
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 3 LNLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLE 62
L+ D TV++ +F K K +N + + L +++ TS +W E + KTLE
Sbjct: 584 LHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTSAAWLEIKTADEDIGEKTLE 643
Query: 63 ASPDDIA-LLQAYVGDRPTW----RNPQHPFRVNSRFKL--TGVPTLFRWEN 107
I+ +LQ V P + RN H V S+ K TG+PT+F +++
Sbjct: 644 QLLLGISNVLQHIV---PVYIMCDRNDVH---VVSQIKAAHTGLPTIFLYDH 689
>sp|Q52KR3|PRUN2_MOUSE Protein prune homolog 2 OS=Mus musculus GN=Prune2 PE=2 SV=2
Length = 3084
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 32 ILFLADKDPSTSLSWCPD-CVRAE--------PVIYKTLEASPDDIALLQAYVGDRPTWR 82
IL D D ++ S PD C +E +Y LE P + +L + + D PTW
Sbjct: 2071 ILTHCDHDSNSQASSSPDVCHDSEGEQKMEKHTAVYLGLEVEPSEFSLTEPNMNDEPTWE 2130
Query: 83 NPQHPFRVNSRF 94
Q NS
Sbjct: 2131 PEQESLPHNSEL 2142
>sp|Q8UJ04|DEOB_AGRT5 Phosphopentomutase OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=deoB PE=3 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 55 PVIYKTLEASPDDIALLQAYVGDRPTWRNPQH 86
P I++ + +P DIALL A G PTWR H
Sbjct: 329 PEIHRKM--APGDIALLTADHGCDPTWRGTDH 358
>sp|Q9WX63|BCSC3_GLUXY Cellulose synthase 1 operon protein C OS=Gluconacetobacter xylinus
GN=bcsCI PE=3 SV=1
Length = 1325
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 43 SLSWCPDCVRAEPVIYKTLEASPDDIAL 70
+LSW P +P++ + L A PDD AL
Sbjct: 250 TLSWLPVTAETQPLMQQWLTAHPDDTAL 277
>sp|Q98PL5|THIO_MYCPU Thioredoxin OS=Mycoplasma pulmonis (strain UAB CTIP) GN=trxA PE=3
SV=1
Length = 109
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 23 EAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVI 57
E K NF+ F A WCPDCV +PVI
Sbjct: 11 EKIKKGVNFVEFAA--------PWCPDCVMMKPVI 37
>sp|Q5QVU3|DSBD_IDILO Thiol:disulfide interchange protein DsbD OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=dsbD PE=3
SV=1
Length = 568
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 46 WCPDCVRAEPVIY--KTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103
WC C E + + ++A + L+QA V RN + SR+K+ G+PT+
Sbjct: 481 WCVACKEFEQYTFSDEQVQAQFQEFKLIQADVT-----RNNAQDVEILSRYKVLGLPTIL 535
Query: 104 RWEND-------IVSGRL--EDHEAHLE 122
++ + V+G + ED + HLE
Sbjct: 536 FFDPEGNERPEYRVTGYMNAEDFKKHLE 563
>sp|Q4P456|SRB8_USTMA Mediator of RNA polymerase II transcription subunit 12
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SRB8
PE=3 SV=1
Length = 1876
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 66 DDIALLQAYVGDRPTWRNPQHP 87
DD L +AY +RP WR P HP
Sbjct: 30 DDTRLPEAYQQERPPWRPPLHP 51
>sp|Q9XWJ1|SMG9_CAEEL Protein smg-9 OS=Caenorhabditis elegans GN=smg-9 PE=3 SV=1
Length = 385
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 ATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLE 62
A+++ FD + + E KN+ +F + A D L C + +R + ++KTL+
Sbjct: 303 ASLNEFDEQIAELREELQKNREDFTVETAAMDEKKWLDMCREVIR-DKTLHKTLK 356
>sp|Q5I0H9|PDIA5_RAT Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2
SV=1
Length = 517
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 16 VFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75
V D F+ K K ++F A WCP C + P T +A DD + A V
Sbjct: 401 VGDNFRETLKKKKHTLVMFYA--------PWCPHCKKVIPHFTATADAFKDDRKIACAAV 452
>sp|Q14554|PDIA5_HUMAN Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1
Length = 519
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 16 VFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75
V D F+ K K ++F A WCP C + P T +A DD + A V
Sbjct: 403 VGDNFRETLKKKKHTLVMFYA--------PWCPHCKKVIPHFTATADAFKDDRKIACAAV 454
>sp|Q07QF5|Y1881_RHOP5 UPF0260 protein RPE_1881 OS=Rhodopseudomonas palustris (strain
BisA53) GN=RPE_1881 PE=3 SV=1
Length = 170
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 48 PDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP--------QHPFRVNSRFKLTGV 99
PDCVR P +TL P A G W +P H V+ R ++ G+
Sbjct: 80 PDCVRLTPANVRTLSWLPSSCAYRLVAEGRDLYWWHPLVSGDPDTVHEAGVSVRGRVEGL 139
Query: 100 PTLFRWENDIVSGRLEDH 117
E ++ LEDH
Sbjct: 140 ------EGEVSDAELEDH 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,297,093
Number of Sequences: 539616
Number of extensions: 1844311
Number of successful extensions: 4023
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4003
Number of HSP's gapped (non-prelim): 24
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)