Query 032841
Match_columns 132
No_of_seqs 200 out of 1138
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06110 DUF953: Eukaryotic pr 100.0 9.2E-31 2E-35 172.5 7.9 119 9-131 1-119 (119)
2 cd02952 TRP14_like Human TRX-r 99.9 2.9E-27 6.2E-32 156.4 11.7 117 6-130 2-119 (119)
3 KOG3425 Uncharacterized conser 99.9 3.9E-27 8.5E-32 152.7 11.1 118 10-131 9-126 (128)
4 KOG0910 Thioredoxin-like prote 99.9 8.7E-24 1.9E-28 143.1 10.1 103 8-130 45-149 (150)
5 KOG0907 Thioredoxin [Posttrans 99.9 1.1E-22 2.3E-27 132.2 9.9 84 26-130 20-103 (106)
6 cd02954 DIM1 Dim1 family; Dim1 99.9 3.1E-22 6.7E-27 131.3 9.9 75 26-117 13-87 (114)
7 PHA02278 thioredoxin-like prot 99.9 1.5E-21 3.2E-26 126.4 9.5 79 26-117 13-91 (103)
8 cd02985 TRX_CDSP32 TRX family, 99.9 3.6E-21 7.7E-26 124.4 10.0 78 26-118 14-91 (103)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 8.3E-21 1.8E-25 122.3 8.6 101 5-129 3-104 (104)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.3E-20 2.9E-25 123.8 9.2 102 4-128 10-112 (113)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 9.1E-21 2E-25 121.6 8.2 98 5-128 3-100 (101)
12 PF00085 Thioredoxin: Thioredo 99.8 2.5E-20 5.4E-25 118.9 10.0 100 7-131 3-102 (103)
13 cd02948 TRX_NDPK TRX domain, T 99.8 3.5E-20 7.6E-25 119.4 10.5 84 26-130 16-100 (102)
14 cd03065 PDI_b_Calsequestrin_N 99.8 2E-20 4.4E-25 124.0 8.3 100 5-130 11-116 (120)
15 cd02956 ybbN ybbN protein fami 99.8 5.8E-20 1.2E-24 116.6 9.7 86 26-130 11-96 (96)
16 cd02999 PDI_a_ERp44_like PDIa 99.8 5.6E-20 1.2E-24 118.3 9.4 84 25-129 16-100 (100)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.8 8.5E-20 1.8E-24 119.9 10.4 99 9-129 8-112 (113)
18 cd02965 HyaE HyaE family; HyaE 99.8 3.4E-20 7.3E-25 121.0 8.3 88 7-118 14-103 (111)
19 PLN00410 U5 snRNP protein, DIM 99.8 1.3E-19 2.8E-24 123.0 10.9 89 10-117 8-98 (142)
20 PRK10996 thioredoxin 2; Provis 99.8 1.4E-19 3.1E-24 122.8 10.2 87 26-131 51-137 (139)
21 KOG0908 Thioredoxin-like prote 99.8 9.7E-20 2.1E-24 131.9 9.6 100 12-131 8-108 (288)
22 PRK09381 trxA thioredoxin; Pro 99.8 5.5E-19 1.2E-23 114.7 11.2 87 26-131 20-106 (109)
23 cd02963 TRX_DnaJ TRX domain, D 99.8 3.1E-19 6.7E-24 116.8 9.3 87 26-131 23-110 (111)
24 cd02957 Phd_like Phosducin (Ph 99.8 3.2E-19 6.9E-24 116.9 9.4 84 27-129 24-112 (113)
25 cd02950 TxlA TRX-like protein 99.8 3.2E-19 6.9E-24 121.5 9.5 90 26-130 19-111 (142)
26 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.4E-19 7.5E-24 115.6 8.2 99 5-129 3-108 (108)
27 cd02987 Phd_like_Phd Phosducin 99.8 2.3E-18 4.9E-23 121.1 11.4 99 12-130 69-172 (175)
28 cd02994 PDI_a_TMX PDIa family, 99.8 1.3E-18 2.9E-23 111.3 9.3 99 4-131 2-101 (101)
29 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.2E-18 2.6E-23 111.3 8.9 97 6-129 3-102 (102)
30 COG3118 Thioredoxin domain-con 99.8 5.3E-19 1.1E-23 131.2 8.2 103 5-130 25-127 (304)
31 cd02984 TRX_PICOT TRX domain, 99.8 4E-18 8.6E-23 108.1 10.5 83 27-129 14-96 (97)
32 cd02962 TMX2 TMX2 family; comp 99.8 2.6E-18 5.6E-23 118.2 10.1 74 26-116 46-126 (152)
33 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.9E-18 4.2E-23 111.8 8.4 102 6-130 3-109 (109)
34 cd02986 DLP Dim1 family, Dim1- 99.8 3.9E-18 8.4E-23 111.4 9.6 69 26-111 13-81 (114)
35 cd02997 PDI_a_PDIR PDIa family 99.8 4.5E-18 9.8E-23 108.9 9.3 87 26-129 16-104 (104)
36 cd02949 TRX_NTR TRX domain, no 99.8 6.8E-18 1.5E-22 107.7 9.9 87 25-130 11-97 (97)
37 TIGR01295 PedC_BrcD bacterioci 99.8 7.4E-18 1.6E-22 112.1 9.5 93 26-130 22-121 (122)
38 PTZ00443 Thioredoxin domain-co 99.7 7.6E-18 1.7E-22 122.4 9.2 107 4-131 31-137 (224)
39 PTZ00051 thioredoxin; Provisio 99.7 1.1E-17 2.4E-22 106.4 8.8 75 26-118 17-91 (98)
40 cd03001 PDI_a_P5 PDIa family, 99.7 1.7E-17 3.6E-22 106.2 9.1 98 7-129 4-102 (103)
41 cd02975 PfPDO_like_N Pyrococcu 99.7 1.2E-17 2.5E-22 109.7 8.4 80 20-117 15-96 (113)
42 TIGR01068 thioredoxin thioredo 99.7 3.5E-17 7.7E-22 103.7 10.2 87 26-131 13-99 (101)
43 cd02953 DsbDgamma DsbD gamma f 99.7 6.4E-18 1.4E-22 108.9 6.8 89 26-130 10-104 (104)
44 cd03000 PDI_a_TMX3 PDIa family 99.7 2.4E-17 5.1E-22 106.3 8.6 86 26-131 14-102 (104)
45 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2.3E-17 5E-22 105.5 8.4 97 7-129 4-104 (104)
46 cd02993 PDI_a_APS_reductase PD 99.7 3.3E-17 7.2E-22 106.6 8.9 104 5-129 3-109 (109)
47 cd02998 PDI_a_ERp38 PDIa famil 99.7 3.4E-17 7.3E-22 104.7 8.6 98 7-129 4-105 (105)
48 TIGR01126 pdi_dom protein disu 99.7 2.9E-17 6.2E-22 104.6 7.9 87 26-131 12-100 (102)
49 cd02988 Phd_like_VIAF Phosduci 99.7 1.6E-16 3.6E-21 113.1 10.7 84 26-130 101-189 (192)
50 cd02951 SoxW SoxW family; SoxW 99.7 1.5E-16 3.2E-21 105.7 8.9 85 25-117 11-105 (125)
51 cd02961 PDI_a_family Protein D 99.7 1.1E-16 2.3E-21 100.9 7.7 85 26-129 14-101 (101)
52 cd02947 TRX_family TRX family; 99.7 1.9E-15 4.1E-20 93.4 10.3 85 26-130 9-93 (93)
53 PTZ00062 glutaredoxin; Provisi 99.7 1.8E-15 3.9E-20 108.5 10.8 65 28-118 18-82 (204)
54 cd02959 ERp19 Endoplasmic reti 99.6 8.2E-16 1.8E-20 101.5 7.8 87 12-117 7-96 (117)
55 TIGR00424 APS_reduc 5'-adenyly 99.6 1.7E-15 3.8E-20 119.8 9.3 107 4-131 352-461 (463)
56 cd02992 PDI_a_QSOX PDIa family 99.6 1.2E-15 2.5E-20 100.3 6.7 84 6-110 4-90 (114)
57 PLN02309 5'-adenylylsulfate re 99.6 5E-15 1.1E-19 117.1 9.4 104 6-131 348-455 (457)
58 cd03007 PDI_a_ERp29_N PDIa fam 99.6 4.8E-15 1E-19 97.5 6.9 103 5-131 3-114 (116)
59 TIGR01130 ER_PDI_fam protein d 99.6 8E-15 1.7E-19 115.3 8.7 100 5-130 3-106 (462)
60 PTZ00102 disulphide isomerase; 99.6 1.2E-14 2.7E-19 115.2 9.5 99 5-130 34-135 (477)
61 KOG0190 Protein disulfide isom 99.6 6.9E-15 1.5E-19 116.4 7.5 101 4-130 26-129 (493)
62 PTZ00102 disulphide isomerase; 99.6 2.8E-14 6.1E-19 113.2 10.6 88 25-131 373-463 (477)
63 cd02982 PDI_b'_family Protein 99.5 1.1E-14 2.4E-19 93.1 5.9 87 26-131 11-101 (103)
64 TIGR01130 ER_PDI_fam protein d 99.5 4.6E-14 9.9E-19 111.0 9.8 96 9-131 352-452 (462)
65 TIGR02187 GlrX_arch Glutaredox 99.5 5.2E-14 1.1E-18 101.8 9.1 76 26-117 19-97 (215)
66 cd03008 TryX_like_RdCVF Trypar 99.5 4.2E-14 9.1E-19 96.7 7.5 80 26-113 24-128 (146)
67 TIGR00411 redox_disulf_1 small 99.5 5.3E-14 1.1E-18 86.4 7.3 77 31-130 3-79 (82)
68 PRK00293 dipZ thiol:disulfide 99.5 5.4E-14 1.2E-18 114.4 8.7 105 10-130 457-567 (571)
69 cd02964 TryX_like_family Trypa 99.5 1E-13 2.2E-18 92.9 7.7 80 26-113 16-115 (132)
70 KOG0190 Protein disulfide isom 99.5 7.9E-14 1.7E-18 110.5 8.1 100 2-130 367-470 (493)
71 PRK15412 thiol:disulfide inter 99.5 1.8E-13 3.9E-18 96.9 9.1 94 26-130 67-177 (185)
72 PHA02125 thioredoxin-like prot 99.5 1.3E-13 2.8E-18 84.1 6.9 72 31-129 2-73 (75)
73 cd03009 TryX_like_TryX_NRX Try 99.5 1.2E-13 2.7E-18 92.1 7.1 80 26-113 17-115 (131)
74 PF13905 Thioredoxin_8: Thiore 99.5 9.5E-14 2.1E-18 87.7 6.2 74 27-108 1-92 (95)
75 TIGR00412 redox_disulf_2 small 99.5 1.3E-13 2.9E-18 84.3 6.3 73 32-129 3-75 (76)
76 cd02955 SSP411 TRX domain, SSP 99.5 1.9E-13 4.2E-18 91.1 7.6 81 25-114 13-97 (124)
77 PRK14018 trifunctional thiored 99.5 2.9E-13 6.4E-18 108.5 9.3 95 26-130 55-170 (521)
78 PF13098 Thioredoxin_2: Thiore 99.5 4.3E-14 9.4E-19 91.7 3.2 95 25-129 3-112 (112)
79 TIGR02740 TraF-like TraF-like 99.5 2.9E-13 6.4E-18 101.1 7.9 79 26-114 165-246 (271)
80 TIGR02738 TrbB type-F conjugat 99.4 8.8E-13 1.9E-17 90.9 8.9 92 26-129 49-149 (153)
81 TIGR00385 dsbE periplasmic pro 99.4 2E-12 4.3E-17 90.5 10.0 93 26-129 62-171 (173)
82 cd03010 TlpA_like_DsbE TlpA-li 99.4 2.2E-12 4.8E-17 85.5 9.5 82 26-117 24-120 (127)
83 PRK03147 thiol-disulfide oxido 99.4 4.6E-12 1E-16 87.9 9.4 95 26-130 60-169 (173)
84 cd02966 TlpA_like_family TlpA- 99.4 6.9E-12 1.5E-16 80.1 8.8 83 26-116 18-116 (116)
85 PF08534 Redoxin: Redoxin; In 99.4 1.4E-12 3.1E-17 88.4 5.7 96 26-128 27-145 (146)
86 cd02960 AGR Anterior Gradient 99.3 5.2E-12 1.1E-16 84.6 7.9 85 12-117 11-99 (130)
87 TIGR02187 GlrX_arch Glutaredox 99.3 6.3E-12 1.4E-16 90.9 8.6 79 29-130 135-213 (215)
88 cd02967 mauD Methylamine utili 99.3 1.4E-12 3E-17 84.8 4.5 79 26-112 20-110 (114)
89 PLN02919 haloacid dehalogenase 99.3 6E-12 1.3E-16 108.5 9.6 84 26-117 419-522 (1057)
90 cd03012 TlpA_like_DipZ_like Tl 99.3 7.7E-12 1.7E-16 83.1 7.9 84 26-117 22-125 (126)
91 cd02973 TRX_GRX_like Thioredox 99.3 3.1E-12 6.7E-17 76.0 4.9 56 31-104 3-58 (67)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 2.4E-11 5.1E-16 79.9 9.2 78 26-117 19-112 (123)
93 cd02958 UAS UAS family; UAS is 99.3 2.1E-11 4.4E-16 79.8 7.4 89 12-118 5-98 (114)
94 PF13899 Thioredoxin_7: Thiore 99.3 4.6E-12 9.9E-17 78.4 3.9 75 12-107 5-82 (82)
95 PRK11509 hydrogenase-1 operon 99.3 6.4E-11 1.4E-15 79.5 9.0 90 26-130 33-125 (132)
96 KOG0912 Thiol-disulfide isomer 99.2 9E-12 1.9E-16 93.1 4.9 86 26-130 12-103 (375)
97 KOG4277 Uncharacterized conser 99.2 1.8E-11 3.9E-16 91.7 6.2 70 26-112 42-114 (468)
98 PRK13728 conjugal transfer pro 99.2 6.9E-11 1.5E-15 83.3 8.3 77 31-117 73-157 (181)
99 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 5.7E-11 1.2E-15 74.8 7.1 67 26-112 11-77 (89)
100 KOG2501 Thioredoxin, nucleored 99.2 2.2E-11 4.8E-16 83.4 4.9 76 26-111 32-129 (157)
101 PTZ00056 glutathione peroxidas 99.2 6.4E-11 1.4E-15 84.9 6.6 43 26-76 38-81 (199)
102 TIGR02661 MauD methylamine deh 99.2 2.2E-10 4.7E-15 81.4 8.6 78 26-113 73-162 (189)
103 PLN02399 phospholipid hydroper 99.2 5E-10 1.1E-14 82.1 10.3 97 26-130 98-235 (236)
104 KOG0191 Thioredoxin/protein di 99.1 1.1E-10 2.4E-15 91.0 7.2 85 26-129 46-130 (383)
105 PF14595 Thioredoxin_9: Thiore 99.1 2.3E-10 5E-15 76.8 6.8 79 26-119 40-119 (129)
106 PLN02412 probable glutathione 99.1 6.9E-10 1.5E-14 77.4 8.3 98 26-131 28-166 (167)
107 cd03014 PRX_Atyp2cys Peroxired 99.1 6E-10 1.3E-14 75.2 7.7 96 26-130 25-142 (143)
108 cd03017 PRX_BCP Peroxiredoxin 99.1 5.3E-10 1.1E-14 74.9 6.7 86 26-118 22-130 (140)
109 PF02114 Phosducin: Phosducin; 99.1 4E-09 8.6E-14 78.6 11.6 100 12-131 132-236 (265)
110 TIGR01626 ytfJ_HI0045 conserve 99.0 8.1E-10 1.8E-14 78.2 7.4 81 26-117 58-166 (184)
111 smart00594 UAS UAS domain. 99.0 9.2E-10 2E-14 73.0 7.2 89 11-117 14-111 (122)
112 cd03018 PRX_AhpE_like Peroxire 99.0 1.4E-09 2.9E-14 73.8 8.1 97 26-130 26-148 (149)
113 cd02969 PRX_like1 Peroxiredoxi 99.0 1.1E-09 2.4E-14 76.3 7.7 80 26-113 24-125 (171)
114 PTZ00256 glutathione peroxidas 99.0 2.6E-09 5.6E-14 75.5 8.9 43 26-76 39-83 (183)
115 cd00340 GSH_Peroxidase Glutath 99.0 2.4E-09 5.2E-14 73.3 8.1 42 26-76 21-63 (152)
116 KOG0191 Thioredoxin/protein di 99.0 1.3E-09 2.9E-14 84.9 6.9 103 5-131 146-250 (383)
117 TIGR02540 gpx7 putative glutat 99.0 4.1E-09 8.8E-14 72.2 8.5 42 26-75 21-63 (153)
118 KOG0914 Thioredoxin-like prote 99.0 7.3E-10 1.6E-14 79.5 4.6 80 25-115 142-222 (265)
119 COG0526 TrxA Thiol-disulfide i 98.9 2.9E-09 6.3E-14 67.2 6.4 73 27-116 32-107 (127)
120 PRK09437 bcp thioredoxin-depen 98.9 4.4E-09 9.6E-14 71.9 7.1 86 26-118 29-140 (154)
121 PRK00522 tpx lipid hydroperoxi 98.9 4.3E-09 9.4E-14 73.3 7.2 83 26-117 43-150 (167)
122 PF00578 AhpC-TSA: AhpC/TSA fa 98.9 9.8E-10 2.1E-14 72.0 3.7 77 26-109 24-119 (124)
123 COG4232 Thiol:disulfide interc 98.9 3.8E-09 8.3E-14 85.1 6.6 96 18-130 466-565 (569)
124 KOG1731 FAD-dependent sulfhydr 98.9 5.6E-10 1.2E-14 89.4 1.4 83 5-108 41-126 (606)
125 TIGR02196 GlrX_YruB Glutaredox 98.9 4.8E-09 1E-13 62.3 4.7 73 31-130 2-74 (74)
126 cd03015 PRX_Typ2cys Peroxiredo 98.9 1E-08 2.2E-13 71.7 6.9 84 26-117 28-139 (173)
127 cd01659 TRX_superfamily Thiore 98.8 1.2E-08 2.5E-13 57.7 5.3 63 31-108 1-63 (69)
128 cd02971 PRX_family Peroxiredox 98.7 2.8E-08 6E-13 66.5 5.8 86 26-118 21-130 (140)
129 cd02970 PRX_like2 Peroxiredoxi 98.7 4.4E-08 9.6E-13 66.0 6.6 44 27-78 23-68 (149)
130 TIGR03137 AhpC peroxiredoxin. 98.7 8.1E-08 1.7E-12 68.1 8.0 83 26-116 30-137 (187)
131 TIGR02200 GlrX_actino Glutared 98.7 3.7E-08 8.1E-13 59.3 4.6 63 31-112 2-64 (77)
132 PF13728 TraF: F plasmid trans 98.7 2.1E-07 4.5E-12 67.5 8.9 90 26-125 119-210 (215)
133 COG2143 Thioredoxin-related pr 98.6 3.8E-07 8.2E-12 62.6 8.0 92 18-117 33-135 (182)
134 TIGR02739 TraF type-F conjugat 98.6 5.6E-07 1.2E-11 66.8 9.4 72 27-108 150-223 (256)
135 TIGR02180 GRX_euk Glutaredoxin 98.6 2E-08 4.4E-13 61.5 1.3 62 31-109 1-63 (84)
136 cd02991 UAS_ETEA UAS family, E 98.6 4E-07 8.8E-12 60.0 7.4 102 12-130 5-114 (116)
137 PRK15000 peroxidase; Provision 98.6 2.9E-07 6.4E-12 66.0 7.2 84 26-116 33-143 (200)
138 PRK10382 alkyl hydroperoxide r 98.5 3.9E-07 8.4E-12 64.8 7.4 82 26-115 30-136 (187)
139 KOG1672 ATP binding protein [P 98.5 1.5E-06 3.2E-11 61.5 10.0 86 10-117 71-156 (211)
140 cd02968 SCO SCO (an acronym fo 98.5 4.8E-07 1E-11 60.6 6.7 44 26-77 21-69 (142)
141 PRK13703 conjugal pilus assemb 98.4 2.1E-06 4.5E-11 63.5 8.3 73 27-109 143-217 (248)
142 PRK11200 grxA glutaredoxin 1; 98.4 7.1E-07 1.5E-11 55.3 4.8 66 31-110 3-68 (85)
143 PTZ00137 2-Cys peroxiredoxin; 98.3 1.9E-06 4.1E-11 64.2 7.0 81 26-114 97-204 (261)
144 PRK13190 putative peroxiredoxi 98.3 2.4E-06 5.3E-11 61.3 7.2 79 26-112 26-131 (202)
145 PF03190 Thioredox_DsbH: Prote 98.3 4.3E-07 9.2E-12 63.1 2.2 69 26-111 36-116 (163)
146 PRK10606 btuE putative glutath 98.2 2.9E-06 6.4E-11 60.1 5.6 42 26-76 24-66 (183)
147 PRK13599 putative peroxiredoxi 98.2 5.8E-06 1.3E-10 60.0 7.2 81 26-114 27-135 (215)
148 PF13192 Thioredoxin_3: Thiore 98.2 5.9E-06 1.3E-10 50.2 6.1 68 46-130 9-76 (76)
149 PRK13191 putative peroxiredoxi 98.2 8.1E-06 1.8E-10 59.2 7.2 82 26-115 32-141 (215)
150 PTZ00253 tryparedoxin peroxida 98.1 1.9E-05 4.1E-10 56.5 8.5 84 26-116 35-145 (199)
151 PRK13189 peroxiredoxin; Provis 98.1 7.1E-06 1.5E-10 59.8 6.2 82 26-115 34-143 (222)
152 cd02976 NrdH NrdH-redoxin (Nrd 98.1 1.1E-05 2.4E-10 47.4 5.9 72 31-129 2-73 (73)
153 KOG0911 Glutaredoxin-related p 98.1 7.8E-07 1.7E-11 64.2 0.7 75 26-118 16-90 (227)
154 PF00462 Glutaredoxin: Glutare 98.1 3.4E-06 7.3E-11 48.8 3.2 52 45-109 7-58 (60)
155 TIGR02183 GRXA Glutaredoxin, G 98.1 1.2E-05 2.6E-10 50.0 5.2 56 45-108 8-65 (86)
156 PF13848 Thioredoxin_6: Thiore 98.0 5.3E-05 1.1E-09 52.6 7.9 88 26-131 93-184 (184)
157 cd03029 GRX_hybridPRX5 Glutare 98.0 2.9E-05 6.2E-10 46.4 5.6 64 45-130 9-72 (72)
158 cd03016 PRX_1cys Peroxiredoxin 97.9 2.4E-05 5.2E-10 56.1 5.7 81 28-116 26-135 (203)
159 cd03419 GRX_GRXh_1_2_like Glut 97.9 2.2E-05 4.9E-10 47.7 4.8 61 31-110 2-63 (82)
160 PHA03050 glutaredoxin; Provisi 97.9 8.4E-06 1.8E-10 53.0 3.0 63 31-111 15-80 (108)
161 cd02066 GRX_family Glutaredoxi 97.9 1.6E-05 3.6E-10 46.5 3.9 55 45-112 8-62 (72)
162 PRK10329 glutaredoxin-like pro 97.9 3.7E-05 8.1E-10 47.4 5.5 65 45-129 9-73 (81)
163 KOG0913 Thiol-disulfide isomer 97.9 6.5E-06 1.4E-10 59.9 2.1 71 29-117 41-112 (248)
164 TIGR03143 AhpF_homolog putativ 97.9 0.0001 2.3E-09 60.2 9.3 78 28-129 476-554 (555)
165 TIGR02190 GlrX-dom Glutaredoxi 97.9 2.3E-05 4.9E-10 47.9 4.0 57 31-109 10-66 (79)
166 TIGR02189 GlrX-like_plant Glut 97.9 9.3E-06 2E-10 52.0 2.1 63 31-111 10-72 (99)
167 TIGR02181 GRX_bact Glutaredoxi 97.8 5.9E-06 1.3E-10 50.2 1.1 52 45-109 7-58 (79)
168 KOG3414 Component of the U4/U6 97.8 0.0002 4.4E-09 47.5 8.2 81 11-110 9-89 (142)
169 KOG3171 Conserved phosducin-li 97.8 6.6E-05 1.4E-09 54.2 6.4 87 26-131 158-249 (273)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 9.4E-05 2E-09 52.6 6.7 86 26-129 76-197 (197)
171 TIGR02194 GlrX_NrdH Glutaredox 97.8 2.8E-05 6E-10 46.6 3.0 48 45-104 7-54 (72)
172 PRK10877 protein disulfide iso 97.7 0.00014 3.1E-09 53.3 6.8 89 26-131 106-229 (232)
173 PRK15317 alkyl hydroperoxide r 97.6 0.00042 9.2E-09 56.1 8.9 62 28-109 116-178 (517)
174 TIGR00365 monothiol glutaredox 97.6 4.3E-05 9.3E-10 48.7 2.4 53 44-109 24-76 (97)
175 PF07449 HyaE: Hydrogenase-1 e 97.6 0.00016 3.6E-09 46.9 5.1 87 10-118 16-102 (107)
176 cd03028 GRX_PICOT_like Glutare 97.6 0.00013 2.9E-09 45.6 4.2 54 43-109 19-72 (90)
177 cd03418 GRX_GRXb_1_3_like Glut 97.5 0.00013 2.7E-09 43.6 3.7 52 45-109 8-60 (75)
178 cd02972 DsbA_family DsbA famil 97.5 0.00017 3.8E-09 44.3 4.2 62 45-106 7-91 (98)
179 PF11009 DUF2847: Protein of u 97.5 0.00043 9.4E-09 44.7 5.9 92 12-118 6-98 (105)
180 PF02966 DIM1: Mitosis protein 97.5 0.0017 3.7E-08 43.5 8.8 68 25-110 18-86 (133)
181 PRK10638 glutaredoxin 3; Provi 97.4 0.0001 2.2E-09 45.3 2.3 54 45-111 10-63 (83)
182 cd03027 GRX_DEP Glutaredoxin ( 97.4 0.00028 6.1E-09 42.2 4.0 53 45-110 9-61 (73)
183 COG0695 GrxC Glutaredoxin and 97.4 0.00027 5.9E-09 43.4 3.5 48 45-104 9-59 (80)
184 PF05768 DUF836: Glutaredoxin- 97.3 0.00015 3.2E-09 44.5 2.3 74 45-130 8-81 (81)
185 cd03072 PDI_b'_ERp44 PDIb' fam 97.3 0.0015 3.2E-08 42.6 7.0 86 26-131 15-106 (111)
186 PRK10824 glutaredoxin-4; Provi 97.3 0.0003 6.5E-09 46.3 3.2 54 45-111 28-81 (115)
187 TIGR03140 AhpF alkyl hydropero 97.2 0.0025 5.5E-08 51.7 9.0 57 30-104 120-176 (515)
188 cd03023 DsbA_Com1_like DsbA fa 97.2 0.0011 2.4E-08 44.4 5.8 41 26-75 4-44 (154)
189 PRK11657 dsbG disulfide isomer 97.2 0.0017 3.8E-08 48.1 6.8 39 90-130 211-249 (251)
190 cd02983 P5_C P5 family, C-term 97.1 0.0013 2.9E-08 44.0 5.4 70 51-131 40-113 (130)
191 KOG1752 Glutaredoxin and relat 97.1 0.00096 2.1E-08 43.1 4.0 61 31-109 16-76 (104)
192 cd03073 PDI_b'_ERp72_ERp57 PDI 97.0 0.0032 6.9E-08 41.0 6.4 71 50-131 33-109 (111)
193 PTZ00062 glutaredoxin; Provisi 97.0 0.00046 1E-08 49.8 2.4 68 26-110 111-178 (204)
194 KOG3170 Conserved phosducin-li 96.9 0.012 2.5E-07 42.4 8.6 85 24-129 108-197 (240)
195 PRK12759 bifunctional gluaredo 96.8 0.0026 5.7E-08 50.4 5.4 57 45-109 10-69 (410)
196 cd02981 PDI_b_family Protein D 96.8 0.012 2.7E-07 36.5 7.2 80 26-131 16-96 (97)
197 PF00837 T4_deiodinase: Iodoth 96.7 0.011 2.4E-07 43.5 7.3 97 25-131 100-235 (237)
198 PF13462 Thioredoxin_4: Thiore 96.6 0.0065 1.4E-07 41.2 5.5 43 26-76 11-55 (162)
199 PF01216 Calsequestrin: Calseq 96.6 0.011 2.4E-07 45.7 7.1 90 5-117 36-130 (383)
200 cd03019 DsbA_DsbA DsbA family, 96.5 0.0056 1.2E-07 42.2 4.7 42 26-75 14-55 (178)
201 PF07912 ERp29_N: ERp29, N-ter 96.4 0.029 6.3E-07 37.2 7.3 104 8-132 9-118 (126)
202 TIGR03143 AhpF_homolog putativ 96.2 0.033 7.1E-07 45.7 8.3 74 26-117 365-440 (555)
203 PRK10954 periplasmic protein d 96.1 0.01 2.2E-07 42.6 4.3 42 26-75 36-80 (207)
204 cd03031 GRX_GRX_like Glutaredo 96.0 0.0053 1.2E-07 42.1 2.3 28 46-79 15-42 (147)
205 COG1225 Bcp Peroxiredoxin [Pos 96.0 0.058 1.3E-06 37.3 7.4 47 26-79 29-76 (157)
206 KOG2603 Oligosaccharyltransfer 95.8 0.041 9E-07 42.0 6.7 86 5-107 42-135 (331)
207 COG1331 Highly conserved prote 95.6 0.014 3E-07 48.7 3.7 69 25-110 41-121 (667)
208 cd03013 PRX5_like Peroxiredoxi 95.5 0.012 2.6E-07 40.4 2.6 84 26-116 28-139 (155)
209 PHA03075 glutaredoxin-like pro 94.6 0.095 2.1E-06 34.4 4.7 36 28-75 2-37 (123)
210 COG4545 Glutaredoxin-related p 94.5 0.066 1.4E-06 32.5 3.4 64 32-110 5-75 (85)
211 PF13848 Thioredoxin_6: Thiore 94.5 0.091 2E-06 36.1 4.8 65 53-131 8-73 (184)
212 PF06053 DUF929: Domain of unk 94.2 0.24 5.2E-06 36.8 6.6 35 25-68 56-90 (249)
213 cd02977 ArsC_family Arsenate R 94.1 0.08 1.7E-06 33.7 3.6 28 45-78 7-34 (105)
214 cd03036 ArsC_like Arsenate Red 94.0 0.026 5.6E-07 36.6 1.1 29 45-79 7-35 (111)
215 cd03067 PDI_b_PDIR_N PDIb fami 93.0 0.71 1.5E-05 29.8 6.4 81 9-109 5-90 (112)
216 COG0278 Glutaredoxin-related p 92.5 0.37 8E-06 30.9 4.6 89 26-131 13-103 (105)
217 PRK01655 spxA transcriptional 92.1 0.28 6E-06 32.8 3.9 27 45-77 8-34 (131)
218 cd03035 ArsC_Yffb Arsenate Red 91.7 0.32 6.9E-06 31.2 3.7 28 45-78 7-34 (105)
219 cd03069 PDI_b_ERp57 PDIb famil 91.0 1.9 4.2E-05 27.3 6.9 91 10-131 5-102 (104)
220 cd02978 KaiB_like KaiB-like fa 90.8 1.4 3.1E-05 26.5 5.6 61 30-107 3-64 (72)
221 TIGR01617 arsC_related transcr 90.7 0.43 9.2E-06 31.1 3.7 28 45-78 7-34 (117)
222 cd03032 ArsC_Spx Arsenate Redu 90.4 0.64 1.4E-05 30.1 4.3 27 45-77 8-34 (115)
223 COG1999 Uncharacterized protei 89.7 0.82 1.8E-05 33.0 4.8 45 26-78 66-115 (207)
224 PRK12559 transcriptional regul 89.7 0.79 1.7E-05 30.6 4.4 27 45-77 8-34 (131)
225 PRK09301 circadian clock prote 89.6 1.9 4.1E-05 27.7 5.8 73 28-118 6-79 (103)
226 PF13743 Thioredoxin_5: Thiore 89.1 0.91 2E-05 31.8 4.5 31 45-75 6-36 (176)
227 cd03041 GST_N_2GST_N GST_N fam 88.5 0.81 1.7E-05 27.2 3.5 16 45-60 8-23 (77)
228 cd03025 DsbA_FrnE_like DsbA fa 88.3 0.94 2E-05 31.4 4.2 30 32-68 3-32 (193)
229 PF02630 SCO1-SenC: SCO1/SenC; 87.8 1.1 2.3E-05 31.3 4.1 45 26-78 51-99 (174)
230 PRK13344 spxA transcriptional 87.6 1.5 3.2E-05 29.4 4.6 27 45-77 8-34 (132)
231 TIGR02654 circ_KaiB circadian 87.2 3.5 7.5E-05 25.7 5.7 63 46-118 13-76 (87)
232 PF13462 Thioredoxin_4: Thiore 87.0 0.41 8.8E-06 32.2 1.7 34 90-130 128-161 (162)
233 cd03051 GST_N_GTT2_like GST_N 86.8 1.1 2.5E-05 25.7 3.4 51 45-104 7-57 (74)
234 PF01323 DSBA: DSBA-like thior 86.7 0.54 1.2E-05 32.6 2.2 27 45-72 8-34 (193)
235 COG2761 FrnE Predicted dithiol 86.1 0.74 1.6E-05 33.7 2.7 33 27-66 3-35 (225)
236 cd03060 GST_N_Omega_like GST_N 86.1 1.8 3.9E-05 25.1 4.0 52 45-109 7-58 (71)
237 cd00570 GST_N_family Glutathio 84.9 2.6 5.5E-05 23.3 4.2 49 45-104 7-55 (71)
238 cd03066 PDI_b_Calsequestrin_mi 80.0 12 0.00026 23.4 6.8 81 26-131 18-99 (102)
239 COG3531 Predicted protein-disu 79.8 1.3 2.8E-05 31.9 1.8 23 88-110 164-186 (212)
240 cd03019 DsbA_DsbA DsbA family, 79.8 2 4.2E-05 29.3 2.7 19 90-110 135-153 (178)
241 cd03061 GST_N_CLIC GST_N famil 78.4 13 0.00029 23.2 6.0 32 44-79 19-50 (91)
242 PRK10954 periplasmic protein d 77.9 2.2 4.8E-05 30.5 2.6 19 90-110 159-177 (207)
243 PF04592 SelP_N: Selenoprotein 76.6 4.1 9E-05 30.1 3.6 43 25-75 24-70 (238)
244 PF09673 TrbC_Ftype: Type-F co 76.1 6.9 0.00015 25.4 4.3 18 90-107 63-80 (113)
245 cd03025 DsbA_FrnE_like DsbA fa 75.7 2.5 5.5E-05 29.2 2.3 20 90-109 161-180 (193)
246 KOG2640 Thioredoxin [Function 75.7 1.2 2.7E-05 34.1 0.8 65 26-107 75-139 (319)
247 PF07689 KaiB: KaiB domain; I 75.6 1.8 4E-05 26.6 1.4 62 46-117 7-69 (82)
248 cd03022 DsbA_HCCA_Iso DsbA fam 74.7 2.7 5.8E-05 29.1 2.2 24 91-119 160-183 (192)
249 COG1651 DsbG Protein-disulfide 74.5 7.8 0.00017 28.0 4.8 38 28-74 85-122 (244)
250 cd03033 ArsC_15kD Arsenate Red 74.5 4.3 9.3E-05 26.4 3.0 26 45-76 8-33 (113)
251 cd03059 GST_N_SspA GST_N famil 74.1 8.1 0.00018 22.0 4.0 16 45-60 7-22 (73)
252 PF13743 Thioredoxin_5: Thiore 73.8 0.93 2E-05 31.7 -0.3 18 89-106 138-155 (176)
253 cd03045 GST_N_Delta_Epsilon GS 73.4 5.9 0.00013 22.8 3.2 50 45-103 7-56 (74)
254 cd03068 PDI_b_ERp72 PDIb famil 72.4 22 0.00048 22.6 8.1 95 10-132 5-107 (107)
255 PRK15317 alkyl hydroperoxide r 70.9 41 0.00088 27.4 8.5 51 46-117 29-80 (517)
256 cd03021 DsbA_GSTK DsbA family, 70.1 3.2 7E-05 29.5 1.8 37 91-129 172-208 (209)
257 TIGR03140 AhpF alkyl hydropero 69.8 35 0.00076 27.8 7.9 52 46-117 29-81 (515)
258 COG5429 Uncharacterized secret 68.7 8.2 0.00018 28.7 3.6 73 29-110 42-123 (261)
259 PF06764 DUF1223: Protein of u 67.7 24 0.00052 25.4 5.9 61 46-110 9-80 (202)
260 PF01323 DSBA: DSBA-like thior 67.2 17 0.00037 24.9 5.0 33 91-129 160-192 (193)
261 COG2761 FrnE Predicted dithiol 66.3 15 0.00033 27.0 4.7 37 90-130 176-214 (225)
262 COG0821 gcpE 1-hydroxy-2-methy 65.6 17 0.00036 28.5 4.9 64 47-118 264-338 (361)
263 cd03040 GST_N_mPGES2 GST_N fam 65.3 9.3 0.0002 22.2 2.9 16 45-60 8-23 (77)
264 cd02974 AhpF_NTD_N Alkyl hydro 65.2 31 0.00068 21.6 9.0 49 48-117 31-80 (94)
265 PF08806 Sep15_SelM: Sep15/Sel 65.0 6.8 0.00015 23.8 2.3 33 98-131 41-74 (78)
266 cd03034 ArsC_ArsC Arsenate Red 63.5 13 0.00029 23.8 3.6 27 45-77 7-33 (112)
267 TIGR02742 TrbC_Ftype type-F co 63.4 4.4 9.5E-05 27.2 1.3 20 90-109 63-82 (130)
268 TIGR00014 arsC arsenate reduct 63.4 13 0.00029 23.9 3.6 27 45-77 7-33 (114)
269 KOG2507 Ubiquitin regulatory p 62.9 67 0.0014 26.1 7.9 77 26-117 17-97 (506)
270 PF13417 GST_N_3: Glutathione 62.3 28 0.00062 20.1 5.8 51 45-109 5-55 (75)
271 KOG1364 Predicted ubiquitin re 61.9 17 0.00038 28.4 4.4 59 66-131 129-191 (356)
272 cd03037 GST_N_GRX2 GST_N famil 61.9 8.2 0.00018 22.1 2.2 16 45-60 7-22 (71)
273 PF00255 GSHPx: Glutathione pe 59.7 29 0.00064 22.4 4.7 56 5-78 8-64 (108)
274 cd03055 GST_N_Omega GST_N fami 58.7 31 0.00067 20.8 4.5 47 46-104 26-72 (89)
275 cd03074 PDI_b'_Calsequestrin_C 57.8 51 0.0011 21.6 7.9 78 45-131 30-118 (120)
276 cd03022 DsbA_HCCA_Iso DsbA fam 55.7 24 0.00051 24.2 4.0 35 32-73 1-35 (192)
277 PF11287 DUF3088: Protein of u 55.1 10 0.00023 24.7 1.9 77 46-131 23-105 (112)
278 KOG0911 Glutaredoxin-related p 54.9 26 0.00057 25.7 4.2 44 26-79 137-180 (227)
279 COG4604 CeuD ABC-type enteroch 54.3 41 0.00088 24.8 5.0 66 47-129 168-233 (252)
280 PF06279 DUF1033: Protein of u 54.2 7.9 0.00017 25.6 1.3 31 26-60 56-86 (120)
281 COG1393 ArsC Arsenate reductas 53.4 20 0.00043 23.5 3.1 22 32-60 3-24 (117)
282 KOG0855 Alkyl hydroperoxide re 52.3 49 0.0011 23.5 5.0 46 26-78 89-135 (211)
283 COG3581 Uncharacterized protei 51.6 52 0.0011 26.4 5.6 32 46-77 80-114 (420)
284 PF10589 NADH_4Fe-4S: NADH-ubi 51.6 7.2 0.00016 21.1 0.7 19 46-64 18-36 (46)
285 cd03054 GST_N_Metaxin GST_N fa 50.7 15 0.00032 21.1 2.0 16 45-60 14-29 (72)
286 PRK10853 putative reductase; P 49.3 22 0.00047 23.2 2.8 26 45-76 8-33 (118)
287 TIGR02652 conserved hypothetic 49.0 6.6 0.00014 26.8 0.3 14 46-59 11-24 (163)
288 PF09654 DUF2396: Protein of u 48.9 6.4 0.00014 26.8 0.2 14 46-59 8-21 (161)
289 KOG4277 Uncharacterized conser 45.8 99 0.0021 24.2 6.2 92 25-131 248-349 (468)
290 cd03024 DsbA_FrnE DsbA family, 44.3 45 0.00097 23.0 4.0 27 32-65 1-27 (201)
291 PRK10026 arsenate reductase; P 43.9 31 0.00068 23.4 3.0 25 45-75 10-34 (141)
292 KOG2792 Putative cytochrome C 43.9 41 0.00089 25.4 3.8 43 26-76 138-187 (280)
293 TIGR01616 nitro_assoc nitrogen 43.5 33 0.00071 22.7 3.0 16 45-60 9-24 (126)
294 COG0450 AhpC Peroxiredoxin [Po 41.8 24 0.00051 25.4 2.2 46 26-78 32-78 (194)
295 PF06491 Disulph_isomer: Disul 41.8 60 0.0013 21.9 4.0 65 46-117 45-114 (136)
296 PF03960 ArsC: ArsC family; I 41.3 41 0.0009 21.3 3.2 28 45-78 4-31 (110)
297 COG0386 BtuE Glutathione perox 40.4 89 0.0019 21.8 4.8 42 26-76 24-66 (162)
298 TIGR03439 methyl_EasF probable 40.1 1.6E+02 0.0035 22.7 6.7 38 28-77 77-114 (319)
299 PRK00366 ispG 4-hydroxy-3-meth 39.9 56 0.0012 25.8 4.2 27 92-118 317-344 (360)
300 cd00062 FN2 Fibronectin Type I 39.3 15 0.00033 20.2 0.7 11 39-49 25-35 (48)
301 PF00040 fn2: Fibronectin type 39.1 7.2 0.00016 20.7 -0.6 11 39-49 19-29 (42)
302 cd03052 GST_N_GDAP1 GST_N fami 39.1 65 0.0014 18.6 3.6 53 46-109 8-60 (73)
303 COG3634 AhpF Alkyl hydroperoxi 38.9 2E+02 0.0043 23.3 7.0 61 26-104 115-175 (520)
304 PF04472 DUF552: Protein of un 36.6 21 0.00045 21.1 1.1 29 7-36 3-31 (73)
305 PF14437 MafB19-deam: MafB19-l 36.3 44 0.00095 22.9 2.8 26 45-73 109-135 (146)
306 COG4699 Uncharacterized protei 35.6 5.2 0.00011 26.1 -1.7 32 26-61 56-87 (120)
307 COG0266 Nei Formamidopyrimidin 34.9 10 0.00022 28.7 -0.5 10 43-52 264-273 (273)
308 PF14424 Toxin-deaminase: The 33.5 76 0.0016 21.2 3.6 23 45-71 106-128 (133)
309 PF14401 RLAN: RimK-like ATPgr 32.1 1.7E+02 0.0036 20.0 6.0 56 12-79 68-124 (153)
310 smart00059 FN2 Fibronectin typ 32.0 23 0.00051 19.5 0.7 11 39-49 26-36 (49)
311 COG4187 RocB Arginine degradat 31.4 50 0.0011 27.1 2.7 28 15-49 398-425 (553)
312 KOG2244 Highly conserved prote 31.3 29 0.00063 29.2 1.4 71 25-107 110-186 (786)
313 PRK09481 sspA stringent starva 30.3 73 0.0016 22.4 3.3 28 45-76 17-44 (211)
314 PF07895 DUF1673: Protein of u 29.9 15 0.00032 26.5 -0.3 10 46-55 13-22 (205)
315 TIGR00612 ispG_gcpE 1-hydroxy- 29.9 63 0.0014 25.4 3.0 26 92-117 308-335 (346)
316 KOG0333 U5 snRNP-like RNA heli 28.7 1.3E+02 0.0029 25.3 4.8 33 29-76 453-485 (673)
317 cd03056 GST_N_4 GST_N family, 28.5 58 0.0012 18.2 2.1 27 45-75 7-33 (73)
318 PRK13730 conjugal transfer pil 27.9 28 0.0006 25.3 0.7 25 92-117 156-180 (212)
319 PRK14811 formamidopyrimidine-D 27.9 12 0.00026 28.0 -1.1 13 43-55 254-266 (269)
320 cd03030 GRX_SH3BGR Glutaredoxi 27.1 1.6E+02 0.0035 18.2 4.5 28 50-79 15-42 (92)
321 PF04134 DUF393: Protein of un 26.9 86 0.0019 19.6 2.9 26 46-73 6-31 (114)
322 COG1148 HdrA Heterodisulfide r 26.5 1.9E+02 0.0042 24.3 5.3 54 26-79 358-414 (622)
323 smart00293 PWWP domain with co 26.2 44 0.00096 19.0 1.3 22 26-51 37-58 (63)
324 PF11238 DUF3039: Protein of u 26.0 45 0.00097 19.1 1.2 35 20-55 17-55 (58)
325 cd03038 GST_N_etherase_LigE GS 25.8 53 0.0012 19.3 1.7 29 44-76 13-41 (84)
326 PF08874 DUF1835: Domain of un 24.6 2E+02 0.0043 18.4 5.5 28 46-75 95-122 (124)
327 KOG1651 Glutathione peroxidase 24.1 1.5E+02 0.0034 20.8 3.8 39 26-72 33-72 (171)
328 PRK13683 hypothetical protein; 23.8 1E+02 0.0022 19.2 2.6 27 11-37 23-49 (87)
329 PF04551 GcpE: GcpE protein; 23.2 30 0.00065 27.3 0.2 63 47-117 271-344 (359)
330 PF10050 DUF2284: Predicted me 23.0 1.1E+02 0.0024 21.0 3.0 33 43-76 28-61 (166)
331 PF14307 Glyco_tran_WbsX: Glyc 22.9 2.1E+02 0.0046 22.1 4.9 42 26-75 157-199 (345)
332 PRK01103 formamidopyrimidine/5 22.7 20 0.00044 26.8 -0.8 9 44-52 265-273 (274)
333 PF14639 YqgF: Holliday-juncti 22.2 1.8E+02 0.0038 19.8 3.9 45 18-74 56-105 (150)
334 cd02990 UAS_FAF1 UAS family, F 22.1 2.6E+02 0.0056 18.8 8.8 86 25-117 19-119 (136)
335 cd03021 DsbA_GSTK DsbA family, 22.0 2.3E+02 0.0051 19.9 4.7 37 32-75 3-39 (209)
336 PF06527 TniQ: TniQ; InterPro 21.7 40 0.00088 21.6 0.6 10 42-51 94-103 (136)
337 PF15379 DUF4606: Domain of un 21.4 89 0.0019 20.1 2.1 15 45-59 32-46 (104)
338 KOG3975 Uncharacterized conser 21.2 1.6E+02 0.0036 22.4 3.7 30 26-65 240-269 (301)
339 PRK14810 formamidopyrimidine-D 21.0 25 0.00054 26.4 -0.6 7 45-51 265-271 (272)
340 PTZ00304 NADH dehydrogenase [u 20.6 71 0.0015 26.1 1.9 19 46-64 369-387 (461)
341 TIGR01689 EcbF-BcbF capsule bi 20.6 40 0.00086 22.3 0.4 7 43-49 86-92 (126)
342 PF03227 GILT: Gamma interfero 20.4 2.4E+02 0.0052 17.8 4.8 14 46-59 10-24 (108)
343 PRK13945 formamidopyrimidine-D 20.4 25 0.00055 26.5 -0.7 7 45-51 275-281 (282)
344 cd03049 GST_N_3 GST_N family, 20.4 1.8E+02 0.0038 16.3 3.7 15 45-59 7-21 (73)
345 PF11290 DUF3090: Protein of u 20.2 40 0.00086 23.8 0.3 9 43-51 153-161 (171)
346 PF09547 Spore_IV_A: Stage IV 20.2 77 0.0017 26.0 1.9 41 91-131 386-431 (492)
No 1
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.97 E-value=9.2e-31 Score=172.53 Aligned_cols=119 Identities=39% Similarity=0.791 Sum_probs=92.1
Q ss_pred cccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 9 TVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
++++|+++.+.+.+...++++++|.|+|++| .+|+||||+|++..|.++++++..+++..++.|.++++++|++|+|+|
T Consensus 1 ~v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d-~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 1 NVRGYDEFEKLVEEYENSGKPLFLLFTGSKD-ETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp -EECHHHHHHHHHC--TTTSEEEEEEE--B--TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHH
T ss_pred CccCHHHHHHHHHHhhcCCCeEEEEEEccCC-CCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCc
Confidence 4679999977555555678999999999999 999999999999999999999988778999999999999999999999
Q ss_pred cccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 89 RVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
|..++++|++|||++.|+++ .|+.+.++..+++|+.|+++
T Consensus 80 R~~p~~~l~~IPTLi~~~~~---~rL~e~e~~~~~lv~~~~e~ 119 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETG---ERLVEEECLNEDLVEMFFED 119 (119)
T ss_dssp HH--CC---SSSEEEECTSS----EEEHHHHH-HHHHHHHHH-
T ss_pred eEcceeeeeecceEEEECCC---CccchhhhccHHHHHHHhcC
Confidence 98889999999999999988 78999999999999999874
No 2
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.95 E-value=2.9e-27 Score=156.42 Aligned_cols=117 Identities=44% Similarity=0.882 Sum_probs=101.9
Q ss_pred ccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCC
Q 032841 6 SDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQ 85 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 85 (132)
+..++++++++.+.+.. .++++++|.|||+.|+ ||++|||+|+.+.|.++++++++++++.|+.||+++.++|++++
T Consensus 2 ~~~~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~-~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~ 78 (119)
T cd02952 2 LETAVRGYEEFLKLLKS--HEGKPIFILFYGDKDP-DGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPN 78 (119)
T ss_pred ccccccCHHHHHHHHHh--cCCCeEEEEEEccCCC-CCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcc
Confidence 34667788888654443 2578999999999998 99999999999999999999999877999999999999999887
Q ss_pred CCcccccccccc-ccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 86 HPFRVNSRFKLT-GVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 86 ~~~~~~~~~~v~-~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++++ ..++|+ ++||+++|++| +++.+.++.+++.+.+|++
T Consensus 79 ~~~~--~~~~I~~~iPT~~~~~~~---~~l~~~~c~~~~~~~~~~~ 119 (119)
T cd02952 79 NPFR--TDPKLTTGVPTLLRWKTP---QRLVEDECLQADLVEMFFE 119 (119)
T ss_pred hhhH--hccCcccCCCEEEEEcCC---ceecchhhcCHHHHHHhhC
Confidence 7776 589998 99999999877 6899999999999999973
No 3
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.9e-27 Score=152.74 Aligned_cols=118 Identities=39% Similarity=0.845 Sum_probs=102.5
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
..+|+++.+ +++...+++.++|.|+|++|+.+|+||||+|++.+|.+.+.+++.+.++.|+.|++++.++|++|+++||
T Consensus 9 ~~g~e~~~~-~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR 87 (128)
T KOG3425|consen 9 LPGYESFEE-TLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR 87 (128)
T ss_pred cchHHHHHH-HHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc
Confidence 457788744 5555557778999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
....+ +.+|||++.|+++ ..|+.+.......+++.|++.
T Consensus 88 ~d~~~-lt~vPTLlrw~~~--~~rL~~~q~~~~~Lve~~Fse 126 (128)
T KOG3425|consen 88 KDPGI-LTAVPTLLRWKRQ--PQRLDGLQCLNDHLVEMLFSE 126 (128)
T ss_pred cCCCc-eeecceeeEEcCc--cccchHhHhhHHHHHHHhccc
Confidence 75555 6999999999852 368889888888888888775
No 4
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.7e-24 Score=143.07 Aligned_cols=103 Identities=20% Similarity=0.398 Sum_probs=87.7
Q ss_pred ccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCC
Q 032841 8 ATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHP 87 (132)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 87 (132)
..+.+.+++.+.+++ ++.||+|+|||+ ||+||+.+.|.++++..++.+.+.|++||+|+.. +
T Consensus 45 ~~~~s~~~~~~~Vi~---S~~PVlVdF~A~--------WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~---e---- 106 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVIN---SDVPVLVDFHAE--------WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP---E---- 106 (150)
T ss_pred ccccCHHHHHHHHHc---cCCCEEEEEecC--------cCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc---c----
Confidence 345566677555664 899999999998 9999999999999999999889999999999977 3
Q ss_pred ccccccccccccceEEEEeCCeEeEEecCc--chhcHHHHHHhhh
Q 032841 88 FRVNSRFKLTGVPTLFRWENDIVSGRLEDH--EAHLEHKIKALLS 130 (132)
Q Consensus 88 ~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~--~~~~~~~l~~~l~ 130 (132)
++.+|+|+.+||+++|++|+...++.|. .....+.|++|+.
T Consensus 107 --la~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 107 --LAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred --hHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 8889999999999999999999999997 3355666666654
No 5
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=132.19 Aligned_cols=84 Identities=20% Similarity=0.419 Sum_probs=74.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+|||+ |||||+.+.|.+.+++.+|++ +.|++||+++ +.+ ++.+++|+++|||++|
T Consensus 20 ~~kliVvdF~a~--------wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~------~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 20 GDKLVVVDFYAT--------WCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEE------VAKEFNVKAMPTFVFY 81 (106)
T ss_pred CCCeEEEEEECC--------CCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHh------HHHhcCceEeeEEEEE
Confidence 579999999998 999999999999999999996 9999999988 445 8889999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhh
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++|+.+++++|.... .+++.++
T Consensus 82 k~g~~~~~~vGa~~~---~l~~~i~ 103 (106)
T KOG0907|consen 82 KGGEEVDEVVGANKA---ELEKKIA 103 (106)
T ss_pred ECCEEEEEEecCCHH---HHHHHHH
Confidence 999999999998543 5555554
No 6
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.88 E-value=3.1e-22 Score=131.26 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
++++++|+|||+ |||||+.+.|.++++++++++.+.|++||+++.+ + ++.+|+|+++||+++|
T Consensus 13 ~~~~vVV~F~A~--------WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~------la~~~~V~~iPTf~~f 75 (114)
T cd02954 13 EEKVVVIRFGRD--------WDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---D------FNKMYELYDPPTVMFF 75 (114)
T ss_pred CCCEEEEEEECC--------CChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---H------HHHHcCCCCCCEEEEE
Confidence 578999999998 9999999999999999999877899999999876 3 7889999999999999
Q ss_pred eCCeEeEEecCc
Q 032841 106 ENDIVSGRLEDH 117 (132)
Q Consensus 106 ~~g~~~~~~~~~ 117 (132)
++|+.+++..|.
T Consensus 76 k~G~~v~~~~G~ 87 (114)
T cd02954 76 FRNKHMKIDLGT 87 (114)
T ss_pred ECCEEEEEEcCC
Confidence 999999999885
No 7
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=1.5e-21 Score=126.39 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
++++++|+|||+ ||+||+.+.|.++++.+++...+.|+.+|++....+ .-.++.+|+|+++||+++|
T Consensus 13 ~~~~vvV~F~A~--------WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d-----~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 13 QKKDVIVMITQD--------NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD-----REKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCCcEEEEEECC--------CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc-----cHHHHHHCCCccccEEEEE
Confidence 789999999997 999999999999999887554578999999875310 0016789999999999999
Q ss_pred eCCeEeEEecCc
Q 032841 106 ENDIVSGRLEDH 117 (132)
Q Consensus 106 ~~g~~~~~~~~~ 117 (132)
++|+.++++.|.
T Consensus 80 k~G~~v~~~~G~ 91 (103)
T PHA02278 80 KDGQLVKKYEDQ 91 (103)
T ss_pred ECCEEEEEEeCC
Confidence 999999999995
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=3.6e-21 Score=124.35 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+|||+ ||++|+.+.|.++++++++ +++.|+.||+++...+.+ ++.+|+|+++||+++|
T Consensus 14 ~~k~vvv~F~a~--------wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~------l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 14 KGRLVVLEFALK--------HSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTME------LCRREKIIEVPHFLFY 78 (103)
T ss_pred CCCEEEEEEECC--------CCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHH------HHHHcCCCcCCEEEEE
Confidence 589999999998 9999999999999999998 579999999887542223 6789999999999999
Q ss_pred eCCeEeEEecCcc
Q 032841 106 ENDIVSGRLEDHE 118 (132)
Q Consensus 106 ~~g~~~~~~~~~~ 118 (132)
++|+.+.++.|..
T Consensus 79 ~~G~~v~~~~G~~ 91 (103)
T cd02985 79 KDGEKIHEEEGIG 91 (103)
T ss_pred eCCeEEEEEeCCC
Confidence 9999999999964
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=8.3e-21 Score=122.26 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=81.2
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 84 (132)
++.++..+|++.+. +++++++|.|||+ ||++|+.+.|.++++++++.+.+.|+.||++... +
T Consensus 3 v~~l~~~~f~~~i~------~~~~~v~v~f~a~--------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~- 64 (104)
T cd03004 3 VITLTPEDFPELVL------NRKEPWLVDFYAP--------WCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---S- 64 (104)
T ss_pred ceEcCHHHHHHHHh------cCCCeEEEEEECC--------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---H-
Confidence 34455556666532 3677999999998 9999999999999999998778999999998765 3
Q ss_pred CCCccccccccccccceEEEEeCC-eEeEEecCcchhcHHHHHHhh
Q 032841 85 QHPFRVNSRFKLTGVPTLFRWEND-IVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 85 ~~~~~~~~~~~v~~vPt~~~~~~g-~~~~~~~~~~~~~~~~l~~~l 129 (132)
++.+|+|+++||+++|++| +...++.|... +.+.|.+||
T Consensus 65 -----~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~-~~~~l~~~i 104 (104)
T cd03004 65 -----LCQQANIRAYPTIRLYPGNASKYHSYNGWHR-DADSILEFI 104 (104)
T ss_pred -----HHHHcCCCcccEEEEEcCCCCCceEccCCCC-CHHHHHhhC
Confidence 7788999999999999987 77888888643 356677775
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=1.3e-20 Score=123.76 Aligned_cols=102 Identities=7% Similarity=0.076 Sum_probs=82.0
Q ss_pred ccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccC
Q 032841 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRN 83 (132)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 83 (132)
++++++..+|++... ++ .++++++|.|||+ ||++|+.+.|.++++++++.+.+.|+.||++... +
T Consensus 10 ~v~~l~~~~f~~~~~-v~---~~~~~vlV~FyA~--------WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~ 74 (113)
T cd03006 10 PVLDFYKGQLDYAEE-LR---TDAEVSLVMYYAP--------WDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---G 74 (113)
T ss_pred CeEEechhhhHHHHh-cc---cCCCEEEEEEECC--------CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---H
Confidence 466777788888632 22 3789999999997 9999999999999999999877999999998765 2
Q ss_pred CCCCcccc-ccccccccceEEEEeCCeEeEEecCcchhcHHHHHHh
Q 032841 84 PQHPFRVN-SRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKAL 128 (132)
Q Consensus 84 ~~~~~~~~-~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~ 128 (132)
++ ++|+|+++||+++|++|+...++.|.. ..+.|..|
T Consensus 75 ------l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~--~~~~i~~~ 112 (113)
T cd03006 75 ------KCRKQKHFFYFPVIHLYYRSRGPIEYKGPM--RAPYMEKF 112 (113)
T ss_pred ------HHHHhcCCcccCEEEEEECCccceEEeCCC--CHHHHHhh
Confidence 66 589999999999999998877777753 23345444
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=9.1e-21 Score=121.62 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=79.7
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 84 (132)
++.++..+|++.+. ++++++|+|||+ ||++|+.+.|.+.++++++++.+.|+.||+++.+ +
T Consensus 3 ~~~l~~~~f~~~v~-------~~~~~~v~f~a~--------wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~- 63 (101)
T cd03003 3 IVTLDRGDFDAAVN-------SGEIWFVNFYSP--------RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---M- 63 (101)
T ss_pred eEEcCHhhHHHHhc-------CCCeEEEEEECC--------CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---H-
Confidence 34556667776532 568999999997 9999999999999999999877999999998765 3
Q ss_pred CCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHh
Q 032841 85 QHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKAL 128 (132)
Q Consensus 85 ~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~ 128 (132)
++.+++|+++||+++|++|+...++.|. ...+.|..|
T Consensus 64 -----~~~~~~v~~~Pt~~~~~~g~~~~~~~G~--~~~~~l~~f 100 (101)
T cd03003 64 -----LCRSQGVNSYPSLYVFPSGMNPEKYYGD--RSKESLVKF 100 (101)
T ss_pred -----HHHHcCCCccCEEEEEcCCCCcccCCCC--CCHHHHHhh
Confidence 7789999999999999999877777774 334456555
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=2.5e-20 Score=118.89 Aligned_cols=100 Identities=17% Similarity=0.410 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCC
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQH 86 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 86 (132)
.++..+|++.+. +++++++|+||++ ||++|+.+.|.+.++++++++++.|+.||++... .
T Consensus 3 ~lt~~~f~~~i~------~~~~~vvv~f~~~--------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~--- 62 (103)
T PF00085_consen 3 VLTDENFEKFIN------ESDKPVVVYFYAP--------WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---E--- 62 (103)
T ss_dssp EESTTTHHHHHT------TTSSEEEEEEEST--------TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---H---
T ss_pred ECCHHHHHHHHH------ccCCCEEEEEeCC--------CCCccccccceecccccccccccccchhhhhccc---h---
Confidence 455667777643 2589999999997 9999999999999999999879999999998764 3
Q ss_pred CccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 87 PFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 87 ~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++.+|+|+++||++++++|+...++.|. ...+.|.+||++
T Consensus 63 ---l~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~l~~~i~~ 102 (103)
T PF00085_consen 63 ---LCKKYGVKSVPTIIFFKNGKEVKRYNGP--RNAESLIEFIEK 102 (103)
T ss_dssp ---HHHHTTCSSSSEEEEEETTEEEEEEESS--SSHHHHHHHHHH
T ss_pred ---hhhccCCCCCCEEEEEECCcEEEEEECC--CCHHHHHHHHHc
Confidence 7889999999999999999999988887 456788888874
No 13
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=3.5e-20 Score=119.44 Aligned_cols=84 Identities=12% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++++++|+|||+ ||++|+.+.|.+.++++++++ .+.|+.+|++. . + ++.+|+|+++||+++
T Consensus 16 ~~~~vvv~F~a~--------wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-~---~------~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 16 NKGLTVVDVYQE--------WCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-I---D------TLKRYRGKCEPTFLF 77 (102)
T ss_pred cCCeEEEEEECC--------cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-H---H------HHHHcCCCcCcEEEE
Confidence 788999999998 999999999999999998873 47899999883 2 2 678999999999999
Q ss_pred EeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 105 WENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
|++|+.+.++.|. ..+.+.++|+
T Consensus 78 ~~~g~~~~~~~G~---~~~~~~~~i~ 100 (102)
T cd02948 78 YKNGELVAVIRGA---NAPLLNKTIT 100 (102)
T ss_pred EECCEEEEEEecC---ChHHHHHHHh
Confidence 9999999999995 3456667665
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=2e-20 Score=123.96 Aligned_cols=100 Identities=9% Similarity=0.110 Sum_probs=80.9
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChh--HH--hhhHHHHHHHHhC--CCCcEEEEEEeCCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPD--CV--RAEPVIYKTLEAS--PDDIALLQAYVGDR 78 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~--C~--~~~p~~~~~~~~~--~~~~~~~~v~~~~~ 78 (132)
++.++..+|++.+. +++.+++++|||. ||++ |+ .+.|.+.++++++ .+++.|++||+++.
T Consensus 11 v~~lt~~nF~~~v~------~~~~~vvv~f~a~--------wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 11 VIDLNEKNYKQVLK------KYDVLCLLYHEPV--------ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred eeeCChhhHHHHHH------hCCceEEEEECCC--------cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 34556678887744 3667888888887 9988 99 9999999999887 67899999999987
Q ss_pred cCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 79 PTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
. + ++.+|+|+++||+++|++|+.+. +.|.. ..+.|.+||.
T Consensus 77 ~---~------La~~~~I~~iPTl~lfk~G~~v~-~~G~~--~~~~l~~~l~ 116 (120)
T cd03065 77 A---K------VAKKLGLDEEDSIYVFKDDEVIE-YDGEF--AADTLVEFLL 116 (120)
T ss_pred H---H------HHHHcCCccccEEEEEECCEEEE-eeCCC--CHHHHHHHHH
Confidence 6 3 88999999999999999999876 77763 3445666654
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.83 E-value=5.8e-20 Score=116.63 Aligned_cols=86 Identities=14% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+|||+ ||++|+++.|.++++.+.+.+.+.++.||++... . ++.+|+|+++||+++|
T Consensus 11 ~~~~vlv~f~a~--------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~------l~~~~~i~~~Pt~~~~ 73 (96)
T cd02956 11 TQVPVVVDFWAP--------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---Q------IAQQFGVQALPTVYLF 73 (96)
T ss_pred CCCeEEEEEECC--------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---H------HHHHcCCCCCCEEEEE
Confidence 478999999998 9999999999999999998777889999998765 3 7789999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhh
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++|+.+.++.|. ...+.|+.+|+
T Consensus 74 ~~g~~~~~~~g~--~~~~~l~~~l~ 96 (96)
T cd02956 74 AAGQPVDGFQGA--QPEEQLRQMLD 96 (96)
T ss_pred eCCEEeeeecCC--CCHHHHHHHhC
Confidence 999988888875 34567877764
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=5.6e-20 Score=118.31 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=71.2
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC-CCcCccCCCCCccccccccccccceEE
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG-DRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
.+|++++|.|||+ ||++|+.+.|.+++++++++ ++.++.||.+ ... + ++.+|+|+++||++
T Consensus 16 ~~g~~vlV~F~a~--------WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~---~------l~~~~~V~~~PT~~ 77 (100)
T cd02999 16 NREDYTAVLFYAS--------WCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKP---S------LLSRYGVVGFPTIL 77 (100)
T ss_pred cCCCEEEEEEECC--------CCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCH---H------HHHhcCCeecCEEE
Confidence 4789999999998 99999999999999999886 6888899876 333 2 77899999999999
Q ss_pred EEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 104 RWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+|++| .+.++.|. .+.+.|.+||
T Consensus 78 lf~~g-~~~~~~G~--~~~~~l~~f~ 100 (100)
T cd02999 78 LFNST-PRVRYNGT--RTLDSLAAFY 100 (100)
T ss_pred EEcCC-ceeEecCC--CCHHHHHhhC
Confidence 99999 77788886 4556777775
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=8.5e-20 Score=119.91 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=80.9
Q ss_pred cccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 9 TVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
++.+.+++.+ .+. ++++++|+||++ ||++|+.+.|.+++++++++ ++.|++||++... +
T Consensus 8 ~i~~~~~~~~-~i~---~~~~vvV~f~a~--------~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~---~----- 66 (113)
T cd02989 8 EVSDEKEFFE-IVK---SSERVVCHFYHP--------EFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAP---F----- 66 (113)
T ss_pred EeCCHHHHHH-HHh---CCCcEEEEEECC--------CCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCH---H-----
Confidence 3445555533 333 568999999997 99999999999999999887 6999999998866 3
Q ss_pred cccccccccccceEEEEeCCeEeEEecCc------chhcHHHHHHhh
Q 032841 89 RVNSRFKLTGVPTLFRWENDIVSGRLEDH------EAHLEHKIKALL 129 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~g~~~~~~~~~------~~~~~~~l~~~l 129 (132)
++++|+|+++||+++|++|+.++++.|. +....+.|+++|
T Consensus 67 -l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 67 -LVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred -HHHHCCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 7789999999999999999999988764 445667777776
No 18
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.83 E-value=3.4e-20 Score=120.95 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=77.1
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCC--ChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCC
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSW--CPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pW--C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 84 (132)
..+..+|++..+ .+..++|.|||+ | ||+|+.+.|.+.++++++++.+.|+.||+++.+ .
T Consensus 14 ~~~~~~~~~~~~-------~~~~~v~~f~~~--------~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~- 74 (111)
T cd02965 14 RVDAATLDDWLA-------AGGDLVLLLAGD--------PVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---A- 74 (111)
T ss_pred ccccccHHHHHh-------CCCCEEEEecCC--------cccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---H-
Confidence 345567777643 778899999998 7 999999999999999999878899999998866 3
Q ss_pred CCCccccccccccccceEEEEeCCeEeEEecCcc
Q 032841 85 QHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHE 118 (132)
Q Consensus 85 ~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~ 118 (132)
++.+|+|+++||+++|++|+.++++.|..
T Consensus 75 -----la~~f~V~sIPTli~fkdGk~v~~~~G~~ 103 (111)
T cd02965 75 -----LAARFGVLRTPALLFFRDGRYVGVLAGIR 103 (111)
T ss_pred -----HHHHcCCCcCCEEEEEECCEEEEEEeCcc
Confidence 88899999999999999999999998863
No 19
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.82 E-value=1.3e-19 Score=122.98 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=74.6
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
+.+-+++.+.+.. ..+++++|.|||+ ||+||+.+.|.|+++++++++.+.|+.||+|+.+ +
T Consensus 8 l~s~~e~d~~I~~--~~~~lVVvdF~A~--------WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---d------ 68 (142)
T PLN00410 8 LHSGWAVDQAILA--EEERLVVIRFGHD--------WDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---D------ 68 (142)
T ss_pred hCCHHHHHHHHHh--cCCCEEEEEEECC--------CChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---H------
Confidence 4566676554443 2678999999998 9999999999999999999867899999999877 3
Q ss_pred ccccccccccceEE-EEeCCe-EeEEecCc
Q 032841 90 VNSRFKLTGVPTLF-RWENDI-VSGRLEDH 117 (132)
Q Consensus 90 ~~~~~~v~~vPt~~-~~~~g~-~~~~~~~~ 117 (132)
++..|+|++.||++ +|++|+ .+++..|.
T Consensus 69 la~~y~I~~~~t~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 69 FNTMYELYDPCTVMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred HHHHcCccCCCcEEEEEECCeEEEEEeccc
Confidence 78899999887666 899998 88999884
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.82 E-value=1.4e-19 Score=122.83 Aligned_cols=87 Identities=17% Similarity=0.396 Sum_probs=76.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
++++++|+|||+ ||++|+.+.|.+.++.+++.+++.++.+|++..+ + ++.+|+|+++||+++|
T Consensus 51 ~~k~vvv~F~a~--------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~------l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 51 DDLPVVIDFWAP--------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---E------LSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCeEEEEEECC--------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---H------HHHhcCCCccCEEEEE
Confidence 689999999998 9999999999999999888778999999997755 2 6789999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++|+.+.++.|. ..++.|++||+.
T Consensus 114 ~~G~~v~~~~G~--~~~e~l~~~l~~ 137 (139)
T PRK10996 114 KNGQVVDMLNGA--VPKAPFDSWLNE 137 (139)
T ss_pred ECCEEEEEEcCC--CCHHHHHHHHHH
Confidence 999999998886 346677887763
No 21
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.7e-20 Score=131.93 Aligned_cols=100 Identities=20% Similarity=0.369 Sum_probs=84.1
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVN 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (132)
+..++..++-. ..++.++|+|+|+ ||+||+++.|++..++.+|+ +..|++||+++.. + ++
T Consensus 8 ~d~df~~~ls~--ag~k~v~Vdfta~--------wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~---~------ta 67 (288)
T KOG0908|consen 8 SDSDFQRELSA--AGGKLVVVDFTAS--------WCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECR---G------TA 67 (288)
T ss_pred CcHHHHHhhhc--cCceEEEEEEEec--------ccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhh---c------hh
Confidence 44455443333 3678999999998 99999999999999999997 8999999999877 4 77
Q ss_pred ccccccccceEEEEeCCeEeEEecCcch-hcHHHHHHhhhc
Q 032841 92 SRFKLTGVPTLFRWENDIVSGRLEDHEA-HLEHKIKALLSA 131 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~~g~~~~~~~~~~~-~~~~~l~~~l~~ 131 (132)
..+||+.+|||++|++|..+.++.|++. -.++.++++.++
T Consensus 68 a~~gV~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred hhcCcccCceEEEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999853 567778777664
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.81 E-value=5.5e-19 Score=114.69 Aligned_cols=87 Identities=20% Similarity=0.463 Sum_probs=74.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+||++ |||+|+.+.|.++++++++++++.++.+|++... . ++.+|+|+++||+++|
T Consensus 20 ~~~~vvv~f~~~--------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~------~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 20 ADGAILVDFWAE--------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---G------TAPKYGIRGIPTLLLF 82 (109)
T ss_pred CCCeEEEEEECC--------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---h------HHHhCCCCcCCEEEEE
Confidence 678999999997 9999999999999999999878999999998755 2 6678999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++|+.+.++.|.. ..+.|+++|.+
T Consensus 83 ~~G~~~~~~~G~~--~~~~l~~~i~~ 106 (109)
T PRK09381 83 KNGEVAATKVGAL--SKGQLKEFLDA 106 (109)
T ss_pred eCCeEEEEecCCC--CHHHHHHHHHH
Confidence 9999998888863 34567777653
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=3.1e-19 Score=116.76 Aligned_cols=87 Identities=16% Similarity=0.344 Sum_probs=74.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
.+++++|+|||+ ||++|+.+.|.+.++.+++.+ ++.++.||++... . ++.+++|+++||+++
T Consensus 23 ~~~~vlV~F~a~--------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~------l~~~~~V~~~Pt~~i 85 (111)
T cd02963 23 FKKPYLIKITSD--------WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---R------LARKLGAHSVPAIVG 85 (111)
T ss_pred CCCeEEEEEECC--------ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---H------HHHHcCCccCCEEEE
Confidence 689999999997 999999999999999999864 5899999998754 2 778999999999999
Q ss_pred EeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 105 WENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
|++|+.+.+..|. ...+.|.+||..
T Consensus 86 ~~~g~~~~~~~G~--~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSS--FTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCC--CCHHHHHHHHhc
Confidence 9999988888775 345678888764
No 24
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=3.2e-19 Score=116.94 Aligned_cols=84 Identities=11% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEe
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~ 106 (132)
+++++|+|||+ ||++|+.+.|.+++++++++ ++.|+.||++... ++.+|+|+++||+++|+
T Consensus 24 ~~~vvv~F~a~--------~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~~----------l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 24 GTRVVVHFYEP--------GFPRCKILDSHLEELAAKYP-ETKFVKINAEKAF----------LVNYLDIKVLPTLLVYK 84 (113)
T ss_pred CCEEEEEEeCC--------CCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhhH----------HHHhcCCCcCCEEEEEE
Confidence 58999999997 99999999999999999987 6899999987642 77899999999999999
Q ss_pred CCeEeEEecCc-----chhcHHHHHHhh
Q 032841 107 NDIVSGRLEDH-----EAHLEHKIKALL 129 (132)
Q Consensus 107 ~g~~~~~~~~~-----~~~~~~~l~~~l 129 (132)
+|+.+.++.|. +...++.|+.+|
T Consensus 85 ~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 85 NGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999875 345566676665
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.80 E-value=3.2e-19 Score=121.54 Aligned_cols=90 Identities=21% Similarity=0.465 Sum_probs=72.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+|||+ ||++|+.+.|.+.++.+++.+++.|+.|+++... |.. ++.+|+|.++||+++|
T Consensus 19 ~gk~vvV~F~A~--------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~------~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 19 NGKPTLVEFYAD--------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLP------EIDRYRVDGIPHFVFL 83 (142)
T ss_pred CCCEEEEEEECC--------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHH------HHHHcCCCCCCEEEEE
Confidence 789999999998 9999999999999999998767889999987532 222 5678999999999999
Q ss_pred e-CCeEeEEecCcc--hhcHHHHHHhhh
Q 032841 106 E-NDIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 106 ~-~g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
+ +|+.+.++.|.. ....+.|+++++
T Consensus 84 ~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 84 DREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 6 799999998863 223445555543
No 26
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.80 E-value=3.4e-19 Score=115.61 Aligned_cols=99 Identities=13% Similarity=0.329 Sum_probs=76.8
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC------CCcEEEEEEeCCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP------DDIALLQAYVGDR 78 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~------~~~~~~~v~~~~~ 78 (132)
++.++.++|++.++ ++++++|.|||+ ||++|+++.|.++++++.+. +++.++.+|++..
T Consensus 3 v~~l~~~~f~~~i~-------~~~~vlv~F~a~--------wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 3 IVSLTSGNIDDILQ-------SAELVLVNFYAD--------WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred eEEcCHhhHHHHHh-------cCCEEEEEEECC--------CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 45556667776543 678999999997 99999999999999887642 2588999999876
Q ss_pred cCccCCCCCccccccccccccceEEEEeCCeE-eEEecCcchhcHHHHHHhh
Q 032841 79 PTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV-SGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~-~~~~~~~~~~~~~~l~~~l 129 (132)
. + ++.+|+|+++||+++|++|+. ..++.|. ...+.|.+||
T Consensus 68 ~---~------l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~--~~~~~l~~fi 108 (108)
T cd02996 68 S---D------IADRYRINKYPTLKLFRNGMMMKREYRGQ--RSVEALAEFV 108 (108)
T ss_pred H---H------HHHhCCCCcCCEEEEEeCCcCcceecCCC--CCHHHHHhhC
Confidence 5 3 778999999999999999984 3555553 3455677765
No 27
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=2.3e-18 Score=121.10 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=79.3
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVN 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (132)
+.+++.+.+.. ...+.+++|+||++ ||++|+.+.|.|..++++++ .++|++||++... ++
T Consensus 69 ~~~~f~~~v~~-~~~~~~VVV~Fya~--------wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~~----------l~ 128 (175)
T cd02987 69 SGEQFLDAIDK-EGKDTTVVVHIYEP--------GIPGCAALNSSLLCLAAEYP-AVKFCKIRASATG----------AS 128 (175)
T ss_pred CHHHHHHHHHh-cCCCcEEEEEEECC--------CCchHHHHHHHHHHHHHHCC-CeEEEEEeccchh----------hH
Confidence 43555433322 22345999999997 99999999999999999997 7999999998642 67
Q ss_pred ccccccccceEEEEeCCeEeEEecCc-----chhcHHHHHHhhh
Q 032841 92 SRFKLTGVPTLFRWENDIVSGRLEDH-----EAHLEHKIKALLS 130 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~~g~~~~~~~~~-----~~~~~~~l~~~l~ 130 (132)
.+|+|+++||+++|++|+.+++++|. .....+.|+.+|.
T Consensus 129 ~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 129 DEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred HhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 89999999999999999999998865 3466777887775
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=1.3e-18 Score=111.34 Aligned_cols=99 Identities=22% Similarity=0.441 Sum_probs=77.5
Q ss_pred ccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCcc
Q 032841 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWR 82 (132)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 82 (132)
+++.++..+|++.+ ++. ++|.|||+ ||++|+.+.|.++++++.+. .++.++.+|+++..
T Consensus 2 ~v~~l~~~~f~~~~--------~~~-~lv~f~a~--------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~--- 61 (101)
T cd02994 2 NVVELTDSNWTLVL--------EGE-WMIEFYAP--------WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP--- 61 (101)
T ss_pred ceEEcChhhHHHHh--------CCC-EEEEEECC--------CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---
Confidence 34556666777652 233 68999997 99999999999999988765 36899999987754
Q ss_pred CCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 83 NPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 83 ~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
+ ++.+|+|+++||++++.+|+. .++.|. ...+.|.+||++
T Consensus 62 ~------~~~~~~i~~~Pt~~~~~~g~~-~~~~G~--~~~~~l~~~i~~ 101 (101)
T cd02994 62 G------LSGRFFVTALPTIYHAKDGVF-RRYQGP--RDKEDLISFIEE 101 (101)
T ss_pred h------HHHHcCCcccCEEEEeCCCCE-EEecCC--CCHHHHHHHHhC
Confidence 2 677999999999999998874 667664 456678888864
No 29
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.78 E-value=1.2e-18 Score=111.33 Aligned_cols=97 Identities=19% Similarity=0.410 Sum_probs=76.0
Q ss_pred ccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC---CcEEEEEEeCCCcCcc
Q 032841 6 SDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD---DIALLQAYVGDRPTWR 82 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 82 (132)
+.++.++|++.+. ++ +++|.|||+ ||++|+.+.|.++++++++.+ ++.++.+|++...
T Consensus 3 ~~l~~~~f~~~~~-------~~-~~lv~f~a~--------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~--- 63 (102)
T cd03005 3 LELTEDNFDHHIA-------EG-NHFVKFFAP--------WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR--- 63 (102)
T ss_pred eECCHHHHHHHhh-------cC-CEEEEEECC--------CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---
Confidence 3445455555432 34 599999997 999999999999999988764 6899999987654
Q ss_pred CCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 83 NPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 83 ~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+ ++++|+|.++||+++|++|+.+.++.|.. ..+.|.+||
T Consensus 64 ~------~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~--~~~~l~~~i 102 (102)
T cd03005 64 E------LCSEFQVRGYPTLLLFKDGEKVDKYKGTR--DLDSLKEFV 102 (102)
T ss_pred h------hHhhcCCCcCCEEEEEeCCCeeeEeeCCC--CHHHHHhhC
Confidence 2 67799999999999999998888888863 355677764
No 30
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.3e-19 Score=131.23 Aligned_cols=103 Identities=17% Similarity=0.421 Sum_probs=86.3
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 84 (132)
+++.|..||++.+ ++. ...+||+|+|||+ ||++|+.+.|.++++..+|.+.+.+++||+|..+ .
T Consensus 25 I~dvT~anfe~~V---~~~-S~~~PVlV~fWap--------~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~- 88 (304)
T COG3118 25 IKDVTEANFEQEV---IQS-SREVPVLVDFWAP--------WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---M- 88 (304)
T ss_pred ceechHhHHHHHH---HHH-ccCCCeEEEecCC--------CCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---h-
Confidence 4566677777763 221 2456999999997 9999999999999999999999999999999876 3
Q ss_pred CCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 85 QHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 85 ~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++..|||++|||++.|.+|+.+.-+.|.. .++.|++||+
T Consensus 89 -----vAaqfgiqsIPtV~af~dGqpVdgF~G~q--Pesqlr~~ld 127 (304)
T COG3118 89 -----VAAQFGVQSIPTVYAFKDGQPVDGFQGAQ--PESQLRQFLD 127 (304)
T ss_pred -----HHHHhCcCcCCeEEEeeCCcCccccCCCC--cHHHHHHHHH
Confidence 88899999999999999999998888873 4567777775
No 31
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.78 E-value=4e-18 Score=108.13 Aligned_cols=83 Identities=18% Similarity=0.402 Sum_probs=70.9
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEe
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~ 106 (132)
+++++|.||++ ||++|+.+.|.++++.+++...+.++.+|.+... . ++.+|+|+++||+++|+
T Consensus 14 ~~~v~v~f~~~--------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~------~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 14 SKLLVLHFWAP--------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---E------ISEKFEITAVPTFVFFR 76 (97)
T ss_pred CCEEEEEEECC--------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---H------HHHhcCCccccEEEEEE
Confidence 69999999997 9999999999999999886558999999987654 2 66789999999999999
Q ss_pred CCeEeEEecCcchhcHHHHHHhh
Q 032841 107 NDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+|+.+.++.|.. .+.|.+.|
T Consensus 77 ~g~~~~~~~g~~---~~~l~~~~ 96 (97)
T cd02984 77 NGTIVDRVSGAD---PKELAKKV 96 (97)
T ss_pred CCEEEEEEeCCC---HHHHHHhh
Confidence 999999998853 45566554
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.78 E-value=2.6e-18 Score=118.22 Aligned_cols=74 Identities=22% Similarity=0.459 Sum_probs=65.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccCCCCCccccccccccc------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTG------ 98 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~------ 98 (132)
.+++++|+|||+ ||++|+.+.|.++++++++. .++.|+.||+++.+ + ++.+|+|++
T Consensus 46 ~~~~vvV~Fya~--------wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~------la~~~~V~~~~~v~~ 108 (152)
T cd02962 46 KRVTWLVEFFTT--------WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---N------VAEKFRVSTSPLSKQ 108 (152)
T ss_pred CCCEEEEEEECC--------CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---H------HHHHcCceecCCcCC
Confidence 467999999997 99999999999999999886 46999999998866 3 666777777
Q ss_pred cceEEEEeCCeEeEEecC
Q 032841 99 VPTLFRWENDIVSGRLED 116 (132)
Q Consensus 99 vPt~~~~~~g~~~~~~~~ 116 (132)
+||+++|++|+++.|+.|
T Consensus 109 ~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 109 LPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCEEEEEECCEEEEEEec
Confidence 999999999999999998
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=1.9e-18 Score=111.78 Aligned_cols=102 Identities=18% Similarity=0.313 Sum_probs=77.4
Q ss_pred ccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCC
Q 032841 6 SDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQ 85 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 85 (132)
+.++..+|++.+. +++++++|.|||+ ||++|+.+.|.+.++++.+.+.+.++.+|++... .+.
T Consensus 3 ~~l~~~~~~~~i~------~~~~~~lv~f~a~--------wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~---~~~ 65 (109)
T cd03002 3 YELTPKNFDKVVH------NTNYTTLVEFYAP--------WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK---NKP 65 (109)
T ss_pred EEcchhhHHHHHh------cCCCeEEEEEECC--------CCHHHHhhChHHHHHHHHhcCCceEEEEecCccc---cHH
Confidence 3455566766543 3678899999997 9999999999999999988777899999987622 111
Q ss_pred CCccccccccccccceEEEEeCCeE-----eEEecCcchhcHHHHHHhhh
Q 032841 86 HPFRVNSRFKLTGVPTLFRWENDIV-----SGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 86 ~~~~~~~~~~v~~vPt~~~~~~g~~-----~~~~~~~~~~~~~~l~~~l~ 130 (132)
++.+|+|+++||+++|++|+. ..++.|. ...+.|.+||.
T Consensus 66 ----~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~--~~~~~l~~fi~ 109 (109)
T cd03002 66 ----LCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGE--RSAKAIVDFVL 109 (109)
T ss_pred ----HHHHcCCCcCCEEEEEeCCCcccccccccccCc--cCHHHHHHHhC
Confidence 677899999999999998862 3344453 34556777763
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.77 E-value=3.9e-18 Score=111.41 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
++++++|.|+|+ |||||+.+.|.++++++++++.+.|+.||+++.+ + +++.|+|++.||+++|
T Consensus 13 ~~klVVVdF~a~--------WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~---d------va~~y~I~amPtfvff 75 (114)
T cd02986 13 AEKVLVLRFGRD--------EDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP---V------YTQYFDISYIPSTIFF 75 (114)
T ss_pred CCCEEEEEEeCC--------CChhHHHHHHHHHHHHHHccCceEEEEEeccccH---H------HHHhcCceeCcEEEEE
Confidence 689999999998 9999999999999999999744999999999877 4 7889999999999999
Q ss_pred eCCeEe
Q 032841 106 ENDIVS 111 (132)
Q Consensus 106 ~~g~~~ 111 (132)
++|+-+
T Consensus 76 kngkh~ 81 (114)
T cd02986 76 FNGQHM 81 (114)
T ss_pred ECCcEE
Confidence 998764
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.76 E-value=4.5e-18 Score=108.88 Aligned_cols=87 Identities=20% Similarity=0.395 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
++++++|.|||+ ||++|+++.|.++++.+.+. +.+.++.+|++... .+. ++.+|+|+++||++
T Consensus 16 ~~~~~~v~f~a~--------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~----~~~~~~i~~~Pt~~ 80 (104)
T cd02997 16 KEKHVLVMFYAP--------WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE---HDA----LKEEYNVKGFPTFK 80 (104)
T ss_pred hCCCEEEEEECC--------CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc---cHH----HHHhCCCccccEEE
Confidence 567999999998 99999999999999988876 56788888887621 111 56789999999999
Q ss_pred EEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 104 RWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
++++|+.+.++.|.. ..+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~--~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGER--TAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCC--CHHHHHhhC
Confidence 999998887777753 344566654
No 36
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.76 E-value=6.8e-18 Score=107.65 Aligned_cols=87 Identities=9% Similarity=0.331 Sum_probs=74.7
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
..+++++|+||++ ||+.|+.+.|.++++.+++++++.++.+|+++.+ + ++.+++|.++||+++
T Consensus 11 ~~~~~vlv~f~a~--------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~------l~~~~~v~~vPt~~i 73 (97)
T cd02949 11 ESDRLILVLYTSP--------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---E------IAEAAGIMGTPTVQF 73 (97)
T ss_pred hCCCeEEEEEECC--------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---H------HHHHCCCeeccEEEE
Confidence 3789999999997 9999999999999999888777999999997754 2 667899999999999
Q ss_pred EeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 105 WENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+++|+.+.++.|... .+.+.++|+
T Consensus 74 ~~~g~~v~~~~g~~~--~~~~~~~l~ 97 (97)
T cd02949 74 FKDKELVKEISGVKM--KSEYREFIE 97 (97)
T ss_pred EECCeEEEEEeCCcc--HHHHHHhhC
Confidence 999999999988643 456777764
No 37
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.76 E-value=7.4e-18 Score=112.10 Aligned_cols=93 Identities=10% Similarity=0.166 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCCCCc-ccccc----ccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQHPF-RVNSR----FKLTG 98 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~-~~~~~----~~v~~ 98 (132)
+++.++|+|+++ |||+|+.+.|.|.++.++. ++.++.||++... +..+.. .+ ...+. ++|.+
T Consensus 22 ~~~~~iv~f~~~--------~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~-~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 22 KKETATFFIGRK--------TCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLN-DLTAFRSRFGIPTSFMG 90 (122)
T ss_pred cCCcEEEEEECC--------CChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHH-HHHHHHHHcCCcccCCC
Confidence 788899999997 9999999999999999873 5778889987543 100000 00 01123 56777
Q ss_pred cceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 99 VPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 99 vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+||+++|++|++++++.|... ..+.|+.|+.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~-~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSST-TAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCC-CHHHHHHHhh
Confidence 999999999999999988743 4667888764
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=7.6e-18 Score=122.40 Aligned_cols=107 Identities=18% Similarity=0.316 Sum_probs=81.5
Q ss_pred ccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccC
Q 032841 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRN 83 (132)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 83 (132)
.++.++..+|++.+..-. ...+++++|+|||+ ||++|+.+.|.++++++++++.+.+..+|++... +
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~--~~~~~~vlV~FyAp--------WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~ 97 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQAST--GATTGPWFVKFYAP--------WCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---N 97 (224)
T ss_pred CcEECCHHHHHHHHhhhc--ccCCCCEEEEEECC--------CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---H
Confidence 345566667777532100 11357999999997 9999999999999999999877889999987654 3
Q ss_pred CCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 84 PQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 84 ~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++++|+|+++||+++|++|+.+.+..|. ...+.|.+|+.+
T Consensus 98 ------l~~~~~I~~~PTl~~f~~G~~v~~~~G~--~s~e~L~~fi~~ 137 (224)
T PTZ00443 98 ------LAKRFAIKGYPTLLLFDKGKMYQYEGGD--RSTEKLAAFALG 137 (224)
T ss_pred ------HHHHcCCCcCCEEEEEECCEEEEeeCCC--CCHHHHHHHHHH
Confidence 7789999999999999999877665553 345567777653
No 39
>PTZ00051 thioredoxin; Provisional
Probab=99.75 E-value=1.1e-17 Score=106.36 Aligned_cols=75 Identities=21% Similarity=0.416 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+||++ ||++|+.+.|.++++.++++ ++.++.+|.+... + ++.+|+|+++||++++
T Consensus 17 ~~~~vli~f~~~--------~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~---~------~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 17 QNELVIVDFYAE--------WCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELS---E------VAEKENITSMPTFKVF 78 (98)
T ss_pred cCCeEEEEEECC--------CCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchH---H------HHHHCCCceeeEEEEE
Confidence 788999999998 99999999999999998876 6899999987654 2 6789999999999999
Q ss_pred eCCeEeEEecCcc
Q 032841 106 ENDIVSGRLEDHE 118 (132)
Q Consensus 106 ~~g~~~~~~~~~~ 118 (132)
++|+.++++.|..
T Consensus 79 ~~g~~~~~~~G~~ 91 (98)
T PTZ00051 79 KNGSVVDTLLGAN 91 (98)
T ss_pred eCCeEEEEEeCCC
Confidence 9999999999963
No 40
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=1.7e-17 Score=106.17 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=75.1
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCC
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQH 86 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 86 (132)
..+..+|++.+. +.+++++|.||++ ||++|+.+.|.+.++++++.+.+.++.+|++... +
T Consensus 4 ~l~~~~~~~~i~------~~~~~vlv~f~a~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~--- 63 (103)
T cd03001 4 ELTDSNFDKKVL------NSDDVWLVEFYAP--------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---S--- 63 (103)
T ss_pred EcCHHhHHHHHh------cCCCcEEEEEECC--------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---H---
Confidence 344445555432 3567799999997 9999999999999999888778999999998755 2
Q ss_pred CccccccccccccceEEEEeCC-eEeEEecCcchhcHHHHHHhh
Q 032841 87 PFRVNSRFKLTGVPTLFRWEND-IVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 87 ~~~~~~~~~v~~vPt~~~~~~g-~~~~~~~~~~~~~~~~l~~~l 129 (132)
++.+|+|+++||+++|++| ....++.|. ...+.|.+|+
T Consensus 64 ---~~~~~~i~~~P~~~~~~~~~~~~~~~~g~--~~~~~l~~~~ 102 (103)
T cd03001 64 ---LAQQYGVRGFPTIKVFGAGKNSPQDYQGG--RTAKAIVSAA 102 (103)
T ss_pred ---HHHHCCCCccCEEEEECCCCcceeecCCC--CCHHHHHHHh
Confidence 6779999999999999988 334455554 4555677765
No 41
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.74 E-value=1.2e-17 Score=109.71 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=65.4
Q ss_pred HhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccccccc
Q 032841 20 FKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGV 99 (132)
Q Consensus 20 ~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~v 99 (132)
+.+....+..++|+|||+ |||+|+.+.|.++++.+.+ +.+.++.+|++..+ . ++.+|+|+++
T Consensus 15 ~~~~l~~~~~vvv~f~a~--------wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~------l~~~~~v~~v 76 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKE--------GCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---E------KAEKYGVERV 76 (113)
T ss_pred HHHHhCCCeEEEEEeCCC--------CCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---H------HHHHcCCCcC
Confidence 333344677899999997 9999999999999999887 47899999998755 2 7789999999
Q ss_pred ceEEEEeCCeEeE--EecCc
Q 032841 100 PTLFRWENDIVSG--RLEDH 117 (132)
Q Consensus 100 Pt~~~~~~g~~~~--~~~~~ 117 (132)
||++++++|+..+ ++.|.
T Consensus 77 Pt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 77 PTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CEEEEEeCCeecceEEEEec
Confidence 9999999876544 56564
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.74 E-value=3.5e-17 Score=103.75 Aligned_cols=87 Identities=18% Similarity=0.447 Sum_probs=74.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+||++ ||++|+.+.|.+.++.+++++++.|+.+|++... . ++.+|+|+++||+++|
T Consensus 13 ~~~~vvi~f~~~--------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~------~~~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 13 SDKPVLVDFWAP--------WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---D------IAAKYGIRSIPTLLLF 75 (101)
T ss_pred cCCcEEEEEECC--------CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---H------HHHHcCCCcCCEEEEE
Confidence 567999999997 9999999999999999888778999999998755 2 6678999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++|+.+.++.|.. ..+.+..+|++
T Consensus 76 ~~g~~~~~~~g~~--~~~~l~~~l~~ 99 (101)
T TIGR01068 76 KNGKEVDRSVGAL--PKAALKQLINK 99 (101)
T ss_pred eCCcEeeeecCCC--CHHHHHHHHHh
Confidence 9998888877763 45678887764
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.74 E-value=6.4e-18 Score=108.87 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHH---HHHHHhCCCCcEEEEEEeCCCcCc-cCCCCCccccccccccccce
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVI---YKTLEASPDDIALLQAYVGDRPTW-RNPQHPFRVNSRFKLTGVPT 101 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~v~~vPt 101 (132)
++++++|+|||+ ||++|+.+.|.+ .++.+.+.+++.++.+|++..... .. ++.+|+|.++||
T Consensus 10 ~~k~vlv~f~a~--------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~------~~~~~~i~~~Pt 75 (104)
T cd02953 10 QGKPVFVDFTAD--------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITA------LLKRFGVFGPPT 75 (104)
T ss_pred cCCeEEEEEEcc--------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHH------HHHHcCCCCCCE
Confidence 789999999998 999999999988 567766666899999998763210 11 567899999999
Q ss_pred EEEEe--CCeEeEEecCcchhcHHHHHHhhh
Q 032841 102 LFRWE--NDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 102 ~~~~~--~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+++|+ +|+.+.++.|.. ..+.|.++|+
T Consensus 76 i~~~~~~~g~~~~~~~G~~--~~~~l~~~l~ 104 (104)
T cd02953 76 YLFYGPGGEPEPLRLPGFL--TADEFLEALE 104 (104)
T ss_pred EEEECCCCCCCCccccccc--CHHHHHHHhC
Confidence 99999 688788887763 3456777664
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.73 E-value=2.4e-17 Score=106.33 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=68.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCccCCCCCccccccccccccceE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTL 102 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~ 102 (132)
++++++|.|||+ ||++|+++.|.++++++++. .++.+..+|++... + ++.+|+|+++||+
T Consensus 14 ~~~~vlv~f~a~--------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~------~~~~~~I~~~Pt~ 76 (104)
T cd03000 14 KEDIWLVDFYAP--------WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---S------IASEFGVRGYPTI 76 (104)
T ss_pred cCCeEEEEEECC--------CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---h------HHhhcCCccccEE
Confidence 567999999998 99999999999999988873 34888888887654 2 6778999999999
Q ss_pred EEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 103 FRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++|++|. ..++.|. ...+.|..|++.
T Consensus 77 ~l~~~~~-~~~~~G~--~~~~~l~~~~~~ 102 (104)
T cd03000 77 KLLKGDL-AYNYRGP--RTKDDIVEFANR 102 (104)
T ss_pred EEEcCCC-ceeecCC--CCHHHHHHHHHh
Confidence 9998764 4556664 456677888753
No 45
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=2.3e-17 Score=105.47 Aligned_cols=97 Identities=19% Similarity=0.329 Sum_probs=74.5
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC--CcEEEEEEeCCCcCccCC
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD--DIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 84 (132)
.++..+|++.+. +++++++|+|||+ ||++|+.+.|.+.++++.+.+ ++.++.+|++...
T Consensus 4 ~l~~~~f~~~i~------~~~~~~~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----- 64 (104)
T cd02995 4 VVVGKNFDEVVL------DSDKDVLVEFYAP--------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----- 64 (104)
T ss_pred EEchhhhHHHHh------CCCCcEEEEEECC--------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----
Confidence 344557766533 3568999999997 999999999999999988764 5889999987643
Q ss_pred CCCccccccccccccceEEEEeCCe--EeEEecCcchhcHHHHHHhh
Q 032841 85 QHPFRVNSRFKLTGVPTLFRWENDI--VSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 85 ~~~~~~~~~~~v~~vPt~~~~~~g~--~~~~~~~~~~~~~~~l~~~l 129 (132)
++..+++.++||+++|.+|+ ...++.|. .+.+.|..||
T Consensus 65 -----~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~--~~~~~l~~fi 104 (104)
T cd02995 65 -----VPSEFVVDGFPTILFFPAGDKSNPIKYEGD--RTLEDLIKFI 104 (104)
T ss_pred -----hhhhccCCCCCEEEEEcCCCcCCceEccCC--cCHHHHHhhC
Confidence 55678999999999999887 44455554 4455666664
No 46
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.73 E-value=3.3e-17 Score=106.64 Aligned_cols=104 Identities=12% Similarity=0.295 Sum_probs=75.5
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeCCCcCccC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVGDRPTWRN 83 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 83 (132)
++.++..+|+++.. ..+++++++|.|||+ ||++|+++.|.+.++++.+.+ ++.++.||++... ..
T Consensus 3 v~~~~~~~~~~~~~----~~~~~k~vlv~f~a~--------wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~ 68 (109)
T cd02993 3 VVTLSRAEIEALAK----GERRNQSTLVVLYAP--------WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--RE 68 (109)
T ss_pred ceeccHHHHHHHHh----hhhcCCCEEEEEECC--------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hh
Confidence 44556666666532 223688999999997 999999999999999988874 5889999987622 01
Q ss_pred CCCCccccc-cccccccceEEEEeCCe-EeEEecCcchhcHHHHHHhh
Q 032841 84 PQHPFRVNS-RFKLTGVPTLFRWENDI-VSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 84 ~~~~~~~~~-~~~v~~vPt~~~~~~g~-~~~~~~~~~~~~~~~l~~~l 129 (132)
++. .|+|+++||+++|++|. ....+.|.. .+.+.|..||
T Consensus 69 ------~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~-~~~~~l~~f~ 109 (109)
T cd02993 69 ------FAKEELQLKSFPTILFFPKNSRQPIKYPSEQ-RDVDSLLMFV 109 (109)
T ss_pred ------hHHhhcCCCcCCEEEEEcCCCCCceeccCCC-CCHHHHHhhC
Confidence 444 59999999999998764 444555532 3555666664
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=3.4e-17 Score=104.75 Aligned_cols=98 Identities=20% Similarity=0.386 Sum_probs=74.2
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCC-CcCccC
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGD-RPTWRN 83 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~-~~~~~~ 83 (132)
.++..+|++.+. .++++++|.|||+ ||++|+.+.|.+.++++.+. +++.++.+|.+. .. +
T Consensus 4 ~l~~~~~~~~~~------~~~~~~~v~f~a~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~ 66 (105)
T cd02998 4 ELTDSNFDKVVG------DDKKDVLVEFYAP--------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---D 66 (105)
T ss_pred EcchhcHHHHhc------CCCCcEEEEEECC--------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---h
Confidence 344455555422 3567999999997 99999999999999998876 468999999877 44 3
Q ss_pred CCCCccccccccccccceEEEEeCC-eEeEEecCcchhcHHHHHHhh
Q 032841 84 PQHPFRVNSRFKLTGVPTLFRWEND-IVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 84 ~~~~~~~~~~~~v~~vPt~~~~~~g-~~~~~~~~~~~~~~~~l~~~l 129 (132)
++.+|+|+++||+++|++| +...++.|. ...+.|.+||
T Consensus 67 ------~~~~~~i~~~P~~~~~~~~~~~~~~~~g~--~~~~~l~~~i 105 (105)
T cd02998 67 ------LAKKYGVSGFPTLKFFPKGSTEPVKYEGG--RDLEDLVKFV 105 (105)
T ss_pred ------hHHhCCCCCcCEEEEEeCCCCCccccCCc--cCHHHHHhhC
Confidence 7789999999999999977 344455554 4456677664
No 48
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.72 E-value=2.9e-17 Score=104.58 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=72.3
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC--CcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD--DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
++++++|+||++ ||++|+.+.|.++++++.+.+ ++.++.+|++... . ++.+|+|+++||++
T Consensus 12 ~~~~~~i~f~~~--------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~------~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 12 SNKDVLVEFYAP--------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---D------LASRFGVSGFPTIK 74 (102)
T ss_pred cCCcEEEEEECC--------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---H------HHHhCCCCcCCEEE
Confidence 688999999998 999999999999999888764 6999999987754 2 67789999999999
Q ss_pred EEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 104 RWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
+|++|+...++.|. ...+.|..||++
T Consensus 75 ~~~~~~~~~~~~g~--~~~~~l~~~i~~ 100 (102)
T TIGR01126 75 FFPKGKKPVDYEGG--RDLEAIVEFVNE 100 (102)
T ss_pred EecCCCcceeecCC--CCHHHHHHHHHh
Confidence 99988766677775 345567787764
No 49
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.70 E-value=1.6e-16 Score=113.14 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+.+|+|+||++ ||++|+.+.|.|.+++.+++ .++|++|+++.. ...|+++++||+++|
T Consensus 101 ~~~~VVV~Fya~--------wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~------------~~~~~i~~lPTlliy 159 (192)
T cd02988 101 KDTWVVVHLYKD--------GIPLCRLLNQHLSELARKFP-DTKFVKIISTQC------------IPNYPDKNLPTILVY 159 (192)
T ss_pred CCCEEEEEEECC--------CCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh------------HhhCCCCCCCEEEEE
Confidence 346899999998 99999999999999999997 799999999752 257999999999999
Q ss_pred eCCeEeEEecCc-----chhcHHHHHHhhh
Q 032841 106 ENDIVSGRLEDH-----EAHLEHKIKALLS 130 (132)
Q Consensus 106 ~~g~~~~~~~~~-----~~~~~~~l~~~l~ 130 (132)
++|+.+++++|. .....+.|+.+|.
T Consensus 160 k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 160 RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 999999999875 3455667777765
No 50
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.69 E-value=1.5e-16 Score=105.71 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=62.9
Q ss_pred CCC-CeEEEEEEeeCCCCCCCCCChhHHhhhHHHH---HHHHhCCCCcEEEEEEeCCCcCccCC----CCCccccccccc
Q 032841 25 PKN-KANFILFLADKDPSTSLSWCPDCVRAEPVIY---KTLEASPDDIALLQAYVGDRPTWRNP----QHPFRVNSRFKL 96 (132)
Q Consensus 25 ~~~-~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~v 96 (132)
.++ ++++|+|||+ ||++|+++.|.+. .+.+.+.+++.++.+|++....-.+. ...-.++.+|+|
T Consensus 11 ~~~~k~vlv~f~a~--------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 11 ADGKKPLLLLFSQP--------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HcCCCcEEEEEeCC--------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 377 9999999998 9999999999885 45555555788999998764210000 000125678999
Q ss_pred cccceEEEEeC--CeEeEEecCc
Q 032841 97 TGVPTLFRWEN--DIVSGRLEDH 117 (132)
Q Consensus 97 ~~vPt~~~~~~--g~~~~~~~~~ 117 (132)
+++||++++++ |+.+.++.|.
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCC
Confidence 99999999986 5788888886
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.69 E-value=1.1e-16 Score=100.93 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhC--CCCcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEAS--PDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
++++++|+||++ ||++|+.+.|.+.++++.+ ..++.++.+|++... . ++.+|+|+++||++
T Consensus 14 ~~~~~~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~------~~~~~~i~~~Pt~~ 76 (101)
T cd02961 14 DSKDVLVEFYAP--------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---D------LCSEYGVRGYPTIK 76 (101)
T ss_pred CCCcEEEEEECC--------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---H------HHHhCCCCCCCEEE
Confidence 566999999997 9999999999999999888 568999999987744 2 77899999999999
Q ss_pred EEeCC-eEeEEecCcchhcHHHHHHhh
Q 032841 104 RWEND-IVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 104 ~~~~g-~~~~~~~~~~~~~~~~l~~~l 129 (132)
+|++| ....++.|.. ..+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~--~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPR--TLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCc--CHHHHHhhC
Confidence 99987 5566666653 455666654
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.66 E-value=1.9e-15 Score=93.41 Aligned_cols=85 Identities=19% Similarity=0.447 Sum_probs=71.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++++|+||++ ||++|+.+.|.++++.+. .+++.++.+|++... + ++.+|++.++||++++
T Consensus 9 ~~~~~ll~~~~~--------~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~------~~~~~~v~~~P~~~~~ 70 (93)
T cd02947 9 SAKPVVVDFWAP--------WCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---E------LAEEYGVRSIPTFLFF 70 (93)
T ss_pred cCCcEEEEEECC--------CChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---h------HHHhcCcccccEEEEE
Confidence 458999999997 999999999999999888 458999999998744 2 6678999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhhh
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++|+.+.++.|.. ..+.|..+|+
T Consensus 71 ~~g~~~~~~~g~~--~~~~l~~~i~ 93 (93)
T cd02947 71 KNGKEVDRVVGAD--PKEELEEFLE 93 (93)
T ss_pred ECCEEEEEEecCC--CHHHHHHHhC
Confidence 9999888888764 3467777763
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.65 E-value=1.8e-15 Score=108.53 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=59.6
Q ss_pred CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeC
Q 032841 28 KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 28 ~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~ 107 (132)
..++++|||+ |||+|+.+.|.+.++.++++ .+.|+.||.+ |+|.++||+++|++
T Consensus 18 g~~vl~f~a~--------w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 18 GKLVLYVKSS--------KEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------------DANNEYGVFEFYQN 71 (204)
T ss_pred CcEEEEEeCC--------CCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------------cCcccceEEEEEEC
Confidence 6688999997 99999999999999999997 7999999742 89999999999999
Q ss_pred CeEeEEecCcc
Q 032841 108 DIVSGRLEDHE 118 (132)
Q Consensus 108 g~~~~~~~~~~ 118 (132)
|+.++|+.|.+
T Consensus 72 g~~i~r~~G~~ 82 (204)
T PTZ00062 72 SQLINSLEGCN 82 (204)
T ss_pred CEEEeeeeCCC
Confidence 99999999974
No 54
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.64 E-value=8.2e-16 Score=101.54 Aligned_cols=87 Identities=17% Similarity=0.371 Sum_probs=62.8
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVN 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (132)
++++.++... .++++++|+|||+ ||++|+.+.|.+.+..........|+.|+++... ++ ..
T Consensus 7 ~~~~al~~A~---~~~kpVlV~F~a~--------WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~---~~-----~~ 67 (117)
T cd02959 7 TLEDGIKEAK---DSGKPLMLLIHKT--------WCGACKALKPKFAESKEISELSHNFVMVNLEDDE---EP-----KD 67 (117)
T ss_pred eHHHHHHHHH---HcCCcEEEEEeCC--------cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC---Cc-----hh
Confidence 4444433333 4889999999998 9999999999999976544334567778887643 11 23
Q ss_pred ccccccc--cceEEEEe-CCeEeEEecCc
Q 032841 92 SRFKLTG--VPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 92 ~~~~v~~--vPt~~~~~-~g~~~~~~~~~ 117 (132)
..|++.+ +||+++++ +|+.+.++.+.
T Consensus 68 ~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~ 96 (117)
T cd02959 68 EEFSPDGGYIPRILFLDPSGDVHPEIINK 96 (117)
T ss_pred hhcccCCCccceEEEECCCCCCchhhccC
Confidence 5788876 99999997 78887765543
No 55
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.63 E-value=1.7e-15 Score=119.82 Aligned_cols=107 Identities=13% Similarity=0.296 Sum_probs=78.9
Q ss_pred ccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeCCCcCcc
Q 032841 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVGDRPTWR 82 (132)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 82 (132)
.++.++.++|++++. ..+.+++++|+|||+ ||++|+.+.|.++++++++.+ ++.|+.||++...
T Consensus 352 ~Vv~L~~~nf~~~v~----~~~~~k~VLV~FyAp--------WC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--- 416 (463)
T TIGR00424 352 NVVSLSRPGIENLLK----LEERKEAWLVVLYAP--------WCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--- 416 (463)
T ss_pred CeEECCHHHHHHHHh----hhcCCCeEEEEEECC--------CChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc---
Confidence 345566677777642 124789999999997 999999999999999999864 4899999987642
Q ss_pred CCCCCccc-cccccccccceEEEEeCCeE-eEEecCcchhcHHHHHHhhhc
Q 032841 83 NPQHPFRV-NSRFKLTGVPTLFRWENDIV-SGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 83 ~~~~~~~~-~~~~~v~~vPt~~~~~~g~~-~~~~~~~~~~~~~~l~~~l~~ 131 (132)
. . + +.+|+|+++||+++|++|.. ...+.+ +..+.+.|..|++.
T Consensus 417 ~-~----~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~-g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 417 K-E----FAKQELQLGSFPTILFFPKHSSRPIKYPS-EKRDVDSLMSFVNL 461 (463)
T ss_pred c-H----HHHHHcCCCccceEEEEECCCCCceeCCC-CCCCHHHHHHHHHh
Confidence 0 0 2 25799999999999998853 223332 23556678888863
No 56
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.62 E-value=1.2e-15 Score=100.30 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=63.8
Q ss_pred ccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCcc
Q 032841 6 SDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTWR 82 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~~ 82 (132)
+.++..+|++.+. +++++++|.|||+ ||++|+.+.|.++++++++. +.+.++.+|++...
T Consensus 4 ~~l~~~~f~~~i~------~~~~~vvV~f~a~--------wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--- 66 (114)
T cd02992 4 IVLDAASFNSALL------GSPSAWLVEFYAS--------WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--- 66 (114)
T ss_pred EECCHHhHHHHHh------cCCCeEEEEEECC--------CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---
Confidence 3445556666533 3568999999997 99999999999999988764 34888888875422
Q ss_pred CCCCCccccccccccccceEEEEeCCeE
Q 032841 83 NPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 83 ~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
.+. ++++|+|+++||+++|++|..
T Consensus 67 ~~~----~~~~~~i~~~Pt~~lf~~~~~ 90 (114)
T cd02992 67 NVA----LCRDFGVTGYPTLRYFPPFSK 90 (114)
T ss_pred hHH----HHHhCCCCCCCEEEEECCCCc
Confidence 111 667899999999999998763
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=5e-15 Score=117.14 Aligned_cols=104 Identities=13% Similarity=0.288 Sum_probs=75.8
Q ss_pred ccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC-CCcCccC
Q 032841 6 SDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG-DRPTWRN 83 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~ 83 (132)
+.++.++|+++ +...+.+++++|+|||+ ||++|+.+.|.+.++++++. .++.|+.+|++ ... .
T Consensus 348 v~Lt~~nfe~l----l~~~~~~k~vlV~FyAp--------WC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~ 412 (457)
T PLN02309 348 VALSRAGIENL----LKLENRKEPWLVVLYAP--------WCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---E 412 (457)
T ss_pred EECCHHHHHHH----HHhhcCCCeEEEEEECC--------CChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---H
Confidence 34444455554 33334789999999997 99999999999999999886 45999999998 322 1
Q ss_pred CCCCccccc-cccccccceEEEEeCCeEeE-EecCcchhcHHHHHHhhhc
Q 032841 84 PQHPFRVNS-RFKLTGVPTLFRWENDIVSG-RLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 84 ~~~~~~~~~-~~~v~~vPt~~~~~~g~~~~-~~~~~~~~~~~~l~~~l~~ 131 (132)
++. +|+|+++||+++|.+|.... .+.+ +..+.+.|..|++.
T Consensus 413 ------la~~~~~I~~~PTil~f~~g~~~~v~Y~~-~~R~~~~L~~fv~~ 455 (457)
T PLN02309 413 ------FAKQELQLGSFPTILLFPKNSSRPIKYPS-EKRDVDSLLSFVNS 455 (457)
T ss_pred ------HHHhhCCCceeeEEEEEeCCCCCeeecCC-CCcCHHHHHHHHHH
Confidence 454 69999999999999875322 2332 23455678888864
No 58
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.59 E-value=4.8e-15 Score=97.51 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEe--eCCCCCCCCCCh---hHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLA--DKDPSTSLSWCP---DCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a--~~~~~~~~pWC~---~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
.+.++..+|++++. +++.++|.|+| + ||+ +|+.+.|.+.+... .+.+..||+++..
T Consensus 3 ~v~L~~~nF~~~v~-------~~~~vlV~F~A~~P--------wc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~ 63 (116)
T cd03007 3 CVDLDTVTFYKVIP-------KFKYSLVKFDTAYP--------YGEKHEAFTRLAESSASATD----DLLVAEVGIKDYG 63 (116)
T ss_pred eeECChhhHHHHHh-------cCCcEEEEEeCCCC--------CCCChHHHHHHHHHHHhhcC----ceEEEEEeccccc
Confidence 46778889999865 78899999999 6 888 77777776665542 4889999996533
Q ss_pred CccCCCCCcccccccccc--ccceEEEEeCCe--EeEEecCcchhcHHHHHHhhhc
Q 032841 80 TWRNPQHPFRVNSRFKLT--GVPTLFRWENDI--VSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~--~vPt~~~~~~g~--~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
+-.+.. ++.+|+|+ ++||+.+|++|+ ....+.|.+ ...+.|.+|+..
T Consensus 64 ~~~~~~----L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~-r~~~~lv~~v~~ 114 (116)
T cd03007 64 EKLNME----LGERYKLDKESYPVIYLFHGGDFENPVPYSGAD-VTVDALQRFLKG 114 (116)
T ss_pred chhhHH----HHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCc-ccHHHHHHHHHh
Confidence 100111 88999999 999999999885 333455532 455667788764
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.58 E-value=8e-15 Score=115.32 Aligned_cols=100 Identities=18% Similarity=0.318 Sum_probs=78.1
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTW 81 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~ 81 (132)
++.++..+|++.++ ++++++|.|||+ ||++|+++.|.+.++++.+. .++.++.||++...
T Consensus 3 v~~l~~~~~~~~i~-------~~~~~~v~f~a~--------wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-- 65 (462)
T TIGR01130 3 VLVLTKDNFDDFIK-------SHEFVLVEFYAP--------WCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-- 65 (462)
T ss_pred ceECCHHHHHHHHh-------cCCCEEEEEECC--------CCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH--
Confidence 44556666666543 678999999997 99999999999999887664 34899999998765
Q ss_pred cCCCCCccccccccccccceEEEEeCCeE-eEEecCcchhcHHHHHHhhh
Q 032841 82 RNPQHPFRVNSRFKLTGVPTLFRWENDIV-SGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 82 ~~~~~~~~~~~~~~v~~vPt~~~~~~g~~-~~~~~~~~~~~~~~l~~~l~ 130 (132)
. ++.+|+|.++||+++|++|+. +.++.|.. ..+.|.+|+.
T Consensus 66 -~------l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~--~~~~l~~~i~ 106 (462)
T TIGR01130 66 -D------LAQKYGVSGYPTLKIFRNGEDSVSDYNGPR--DADGIVKYMK 106 (462)
T ss_pred -H------HHHhCCCccccEEEEEeCCccceeEecCCC--CHHHHHHHHH
Confidence 3 778999999999999999887 66777753 3445666654
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.57 E-value=1.2e-14 Score=115.20 Aligned_cols=99 Identities=20% Similarity=0.355 Sum_probs=76.6
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTW 81 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~ 81 (132)
++.++..+|++.+. +++.++|.|||+ ||++|+++.|.+.++++.+. .++.++.||++...
T Consensus 34 v~~l~~~~f~~~i~-------~~~~~lv~f~a~--------wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-- 96 (477)
T PTZ00102 34 VTVLTDSTFDKFIT-------ENEIVLVKFYAP--------WCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-- 96 (477)
T ss_pred cEEcchhhHHHHHh-------cCCcEEEEEECC--------CCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH--
Confidence 34455555655432 678999999997 99999999999999886653 46999999987755
Q ss_pred cCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 82 RNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 82 ~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+ ++.+|+|+++||+++|++|+.+ ++.|. ...+.|.+|+.
T Consensus 97 -~------l~~~~~i~~~Pt~~~~~~g~~~-~y~g~--~~~~~l~~~l~ 135 (477)
T PTZ00102 97 -E------LAQEFGVRGYPTIKFFNKGNPV-NYSGG--RTADGIVSWIK 135 (477)
T ss_pred -H------HHHhcCCCcccEEEEEECCceE-EecCC--CCHHHHHHHHH
Confidence 3 7789999999999999999876 77765 34456666664
No 61
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.9e-15 Score=116.42 Aligned_cols=101 Identities=18% Similarity=0.324 Sum_probs=81.9
Q ss_pred ccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcC
Q 032841 4 NLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPT 80 (132)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~ 80 (132)
.+++++.++|++++. .+..++|.|||+ ||++|+++.|-+.+++..+. ..+.+++||.....
T Consensus 26 ~Vl~Lt~dnf~~~i~-------~~~~vlVeFYAP--------WCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~- 89 (493)
T KOG0190|consen 26 DVLVLTKDNFKETIN-------GHEFVLVEFYAP--------WCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES- 89 (493)
T ss_pred ceEEEecccHHHHhc-------cCceEEEEEEch--------hhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-
Confidence 467788889999865 788999999996 99999999999999988775 37899999987765
Q ss_pred ccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 81 WRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+ ++.+|+|+|+||+-+|++|+....+.|. ...+.|-.|+.
T Consensus 90 --~------~~~~y~v~gyPTlkiFrnG~~~~~Y~G~--r~adgIv~wl~ 129 (493)
T KOG0190|consen 90 --D------LASKYEVRGYPTLKIFRNGRSAQDYNGP--READGIVKWLK 129 (493)
T ss_pred --h------hHhhhcCCCCCeEEEEecCCcceeccCc--ccHHHHHHHHH
Confidence 4 8899999999999999999863344444 33445556654
No 62
>PTZ00102 disulphide isomerase; Provisional
Probab=99.56 E-value=2.8e-14 Score=113.15 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCcCccCCCCCccccccccccccceE
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTL 102 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~ 102 (132)
+++++++|+|||+ ||++|+.+.|.++++++.+. +.+.++.+|.+.+. . .+..|+++++||+
T Consensus 373 ~~~k~vlv~f~a~--------wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~---~------~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 373 KSDKDVLLEIYAP--------WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE---T------PLEEFSWSAFPTI 435 (477)
T ss_pred cCCCCEEEEEECC--------CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc---c------chhcCCCcccCeE
Confidence 3789999999997 99999999999999988775 35889999987654 2 4568999999999
Q ss_pred EEEeCCeEe-EEecCcchhcHHHHHHhhhc
Q 032841 103 FRWENDIVS-GRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 103 ~~~~~g~~~-~~~~~~~~~~~~~l~~~l~~ 131 (132)
++|++|+.+ .++.|. ...+.+.+||++
T Consensus 436 ~~~~~~~~~~~~~~G~--~~~~~l~~~i~~ 463 (477)
T PTZ00102 436 LFVKAGERTPIPYEGE--RTVEGFKEFVNK 463 (477)
T ss_pred EEEECCCcceeEecCc--CCHHHHHHHHHH
Confidence 999987654 356664 345677777764
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.55 E-value=1.1e-14 Score=93.11 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccccc--ccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLT--GVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~vPt~~ 103 (132)
.++++++.|+++ ||++|+.+.|.++++++++.+++.|+.||+++.+ + ++..|+|. ++||++
T Consensus 11 ~~~~~~~~f~~~--------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~------~~~~~~i~~~~~P~~~ 73 (103)
T cd02982 11 SGKPLLVLFYNK--------DDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---R------HLEYFGLKEEDLPVIA 73 (103)
T ss_pred cCCCEEEEEEcC--------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---H------HHHHcCCChhhCCEEE
Confidence 368999999997 9999999999999999999888999999998855 2 67789999 999999
Q ss_pred EEeC--CeEeEEecCcchhcHHHHHHhhhc
Q 032841 104 RWEN--DIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 104 ~~~~--g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++++ |+...+..+ ....+.|.+||++
T Consensus 74 ~~~~~~~~k~~~~~~--~~~~~~l~~fi~~ 101 (103)
T cd02982 74 IINLSDGKKYLMPEE--ELTAESLEEFVED 101 (103)
T ss_pred EEecccccccCCCcc--ccCHHHHHHHHHh
Confidence 9998 544332222 2466788888864
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.54 E-value=4.6e-14 Score=111.01 Aligned_cols=96 Identities=19% Similarity=0.336 Sum_probs=74.9
Q ss_pred cccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC---CcEEEEEEeCCCcCccCCC
Q 032841 9 TVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD---DIALLQAYVGDRPTWRNPQ 85 (132)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~ 85 (132)
...+|++.+. ++++.++|+|||+ ||++|+.+.|.++++++.+.+ ++.++.+|++.+.
T Consensus 352 ~~~~f~~~v~------~~~~~vlv~f~a~--------wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------ 411 (462)
T TIGR01130 352 VGKNFDEIVL------DETKDVLVEFYAP--------WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------ 411 (462)
T ss_pred eCcCHHHHhc------cCCCeEEEEEECC--------CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------
Confidence 3446666532 3689999999997 999999999999999998875 6899999987654
Q ss_pred CCccccccccccccceEEEEeCCeEe--EEecCcchhcHHHHHHhhhc
Q 032841 86 HPFRVNSRFKLTGVPTLFRWENDIVS--GRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 86 ~~~~~~~~~~v~~vPt~~~~~~g~~~--~~~~~~~~~~~~~l~~~l~~ 131 (132)
... ++|+++||+++|.+|+.. .++.|. ...+.|.+||++
T Consensus 412 ----~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~--~~~~~l~~~l~~ 452 (462)
T TIGR01130 412 ----VPP-FEVEGFPTIKFVPAGKKSEPVPYDGD--RTLEDFSKFIAK 452 (462)
T ss_pred ----cCC-CCccccCEEEEEeCCCCcCceEecCc--CCHHHHHHHHHh
Confidence 334 999999999999988653 345553 456678888864
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.53 E-value=5.2e-14 Score=101.78 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=58.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC--CCcCccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG--DRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
++.. ++.|+++ ++||||+|+.+.|.+++++++++ ++.+..++++ +.+ + ++.+|+|+++||++
T Consensus 19 ~~~~-i~~f~~~-----~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~---~------l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 19 NPVE-IVVFTDN-----DKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDK---E------EAEKYGVERVPTTI 82 (215)
T ss_pred CCeE-EEEEcCC-----CCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccH---H------HHHHcCCCccCEEE
Confidence 4444 5567772 23499999999999999999886 4554445544 443 2 78899999999999
Q ss_pred EEeCCeEeE-EecCc
Q 032841 104 RWENDIVSG-RLEDH 117 (132)
Q Consensus 104 ~~~~g~~~~-~~~~~ 117 (132)
+|++|+.+. ++.|.
T Consensus 83 ~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 83 ILEEGKDGGIRYTGI 97 (215)
T ss_pred EEeCCeeeEEEEeec
Confidence 999999874 88886
No 66
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.52 E-value=4.2e-14 Score=96.67 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=59.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--------CCcEEEEEEeCCCcC-c----cCCC-----CC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--------DDIALLQAYVGDRPT-W----RNPQ-----HP 87 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--------~~~~~~~v~~~~~~~-~----~~~~-----~~ 87 (132)
++++++|+|||+ |||+|+++.|.|.++++++. .++.++.|+.+...+ + +... -+
T Consensus 24 kgk~vlL~FwAs--------WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 24 ENRVLLLFFGAV--------VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred CCCEEEEEEECC--------CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 689999999998 99999999999999877543 258999999876431 1 0000 01
Q ss_pred c------cccccccccccceEEEEeC-CeEeEE
Q 032841 88 F------RVNSRFKLTGVPTLFRWEN-DIVSGR 113 (132)
Q Consensus 88 ~------~~~~~~~v~~vPt~~~~~~-g~~~~~ 113 (132)
+ .++..|++.++||+++++. |+.+.+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 1 2567899999999999984 665543
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.52 E-value=5.3e-14 Score=86.45 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=59.7
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
+..||++ ||++|+.+.|.+++++++++..+.++.||+++.. + ++.+|+++++||+++ +|+
T Consensus 3 v~~f~~~--------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~------~~~~~~v~~vPt~~~--~g~- 62 (82)
T TIGR00411 3 IELFTSP--------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---Q------KAMEYGIMAVPAIVI--NGD- 62 (82)
T ss_pred EEEEECC--------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---H------HHHHcCCccCCEEEE--CCE-
Confidence 5678886 9999999999999999888767899999987655 2 667899999999986 665
Q ss_pred eEEecCcchhcHHHHHHhhh
Q 032841 111 SGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l~ 130 (132)
.++.|. ...+.+.++|.
T Consensus 63 -~~~~G~--~~~~~l~~~l~ 79 (82)
T TIGR00411 63 -VEFIGA--PTKEELVEAIK 79 (82)
T ss_pred -EEEecC--CCHHHHHHHHH
Confidence 356664 23445666654
No 68
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.51 E-value=5.4e-14 Score=114.42 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=73.8
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHH---HHHHHhCCCCcEEEEEEeCCCcCccCCCC
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVI---YKTLEASPDDIALLQAYVGDRPTWRNPQH 86 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 86 (132)
+.+.+++.+.+.++..++|+++|+|||+ ||++|+.++|.+ .++.++++ ++.++++|++++.. .
T Consensus 457 i~s~~~l~~~l~~a~~~gK~VlVdF~A~--------WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~----~- 522 (571)
T PRK00293 457 IKTVAELDQALAEAKGKGKPVMLDLYAD--------WCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNA----E- 522 (571)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEEEECC--------cCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCCh----h-
Confidence 3455555343333334689999999998 999999999875 56666665 68999999976431 0
Q ss_pred CccccccccccccceEEEEe-CCeEe--EEecCcchhcHHHHHHhhh
Q 032841 87 PFRVNSRFKLTGVPTLFRWE-NDIVS--GRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 87 ~~~~~~~~~v~~vPt~~~~~-~g~~~--~~~~~~~~~~~~~l~~~l~ 130 (132)
.-.++++|++.++||+++|+ +|+++ .|+.|.. +.+.+.++++
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~--~~~~f~~~L~ 567 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFM--DAAAFAAHLR 567 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCCCcccccccCCC--CHHHHHHHHH
Confidence 01156789999999999997 67763 5677752 3445666654
No 69
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.50 E-value=1e-13 Score=92.95 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=58.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC---CcEEEEEEeCCCc-----------CccCCC-CC---
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD---DIALLQAYVGDRP-----------TWRNPQ-HP--- 87 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~---~~~~~~v~~~~~~-----------~~~~~~-~~--- 87 (132)
.|++++|+|||+ ||++|+.+.|.++++++++.+ ++.++.|+++... .|.... ..
T Consensus 16 ~Gk~vll~F~at--------wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 16 EGKTVGLYFSAS--------WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred CCCEEEEEEECC--------CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 689999999998 999999999999999887753 5788888887643 111100 00
Q ss_pred -ccccccccccccceEEEEe-CCeEeEE
Q 032841 88 -FRVNSRFKLTGVPTLFRWE-NDIVSGR 113 (132)
Q Consensus 88 -~~~~~~~~v~~vPt~~~~~-~g~~~~~ 113 (132)
-.++..|+|.++||+++++ +|+.+.+
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEch
Confidence 0134569999999999998 5665543
No 70
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.9e-14 Score=110.45 Aligned_cols=100 Identities=18% Similarity=0.395 Sum_probs=74.9
Q ss_pred CCccccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCc
Q 032841 2 PLNLSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRP 79 (132)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~ 79 (132)
|+.+++. .+|++.+. ++++-++|.|||+ ||++|+++.|+++++++++. .++.+.++|...+.
T Consensus 367 pVkvvVg--knfd~iv~------de~KdVLvEfyAP--------WCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd 430 (493)
T KOG0190|consen 367 PVKVVVG--KNFDDIVL------DEGKDVLVEFYAP--------WCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND 430 (493)
T ss_pred CeEEEee--cCHHHHhh------ccccceEEEEcCc--------ccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc
Confidence 3444444 48888743 5889999999996 99999999999999999986 47899999987765
Q ss_pred CccCCCCCccccccccccccceEEEEeCCeEeE--EecCcchhcHHHHHHhhh
Q 032841 80 TWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSG--RLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~--~~~~~~~~~~~~l~~~l~ 130 (132)
+ ....+.++||++++..|.... .+.|. ..-+.+..|+.
T Consensus 431 ----------~-~~~~~~~fPTI~~~pag~k~~pv~y~g~--R~le~~~~fi~ 470 (493)
T KOG0190|consen 431 ----------V-PSLKVDGFPTILFFPAGHKSNPVIYNGD--RTLEDLKKFIK 470 (493)
T ss_pred ----------C-ccccccccceEEEecCCCCCCCcccCCC--cchHHHHhhhc
Confidence 2 357888899999999876432 33333 33445666665
No 71
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.49 E-value=1.8e-13 Score=96.85 Aligned_cols=94 Identities=21% Similarity=0.420 Sum_probs=65.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcC----c-cCCCCCc---------ccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPT----W-RNPQHPF---------RVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~~~~~---------~~~ 91 (132)
.+++++|+|||+ ||++|++..|.+.++.++ ++.++.|+.++..+ | ++...+| .+.
T Consensus 67 ~gk~vvv~Fwat--------wC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 135 (185)
T PRK15412 67 QGKPVLLNVWAT--------WCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG 135 (185)
T ss_pred CCCEEEEEEECC--------CCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH
Confidence 689999999998 999999999999998652 58889998765321 1 0111111 133
Q ss_pred ccccccccceEEEEe-CCeEeEEecCcc--hhcHHHHHHhhh
Q 032841 92 SRFKLTGVPTLFRWE-NDIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~-~g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
..|+|.++|+.++++ +|+...+..|.. ...++.|+.+++
T Consensus 136 ~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 136 LDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred HhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 579999999888886 688787887752 233445555543
No 72
>PHA02125 thioredoxin-like protein
Probab=99.49 E-value=1.3e-13 Score=84.10 Aligned_cols=72 Identities=19% Similarity=0.441 Sum_probs=54.3
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
+++|||+ ||++|+.+.|.+.++. +.++.||.+... + ++.+|+|+++||++ +|+.
T Consensus 2 iv~f~a~--------wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~------l~~~~~v~~~PT~~---~g~~ 55 (75)
T PHA02125 2 IYLFGAE--------WCANCKMVKPMLANVE------YTYVDVDTDEGV---E------LTAKHHIRSLPTLV---NTST 55 (75)
T ss_pred EEEEECC--------CCHhHHHHHHHHHHHh------heEEeeeCCCCH---H------HHHHcCCceeCeEE---CCEE
Confidence 6899997 9999999999997652 457777776644 2 67899999999997 6787
Q ss_pred eEEecCcchhcHHHHHHhh
Q 032841 111 SGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l 129 (132)
++++.|.... ...|++-|
T Consensus 56 ~~~~~G~~~~-~~~l~~~~ 73 (75)
T PHA02125 56 LDRFTGVPRN-VAELKEKL 73 (75)
T ss_pred EEEEeCCCCc-HHHHHHHh
Confidence 8888886332 34455443
No 73
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.48 E-value=1.2e-13 Score=92.12 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=58.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcC-ccC-----C--CCC-------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPT-WRN-----P--QHP------- 87 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~-----~--~~~------- 87 (132)
.+++++|+||++ ||++|+.+.|.+.++.+++. .++.++.|+++...+ |+. + .-+
T Consensus 17 ~gk~vll~Fwa~--------wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 17 EGKTVGLYFSAS--------WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred CCcEEEEEEECC--------CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 678999999998 99999999999999887764 257788888875431 100 0 000
Q ss_pred ccccccccccccceEEEEe-CCeEeEE
Q 032841 88 FRVNSRFKLTGVPTLFRWE-NDIVSGR 113 (132)
Q Consensus 88 ~~~~~~~~v~~vPt~~~~~-~g~~~~~ 113 (132)
-.+++.|+|.++||+++++ +|+.+.+
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEcc
Confidence 1245689999999999998 5765544
No 74
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.48 E-value=9.5e-14 Score=87.69 Aligned_cols=74 Identities=23% Similarity=0.648 Sum_probs=56.2
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCc-CccC----CCCCc-----------
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRP-TWRN----PQHPF----------- 88 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~-~~~~----~~~~~----------- 88 (132)
||+++|+|||+ ||++|++..|.+.++.++++ +++.++.|+.++.. +|++ ...++
T Consensus 1 gK~~ll~fwa~--------~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWAS--------WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-T--------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECC--------CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 68999999998 99999999999999999988 78999999998642 2221 10111
Q ss_pred cccccccccccceEEEEeCC
Q 032841 89 RVNSRFKLTGVPTLFRWEND 108 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~g 108 (132)
.+.+.|+|.++|++++++..
T Consensus 73 ~l~~~~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPD 92 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETT
T ss_pred HHHHHCCCCcCCEEEEECCC
Confidence 24568999999999999864
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.48 E-value=1.3e-13 Score=84.35 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=55.4
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS 111 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~ 111 (132)
|.|||+ |||+|+.+.|.++++.++++..+.++.+| +.. .+.+|++.++||+++ +|+.+
T Consensus 3 i~~~a~--------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~----------~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 3 IQIYGT--------GCANCQMTEKNVKKAVEELGIDAEFEKVT--DMN----------EILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEECC--------CCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHH----------HHHHcCCCcCCEEEE--CCEEE
Confidence 789997 99999999999999999998677887776 222 345799999999999 77765
Q ss_pred EEecCcchhcHHHHHHhh
Q 032841 112 GRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 112 ~~~~~~~~~~~~~l~~~l 129 (132)
+.|.. ...+.|+++|
T Consensus 61 --~~G~~-~~~~~l~~~l 75 (76)
T TIGR00412 61 --IMGKI-PSKEEIKEIL 75 (76)
T ss_pred --EEecc-CCHHHHHHHh
Confidence 44432 2334666665
No 76
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.47 E-value=1.9e-13 Score=91.07 Aligned_cols=81 Identities=11% Similarity=-0.033 Sum_probs=55.4
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHH-HH--HHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccce
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPV-IY--KTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPT 101 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt 101 (132)
.++|+|+|+|+|+ ||++|+.+.+. +. ++.+.+.+++.++.+|+++.++.......+ ....|++.|+||
T Consensus 13 ~~~KpVll~f~a~--------WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~-~~~~~~~~G~Pt 83 (124)
T cd02955 13 REDKPIFLSIGYS--------TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNA-AQAMTGQGGWPL 83 (124)
T ss_pred HcCCeEEEEEccC--------CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHH-HHHhcCCCCCCE
Confidence 4899999999998 99999999873 22 355555557889999987754211000000 011468999999
Q ss_pred EEEEeC-CeEeEEe
Q 032841 102 LFRWEN-DIVSGRL 114 (132)
Q Consensus 102 ~~~~~~-g~~~~~~ 114 (132)
+++++. |+.+.+.
T Consensus 84 ~vfl~~~G~~~~~~ 97 (124)
T cd02955 84 NVFLTPDLKPFFGG 97 (124)
T ss_pred EEEECCCCCEEeee
Confidence 999985 7776443
No 77
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=108.53 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---------Ccc-C---------CC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---------TWR-N---------PQ 85 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---------~~~-~---------~~ 85 (132)
++++++|+|||+ ||++|+.+.|.|+++.+++. +++.++.|.++... .|. + .+
T Consensus 55 kGKpVvV~FWAT--------WCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D 126 (521)
T PRK14018 55 KDKPTLIKFWAS--------WCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTD 126 (521)
T ss_pred CCCEEEEEEEcC--------CCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecc
Confidence 789999999998 99999999999999999886 56888888753110 010 0 00
Q ss_pred CCccccccccccccceEEEEe-CCeEeEEecCcchhcHHHHHHhhh
Q 032841 86 HPFRVNSRFKLTGVPTLFRWE-NDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 86 ~~~~~~~~~~v~~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
..-.++..|+|.++||+++++ +|+.+.++.|.- ..+.|+++|+
T Consensus 127 ~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~--~~eeL~a~Ie 170 (521)
T PRK14018 127 NGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSI--SEAQALALIR 170 (521)
T ss_pred ccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCC--CHHHHHHHHH
Confidence 111356789999999997775 688888888863 4567777776
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=4.3e-14 Score=91.74 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=63.3
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHH---HHhCCCCcEEEEEEeCCCc----CccCCCCC-------ccc
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKT---LEASPDDIALLQAYVGDRP----TWRNPQHP-------FRV 90 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~---~~~~~~~~~~~~v~~~~~~----~~~~~~~~-------~~~ 90 (132)
.++++++++|+++ |||+|+++.+.+... ...+..++.++.++++... .|.+..+. -.+
T Consensus 3 ~~~k~~v~~F~~~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (112)
T PF13098_consen 3 GNGKPIVVVFTDP--------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKEL 74 (112)
T ss_dssp TTSSEEEEEEE-T--------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHH
T ss_pred CCCCEEEEEEECC--------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHH
Confidence 4789999999986 999999999999863 3344456888999987533 11111111 125
Q ss_pred cccccccccceEEEEe-CCeEeEEecCcchhcHHHHHHhh
Q 032841 91 NSRFKLTGVPTLFRWE-NDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+..|+|.++||+++++ +|+.+.++.|.- ..+.+.++|
T Consensus 75 ~~~~~v~gtPt~~~~d~~G~~v~~~~G~~--~~~~l~~~L 112 (112)
T PF13098_consen 75 AQRYGVNGTPTIVFLDKDGKIVYRIPGYL--SPEELLKML 112 (112)
T ss_dssp HHHTT--SSSEEEECTTTSCEEEEEESS----HHHHHHHH
T ss_pred HHHcCCCccCEEEEEcCCCCEEEEecCCC--CHHHHHhhC
Confidence 6789999999999997 688888888874 334555543
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.45 E-value=2.9e-13 Score=101.09 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=59.3
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcC--ccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPT--WRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
.+++++|+|||+ ||++|+.+.|.|+++.++++ +.++.|+++.... +......-.++.+|||+++||++
T Consensus 165 ~~k~~Lv~F~As--------wCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 165 AKKSGLFFFFKS--------DCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred cCCeEEEEEECC--------CCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 578999999998 99999999999999999985 7777888766431 11100001156789999999999
Q ss_pred EEeC-CeEeEEe
Q 032841 104 RWEN-DIVSGRL 114 (132)
Q Consensus 104 ~~~~-g~~~~~~ 114 (132)
++++ |+.+..+
T Consensus 235 Lv~~~~~~v~~v 246 (271)
T TIGR02740 235 LADPDPNQFTPI 246 (271)
T ss_pred EEECCCCEEEEE
Confidence 9986 6655443
No 80
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.44 E-value=8.8e-13 Score=90.88 Aligned_cols=92 Identities=14% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCC-CCccc-cccc---cccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQ-HPFRV-NSRF---KLTG 98 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~-~~~~~-~~~~---~v~~ 98 (132)
.++..+|+|||+ |||+|+++.|.++++.++++ +.++.|+++... .+...- ..... ...| ++.+
T Consensus 49 l~~~~lvnFWAs--------WCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~ 118 (153)
T TIGR02738 49 QDDYALVFFYQS--------TCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV 118 (153)
T ss_pred cCCCEEEEEECC--------CChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC
Confidence 356679999998 99999999999999999884 667777876532 111000 00011 1234 8899
Q ss_pred cceEEEEeC-CeE-eEEecCcchhcHHHHHHhh
Q 032841 99 VPTLFRWEN-DIV-SGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 99 vPt~~~~~~-g~~-~~~~~~~~~~~~~~l~~~l 129 (132)
+||+++++. |+. ..+..|. .+++.+++.|
T Consensus 119 iPTt~LID~~G~~i~~~~~G~--~s~~~l~~~I 149 (153)
T TIGR02738 119 TPATFLVNVNTRKAYPVLQGA--VDEAELANRM 149 (153)
T ss_pred CCeEEEEeCCCCEEEEEeecc--cCHHHHHHHH
Confidence 999999975 554 4455664 2333444444
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.42 E-value=2e-12 Score=90.51 Aligned_cols=93 Identities=14% Similarity=0.309 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc-C---c-cCC---------CCCcccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP-T---W-RNP---------QHPFRVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~-~---~-~~~---------~~~~~~~ 91 (132)
.+++++|+||++ |||+|+++.|.++++.++ ++.++.|+.++.. . | ++. +...+++
T Consensus 62 ~gk~vll~F~a~--------wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~ 130 (173)
T TIGR00385 62 QGKPVLLNVWAS--------WCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG 130 (173)
T ss_pred CCCEEEEEEECC--------cCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH
Confidence 689999999998 999999999999998753 5888889875432 0 1 000 0111245
Q ss_pred ccccccccceEEEEe-CCeEeEEecCcc--hhcHHHHHHhh
Q 032841 92 SRFKLTGVPTLFRWE-NDIVSGRLEDHE--AHLEHKIKALL 129 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~-~g~~~~~~~~~~--~~~~~~l~~~l 129 (132)
..|++.++|+.++++ +|+.+.+..|.. ...++.|++++
T Consensus 131 ~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 131 LDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred HhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 689999999877775 688888887752 22244455544
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.42 E-value=2.2e-12 Score=85.54 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc-Ccc----CCC---------CCcccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP-TWR----NPQ---------HPFRVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~~---------~~~~~~ 91 (132)
.+++++|+|||+ |||+|+.+.|.++++.+++ ++.++.|+.+... .++ ... ...+++
T Consensus 24 ~gk~vvv~F~a~--------~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 24 KGKPYLLNVWAS--------WCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred CCCEEEEEEEcC--------cCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 588999999998 9999999999999998776 3888888865321 000 000 111245
Q ss_pred ccccccccceEEEEe-CCeEeEEecCc
Q 032841 92 SRFKLTGVPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~-~g~~~~~~~~~ 117 (132)
..|++.++|+.++++ +|+.+.++.|.
T Consensus 94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 94 IDLGVYGVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred HhcCCCCCCeEEEECCCceEEEEEecc
Confidence 679999999777776 78888888775
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.37 E-value=4.6e-12 Score=87.94 Aligned_cols=95 Identities=17% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeCCCc-Ccc----CC--------CCCcccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVGDRP-TWR----NP--------QHPFRVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~~~~-~~~----~~--------~~~~~~~ 91 (132)
.+++++|+||++ ||++|+...|.+.++.+++.+ ++.++.|+.+... .|+ .. .....+.
T Consensus 60 ~~k~~~l~f~a~--------~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 131 (173)
T PRK03147 60 KGKGVFLNFWGT--------WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI 131 (173)
T ss_pred CCCEEEEEEECC--------cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH
Confidence 578999999997 999999999999999998863 5889999887542 110 00 0111245
Q ss_pred ccccccccceEEEEe-CCeEeEEecCcchhcHHHHHHhhh
Q 032841 92 SRFKLTGVPTLFRWE-NDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
+.|++.++|++++++ +|+.+....|.. ..+.+.++++
T Consensus 132 ~~~~v~~~P~~~lid~~g~i~~~~~g~~--~~~~l~~~l~ 169 (173)
T PRK03147 132 DAYGVGPLPTTFLIDKDGKVVKVITGEM--TEEQLEEYLE 169 (173)
T ss_pred HHcCCCCcCeEEEECCCCcEEEEEeCCC--CHHHHHHHHH
Confidence 789999999999997 566666666643 3455666665
No 84
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.36 E-value=6.9e-12 Score=80.11 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=62.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC--cCccC------C------CCCccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR--PTWRN------P------QHPFRV 90 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~--~~~~~------~------~~~~~~ 90 (132)
.+++++|+||++ ||++|+...+.+.++.+++. .++.++.|+++.. ..|+. . ...-.+
T Consensus 18 ~~k~~ll~f~~~--------~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (116)
T cd02966 18 KGKVVLVNFWAS--------WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGEL 89 (116)
T ss_pred CCCEEEEEeecc--------cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchH
Confidence 478999999998 99999999999999998885 4799999999874 11110 0 001125
Q ss_pred cccccccccceEEEEe-CCeEeEEecC
Q 032841 91 NSRFKLTGVPTLFRWE-NDIVSGRLED 116 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~-~g~~~~~~~~ 116 (132)
+..|++.++|++++++ +|+.+.++.|
T Consensus 90 ~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 90 AKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HHhcCcCccceEEEECCCCcEEEEecC
Confidence 6789999999999997 5766666543
No 85
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.36 E-value=1.4e-12 Score=88.36 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=70.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCc----cCCC--------CCccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTW----RNPQ--------HPFRVNS 92 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~----~~~~--------~~~~~~~ 92 (132)
.+++++|.||++ .|||+|+...|.+.++.+.+. .++.++.|..+..... +... ....+.+
T Consensus 27 ~gk~~vv~f~~~-------~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 27 KGKPVVVNFWAS-------AWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp TTSEEEEEEEST-------TTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred CCCeEEEEEEcc-------CCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 689999999995 499999999999999988754 5699999998765411 1111 1123456
Q ss_pred ccccc---------ccceEEEEe-CCeEeEEecCcchhcHHHHHHh
Q 032841 93 RFKLT---------GVPTLFRWE-NDIVSGRLEDHEAHLEHKIKAL 128 (132)
Q Consensus 93 ~~~v~---------~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~ 128 (132)
.|++. ++|++++++ +|+.+.+..|.....++.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 100 ALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp HTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred HhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 89988 999998887 5888888777755235556554
No 86
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.35 E-value=5.2e-12 Score=84.62 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=57.1
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHH---HHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYK---TLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
+|++.++... .++|+++|+|+++ ||++|+++...+-. +.+...+++..+.++.+... ++
T Consensus 11 ~~eeal~~Ak---~~~Kpvmv~f~sd--------wC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td--~~----- 72 (130)
T cd02960 11 TYEEGLYKAK---KSNKPLMVIHHLE--------DCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD--KN----- 72 (130)
T ss_pred hHHHHHHHHH---HCCCeEEEEEeCC--------cCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC--CC-----
Confidence 5666555444 4899999999998 99999999986543 33333345566667665332 01
Q ss_pred cccccccccccceEEEEe-CCeEeEEecCc
Q 032841 89 RVNSRFKLTGVPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~-~g~~~~~~~~~ 117 (132)
.. ..+ .++||+++++ +|+.+.++.|.
T Consensus 73 -~~-~~g-~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 73 -LS-PDG-QYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred -cC-ccC-cccCeEEEECCCCCCccccccc
Confidence 11 133 6899999997 47777788775
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.34 E-value=6.3e-12 Score=90.88 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=61.4
Q ss_pred eEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCC
Q 032841 29 ANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEND 108 (132)
Q Consensus 29 ~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g 108 (132)
..++.||++ |||+|+.+.|.++++..+++ ++.+..+|.+..+ + ++.+|+|.++||++++++|
T Consensus 135 v~I~~F~a~--------~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~---~------~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 135 VRIEVFVTP--------TCPYCPYAVLMAHKFALAND-KILGEMIEANENP---D------LAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred cEEEEEECC--------CCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCH---H------HHHHhCCccCCEEEEecCC
Confidence 344558997 99999999999999988764 7888899988765 3 6779999999999999877
Q ss_pred eEeEEecCcchhcHHHHHHhhh
Q 032841 109 IVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
.. +.|.. .++.+..+|.
T Consensus 197 ~~---~~G~~--~~~~l~~~l~ 213 (215)
T TIGR02187 197 EE---FVGAY--PEEQFLEYIL 213 (215)
T ss_pred EE---EECCC--CHHHHHHHHH
Confidence 52 55642 3456666664
No 88
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.34 E-value=1.4e-12 Score=84.80 Aligned_cols=79 Identities=18% Similarity=0.428 Sum_probs=55.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccC-------CCCC----ccccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRN-------PQHP----FRVNSRF 94 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~----~~~~~~~ 94 (132)
++++++|+||++ ||++|+.+.|.++++.+.+.+++.++.+.-++..+++. ...+ -.+...|
T Consensus 20 ~gk~vvl~F~~~--------wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 91 (114)
T cd02967 20 PGRPTLLFFLSP--------TCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAY 91 (114)
T ss_pred CCCeEEEEEECC--------CCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhc
Confidence 478999999998 99999999999999988776667777663222111110 0011 1234689
Q ss_pred cccccceEEEEeC-CeEeE
Q 032841 95 KLTGVPTLFRWEN-DIVSG 112 (132)
Q Consensus 95 ~v~~vPt~~~~~~-g~~~~ 112 (132)
++.++|+.+++++ |+.+.
T Consensus 92 ~~~~~P~~~vid~~G~v~~ 110 (114)
T cd02967 92 QVSKLPYAVLLDEAGVIAA 110 (114)
T ss_pred CCCCcCeEEEECCCCeEEe
Confidence 9999999999985 65443
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=6e-12 Score=108.46 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=63.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC-CcEEEEEEeC---CCc---CccC---------C---CC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD-DIALLQAYVG---DRP---TWRN---------P---QH 86 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~-~~~~~~v~~~---~~~---~~~~---------~---~~ 86 (132)
.+++++|+|||+ ||++|+.+.|.|+++.+++++ ++.++.|... ... .|+. | ..
T Consensus 419 kGK~vll~FWAs--------WC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~ 490 (1057)
T PLN02919 419 KGKVVILDFWTY--------CCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDG 490 (1057)
T ss_pred CCCEEEEEEECC--------cChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECC
Confidence 689999999998 999999999999999999873 4777777532 211 1100 0 00
Q ss_pred CccccccccccccceEEEEe-CCeEeEEecCc
Q 032841 87 PFRVNSRFKLTGVPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 87 ~~~~~~~~~v~~vPt~~~~~-~g~~~~~~~~~ 117 (132)
.-.+..+|+|.++||+++++ +|+.+.++.|.
T Consensus 491 ~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 491 DMYLWRELGVSSWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred chHHHHhcCCCccceEEEECCCCeEEEEEecc
Confidence 11245689999999999995 79999998885
No 90
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.33 E-value=7.7e-12 Score=83.08 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=62.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC-----c----Cc-cCCCCCc------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR-----P----TW-RNPQHPF------ 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~-----~----~~-~~~~~~~------ 88 (132)
.+++++|+|||+ ||++|++..|.++++.+++. .++.++.|+.+.. . .| ++-+..|
T Consensus 22 ~gk~vvl~F~a~--------~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~ 93 (126)
T cd03012 22 RGKVVLLDFWTY--------CCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDN 93 (126)
T ss_pred CCCEEEEEEECC--------CCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECC
Confidence 579999999998 99999999999999999987 4688888865321 1 00 0101111
Q ss_pred --cccccccccccceEEEEe-CCeEeEEecCc
Q 032841 89 --RVNSRFKLTGVPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 89 --~~~~~~~v~~vPt~~~~~-~g~~~~~~~~~ 117 (132)
.+...|++.++|+.++++ +|+.+.+..|.
T Consensus 94 ~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 94 DYATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred chHHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 234569999999999997 58777777664
No 91
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.32 E-value=3.1e-12 Score=75.96 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=47.4
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++.|+++ |||+|+++.+.++++.+.++ ++.+..+|+++.+ + ++.+|++.++||+++
T Consensus 3 v~~f~~~--------~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~---~------l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSP--------TCPYCPDAVQAANRIAALNP-NISAEMIDAAEFP---D------LADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECC--------CCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCH---h------HHHHcCCcccCEEEE
Confidence 5678887 99999999999999977654 7999999987754 2 667899999999866
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.31 E-value=2.4e-11 Score=79.95 Aligned_cols=78 Identities=14% Similarity=0.318 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCC--cC-----------cc---CCCCCcc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDR--PT-----------WR---NPQHPFR 89 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~--~~-----------~~---~~~~~~~ 89 (132)
.+++++|+||++ ||++|+.+.|.+.++.+++ .++.|..+.. .. |. +++ -.
T Consensus 19 ~~k~~vl~F~~~--------~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~ 84 (123)
T cd03011 19 SGKPVLVYFWAT--------WCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDPD--GV 84 (123)
T ss_pred CCCEEEEEEECC--------cChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECCC--cH
Confidence 568999999998 9999999999999998763 3444544332 10 00 111 12
Q ss_pred ccccccccccceEEEEeCCeEeEEecCc
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
+++.|+|.++||++++++|+...+..|.
T Consensus 85 ~~~~~~i~~~P~~~vid~~gi~~~~~g~ 112 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGGIVFVTTGV 112 (123)
T ss_pred HHHhCCCCcccEEEEEcCCCeEEEEecc
Confidence 5678999999999999876666666664
No 93
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.27 E-value=2.1e-11 Score=79.83 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=64.4
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHH-HHH--HHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPV-IYK--TLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
+|++..+...+ ++|+++|+|+++ ||++|+.+... +.. +.+.+..+..++.+|+++.. . .
T Consensus 5 s~~~a~~~Ak~---~~K~llv~~~~~--------~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e---~----~ 66 (114)
T cd02958 5 SFEDAKQEAKS---EKKWLLVYLQSE--------DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE---G----Q 66 (114)
T ss_pred CHHHHHHHHHh---hCceEEEEEecC--------CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc---H----H
Confidence 56666554443 799999999998 99999998753 322 33334446777888876522 1 1
Q ss_pred cccccccccccceEEEEeC--CeEeEEecCcc
Q 032841 89 RVNSRFKLTGVPTLFRWEN--DIVSGRLEDHE 118 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~--g~~~~~~~~~~ 118 (132)
.++..|++.++|++++++. |+.+.++.|..
T Consensus 67 ~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~ 98 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNI 98 (114)
T ss_pred HHHHHhCccCCCeEEEEeCccCcEeEEEcCCC
Confidence 2667899999999999984 88888888873
No 94
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.27 E-value=4.6e-12 Score=78.40 Aligned_cols=75 Identities=27% Similarity=0.524 Sum_probs=53.5
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHH---HHHHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVI---YKTLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
++++.+.+..+ ++++++|+|+|+ ||++|+.+...+ .++.+.+.+++.++.+|.+... .
T Consensus 5 d~~~al~~A~~---~~kpvlv~f~a~--------wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~----- 65 (82)
T PF13899_consen 5 DYEEALAEAKK---EGKPVLVDFGAD--------WCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---P----- 65 (82)
T ss_dssp SHHHHHHHHHH---HTSEEEEEEETT--------TTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---H-----
T ss_pred hHHHHHHHHHH---cCCCEEEEEECC--------CCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---h-----
Confidence 46666554444 899999999998 999999999876 2343334468899999986644 1
Q ss_pred cccccccccccceEEEEeC
Q 032841 89 RVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~ 107 (132)
. ..+...++|++++++.
T Consensus 66 -~-~~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 66 -N-AQFDRQGYPTFFFLDP 82 (82)
T ss_dssp -H-HHHHHCSSSEEEEEET
T ss_pred -h-HHhCCccCCEEEEeCC
Confidence 1 1233377999999863
No 95
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.25 E-value=6.4e-11 Score=79.48 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
.+...+|.| ++ |+. -+|-+....=++.+++++++ .++.+++||++.++ . ++.+|||.++||+++
T Consensus 33 ~~~~~vl~~-~g-dp~----r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~------LA~~fgV~siPTLl~ 97 (132)
T PRK11509 33 QAPDGVVLL-SS-DPK----RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---A------IGDRFGVFRFPATLV 97 (132)
T ss_pred CCCcEEEEe-CC-CCC----cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---H------HHHHcCCccCCEEEE
Confidence 344444444 43 343 57888888888999999987 45999999999876 3 889999999999999
Q ss_pred EeCCeEeEEecCcc--hhcHHHHHHhhh
Q 032841 105 WENDIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 105 ~~~g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
|++|+.++++.|.. ....+.|+++++
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 99999999999973 234455555543
No 96
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.24 E-value=9e-12 Score=93.11 Aligned_cols=86 Identities=16% Similarity=0.345 Sum_probs=69.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHh----CC-CCcEEEEEEeCCCcCccCCCCCccccccccccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEA----SP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVP 100 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vP 100 (132)
+...++|.|||+ ||+..+.+.|++++++++ ++ +++.+..||++... + ++.+|.|..+|
T Consensus 12 s~elvfv~FyAd--------WCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~---~------ia~ky~I~KyP 74 (375)
T KOG0912|consen 12 SNELVFVNFYAD--------WCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED---D------IADKYHINKYP 74 (375)
T ss_pred cceEEeeeeehh--------hchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh---H------HhhhhccccCc
Confidence 688999999998 999999999999997764 45 67899999998866 3 78899999999
Q ss_pred eEEEEeCCeEeEE-ecCcchhcHHHHHHhhh
Q 032841 101 TLFRWENDIVSGR-LEDHEAHLEHKIKALLS 130 (132)
Q Consensus 101 t~~~~~~g~~~~~-~~~~~~~~~~~l~~~l~ 130 (132)
|+-++++|....| +.|. ...+.|-+||+
T Consensus 75 TlKvfrnG~~~~rEYRg~--RsVeaL~efi~ 103 (375)
T KOG0912|consen 75 TLKVFRNGEMMKREYRGQ--RSVEALIEFIE 103 (375)
T ss_pred eeeeeeccchhhhhhccc--hhHHHHHHHHH
Confidence 9999999987553 3333 23445556655
No 97
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.24 E-value=1.8e-11 Score=91.71 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCccCCCCCccccccccccccceE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTL 102 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~ 102 (132)
.+..++|.|||+ ||++|+++.|++.++..+++ ..+++.++|....+ . ++.+|+|+|+||+
T Consensus 42 dddiW~VdFYAP--------WC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~---a------iAnefgiqGYPTI 104 (468)
T KOG4277|consen 42 DDDIWFVDFYAP--------WCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP---A------IANEFGIQGYPTI 104 (468)
T ss_pred cCCeEEEEeech--------hhhhcccccchhHHhCcchhhcCCceeecccccccch---h------hHhhhccCCCceE
Confidence 567999999996 99999999999999876554 46889999988876 3 7889999999999
Q ss_pred EEEeCCeEeE
Q 032841 103 FRWENDIVSG 112 (132)
Q Consensus 103 ~~~~~g~~~~ 112 (132)
.++++|-.+.
T Consensus 105 k~~kgd~a~d 114 (468)
T KOG4277|consen 105 KFFKGDHAID 114 (468)
T ss_pred EEecCCeeee
Confidence 9999876543
No 98
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.22 E-value=6.9e-11 Score=83.30 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=54.4
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCC----CCCccccccccc--cccceEEE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNP----QHPFRVNSRFKL--TGVPTLFR 104 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~v--~~vPt~~~ 104 (132)
+|.|||+ |||+|+++.|.++++.++++ +.++.|+++......=| ...-.+...|++ .++||.++
T Consensus 73 lV~Fwas--------wCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQG--------HCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEECC--------CCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 7789998 99999999999999999984 88888888754310000 011113346884 69999999
Q ss_pred EeC-CeEe-EEecCc
Q 032841 105 WEN-DIVS-GRLEDH 117 (132)
Q Consensus 105 ~~~-g~~~-~~~~~~ 117 (132)
++. |+.+ ....|.
T Consensus 143 Id~~G~i~~~~~~G~ 157 (181)
T PRK13728 143 VNVNTLEALPLLQGA 157 (181)
T ss_pred EeCCCcEEEEEEECC
Confidence 975 6554 346665
No 99
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.22 E-value=5.7e-11 Score=74.81 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=54.3
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+..-+..|+++ ||++|....+.++++.+.++ ++.+..+|+++.+ + ++.+|+|.++||+++
T Consensus 11 ~~pv~i~~F~~~--------~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~---e------~a~~~~V~~vPt~vi- 71 (89)
T cd03026 11 NGPINFETYVSL--------SCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQ---D------EVEERGIMSVPAIFL- 71 (89)
T ss_pred CCCEEEEEEECC--------CCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCH---H------HHHHcCCccCCEEEE-
Confidence 344456667775 99999999999999998876 7999999998765 2 677999999999975
Q ss_pred eCCeEeE
Q 032841 106 ENDIVSG 112 (132)
Q Consensus 106 ~~g~~~~ 112 (132)
+|+.+.
T Consensus 72 -dG~~~~ 77 (89)
T cd03026 72 -NGELFG 77 (89)
T ss_pred -CCEEEE
Confidence 776654
No 100
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.20 E-value=2.2e-11 Score=83.45 Aligned_cols=76 Identities=22% Similarity=0.549 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCC---cEEEEEEeCCCc------------CccCCCCCc--
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDD---IALLQAYVGDRP------------TWRNPQHPF-- 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~---~~~~~v~~~~~~------------~~~~~~~~~-- 88 (132)
.||.|.++|.|. ||||||.+-|.+.+++++..++ +.++.|+.|... .|.. -+|
T Consensus 32 ~gKvV~lyFsA~--------wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~--iPf~d 101 (157)
T KOG2501|consen 32 QGKVVGLYFSAH--------WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA--IPFGD 101 (157)
T ss_pred CCcEEEEEEEEE--------ECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE--ecCCC
Confidence 689999999999 9999999999999999887644 888888887644 1211 011
Q ss_pred ----cccccccccccceEEEEeC-CeEe
Q 032841 89 ----RVNSRFKLTGVPTLFRWEN-DIVS 111 (132)
Q Consensus 89 ----~~~~~~~v~~vPt~~~~~~-g~~~ 111 (132)
++..+|+|+++|++++++. |..+
T Consensus 102 ~~~~~l~~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 102 DLIQKLSEKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HHHHHHHHhcccCcCceeEEecCCCCEe
Confidence 2456899999999999975 5443
No 101
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.18 E-value=6.4e-11 Score=84.86 Aligned_cols=43 Identities=16% Similarity=0.041 Sum_probs=38.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~ 76 (132)
.|++++|.|||+ |||+|+...|.++++.+++. .++.++.|+++
T Consensus 38 kGkvvlv~fwAs--------wC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSAS--------KCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECC--------CCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 589999999998 99999999999999999986 46889999864
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.16 E-value=2.2e-10 Score=81.39 Aligned_cols=78 Identities=14% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcC---c-cCCCC-------Cccccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPT---W-RNPQH-------PFRVNSRF 94 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~~~-------~~~~~~~~ 94 (132)
.+++++|+|||+ |||+|+.+.|.+.++.++.. +.++.++.+...+ | ++.+. .-.++..|
T Consensus 73 ~gk~vvl~F~at--------wCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 73 PGRPTLLMFTAP--------SCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred CCCEEEEEEECC--------CChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence 678999999998 99999999999999887654 4455555332211 1 00000 01245689
Q ss_pred cccccceEEEEe-CCeEeEE
Q 032841 95 KLTGVPTLFRWE-NDIVSGR 113 (132)
Q Consensus 95 ~v~~vPt~~~~~-~g~~~~~ 113 (132)
++.++|+.++++ +|+...+
T Consensus 143 ~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 143 QVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred cCCccceEEEECCCCeEEEc
Confidence 999999998887 4665544
No 103
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.15 E-value=5e-10 Score=82.15 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc-----------Cc--cCCCCCcccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP-----------TW--RNPQHPFRVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~-----------~~--~~~~~~~~~~ 91 (132)
.|++++|.|||+ ||++|+...|.|+++.+++. .++.++.|+++... .+ +.-...|.+.
T Consensus 98 kGK~vvl~FwAs--------wCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl 169 (236)
T PLN02399 98 KGKVLLIVNVAS--------KCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIF 169 (236)
T ss_pred CCCeEEEEEEcC--------CCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccc
Confidence 579999999998 99999999999999999986 46899999874210 00 0111122111
Q ss_pred -----------cccc-------------ccccceEEEEe-CCeEeEEecCcc--hhcHHHHHHhhh
Q 032841 92 -----------SRFK-------------LTGVPTLFRWE-NDIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 92 -----------~~~~-------------v~~vPt~~~~~-~g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
..|+ |++.||.++++ +|+.+.++.|.. ...+..|+++|+
T Consensus 170 ~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 170 DKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1121 34579988887 588888888862 233455655553
No 104
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-10 Score=90.96 Aligned_cols=85 Identities=15% Similarity=0.330 Sum_probs=67.3
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+++.+|.||++ ||++|+++.|.+.++...+.+.+.+..||.+... + ++.+|+|+++||+.+|
T Consensus 46 ~~~~~~v~fyap--------wc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~---~------~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 46 DDSPWLVEFYAP--------WCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK---D------LCEKYGIQGFPTLKVF 108 (383)
T ss_pred cCCceEEEEECC--------CCcchhhhchHHHHHHHHhcCceEEEEeCchhhH---H------HHHhcCCccCcEEEEE
Confidence 778999999997 9999999999999999988877888899887765 3 7889999999999999
Q ss_pred eCCeEeEEecCcchhcHHHHHHhh
Q 032841 106 ENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
.+|.....+.+ ....+.+..|+
T Consensus 109 ~~~~~~~~~~~--~~~~~~~~~~~ 130 (383)
T KOG0191|consen 109 RPGKKPIDYSG--PRNAESLAEFL 130 (383)
T ss_pred cCCCceeeccC--cccHHHHHHHH
Confidence 99833333333 23334444443
No 105
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.12 E-value=2.3e-10 Score=76.77 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=47.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
..+.-++.|..+ |||+|++..|.+.++++..+ ++.+-.+..++..+..+ .| ...|.+.|||++++
T Consensus 40 ~~~~~ilvi~e~--------WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~---~~---lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 40 QKPYNILVITET--------WCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMD---QY---LTNGGRSIPTFIFL 104 (129)
T ss_dssp -S-EEEEEE--T--------T-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTT---TT---TT-SS--SSEEEEE
T ss_pred CCCcEEEEEECC--------CchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHH---HH---HhCCCeecCEEEEE
Confidence 345566777776 99999999999999999876 66666666655442212 11 13789999999999
Q ss_pred eC-CeEeEEecCcch
Q 032841 106 EN-DIVSGRLEDHEA 119 (132)
Q Consensus 106 ~~-g~~~~~~~~~~~ 119 (132)
++ |++++++.+...
T Consensus 105 d~~~~~lg~wgerP~ 119 (129)
T PF14595_consen 105 DKDGKELGRWGERPK 119 (129)
T ss_dssp -TT--EEEEEESS-H
T ss_pred cCCCCEeEEEcCCCH
Confidence 75 788988877543
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.09 E-value=6.9e-10 Score=77.36 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC------c------Cc-cCCCCCccc-
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR------P------TW-RNPQHPFRV- 90 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~------~------~~-~~~~~~~~~- 90 (132)
.+++++|+|||+ |||+|+...|.++++.+++. .++.++.|+.+.. . .+ +...-.|.+
T Consensus 28 ~gk~vlv~f~a~--------~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl 99 (167)
T PLN02412 28 KGKVLLIVNVAS--------KCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIF 99 (167)
T ss_pred CCCEEEEEEeCC--------CCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceE
Confidence 579999999998 99999999999999999987 4689999986431 0 11 110111211
Q ss_pred ----------ccccc-------------ccccceEEEEe-CCeEeEEecCcc--hhcHHHHHHhhhc
Q 032841 91 ----------NSRFK-------------LTGVPTLFRWE-NDIVSGRLEDHE--AHLEHKIKALLSA 131 (132)
Q Consensus 91 ----------~~~~~-------------v~~vPt~~~~~-~g~~~~~~~~~~--~~~~~~l~~~l~~ 131 (132)
+..|+ |.+.||.++++ +|+.+.++.|.. ...+..|+++|++
T Consensus 100 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 100 DKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred eEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 11122 56679988885 688888888763 2345556666653
No 107
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.09 E-value=6e-10 Score=75.21 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCC-ChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc---CccCCC----------CC-ccc
Q 032841 26 KNKANFILFLADKDPSTSLSW-CPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP---TWRNPQ----------HP-FRV 90 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pW-C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~----------~~-~~~ 90 (132)
.+++++|+||++ | ||+|+...|.+.++.+++. ++.++.|+++... .|.+.. .. -+.
T Consensus 25 ~gk~vvl~f~~~--------~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 95 (143)
T cd03014 25 AGKVKVISVFPS--------IDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSF 95 (143)
T ss_pred CCCeEEEEEEcC--------CCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHH
Confidence 578999999998 7 7999999999999999885 7999999987531 221100 00 123
Q ss_pred cccccccc------cceEEEEe-CCeEeEEecCcchhcHHHHHHhhh
Q 032841 91 NSRFKLTG------VPTLFRWE-NDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 91 ~~~~~v~~------vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++.|++.. .|+.++++ +|+.+....|.....+..+++.|+
T Consensus 96 ~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 96 GKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 45777753 68988887 688887777765544555665553
No 108
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.07 E-value=5.3e-10 Score=74.95 Aligned_cols=86 Identities=8% Similarity=0.088 Sum_probs=63.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccC----CC--------CCccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRN----PQ--------HPFRVNS 92 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~----~~--------~~~~~~~ 92 (132)
.+++++|.||++ .|||.|....|.+.++.+++. .++.++.|..+....++. -. ...+++.
T Consensus 22 ~gk~~ll~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 94 (140)
T cd03017 22 RGKPVVLYFYPK-------DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAK 94 (140)
T ss_pred CCCcEEEEEeCC-------CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHH
Confidence 588999999953 399999999999999988775 578899988765331110 00 0113456
Q ss_pred ccccccc---------ceEEEEe-CCeEeEEecCcc
Q 032841 93 RFKLTGV---------PTLFRWE-NDIVSGRLEDHE 118 (132)
Q Consensus 93 ~~~v~~v---------Pt~~~~~-~g~~~~~~~~~~ 118 (132)
.|++... |+.++++ +|+.+.++.|..
T Consensus 95 ~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 95 AYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred HhCCccccccccCCcceeEEEECCCCEEEEEEecCC
Confidence 7999888 8999998 588888887764
No 109
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.06 E-value=4e-09 Score=78.64 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=72.9
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVN 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (132)
+-+++++ .+....++..|+|+||-+ -++.|..+...|..++.+|+ .++|++|.....+ +.
T Consensus 132 ~~e~~l~-~ie~~~~~~~VVVHiY~~--------~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~----------~~ 191 (265)
T PF02114_consen 132 SGEEFLD-AIEKESKSTWVVVHIYEP--------GFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP----------AS 191 (265)
T ss_dssp SHHHHHH-HCCTSSTT-EEEEEEE-T--------TSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC----------TT
T ss_pred ChhhHHH-HHhccCCCcEEEEEEEeC--------CCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC----------cc
Confidence 4445544 333233456899999997 99999999999999999998 8999999986644 44
Q ss_pred ccccccccceEEEEeCCeEeEEecCc-----chhcHHHHHHhhhc
Q 032841 92 SRFKLTGVPTLFRWENDIVSGRLEDH-----EAHLEHKIKALLSA 131 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~~g~~~~~~~~~-----~~~~~~~l~~~l~~ 131 (132)
..|.++++||+++|++|..++.+++. .......|+.||..
T Consensus 192 ~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 192 ENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp TTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred cCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 68999999999999999999988874 34556678877753
No 110
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.05 E-value=8.1e-10 Score=78.18 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEE------EEEEeCCCc----Cc-c------CCCCCc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIAL------LQAYVGDRP----TW-R------NPQHPF 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~------~~v~~~~~~----~~-~------~~~~~~ 88 (132)
.||..+|.|||+ ||++|+...|.+.++.++ ++.+ +-||.++.. .+ + ....+|
T Consensus 58 ~GKV~lvn~~As--------wc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 58 AGKVRVVHHIAG--------RTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCCEEEEEEEec--------CCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCc
Confidence 599999999999 999999999999999643 2334 677776532 11 0 112221
Q ss_pred ---------cccccccccccceE-EEEe-CCeEeEEecCc
Q 032841 89 ---------RVNSRFKLTGVPTL-FRWE-NDIVSGRLEDH 117 (132)
Q Consensus 89 ---------~~~~~~~v~~vPt~-~~~~-~g~~~~~~~~~ 117 (132)
.++..|++.++|+. ++++ +|+.+.+..|.
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~ 166 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGA 166 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCC
Confidence 23468999999877 6776 58888888886
No 111
>smart00594 UAS UAS domain.
Probab=99.05 E-value=9.2e-10 Score=73.00 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred cchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHH---HHHhCCCCcEEEEEEeCCCcCccCCCCC
Q 032841 11 SSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYK---TLEASPDDIALLQAYVGDRPTWRNPQHP 87 (132)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 87 (132)
.+|++..+... .++|.++|+|+++ ||++|+.+...+-. +.+....++.++.+|+.... .
T Consensus 14 gs~~~a~~~Ak---~~~K~~lv~~~~~--------~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-------g 75 (122)
T smart00594 14 GSLEAAKQEAS---RQRRLLWLYLHSQ--------DSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-------G 75 (122)
T ss_pred CCHHHHHHHHH---hhcCCEEEEEeCC--------CCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-------H
Confidence 36677655444 3889999999998 99999998764322 33333446777788876543 1
Q ss_pred ccccccccccccceEEEEeC-C-e----EeEEecCc
Q 032841 88 FRVNSRFKLTGVPTLFRWEN-D-I----VSGRLEDH 117 (132)
Q Consensus 88 ~~~~~~~~v~~vPt~~~~~~-g-~----~~~~~~~~ 117 (132)
.+++..|++.++|++++++. | + .+.++.|.
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~ 111 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGE 111 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCC
Confidence 33778999999999999974 3 2 35566655
No 112
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.04 E-value=1.4e-09 Score=73.76 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=67.8
Q ss_pred CC-CeEEEEEE-eeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---Cc-----------cCCCCCc
Q 032841 26 KN-KANFILFL-ADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TW-----------RNPQHPF 88 (132)
Q Consensus 26 ~~-~~v~v~F~-a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~-----------~~~~~~~ 88 (132)
.+ ++++|.|| ++ ||+.|....|.++++.+++. .++.++.|+.+... .| .++...-
T Consensus 26 ~g~k~~vl~f~~~~--------~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~ 97 (149)
T cd03018 26 RGRKPVVLVFFPLA--------FTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHG 97 (149)
T ss_pred cCCCeEEEEEeCCC--------CCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchh
Confidence 45 78888887 77 99999999999999998885 57899999876522 11 1111002
Q ss_pred ccccccccc----ccc--eEEEEe-CCeEeEEecCcc--hhcHHHHHHhhh
Q 032841 89 RVNSRFKLT----GVP--TLFRWE-NDIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 89 ~~~~~~~v~----~vP--t~~~~~-~g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
.++..|++. ++| +.++++ +|+.+.+..|.. ..++..+.+.|+
T Consensus 98 ~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 98 EVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 244567776 333 777776 688888888876 666777776665
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.04 E-value=1.1e-09 Score=76.26 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=60.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC--------cCccC----CCCCc----
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR--------PTWRN----PQHPF---- 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~--------~~~~~----~~~~~---- 88 (132)
.+++++|+||++ |||.|+...|.+.++.+++. .++.++.|+.+.. ..|+. -..+|
T Consensus 24 ~~k~~ll~f~~t--------~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 95 (171)
T cd02969 24 DGKALVVMFICN--------HCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLL 95 (171)
T ss_pred CCCEEEEEEECC--------CCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEE
Confidence 578999999998 99999999999999999886 5799999988652 11211 01111
Q ss_pred ----cccccccccccceEEEEe-CCeEeEE
Q 032841 89 ----RVNSRFKLTGVPTLFRWE-NDIVSGR 113 (132)
Q Consensus 89 ----~~~~~~~v~~vPt~~~~~-~g~~~~~ 113 (132)
.+++.|++.++|++++++ +|+.+.+
T Consensus 96 D~~~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 96 DETQEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred CCchHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 235689999999999997 5665544
No 114
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.02 E-value=2.6e-09 Score=75.46 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCCeE-EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC
Q 032841 26 KNKAN-FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v-~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~ 76 (132)
.|+++ ++.+||+ |||+|+...|.++++.+++. .++.++.|+++
T Consensus 39 ~Gk~vvlv~n~at--------wCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVAC--------KCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECC--------CCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 57754 4566998 99999999999999999886 46889888864
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.00 E-value=2.4e-09 Score=73.34 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=37.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~ 76 (132)
.|++++|+|||+ ||| |+...|.++++.+++. .++.++.|+++
T Consensus 21 ~Gk~vvl~fwat--------wC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVAS--------KCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcC--------CCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 589999999998 999 9999999999999986 56888888764
No 116
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-09 Score=84.91 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=75.5
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCcCcc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRPTWR 82 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 82 (132)
+..+...+|+++.. .....++|.||++ ||++|+.+.|.++++...+. ..+.+..+|++...
T Consensus 146 v~~l~~~~~~~~~~------~~~~~~lv~f~aP--------wc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~--- 208 (383)
T KOG0191|consen 146 VFELTKDNFDETVK------DSDADWLVEFYAP--------WCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHK--- 208 (383)
T ss_pred eEEccccchhhhhh------ccCcceEEEEecc--------ccHHhhhcChHHHHHHHHhccCcceEEEeeccchHH---
Confidence 44555667776643 3567889999996 99999999999999998774 57888888876322
Q ss_pred CCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 83 NPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 83 ~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
. ++.+++|.++||+.+|.+|.. .........+.+.|..|+++
T Consensus 209 ~------~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 209 S------LASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred H------HhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHh
Confidence 2 677999999999999998876 22222234556677777653
No 117
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.98 E-value=4.1e-09 Score=72.22 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=37.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEe
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYV 75 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~ 75 (132)
.|++++|.|||+ |||+|+...|.+++++++++ .++.++.++.
T Consensus 21 ~Gk~vvv~~~as--------~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVAS--------ECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCC--------CCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 688999999998 99999999999999999986 4788888885
No 118
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.3e-10 Score=79.49 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=65.0
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
+....++|.|+|. |.|.|+.+.|.+.++..+|. ...+|.+||++..+ +....|++...=+-+.+||++
T Consensus 142 nk~t~WlIeFfa~--------ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp---d~a~kfris~s~~srQLPT~i 210 (265)
T KOG0914|consen 142 NKRTYWLIEFFAC--------WSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP---DVAAKFRISLSPGSRQLPTYI 210 (265)
T ss_pred CCceEEEEEEEee--------cChhhcccccccHHHHHHhCCCCCcccceeeccCc---ChHHheeeccCcccccCCeEE
Confidence 4567899999999 99999999999999999987 67999999999977 533334433333446799999
Q ss_pred EEeCCeEeEEec
Q 032841 104 RWENDIVSGRLE 115 (132)
Q Consensus 104 ~~~~g~~~~~~~ 115 (132)
+|.+|+++.|.-
T Consensus 211 lFq~gkE~~RrP 222 (265)
T KOG0914|consen 211 LFQKGKEVSRRP 222 (265)
T ss_pred EEccchhhhcCc
Confidence 999999987653
No 119
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.95 E-value=2.9e-09 Score=67.24 Aligned_cols=73 Identities=25% Similarity=0.566 Sum_probs=58.9
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC-CCcCccCCCCCcccccccc--ccccceEE
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG-DRPTWRNPQHPFRVNSRFK--LTGVPTLF 103 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~--v~~vPt~~ 103 (132)
++++++.||++ |||+|+.+.|.+.++.+.+...+.++.+++. ... + ....|+ +..+|+++
T Consensus 32 ~~~~~v~f~~~--------~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~------~~~~~~~~~~~~p~~~ 94 (127)
T COG0526 32 GKPVLVDFWAP--------WCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP---D------LAAEFGVAVRSIPTLL 94 (127)
T ss_pred CceEEEEEEcC--------cCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh---H------HHHHHhhhhccCCeEE
Confidence 78999999987 9999999999999999988766889999986 322 2 456788 89999999
Q ss_pred EEeCCeEeEEecC
Q 032841 104 RWENDIVSGRLED 116 (132)
Q Consensus 104 ~~~~g~~~~~~~~ 116 (132)
++.+|..+....+
T Consensus 95 ~~~~~~~~~~~~~ 107 (127)
T COG0526 95 LFKDGKEVDRLVG 107 (127)
T ss_pred EEeCcchhhhhhh
Confidence 8888765444444
No 120
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.93 E-value=4.4e-09 Score=71.91 Aligned_cols=86 Identities=10% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCcc----CCCCCc--------cccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWR----NPQHPF--------RVNS 92 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~----~~~~~~--------~~~~ 92 (132)
++++++|.||++ .||+.|+...+.+.++.+++. .++.++.|+.+....++ .-...| .+++
T Consensus 29 ~gk~~ll~f~~~-------~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 101 (154)
T PRK09437 29 QGQRVLVYFYPK-------AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAE 101 (154)
T ss_pred CCCCEEEEEECC-------CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHH
Confidence 678999999986 378899999999999988875 56999999886533111 001111 2345
Q ss_pred ccccccc------------ceEEEEe-CCeEeEEecCcc
Q 032841 93 RFKLTGV------------PTLFRWE-NDIVSGRLEDHE 118 (132)
Q Consensus 93 ~~~v~~v------------Pt~~~~~-~g~~~~~~~~~~ 118 (132)
.|++... |+.++++ +|+.+.++.|..
T Consensus 102 ~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 102 QFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred HhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 7787654 6677776 688888888763
No 121
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.93 E-value=4.3e-09 Score=73.31 Aligned_cols=83 Identities=7% Similarity=0.005 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCC-ChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc---CccCC-CC----------Cccc
Q 032841 26 KNKANFILFLADKDPSTSLSW-CPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP---TWRNP-QH----------PFRV 90 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pW-C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~-~~----------~~~~ 90 (132)
.|++++|.||++ | ||+|+...|.++++.+++. ++.++.|+.+... .|.+. .. ...+
T Consensus 43 ~Gk~vvl~f~~s--------~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~ 113 (167)
T PRK00522 43 AGKRKVLNIFPS--------IDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSF 113 (167)
T ss_pred CCCEEEEEEEcC--------CCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHH
Confidence 578999999998 8 9999999999999998884 7899999887522 22210 00 1124
Q ss_pred cccccccccc---------eEEEEe-CCeEeEEecCc
Q 032841 91 NSRFKLTGVP---------TLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 91 ~~~~~v~~vP---------t~~~~~-~g~~~~~~~~~ 117 (132)
++.||+.+.| +.++++ +|+.+....+.
T Consensus 114 ~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 114 GKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred HHHhCCeecccccCCceeeEEEEECCCCeEEEEEECC
Confidence 5688998877 888887 67777666543
No 122
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.93 E-value=9.8e-10 Score=72.03 Aligned_cols=77 Identities=17% Similarity=0.363 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcC---cc-CCCC--------Cccccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPT---WR-NPQH--------PFRVNS 92 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~---~~-~~~~--------~~~~~~ 92 (132)
.+++++|.||++ +|||.|+...+.++++.++++ .++.++.|+.+...+ |. ..+. ...+++
T Consensus 24 ~gk~~vl~f~~~-------~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 96 (124)
T PF00578_consen 24 KGKPVVLFFWPT-------AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAK 96 (124)
T ss_dssp TTSEEEEEEEST-------TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHH
T ss_pred CCCcEEEEEeCc-------cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHH
Confidence 679999999997 699999999999999998876 479999999876431 11 0011 112456
Q ss_pred ccccc------ccceEEEEeCCe
Q 032841 93 RFKLT------GVPTLFRWENDI 109 (132)
Q Consensus 93 ~~~v~------~vPt~~~~~~g~ 109 (132)
.|++. .+|++++++.++
T Consensus 97 ~~~~~~~~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 97 AFGIEDEKDTLALPAVFLIDPDG 119 (124)
T ss_dssp HTTCEETTTSEESEEEEEEETTS
T ss_pred HcCCccccCCceEeEEEEECCCC
Confidence 78888 999999998643
No 123
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.89 E-value=3.8e-09 Score=85.05 Aligned_cols=96 Identities=27% Similarity=0.386 Sum_probs=65.0
Q ss_pred HHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHH---HHHhCCCCcEEEEEEeCCCcCccCCCCCccccccc
Q 032841 18 DKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYK---TLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRF 94 (132)
Q Consensus 18 ~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (132)
+++++. +.+|+|+|+|||+ ||-.|+.+++..-. +..+. .+++++++|+..+. |. .-.+.++|
T Consensus 466 ~~~la~-~~~~pVmlDfyAd--------WCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~----p~-~~~lLk~~ 530 (569)
T COG4232 466 DQALAE-AKAKPVMLDFYAD--------WCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTAND----PA-ITALLKRL 530 (569)
T ss_pred HHHHHh-CCCCcEEEeeehh--------HHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCC----HH-HHHHHHHc
Confidence 444442 2446999999998 99999999998663 22333 48999999997754 11 11145789
Q ss_pred cccccceEEEEe-CCeEeEEecCcchhcHHHHHHhhh
Q 032841 95 KLTGVPTLFRWE-NDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 95 ~v~~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++-|+|++++|+ +|++...+.|. .+++.+.++++
T Consensus 531 ~~~G~P~~~ff~~~g~e~~~l~gf--~~a~~~~~~l~ 565 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPEILTGF--LTADAFLEHLE 565 (569)
T ss_pred CCCCCCEEEEECCCCCcCcCCcce--ecHHHHHHHHH
Confidence 999999999999 56654444443 33444555543
No 124
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=5.6e-10 Score=89.37 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=62.2
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCCcCc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP---DDIALLQAYVGDRPTW 81 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~~~~ 81 (132)
++.+.+.+|...+- .+.+..+|.||++ |||+|+++.|.++++++... .-+.+..||+-+..
T Consensus 41 ii~Ld~~tf~~~v~------~~~~~~lVEFy~s--------wCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-- 104 (606)
T KOG1731|consen 41 IIELDVDTFNAAVF------GSRKAKLVEFYNS--------WCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-- 104 (606)
T ss_pred eEEeehhhhHHHhc------ccchhHHHHHHHh--------hhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh--
Confidence 34455666666532 2445778999998 99999999999999988764 34677778875533
Q ss_pred cCCCCCccccccccccccceEEEEeCC
Q 032841 82 RNPQHPFRVNSRFKLTGVPTLFRWEND 108 (132)
Q Consensus 82 ~~~~~~~~~~~~~~v~~vPt~~~~~~g 108 (132)
+.. +|.+|+|.++||+-+|..+
T Consensus 105 -N~~----lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 105 -NVK----LCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred -hhh----hHhhcCCCCCceeeecCCc
Confidence 222 8899999999999998754
No 125
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=4.8e-09 Score=62.34 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=50.1
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
+..|+++ |||+|+++.+.+.+. ++.+..+|++...+..+ .+.+.+++.++|++++. |+.
T Consensus 2 i~lf~~~--------~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~-----~~~~~~~~~~vP~~~~~--~~~ 60 (74)
T TIGR02196 2 VKVYTTP--------WCPPCKKAKEYLTSK------GIAFEEIDVEKDSAARE-----EVLKVLGQRGVPVIVIG--HKI 60 (74)
T ss_pred EEEEcCC--------CChhHHHHHHHHHHC------CCeEEEEeccCCHHHHH-----HHHHHhCCCcccEEEEC--CEE
Confidence 3567776 999999999888652 57788888876441100 02356899999999874 532
Q ss_pred eEEecCcchhcHHHHHHhhh
Q 032841 111 SGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l~ 130 (132)
+.|. ..+.|+++|+
T Consensus 61 ---~~g~---~~~~i~~~i~ 74 (74)
T TIGR02196 61 ---IVGF---DPEKLDQLLE 74 (74)
T ss_pred ---EeeC---CHHHHHHHhC
Confidence 5553 4567888874
No 126
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.85 E-value=1e-08 Score=71.65 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=61.6
Q ss_pred CCCeEEEEEE-eeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC--------CCCc----
Q 032841 26 KNKANFILFL-ADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP--------QHPF---- 88 (132)
Q Consensus 26 ~~~~v~v~F~-a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~--------~~~~---- 88 (132)
.|+.++|+|| ++ ||+.|....|.++++++++. .++.++.|+++... .|... ..+|
T Consensus 28 ~Gk~vvl~F~~~~--------~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 99 (173)
T cd03015 28 KGKWVVLFFYPLD--------FTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLA 99 (173)
T ss_pred CCCEEEEEEECCC--------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEE
Confidence 5789999999 66 99999999999999998885 57889999886532 23221 1112
Q ss_pred ----ccccccccc------ccceEEEEe-CCeEeEEecCc
Q 032841 89 ----RVNSRFKLT------GVPTLFRWE-NDIVSGRLEDH 117 (132)
Q Consensus 89 ----~~~~~~~v~------~vPt~~~~~-~g~~~~~~~~~ 117 (132)
.+++.|++. .+|+.++++ +|+...+..+.
T Consensus 100 D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 100 DPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred CCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC
Confidence 235678886 678999998 57776666543
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.82 E-value=1.2e-08 Score=57.70 Aligned_cols=63 Identities=27% Similarity=0.559 Sum_probs=48.7
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCC
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEND 108 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g 108 (132)
++.|+++ ||+.|+++.+.+.++ +....++.++.++++....... ....+++.++|+++++++|
T Consensus 1 l~~~~~~--------~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAP--------WCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEK------ELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECC--------CChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhh------HHHhCCCccccEEEEEeCC
Confidence 4678887 999999999999998 4444589999999877551111 0136889999999999877
No 128
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.73 E-value=2.8e-08 Score=66.46 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC--CCCc--------ccc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP--QHPF--------RVN 91 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~--~~~~--------~~~ 91 (132)
.+++++|.||.+ .||+.|....|.+.++.+++. .++.++.|..+... .|.+. ...| .++
T Consensus 21 ~gk~~ll~f~~~-------~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 93 (140)
T cd02971 21 KGKWVVLFFYPK-------DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFA 93 (140)
T ss_pred CCCeEEEEEeCC-------CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHH
Confidence 588999999943 399999999999999998874 57889999886532 11110 1111 234
Q ss_pred ccccccccc---------eEEEEe-CCeEeEEecCcc
Q 032841 92 SRFKLTGVP---------TLFRWE-NDIVSGRLEDHE 118 (132)
Q Consensus 92 ~~~~v~~vP---------t~~~~~-~g~~~~~~~~~~ 118 (132)
..|++...| ++++++ +|+.+.+..|..
T Consensus 94 ~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 94 KAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred HHcCCccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 678877665 788887 488888777764
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.72 E-value=4.4e-08 Score=65.99 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.8
Q ss_pred CCeEEE-EEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC
Q 032841 27 NKANFI-LFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR 78 (132)
Q Consensus 27 ~~~v~v-~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~ 78 (132)
+++++| +|+++ |||+|+...|.+.++.+++. .++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~--------~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGF--------GCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCC--------CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 344545 45687 99999999999999998875 5789999987654
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.72 E-value=8.1e-08 Score=68.09 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCCeEEEEEE-eeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC-----CCCc-------
Q 032841 26 KNKANFILFL-ADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP-----QHPF------- 88 (132)
Q Consensus 26 ~~~~v~v~F~-a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~-----~~~~------- 88 (132)
.|++++|+|| ++ ||+.|....|.+.++.+++. .++.++.|+.+... .|.+. .-.|
T Consensus 30 ~Gk~vvl~F~p~~--------~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~ 101 (187)
T TIGR03137 30 KGKWSVFFFYPAD--------FTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPT 101 (187)
T ss_pred CCCEEEEEEECCC--------cCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCc
Confidence 5789999999 87 99999999999999988875 57888888877521 11110 1111
Q ss_pred -ccccccccc------ccceEEEEe-CCeEeEEecC
Q 032841 89 -RVNSRFKLT------GVPTLFRWE-NDIVSGRLED 116 (132)
Q Consensus 89 -~~~~~~~v~------~vPt~~~~~-~g~~~~~~~~ 116 (132)
.+++.|++. +.|+.++++ +|.......+
T Consensus 102 ~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 102 GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred cHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 245678886 469888887 5777665543
No 131
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.68 E-value=3.7e-08 Score=59.31 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
++.|+++ |||+|+++++.+.+. ++.+-.+|+++...... .+ ....+++.++|++ ++++|..
T Consensus 2 v~ly~~~--------~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~---~~-~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTT--------WCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAAD---RV-VSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECC--------CChhHHHHHHHHHHc------CCceEEEeCcCCHhHHH---HH-HHHhCCCceeCEE-EECCCeE
Confidence 4678887 999999999988765 24455677765441000 00 0112488999997 5777754
Q ss_pred eE
Q 032841 111 SG 112 (132)
Q Consensus 111 ~~ 112 (132)
+.
T Consensus 63 l~ 64 (77)
T TIGR02200 63 LT 64 (77)
T ss_pred ec
Confidence 43
No 132
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.66 E-value=2.1e-07 Score=67.53 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCCCCccccccccccccceEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
.++.-+++|+.+ .|+.|+.+.|++..+.++++ +.++.|++|... ...+....-.++++++|..+|+++
T Consensus 119 a~~~gL~~F~~~--------~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 119 AQKYGLFFFYRS--------DCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred hhCeEEEEEEcC--------CCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 356778899997 99999999999999999985 778888887532 110100001156789999999999
Q ss_pred EEeCCeEeEEecCcchhcHHHH
Q 032841 104 RWENDIVSGRLEDHEAHLEHKI 125 (132)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~l 125 (132)
+++.+......++.+....+.|
T Consensus 189 Lv~~~~~~~~pv~~G~~s~~~L 210 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQGFMSLDEL 210 (215)
T ss_pred EEECCCCeEEEEeeecCCHHHH
Confidence 9986542223333333344444
No 133
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.8e-07 Score=62.58 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHH---HHHhCCCCcEEEEEEeCCCcCc--cCCCC----C-
Q 032841 18 DKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYK---TLEASPDDIALLQAYVGDRPTW--RNPQH----P- 87 (132)
Q Consensus 18 ~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~~~----~- 87 (132)
++...+...++-++++|.+. .|+.|.++...+.. +.+-+.+++.++++++.....- ..... .
T Consensus 33 ~d~ksi~~~~Kylllmfes~--------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~ 104 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESN--------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMST 104 (182)
T ss_pred HHHHhcCccCcEEEEEEcCC--------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecH
Confidence 33444445788999999776 99999999876543 4444556789999998654310 00000 0
Q ss_pred ccccccccccccceEEEEeC-CeEeEEecCc
Q 032841 88 FRVNSRFKLTGVPTLFRWEN-DIVSGRLEDH 117 (132)
Q Consensus 88 ~~~~~~~~v~~vPt~~~~~~-g~~~~~~~~~ 117 (132)
-.++..|+|+++||++++++ |+.+..+-|.
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY 135 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGY 135 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCC
Confidence 02678899999999999985 7878888776
No 134
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.58 E-value=5.6e-07 Score=66.77 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.2
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCCCCccccccccccccceEEE
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++.-+++||.+ -||.|+++.|+++.+.++|+ +.++.|++|... ...++...-.++.++||+.+|++++
T Consensus 150 ~~~gL~fFy~~--------~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 150 QSYGLFFFYRG--------KSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred hceeEEEEECC--------CCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 44678899997 89999999999999999986 778888887653 1111111111457899999999999
Q ss_pred EeCC
Q 032841 105 WEND 108 (132)
Q Consensus 105 ~~~g 108 (132)
++..
T Consensus 220 v~~~ 223 (256)
T TIGR02739 220 VNPK 223 (256)
T ss_pred EECC
Confidence 9864
No 135
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.57 E-value=2e-08 Score=61.54 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=40.9
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc-CccCCCCCccccccccccccceEEEEeCCe
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP-TWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
++.|+++ |||+|+++.+.+.++. .+..+.++.++.+... +..+ .+...+++.++|++++ +|+
T Consensus 1 V~~f~~~--------~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~-----~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKS--------YCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQD-----YLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECC--------CChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHH-----HHHHHhCCCCCCeEEE--CCE
Confidence 3577776 9999999999999975 3334667777665322 0000 0334578899999843 564
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.56 E-value=4e-07 Score=59.96 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=69.5
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhh--HHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAE--PVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~--p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
+|++.++... .++|.++|+|+++.++ .||..|+... |.+.++.+ .++.+...|+...+ .++
T Consensus 5 s~~eAl~~ak---~e~K~llVylhs~~~~----~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~e-------g~~ 67 (116)
T cd02991 5 TYSQALNDAK---QELRFLLVYLHGDDHQ----DTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPE-------GYR 67 (116)
T ss_pred cHHHHHHHHH---hhCCEEEEEEeCCCCc----cHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChH-------HHH
Confidence 5666655443 4899999999997444 3999998765 44555543 46788888887643 244
Q ss_pred ccccccccccceEEEEe---C-CeEeEEecCcc--hhcHHHHHHhhh
Q 032841 90 VNSRFKLTGVPTLFRWE---N-DIVSGRLEDHE--AHLEHKIKALLS 130 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~---~-g~~~~~~~~~~--~~~~~~l~~~l~ 130 (132)
++..+++.++|+++++. + .+.+.|+.|.- ......|+.+++
T Consensus 68 la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 68 VSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred HHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 77899999999999983 2 44578888872 223344444444
No 137
>PRK15000 peroxidase; Provisional
Probab=98.56 E-value=2.9e-07 Score=66.01 Aligned_cols=84 Identities=14% Similarity=0.284 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC--------CCCc-----
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP--------QHPF----- 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~--------~~~~----- 88 (132)
.++.++|+||+. .||+.|....+.|.+..+++. .++.++.|+++... .|... .-.|
T Consensus 33 ~gk~vvL~F~p~-------~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD 105 (200)
T PRK15000 33 NGKTTVLFFWPM-------DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVAD 105 (200)
T ss_pred CCCEEEEEEECC-------CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEEC
Confidence 578999999996 399999999999999998886 57899999988532 34210 0122
Q ss_pred ---ccccccccc------ccceEEEEe-CCeEeEEecC
Q 032841 89 ---RVNSRFKLT------GVPTLFRWE-NDIVSGRLED 116 (132)
Q Consensus 89 ---~~~~~~~v~------~vPt~~~~~-~g~~~~~~~~ 116 (132)
.+++.|++. ++|+.++++ +|+......+
T Consensus 106 ~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~ 143 (200)
T PRK15000 106 VKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVN 143 (200)
T ss_pred CCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEec
Confidence 245678987 799999998 5766655554
No 138
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.54 E-value=3.9e-07 Score=64.78 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=59.8
Q ss_pred CCCeEEEEEE-eeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC-----CCCc-------
Q 032841 26 KNKANFILFL-ADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP-----QHPF------- 88 (132)
Q Consensus 26 ~~~~v~v~F~-a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~-----~~~~------- 88 (132)
.|++++|.|| ++ |||.|....+.+.+..+++. .++.++.|+.+... .|.+. .-+|
T Consensus 30 ~Gk~vvL~F~P~~--------~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 30 EGRWSVFFFYPAD--------FTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred CCCeEEEEEECCC--------CCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 5789999999 87 99999999999999998885 57889999987633 12210 1122
Q ss_pred -cccccccc----ccc--ceEEEEe-CCeEeEEec
Q 032841 89 -RVNSRFKL----TGV--PTLFRWE-NDIVSGRLE 115 (132)
Q Consensus 89 -~~~~~~~v----~~v--Pt~~~~~-~g~~~~~~~ 115 (132)
.+++.||+ .++ |+.++++ +|++.....
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 24577888 366 9999998 576655443
No 139
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.54 E-value=1.5e-06 Score=61.54 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=71.0
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
+.+-.++++... +...|++.||-. --..|+-|...++.+++.+. ..+|++||+...+ -
T Consensus 71 v~~Ekdf~~~~~----kS~kVVcHFY~~--------~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~P-----F---- 128 (211)
T KOG1672|consen 71 VASEKDFFEEVK----KSEKVVCHFYRP--------EFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAP-----F---- 128 (211)
T ss_pred eccHHHHHHHhh----cCceEEEEEEcC--------CCcceehHHHHHHHHHHhcc-cceEEEEecccCc-----e----
Confidence 344455555333 456788999996 78899999999999999887 6899999998765 2
Q ss_pred ccccccccccceEEEEeCCeEeEEecCc
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
++.+++|+.+||+++|.+|..+.+++|.
T Consensus 129 lv~kL~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeeeeeeEeeeEEEEEcCEEEEEEeeH
Confidence 6789999999999999999999999986
No 140
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.50 E-value=4.8e-07 Score=60.60 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=38.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChh-HHhhhHHHHHHHHhCCC----CcEEEEEEeCC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPD-CVRAEPVIYKTLEASPD----DIALLQAYVGD 77 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~-C~~~~p~~~~~~~~~~~----~~~~~~v~~~~ 77 (132)
.+++++|.||++ ||++ |....+.+.++.+++.+ ++.++.|+.+.
T Consensus 21 ~gk~~vl~f~~~--------~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYT--------HCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcC--------CCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 578999999998 9998 99999999999988863 48999998864
No 141
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.40 E-value=2.1e-06 Score=63.48 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=53.1
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCCCCccccccccccccceEEE
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++.-+++||.+ -||.|+++.|+++.+.++++ +.++-|++|... .+.++-..-..+.+++|+.+|++++
T Consensus 143 ~~~GL~fFy~s--------~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 143 EHYGLMFFYRG--------QDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred hcceEEEEECC--------CCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 34668899997 89999999999999999986 777777776533 1111100111346899999999999
Q ss_pred EeCCe
Q 032841 105 WENDI 109 (132)
Q Consensus 105 ~~~g~ 109 (132)
++...
T Consensus 213 v~~~t 217 (248)
T PRK13703 213 VDPKS 217 (248)
T ss_pred EECCC
Confidence 98643
No 142
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.38 E-value=7.1e-07 Score=55.29 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=43.1
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
++.|+.+ |||.|+++...|+++..++ .++.+..+|++.... . .+.+.....+++.++|++++ +|+.
T Consensus 3 v~iy~~~--------~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~--~-~~el~~~~~~~~~~vP~ifi--~g~~ 68 (85)
T PRK11200 3 VVIFGRP--------GCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGI--S-KADLEKTVGKPVETVPQIFV--DQKH 68 (85)
T ss_pred EEEEeCC--------CChhHHHHHHHHHhhcccc-cCCcEEEEECCCChH--H-HHHHHHHHCCCCCcCCEEEE--CCEE
Confidence 4556665 9999999999999998765 378888888876420 0 00111111235689999864 6643
No 143
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.34 E-value=1.9e-06 Score=64.20 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=59.1
Q ss_pred CCCeEEEEEE-eeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC--------CCCc----
Q 032841 26 KNKANFILFL-ADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP--------QHPF---- 88 (132)
Q Consensus 26 ~~~~v~v~F~-a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~--------~~~~---- 88 (132)
.++.+++.|| ++ |||.|....|.+.+..+++. .++.++.|++|... .|.+. .-.|
T Consensus 97 kgk~vVL~FyPa~--------ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLs 168 (261)
T PTZ00137 97 KDSYGLLVFYPLD--------FTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFS 168 (261)
T ss_pred CCCeEEEEEECCC--------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEE
Confidence 4677888887 76 99999999999999988885 56889999987631 34321 1122
Q ss_pred ----ccccccccc-----ccceEEEEe-CCeEeEEe
Q 032841 89 ----RVNSRFKLT-----GVPTLFRWE-NDIVSGRL 114 (132)
Q Consensus 89 ----~~~~~~~v~-----~vPt~~~~~-~g~~~~~~ 114 (132)
.+++.||+. .+|+.++++ +|......
T Consensus 169 D~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 169 DISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred cCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 346788885 589999998 57665544
No 144
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.33 E-value=2.4e-06 Score=61.27 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCCeEEE-EEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccC-----CC--CCc-----
Q 032841 26 KNKANFI-LFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRN-----PQ--HPF----- 88 (132)
Q Consensus 26 ~~~~v~v-~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~-----~~--~~~----- 88 (132)
.|+.++| .||++ |||.|....+.|.++.+++. .++.++.|+++... +|.. .+ .+|
T Consensus 26 ~gk~vvL~~~p~~--------~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D 97 (202)
T PRK13190 26 KGKWVLLFSHPAD--------FTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIAD 97 (202)
T ss_pred CCCEEEEEEEcCC--------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEEC
Confidence 4676665 67898 99999999999999988875 47889999887532 2311 01 122
Q ss_pred ---ccccccccc------ccceEEEEeC-CeEeE
Q 032841 89 ---RVNSRFKLT------GVPTLFRWEN-DIVSG 112 (132)
Q Consensus 89 ---~~~~~~~v~------~vPt~~~~~~-g~~~~ 112 (132)
.+++.||+. ++|+.++++. |+...
T Consensus 98 ~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~ 131 (202)
T PRK13190 98 IDKELAREYNLIDENSGATVRGVFIIDPNQIVRW 131 (202)
T ss_pred CChHHHHHcCCccccCCcEEeEEEEECCCCEEEE
Confidence 245678884 6999999985 55443
No 145
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.28 E-value=4.3e-07 Score=63.06 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=41.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhH-HHHH--HHHhCCCCcEEEEEEeCCCcCccCCCCCccccccc--------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEP-VIYK--TLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRF-------- 94 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 94 (132)
++|++||.++++ ||..|+.|.. .+.+ +++.+..++.-|+||.++.+ + ++..|
T Consensus 36 e~KpIfl~ig~~--------~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~P---d------id~~y~~~~~~~~ 98 (163)
T PF03190_consen 36 ENKPIFLSIGYS--------WCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERP---D------IDKIYMNAVQAMS 98 (163)
T ss_dssp HT--EEEEEE-T--------T-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-H---H------HHHHHHHHHHHHH
T ss_pred cCCcEEEEEEec--------CCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCc---c------HHHHHHHHHHHhc
Confidence 789999999998 9999999985 3332 34444445677888887766 3 44445
Q ss_pred cccccceEEEEeC-CeEe
Q 032841 95 KLTGVPTLFRWEN-DIVS 111 (132)
Q Consensus 95 ~v~~vPt~~~~~~-g~~~ 111 (132)
|..|.|+.+++.. |+.+
T Consensus 99 ~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp S---SSEEEEE-TTS-EE
T ss_pred CCCCCCceEEECCCCCee
Confidence 7889999999985 6553
No 146
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.23 E-value=2.9e-06 Score=60.11 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~ 76 (132)
.|++++|.|||+ ||+.|+ ..|.|+++.+++. .++.++.+.++
T Consensus 24 ~GKvvLVvf~AS--------~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVAS--------KCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeC--------CCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999998 999996 5889999999986 46888888764
No 147
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.22 E-value=5.8e-06 Score=59.98 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=57.6
Q ss_pred CCCeE-EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccC-------CCCCc-----
Q 032841 26 KNKAN-FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRN-------PQHPF----- 88 (132)
Q Consensus 26 ~~~~v-~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~-------~~~~~----- 88 (132)
.|+.+ ++.|+++ |||.|....+.+.++.+++. .++.++.|+++... .|.+ ..-.|
T Consensus 27 ~Gk~vVL~~~pa~--------~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D 98 (215)
T PRK13599 27 AGKWFVLFSHPAD--------FTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIAD 98 (215)
T ss_pred CCCeEEEEEeCCC--------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEEC
Confidence 46654 6788998 99999999999999998885 57899999988632 2321 01112
Q ss_pred ---cccccccc-------cccceEEEEeC-CeEeEEe
Q 032841 89 ---RVNSRFKL-------TGVPTLFRWEN-DIVSGRL 114 (132)
Q Consensus 89 ---~~~~~~~v-------~~vPt~~~~~~-g~~~~~~ 114 (132)
+++..||+ .++|+.++++. |+.....
T Consensus 99 ~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 99 DLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred CCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 24567886 37899999985 6654443
No 148
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.21 E-value=5.9e-06 Score=50.21 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=46.1
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHH
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKI 125 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l 125 (132)
+|+.|..+...++++...++ +.+-.+++...+ -..+|||.++||+++ +|+ .++.|. .-..+.|
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~----------~~~~ygv~~vPalvI--ng~--~~~~G~-~p~~~el 71 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELG--IEVEIIDIEDFE----------EIEKYGVMSVPALVI--NGK--VVFVGR-VPSKEEL 71 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHH----------HHHHTT-SSSSEEEE--TTE--EEEESS---HHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHH----------HHHHcCCCCCCEEEE--CCE--EEEEec-CCCHHHH
Confidence 89999999999999998884 555444443322 236899999999955 564 345563 2345677
Q ss_pred HHhhh
Q 032841 126 KALLS 130 (132)
Q Consensus 126 ~~~l~ 130 (132)
+++|+
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77764
No 149
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.18 E-value=8.1e-06 Score=59.21 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCeEEE-EEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccC-------CCCCc-----
Q 032841 26 KNKANFI-LFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRN-------PQHPF----- 88 (132)
Q Consensus 26 ~~~~v~v-~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~-------~~~~~----- 88 (132)
.|+.++| .|+++ ||+.|....+.|.+.++++. .++.++.|++|... .|.+ -..+|
T Consensus 32 ~GK~vvLff~pa~--------ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD 103 (215)
T PRK13191 32 KGRWFVLFSHPGD--------FTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIAD 103 (215)
T ss_pred CCCcEEEEEeCCC--------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEEC
Confidence 4666555 77887 99999999999999998885 57899999988644 2421 01122
Q ss_pred ---ccccccccc-------ccceEEEEeC-CeEeEEec
Q 032841 89 ---RVNSRFKLT-------GVPTLFRWEN-DIVSGRLE 115 (132)
Q Consensus 89 ---~~~~~~~v~-------~vPt~~~~~~-g~~~~~~~ 115 (132)
.+++.||+. .+|+.++++. |.......
T Consensus 104 ~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 141 (215)
T PRK13191 104 PMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILY 141 (215)
T ss_pred CchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEe
Confidence 235677763 5799999984 65554443
No 150
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.15 E-value=1.9e-05 Score=56.46 Aligned_cols=84 Identities=10% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC--------CCCc-----
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP--------QHPF----- 88 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~--------~~~~----- 88 (132)
.|+.++|+||+. .||+.|....+.+.++.+++. .++.++.|+++... .|... .-.|
T Consensus 35 ~Gk~~lL~F~p~-------~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 35 KGKWVVLFFYPL-------DFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred CCCEEEEEEEcC-------CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 578999999975 399999999999999988876 57899999987543 23110 0122
Q ss_pred ---ccccccccc------ccceEEEEeC-CeEeEEecC
Q 032841 89 ---RVNSRFKLT------GVPTLFRWEN-DIVSGRLED 116 (132)
Q Consensus 89 ---~~~~~~~v~------~vPt~~~~~~-g~~~~~~~~ 116 (132)
.+++.||+. .+|+.+++++ |+......+
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 245678875 4689999985 665554443
No 151
>PRK13189 peroxiredoxin; Provisional
Probab=98.14 E-value=7.1e-06 Score=59.77 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCeEE-EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccCC-------CCCc-----
Q 032841 26 KNKANF-ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRNP-------QHPF----- 88 (132)
Q Consensus 26 ~~~~v~-v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~~-------~~~~----- 88 (132)
.++.++ +.|+++ ||+.|....+.|.++.+++. .++.++.|+++... .|... .-.|
T Consensus 34 ~Gk~vvL~f~pa~--------fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD 105 (222)
T PRK13189 34 KGKWFVLFSHPAD--------FTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIAD 105 (222)
T ss_pred CCCeEEEEEeCCC--------CCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEc
Confidence 466454 577888 99999999999999988875 57889999987633 23210 1122
Q ss_pred ---ccccccccc-------ccceEEEEe-CCeEeEEec
Q 032841 89 ---RVNSRFKLT-------GVPTLFRWE-NDIVSGRLE 115 (132)
Q Consensus 89 ---~~~~~~~v~-------~vPt~~~~~-~g~~~~~~~ 115 (132)
.+++.||+. ++|+.++++ +|.......
T Consensus 106 ~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 106 DRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred CccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 235677865 579999998 466544433
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.12 E-value=1.1e-05 Score=47.45 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=42.6
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
++.|+++ |||+|+++.+.+.+. ++.+..++++..... ... +.+..++.++|++++ +|
T Consensus 2 v~l~~~~--------~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~---~~~--~~~~~~~~~vP~i~~--~~-- 58 (73)
T cd02976 2 VTVYTKP--------DCPYCKATKRFLDER------GIPFEEVDVDEDPEA---LEE--LKKLNGYRSVPVVVI--GD-- 58 (73)
T ss_pred EEEEeCC--------CChhHHHHHHHHHHC------CCCeEEEeCCCCHHH---HHH--HHHHcCCcccCEEEE--CC--
Confidence 4566665 999999998888762 456667777653310 000 112236889999975 44
Q ss_pred eEEecCcchhcHHHHHHhh
Q 032841 111 SGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l 129 (132)
..+.|.+ .+.|+++|
T Consensus 59 -~~i~g~~---~~~l~~~~ 73 (73)
T cd02976 59 -EHLSGFR---PDKLRALL 73 (73)
T ss_pred -EEEecCC---HHHHHhhC
Confidence 3444543 34565543
No 153
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.8e-07 Score=64.19 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.++.+++.|||. ||.+|..+...+..+++.. .++.+++++.+..+ + ++..+.+.++|+++++
T Consensus 16 ~~~~~~~~f~a~--------wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~---e------is~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAI--------WAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP---E------ISNLIAVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhh--------hhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh---H------HHHHHHHhcCceeeee
Confidence 678999999998 9999999999999998877 58999999998876 3 7778999999999999
Q ss_pred eCCeEeEEecCcc
Q 032841 106 ENDIVSGRLEDHE 118 (132)
Q Consensus 106 ~~g~~~~~~~~~~ 118 (132)
..|+.+.++.+..
T Consensus 78 ~~~~~v~~l~~~~ 90 (227)
T KOG0911|consen 78 FLGEKVDRLSGAD 90 (227)
T ss_pred ecchhhhhhhccC
Confidence 9999888888873
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.10 E-value=3.4e-06 Score=48.76 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=36.6
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
+|||+|++++..|++. ++.+-.+|++..+..++ .+.+..+..++|++++ +|+
T Consensus 7 ~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~-----~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEARE-----ELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp TTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHH-----HHHHHHSSSSSSEEEE--TTE
T ss_pred CCCcCHHHHHHHHHHc------CCeeeEcccccchhHHH-----HHHHHcCCCccCEEEE--CCE
Confidence 4999999999988553 47788889877642111 0223349999999986 554
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.05 E-value=1.2e-05 Score=49.99 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=36.4
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccc--ccccceEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFK--LTGVPTLFRWEND 108 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--v~~vPt~~~~~~g 108 (132)
||||+|++++..|+++..+.+ ++.+..+|++.... . ... +...++ ..++|++++ +|
T Consensus 8 ~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~--~-~~~--l~~~~g~~~~tVP~ifi--~g 65 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGI--S-KAD--LEKTVGKPVETVPQIFV--DE 65 (86)
T ss_pred CCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHH--H-HHH--HHHHhCCCCCCcCeEEE--CC
Confidence 599999999999999865543 57777888764220 0 000 222334 479999954 55
No 156
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.98 E-value=5.3e-05 Score=52.58 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCCe-EEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccccc--ccceE
Q 032841 26 KNKA-NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLT--GVPTL 102 (132)
Q Consensus 26 ~~~~-v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~vPt~ 102 (132)
.+.+ +++.|... -......+...++++++++.+++.|+.+|.+... . ....+++. .+|++
T Consensus 93 ~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~---~------~~~~~~i~~~~~P~~ 155 (184)
T PF13848_consen 93 SPKPPVLILFDNK--------DNESTEAFKKELQDIAKKFKGKINFVYVDADDFP---R------LLKYFGIDEDDLPAL 155 (184)
T ss_dssp TSSEEEEEEEETT--------THHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH---H------HHHHTTTTTSSSSEE
T ss_pred CCCceEEEEEEcC--------CchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH---H------HHHHcCCCCccCCEE
Confidence 5655 66666544 5777889999999999999888999999988443 3 55688988 89999
Q ss_pred EEEeC-CeEeEEecCcchhcHHHHHHhhhc
Q 032841 103 FRWEN-DIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 103 ~~~~~-g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++++. +.. ..+...+....+.|.+|+++
T Consensus 156 vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 156 VIFDSNKGK-YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred EEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence 99983 322 22222446778899999863
No 157
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.97 E-value=2.9e-05 Score=46.40 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHH
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHK 124 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~ 124 (132)
+|||.|.+.+..|++. ++.+..+|++....... +....+..++|.++ -+|+.+ .| .+.
T Consensus 9 ~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~------~~~~~g~~~vP~if--i~g~~i---gg-----~~~ 66 (72)
T cd03029 9 PGCPFCARAKAALQEN------GISYEEIPLGKDITGRS------LRAVTGAMTVPQVF--IDGELI---GG-----SDD 66 (72)
T ss_pred CCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHH------HHHHhCCCCcCeEE--ECCEEE---eC-----HHH
Confidence 3999999998888753 46677777765431110 22335788999973 356433 22 345
Q ss_pred HHHhhh
Q 032841 125 IKALLS 130 (132)
Q Consensus 125 l~~~l~ 130 (132)
|.+||+
T Consensus 67 l~~~l~ 72 (72)
T cd03029 67 LEKYFA 72 (72)
T ss_pred HHHHhC
Confidence 666653
No 158
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.94 E-value=2.4e-05 Score=56.14 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=54.0
Q ss_pred Ce-EEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc---CccC-------CCCCc-------
Q 032841 28 KA-NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP---TWRN-------PQHPF------- 88 (132)
Q Consensus 28 ~~-v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~---~~~~-------~~~~~------- 88 (132)
+. +++.|+++ |||.|....+.+.++.+++. .++.++.|+++... .|.. ...+|
T Consensus 26 k~vvlf~~pa~--------~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 26 SWGILFSHPAD--------FTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred CEEEEEEecCC--------CCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECch
Confidence 54 45578888 99999999999999988875 57899999987632 1221 11122
Q ss_pred -ccccccccc----c----cceEEEEe-CCeEeEEecC
Q 032841 89 -RVNSRFKLT----G----VPTLFRWE-NDIVSGRLED 116 (132)
Q Consensus 89 -~~~~~~~v~----~----vPt~~~~~-~g~~~~~~~~ 116 (132)
.++..||+. + +|+.++++ +|+......+
T Consensus 98 ~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 98 REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEec
Confidence 235678765 2 45677887 4665555444
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.93 E-value=2.2e-05 Score=47.67 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc-CccCCCCCccccccccccccceEEEEeCCe
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP-TWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
++.|+++ |||+|+.+.+.+.++.. ...++.++.+... .... .+.+..++.++|++ |.+|+
T Consensus 2 v~~y~~~--------~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~-----~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKS--------YCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQD-----YLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcC--------CCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHH-----HHHHHhCCCCCCeE--EECCE
Confidence 3566665 99999999999998743 3556666665431 0000 02245678899996 34564
Q ss_pred E
Q 032841 110 V 110 (132)
Q Consensus 110 ~ 110 (132)
.
T Consensus 63 ~ 63 (82)
T cd03419 63 F 63 (82)
T ss_pred E
Confidence 3
No 160
>PHA03050 glutaredoxin; Provisional
Probab=97.93 E-value=8.4e-06 Score=53.02 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=37.5
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc---CccCCCCCccccccccccccceEEEEeC
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP---TWRNPQHPFRVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~v~~vPt~~~~~~ 107 (132)
++.|+.+ |||+|++....|.+..-..+ .+-.+|++... ++.+ .+.+..|.++||++++ +
T Consensus 15 V~vys~~--------~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~-----~l~~~tG~~tVP~IfI--~ 76 (108)
T PHA03050 15 VTIFVKF--------TCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRD-----YFEQITGGRTVPRIFF--G 76 (108)
T ss_pred EEEEECC--------CChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHH-----HHHHHcCCCCcCEEEE--C
Confidence 5667775 99999999999887632221 34455655422 1111 0223457789999844 5
Q ss_pred CeEe
Q 032841 108 DIVS 111 (132)
Q Consensus 108 g~~~ 111 (132)
|+.+
T Consensus 77 g~~i 80 (108)
T PHA03050 77 KTSI 80 (108)
T ss_pred CEEE
Confidence 6433
No 161
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.92 E-value=1.6e-05 Score=46.45 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=35.5
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSG 112 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~ 112 (132)
+|||+|+.+.+.+.+.. +.+..+|+....+.++ .+....+..++|+++ .+|+.++
T Consensus 8 ~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~-----~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 8 STCPYCKRAKRLLESLG------IEFEEIDILEDGELRE-----ELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred CCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHH-----HHHHHhCCCCcCEEE--ECCEEEe
Confidence 39999999999988763 6677888876542111 022335667888774 3664443
No 162
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.91 E-value=3.7e-05 Score=47.37 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHH
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHK 124 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~ 124 (132)
+|||+|++++..|.+ .++.|-.+|++..+++.+ .....+..++|++++ ++. .+.|. ..+.
T Consensus 9 ~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~------~~~~~g~~~vPvv~i--~~~---~~~Gf---~~~~ 68 (81)
T PRK10329 9 NDCVQCHATKRAMES------RGFDFEMINVDRVPEAAE------TLRAQGFRQLPVVIA--GDL---SWSGF---RPDM 68 (81)
T ss_pred CCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHH------HHHHcCCCCcCEEEE--CCE---EEecC---CHHH
Confidence 499999999988855 257888889887552211 112357789999965 442 34453 3445
Q ss_pred HHHhh
Q 032841 125 IKALL 129 (132)
Q Consensus 125 l~~~l 129 (132)
|++++
T Consensus 69 l~~~~ 73 (81)
T PRK10329 69 INRLH 73 (81)
T ss_pred HHHHH
Confidence 55544
No 163
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.89 E-value=6.5e-06 Score=59.87 Aligned_cols=71 Identities=24% Similarity=0.440 Sum_probs=56.9
Q ss_pred eEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeC
Q 032841 29 ANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 29 ~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~ 107 (132)
-.++.|+|+ |||.|....|.++.++.-.. =.+.+.+||+..++ . +.-+|-+...||++..++
T Consensus 41 ewmi~~~ap--------~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np-----g----LsGRF~vtaLptIYHvkD 103 (248)
T KOG0913|consen 41 EWMIEFGAP--------WCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP-----G----LSGRFLVTALPTIYHVKD 103 (248)
T ss_pred HHHHHhcCC--------CCccccchHHHHhccCCccCCCceeEEEEEEEecc-----c----cceeeEEEecceEEEeec
Confidence 457899996 99999999999999876432 36889999988766 2 556899999999999998
Q ss_pred CeEeEEecCc
Q 032841 108 DIVSGRLEDH 117 (132)
Q Consensus 108 g~~~~~~~~~ 117 (132)
|.. .|+.|.
T Consensus 104 GeF-rrysga 112 (248)
T KOG0913|consen 104 GEF-RRYSGA 112 (248)
T ss_pred ccc-ccccCc
Confidence 853 466665
No 164
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=0.0001 Score=60.21 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=57.2
Q ss_pred CeEEE-EEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEe
Q 032841 28 KANFI-LFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 28 ~~v~v-~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~ 106 (132)
+++-| .|.+. |||.|......+++++...+ ++..-.+|....+ + ++++|+|.++|++++
T Consensus 476 ~~~~i~v~~~~--------~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~---~------~~~~~~v~~vP~~~i-- 535 (555)
T TIGR03143 476 KPVNIKIGVSL--------SCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFP---D------LKDEYGIMSVPAIVV-- 535 (555)
T ss_pred CCeEEEEEECC--------CCCCcHHHHHHHHHHHHhCC-CceEEEEECcccH---H------HHHhCCceecCEEEE--
Confidence 45544 55665 99999999999999998876 7888888887776 3 667899999999987
Q ss_pred CCeEeEEecCcchhcHHHHHHhh
Q 032841 107 NDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+|+.+ +.|.. ..+.|.++|
T Consensus 536 ~~~~~--~~G~~--~~~~~~~~~ 554 (555)
T TIGR03143 536 DDQQV--YFGKK--TIEEMLELI 554 (555)
T ss_pred CCEEE--EeeCC--CHHHHHHhh
Confidence 55433 33432 455565554
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.87 E-value=2.3e-05 Score=47.88 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=38.0
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
++.|+.+ |||.|++.+..|++. ++.+..+|++.... ... +....+..++|.+++ +|+
T Consensus 10 V~ly~~~--------~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~----~~~--~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 10 VVVFTKP--------GCPFCAKAKATLKEK------GYDFEEIPLGNDAR----GRS--LRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred EEEEECC--------CCHhHHHHHHHHHHc------CCCcEEEECCCChH----HHH--HHHHHCCCCcCeEEE--CCE
Confidence 5566665 999999999988753 46666778765431 001 223467899999854 664
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.86 E-value=9.3e-06 Score=51.96 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=36.2
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
++.|..+ |||.|++++..|.+. ++.+-.+|++..+.-.+... .+....|.+++|.++ -+|+.
T Consensus 10 Vvvysk~--------~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~--~l~~~tg~~tvP~Vf--i~g~~ 71 (99)
T TIGR02189 10 VVIFSRS--------SCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIEN--ALSRLGCSPAVPAVF--VGGKL 71 (99)
T ss_pred EEEEECC--------CCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHH--HHHHhcCCCCcCeEE--ECCEE
Confidence 4566665 999999999877765 24445666665431000000 022234678999973 35643
Q ss_pred e
Q 032841 111 S 111 (132)
Q Consensus 111 ~ 111 (132)
+
T Consensus 72 i 72 (99)
T TIGR02189 72 V 72 (99)
T ss_pred E
Confidence 3
No 167
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.85 E-value=5.9e-06 Score=50.23 Aligned_cols=52 Identities=25% Similarity=0.571 Sum_probs=34.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
||||+|.+++..+++. ++.+-.+|++..+.+.+ .+....+..++|++++ +|+
T Consensus 7 ~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~-----~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 7 PYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRD-----EMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHH-----HHHHHhCCCCcCEEEE--CCE
Confidence 4999999999999863 35566677766543222 0223457789999743 564
No 168
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0002 Score=47.52 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=62.5
Q ss_pred cchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccc
Q 032841 11 SSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRV 90 (132)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 90 (132)
.+-.++-++++. .+.+.++|-|.-+ |-|-|..+...+.+++....+-+.++-||+++.+ + .
T Consensus 9 ~s~~~VdqaI~~--t~~rlvViRFGr~--------~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~---~------~ 69 (142)
T KOG3414|consen 9 HSGWEVDQAILS--TEERLVVIRFGRD--------WDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP---D------F 69 (142)
T ss_pred ccHHHHHHHHhc--ccceEEEEEecCC--------CCchHhhHHHHHHHHHHHHhhceEEEEEecchhh---h------h
Confidence 355555343443 3678899999665 9999999999999999988766788889998766 2 4
Q ss_pred cccccccccceEEEEeCCeE
Q 032841 91 NSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~~g~~ 110 (132)
.+-|++...||+++|-+++-
T Consensus 70 ~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 70 VKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred hhhhcccCCceEEEEEcCce
Confidence 46799999999998877654
No 169
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.84 E-value=6.6e-05 Score=54.21 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
+.-.++|..|-+ --+-|-++...+.-++++|| .++|+++-..... ...+|...++||+++|
T Consensus 158 ks~~i~VhIYEd--------gi~gcealn~~~~cLAAeyP-~vKFckikss~~g----------as~~F~~n~lP~LliY 218 (273)
T KOG3171|consen 158 KSTTIVVHIYED--------GIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNTG----------ASDRFSLNVLPTLLIY 218 (273)
T ss_pred ceEEEEEEEecC--------CCchHHHHhhhHHHhhccCC-ceeEEEeeecccc----------chhhhcccCCceEEEe
Confidence 345677788886 88889999999999999998 7899988764433 4468999999999999
Q ss_pred eCCeEeEEecCc-----chhcHHHHHHhhhc
Q 032841 106 ENDIVSGRLEDH-----EAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~g~~~~~~~~~-----~~~~~~~l~~~l~~ 131 (132)
++|+.++.++.. +.+....|.+||++
T Consensus 219 kgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 219 KGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999888776543 34556667788764
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.79 E-value=9.4e-05 Score=52.62 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=49.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC--C--Cc---------------CccC---
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG--D--RP---------------TWRN--- 83 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~--~--~~---------------~~~~--- 83 (132)
+++..++.|+- |.||+|+++.+.+.+ ..+++.+..+.+. . .. .|.+
T Consensus 76 ~~~~~i~~f~D--------~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~ 143 (197)
T cd03020 76 NGKRVVYVFTD--------PDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMS 143 (197)
T ss_pred CCCEEEEEEEC--------CCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHh
Confidence 34666666666 599999999999887 2234444444332 1 10 1110
Q ss_pred --C----CC--------CccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 84 --P----QH--------PFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 84 --~----~~--------~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
. .. ...++.++||+++||++ +.+|.. +.|.. ..+.|+++|
T Consensus 144 ~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~--~~~~l~~~L 197 (197)
T cd03020 144 GGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAP--PAAQLEALL 197 (197)
T ss_pred CCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCC--CHHHHHhhC
Confidence 0 00 01245789999999997 777743 45543 245566554
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.75 E-value=2.8e-05 Score=46.57 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++||.|++.+..|++. ++.+-.+|+++.+...+ .....|..++|++++
T Consensus 7 ~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~------~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 7 NNCVQCKMTKKALEEH------GIAFEEINIDEQPEAID------YVKAQGFRQVPVIVA 54 (72)
T ss_pred CCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHH------HHHHcCCcccCEEEE
Confidence 5999999999988752 56777788876441111 112358889999754
No 172
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.71 E-value=0.00014 Score=53.28 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=54.4
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC---Cc--------CccCC----------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD---RP--------TWRNP---------- 84 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~---~~--------~~~~~---------- 84 (132)
+++..++.|+- |-||.|+++.+.+.++.+ .++.+..+.... .+ -|...
T Consensus 106 ~~k~~I~vFtD--------p~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~ 174 (232)
T PRK10877 106 QEKHVITVFTD--------ITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAM 174 (232)
T ss_pred CCCEEEEEEEC--------CCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666666655 599999999999888754 235555444321 01 12110
Q ss_pred ------C--------CCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhhc
Q 032841 85 ------Q--------HPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 85 ------~--------~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
. ...+++.++||+|+||++ +.+|+ .+.|. ...+.|+++|++
T Consensus 175 ~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~---~~~G~--~~~~~L~~~l~~ 229 (232)
T PRK10877 175 KGKDVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGT---LVPGY--QGPKEMKAFLDE 229 (232)
T ss_pred cCCCCCcccccchHHHhHHHHHHcCCccccEEE-EcCCe---EeeCC--CCHHHHHHHHHH
Confidence 0 011346789999999998 66774 34554 345567777763
No 173
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.62 E-value=0.00042 Score=56.15 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred CeE-EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEe
Q 032841 28 KAN-FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 28 ~~v-~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~ 106 (132)
+++ +..|.+. .||+|......+++++...+ ++.+-.+|....+ + ++.+|++.++|++++
T Consensus 116 ~~~~i~~fv~~--------~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~---~------~~~~~~v~~VP~~~i-- 175 (517)
T PRK15317 116 GDFHFETYVSL--------SCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQ---D------EVEARNIMAVPTVFL-- 175 (517)
T ss_pred CCeEEEEEEcC--------CCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCH---h------HHHhcCCcccCEEEE--
Confidence 344 5566664 99999999999999988766 7888888887766 3 667999999999976
Q ss_pred CCe
Q 032841 107 NDI 109 (132)
Q Consensus 107 ~g~ 109 (132)
+|+
T Consensus 176 ~~~ 178 (517)
T PRK15317 176 NGE 178 (517)
T ss_pred CCc
Confidence 454
No 174
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.61 E-value=4.3e-05 Score=48.67 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=33.8
Q ss_pred CCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 44 LSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 44 ~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
.||||+|+++...|.+. ++.+..+|+++.+...+ .+....|..++|.+++ +|+
T Consensus 24 ~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~-----~l~~~tg~~tvP~vfi--~g~ 76 (97)
T TIGR00365 24 FPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQ-----GIKEYSNWPTIPQLYV--KGE 76 (97)
T ss_pred CCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHH-----HHHHHhCCCCCCEEEE--CCE
Confidence 46999999999988775 35567788865431111 0223346678898743 564
No 175
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.61 E-value=0.00016 Score=46.86 Aligned_cols=87 Identities=15% Similarity=0.271 Sum_probs=56.1
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
..++++++. .+...+++|.++ +. -++-|....=++-++.+.+++.....-+.-.... .
T Consensus 16 ~~~ld~~l~-------~~~~~vlf~~gD--p~----r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~---~------ 73 (107)
T PF07449_consen 16 ADTLDAFLA-------APGDAVLFFAGD--PA----RFPETADVAVILPELVKAFPGRFRGAVVARAAER---A------ 73 (107)
T ss_dssp CCCHHHHHH-------CCSCEEEEESS---TT----TSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH---H------
T ss_pred hhhHHHHHh-------CCCcEEEEECCC--CC----cCcccccceeEcHHHHHhhhCccceEEECchhHH---H------
Confidence 446666644 445555555543 32 3455555555566666667766666666633322 2
Q ss_pred ccccccccccceEEEEeCCeEeEEecCcc
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDHE 118 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~~ 118 (132)
+..+||+...|+++++++|+.++.+.|..
T Consensus 74 L~~r~gv~~~PaLvf~R~g~~lG~i~gi~ 102 (107)
T PF07449_consen 74 LAARFGVRRWPALVFFRDGRYLGAIEGIR 102 (107)
T ss_dssp HHHHHT-TSSSEEEEEETTEEEEEEESSS
T ss_pred HHHHhCCccCCeEEEEECCEEEEEecCee
Confidence 67899999999999999999999988864
No 176
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.56 E-value=0.00013 Score=45.65 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=34.6
Q ss_pred CCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 43 SLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 43 ~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
+.||||+|++....|.+. ++.+..+|+....+..+ .+.+..|-.++|++++ +|+
T Consensus 19 ~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~-----~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 19 EEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQ-----GLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred CCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHH-----HHHHHhCCCCCCEEEE--CCE
Confidence 346999999999888775 35567777765432111 1223457788999733 564
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.54 E-value=0.00013 Score=43.64 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=32.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccccc-ccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLT-GVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~vPt~~~~~~g~ 109 (132)
||||.|++++..|++. ++.+-.+|++..++..+ . +....+.. ++|+++ -+|+
T Consensus 8 ~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~---~--~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 8 PNCPYCVRAKALLDKK------GVDYEEIDVDGDPALRE---E--MINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred CCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHH---H--HHHHhCCCCccCEEE--ECCE
Confidence 4999999999988763 46677778766431111 0 22234655 899874 3554
No 178
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.51 E-value=0.00017 Score=44.26 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCc--------------cCCC---------CCccccccccccccce
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTW--------------RNPQ---------HPFRVNSRFKLTGVPT 101 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~---------~~~~~~~~~~v~~vPt 101 (132)
+.||.|..+.+.+.++....++++.+....+.-...- .... .....+.++|+.|+||
T Consensus 7 ~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~g~Pt 86 (98)
T cd02972 7 PLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGVTGTPT 86 (98)
T ss_pred CCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 5999999999999999766666777776665332210 0000 0112356789999999
Q ss_pred EEEEe
Q 032841 102 LFRWE 106 (132)
Q Consensus 102 ~~~~~ 106 (132)
+++.+
T Consensus 87 ~v~~~ 91 (98)
T cd02972 87 FVVNG 91 (98)
T ss_pred EEECC
Confidence 98865
No 179
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.49 E-value=0.00043 Score=44.73 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=58.0
Q ss_pred chHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccc
Q 032841 12 SFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVN 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 91 (132)
+.+++ +++++. ...++++|+=.++ .||-.+.....+++.....++.+.++.+++-+.....+ .++
T Consensus 6 t~eql-~~i~~~-S~~~~~~iFKHSt--------~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn-----~IA 70 (105)
T PF11009_consen 6 TEEQL-EEILEE-SKEKPVLIFKHST--------RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSN-----AIA 70 (105)
T ss_dssp SHHHH-HHHHHH----SEEEEEEE-T--------T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHH-----HHH
T ss_pred CHHHH-HHHHHh-cccCcEEEEEeCC--------CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHH-----HHH
Confidence 44444 334432 2466766666776 99999999999999998877569999999865442111 167
Q ss_pred cccccc-ccceEEEEeCCeEeEEecCcc
Q 032841 92 SRFKLT-GVPTLFRWENDIVSGRLEDHE 118 (132)
Q Consensus 92 ~~~~v~-~vPt~~~~~~g~~~~~~~~~~ 118 (132)
.+|||+ .-|-++++++|+.+..-...+
T Consensus 71 e~~~V~HeSPQ~ili~~g~~v~~aSH~~ 98 (105)
T PF11009_consen 71 EDFGVKHESPQVILIKNGKVVWHASHWD 98 (105)
T ss_dssp HHHT----SSEEEEEETTEEEEEEEGGG
T ss_pred HHhCCCcCCCcEEEEECCEEEEECcccc
Confidence 889998 589999999999887665543
No 180
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.49 E-value=0.0017 Score=43.46 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=51.8
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccc-eEE
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVP-TLF 103 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vP-t~~ 103 (132)
..++.++|-|.-+ |-|.|.++...+.+++.+...-+.++.||+++.+ + ....|.+. .| |++
T Consensus 18 e~drvvViRFG~d--------~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---d------fn~~yel~-dP~tvm 79 (133)
T PF02966_consen 18 EEDRVVVIRFGRD--------WDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---D------FNQMYELY-DPCTVM 79 (133)
T ss_dssp -SSSEEEEEEE-T--------TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---C------CHHHTTS--SSEEEE
T ss_pred cCceEEEEEeCCC--------CCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---h------hhcccccC-CCeEEE
Confidence 3688999999776 9999999999999999988766788999998876 2 33467777 77 456
Q ss_pred EEeCCeE
Q 032841 104 RWENDIV 110 (132)
Q Consensus 104 ~~~~g~~ 110 (132)
+|-+++.
T Consensus 80 FF~rnkh 86 (133)
T PF02966_consen 80 FFFRNKH 86 (133)
T ss_dssp EEETTEE
T ss_pred EEecCeE
Confidence 6645554
No 181
>PRK10638 glutaredoxin 3; Provisional
Probab=97.42 E-value=0.0001 Score=45.28 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=33.7
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS 111 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~ 111 (132)
+|||+|++..-.+++. ++.+..+|++...+.. .. +.+..+..++|++++ +|+.+
T Consensus 10 ~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~---~~--l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 10 ATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKR---EE--MIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred CCChhHHHHHHHHHHc------CCCcEEEECCCCHHHH---HH--HHHHhCCCCcCEEEE--CCEEE
Confidence 4999999999988864 3556667776543110 00 223456778998743 56433
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.40 E-value=0.00028 Score=42.18 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
||||.|+++...|++. ++.+..+|++..+.-.. . +.+..+-.++|++++ +|+.
T Consensus 9 ~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~---e--l~~~~g~~~vP~v~i--~~~~ 61 (73)
T cd03027 9 LGCEDCTAVRLFLREK------GLPYVEINIDIFPERKA---E--LEERTGSSVVPQIFF--NEKL 61 (73)
T ss_pred CCChhHHHHHHHHHHC------CCceEEEECCCCHHHHH---H--HHHHhCCCCcCEEEE--CCEE
Confidence 3999999999988873 46677778866441000 0 223346678899844 5543
No 183
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00027 Score=43.41 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=32.6
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc--CccCCCCCccccccc-cccccceEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP--TWRNPQHPFRVNSRF-KLTGVPTLFR 104 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~-~v~~vPt~~~ 104 (132)
||||+|++.+..|.+. ++.+..++++... +-.+ ...+. |.+++|++++
T Consensus 9 ~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~------~~~~~~g~~tvP~I~i 59 (80)
T COG0695 9 PGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEARE------MVKRGKGQRTVPQIFI 59 (80)
T ss_pred CCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHH------HHHHhCCCCCcCEEEE
Confidence 5999999999888842 5667777776644 1111 12233 7899999866
No 184
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.34 E-value=0.00015 Score=44.54 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHH
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHK 124 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~ 124 (132)
|-|+-|..+...+..+.... .+.+-.||+++.++ +..+|+. .||.+.+-+.++...........+++.
T Consensus 8 ~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~---------l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 8 PGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE---------LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH---------HHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred CCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH---------HHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 69999999999999976554 48899999987664 3347885 799976544211110111123356777
Q ss_pred HHHhhh
Q 032841 125 IKALLS 130 (132)
Q Consensus 125 l~~~l~ 130 (132)
|+++|+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887774
No 185
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.33 E-value=0.0015 Score=42.56 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=58.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHh---CCCCcEEEEEEeCCCcCccCCCCCccccccccccc--cc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEA---SPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTG--VP 100 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--vP 100 (132)
++.+..+.|+ + -..=....+.+.+++++ +.+++.|+.+|.+... . ....||++. +|
T Consensus 15 ~~~~~~~l~f-~---------~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~------~~~~fgl~~~~~P 75 (111)
T cd03072 15 EGLPFLILFH-D---------KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---H------PLLHLGKTPADLP 75 (111)
T ss_pred CCCCeEEEEe-c---------chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---h------HHHHcCCCHhHCC
Confidence 5555555565 3 11235678889999999 8888999999998765 2 456799987 99
Q ss_pred eEEEEeCCeEeEEec-CcchhcHHHHHHhhhc
Q 032841 101 TLFRWENDIVSGRLE-DHEAHLEHKIKALLSA 131 (132)
Q Consensus 101 t~~~~~~g~~~~~~~-~~~~~~~~~l~~~l~~ 131 (132)
.+.+...... .++. ..+....+.|++|+++
T Consensus 76 ~i~i~~~~~~-~Ky~~~~~~~t~~~i~~Fv~~ 106 (111)
T cd03072 76 VIAIDSFRHM-YLFPDFEDVYVPGKLKQFVLD 106 (111)
T ss_pred EEEEEcchhc-CcCCCCccccCHHHHHHHHHH
Confidence 9988875321 2333 2334556677777763
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=97.27 E-value=0.0003 Score=46.25 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS 111 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~ 111 (132)
||||.|+++...|.... +.+..+|++...+.++ .+...-|..++|.+++ +|+-+
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~-----~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRA-----ELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHH-----HHHHHhCCCCCCeEEE--CCEEE
Confidence 59999999999887762 3344556655431111 0212235566776644 66433
No 187
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.25 E-value=0.0025 Score=51.70 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=46.2
Q ss_pred EEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 30 NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 30 v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
-+..|.+. -||+|......+++++...+ ++..-.+|....+ + ++.+|++.++|++++
T Consensus 120 ~i~~f~~~--------~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~---~------~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 120 HFETYVSL--------TCQNCPDVVQALNQMALLNP-NISHTMIDGALFQ---D------EVEALGIQGVPAVFL 176 (515)
T ss_pred EEEEEEeC--------CCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCH---H------HHHhcCCcccCEEEE
Confidence 35566664 99999999999999988776 7887778777766 3 667999999999976
No 188
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.22 E-value=0.0011 Score=44.39 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=30.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
+++..++.|+. ++||+|+.+.|.+.++..+++ ++.++..++
T Consensus 4 ~a~~~i~~f~D--------~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFD--------YNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEEC--------CCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 35666666665 599999999999999887775 566665554
No 189
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.17 E-value=0.0017 Score=48.12 Aligned_cols=39 Identities=5% Similarity=0.157 Sum_probs=27.1
Q ss_pred ccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
++.++||+|+||+++-++.+.+..+.|.. ..+.|.+.|.
T Consensus 211 l~~~lGv~GTPaiv~~d~~G~~~~v~G~~--~~~~L~~~l~ 249 (251)
T PRK11657 211 LMDDLGANATPAIYYMDKDGTLQQVVGLP--DPAQLAEIMG 249 (251)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEEecCCC--CHHHHHHHhC
Confidence 45679999999999987534444666763 3456766664
No 190
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.14 E-value=0.0013 Score=44.01 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=51.0
Q ss_pred HhhhHHHHHHHHhCCCC-cEEEEEEeCCCcCccCCCCCcccccccccc--ccceEEEEeCCeEeEEec-CcchhcHHHHH
Q 032841 51 VRAEPVIYKTLEASPDD-IALLQAYVGDRPTWRNPQHPFRVNSRFKLT--GVPTLFRWENDIVSGRLE-DHEAHLEHKIK 126 (132)
Q Consensus 51 ~~~~p~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~vPt~~~~~~g~~~~~~~-~~~~~~~~~l~ 126 (132)
......+.++++++.++ +.|+.+|.+... . ..+.|||+ ++|++++++..+. ++. ..+....+.|+
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~---~------~~~~fgl~~~~~P~v~i~~~~~~--KY~~~~~~~t~e~i~ 108 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQL---D------LEEALNIGGFGYPAMVAINFRKM--KFATLKGSFSEDGIN 108 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccH---H------HHHHcCCCccCCCEEEEEecccC--ccccccCccCHHHHH
Confidence 45678899999999877 999999998765 2 45679985 4999999987432 333 33445667788
Q ss_pred Hhhhc
Q 032841 127 ALLSA 131 (132)
Q Consensus 127 ~~l~~ 131 (132)
+|+++
T Consensus 109 ~Fv~~ 113 (130)
T cd02983 109 EFLRE 113 (130)
T ss_pred HHHHH
Confidence 88763
No 191
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00096 Score=43.11 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=36.8
Q ss_pred EEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 31 FILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 31 ~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
+|.|.-+ |||.|+++...|.+ .+.+..++.+|-.... .+ -+-.+.+--+-+++|.+++ +|+
T Consensus 16 VVifSKs--------~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g--~e--iq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 16 VVIFSKS--------SCPYCHRAKELLSD----LGVNPKVVELDEDEDG--SE--IQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred EEEEECC--------cCchHHHHHHHHHh----CCCCCEEEEccCCCCc--HH--HHHHHHHhcCCCCCCEEEE--CCE
Confidence 5778777 99999997777776 4445667777654322 11 0001222334568998766 553
No 192
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.05 E-value=0.0032 Score=41.05 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=52.1
Q ss_pred HHhhhHHHHHHHHhCC-CCcEEEEEEeCCCcCccCCCCCccccccccccc----cceEEEEeCCeEeEEecCcchh-cHH
Q 032841 50 CVRAEPVIYKTLEASP-DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTG----VPTLFRWENDIVSGRLEDHEAH-LEH 123 (132)
Q Consensus 50 C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----vPt~~~~~~g~~~~~~~~~~~~-~~~ 123 (132)
=......+.++++++. +++.|+.+|.+... . ..+.||++. +|++.+++.+. .++.-.+.. +.+
T Consensus 33 ~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~------~l~~fgl~~~~~~~P~~~i~~~~~--~KY~~~~~~~t~e 101 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---H------ELEEFGLDFSGGEKPVVAIRTAKG--KKYVMEEEFSDVD 101 (111)
T ss_pred HHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---H------HHHHcCCCcccCCCCEEEEEeCCC--CccCCCcccCCHH
Confidence 4567888999999999 69999999987654 1 446789884 99999987533 233322334 678
Q ss_pred HHHHhhhc
Q 032841 124 KIKALLSA 131 (132)
Q Consensus 124 ~l~~~l~~ 131 (132)
.|++|++.
T Consensus 102 ~i~~F~~~ 109 (111)
T cd03073 102 ALEEFLED 109 (111)
T ss_pred HHHHHHHH
Confidence 89999874
No 193
>PTZ00062 glutaredoxin; Provisional
Probab=97.01 E-value=0.00046 Score=49.75 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
+..+|+|+--++. -.||||.|+++...|.+. ++.+..+|+.+..+.++ .+.+.-+..++|.+++
T Consensus 111 ~~~~Vvvf~Kg~~----~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~-----~l~~~sg~~TvPqVfI- 174 (204)
T PTZ00062 111 RNHKILLFMKGSK----TFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLRE-----ELKVYSNWPTYPQLYV- 174 (204)
T ss_pred hcCCEEEEEccCC----CCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHH-----HHHHHhCCCCCCeEEE-
Confidence 3456656555421 125999999998888864 46677788875442111 0222335567787754
Q ss_pred eCCeE
Q 032841 106 ENDIV 110 (132)
Q Consensus 106 ~~g~~ 110 (132)
+|+.
T Consensus 175 -~G~~ 178 (204)
T PTZ00062 175 -NGEL 178 (204)
T ss_pred -CCEE
Confidence 5643
No 194
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.91 E-value=0.012 Score=42.39 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 24 APKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 24 ~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
+..+-.|+|..|.. .-|-|+-+...++.++-+++ .++||++=....- ..|-=...||++
T Consensus 108 As~gvwVvvhLy~~--------gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~cI------------pNYPe~nlPTl~ 166 (240)
T KOG3170|consen 108 ASEGVWVVVHLYKQ--------GVPLCALLSHHLQSLACKFP-QIKFVKIPATTCI------------PNYPESNLPTLL 166 (240)
T ss_pred ccCccEEEEEeecc--------ccHHHHHHHHHHHHHhhcCC-cceEEeccccccc------------CCCcccCCCeEE
Confidence 35788999999998 89999999999999999998 7999988654432 346667899999
Q ss_pred EEeCCeEeEEecCc-----chhcHHHHHHhh
Q 032841 104 RWENDIVSGRLEDH-----EAHLEHKIKALL 129 (132)
Q Consensus 104 ~~~~g~~~~~~~~~-----~~~~~~~l~~~l 129 (132)
+|..|...+.+.|. .-...+.+..++
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L 197 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFL 197 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHH
Confidence 99988765444432 223445555554
No 195
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.82 E-value=0.0026 Score=50.37 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccC---CCCCccccccccccccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRN---PQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
||||+|++++..|.+. ++.+..+|+++.+...+ ......+....|.+++|++++ +|+
T Consensus 10 ~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 10 TNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred CCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 4999999999888774 46777888875441100 000000112357889999965 453
No 196
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.76 E-value=0.012 Score=36.54 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
..++++|-|+.+ +|+ .....+.++++.+.+.+.|+.+.- .. +++.++++. |++++|
T Consensus 16 ~~~~~vvg~f~~--------~~~---~~~~~f~~~A~~~r~~~~F~~~~~--~~----------~~~~~~~~~-~~i~l~ 71 (97)
T cd02981 16 KDDVVVVGFFKD--------EES---EEYKTFEKVAESLRDDYGFGHTSD--KE----------VAKKLKVKP-GSVVLF 71 (97)
T ss_pred cCCeEEEEEECC--------CCc---HHHHHHHHHHHhcccCCeEEEECh--HH----------HHHHcCCCC-CceEEe
Confidence 677888888887 887 456778888888876788866652 11 445576654 899999
Q ss_pred eCC-eEeEEecCcchhcHHHHHHhhhc
Q 032841 106 END-IVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~g-~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++. .....+.|. ...+.|.+||..
T Consensus 72 ~~~~~~~~~y~g~--~~~~~l~~fi~~ 96 (97)
T cd02981 72 KPFEEEPVEYDGE--FTEESLVEFIKD 96 (97)
T ss_pred CCcccCCccCCCC--CCHHHHHHHHHh
Confidence 864 222234443 336789899864
No 197
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.68 E-value=0.011 Score=43.48 Aligned_cols=97 Identities=15% Similarity=0.279 Sum_probs=65.9
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC---CcCccCCCCCccc-----------
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD---RPTWRNPQHPFRV----------- 90 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~----------- 90 (132)
..++|++|.|.+- .||+=+.-.+.++++.+++.+.+.|+.|-+.+ ...|.-+++.+.+
T Consensus 100 ~g~RPLVlnFGS~--------TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~ 171 (237)
T PF00837_consen 100 KGNRPLVLNFGSC--------TCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLR 171 (237)
T ss_pred cCCCCeEEEcccc--------cchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHH
Confidence 4789999999887 89999999999999999998666777777654 2245433331200
Q ss_pred -----------------------cccccccccce-EEEEeCCeEeEEe-cCcchhcHHHHHHhhhc
Q 032841 91 -----------------------NSRFKLTGVPT-LFRWENDIVSGRL-EDHEAHLEHKIKALLSA 131 (132)
Q Consensus 91 -----------------------~~~~~v~~vPt-~~~~~~g~~~~~~-~~~~~~~~~~l~~~l~~ 131 (132)
...|| .+|. ++++++|+.+..- .|......+++++||++
T Consensus 172 aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 172 AAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred HHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 11222 4674 5566788765332 23356778899999875
No 198
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.61 E-value=0.0065 Score=41.16 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=34.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhC--CCCcEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEAS--PDDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~--~~~~~~~~v~~~ 76 (132)
..+++++.|+. +-||+|+++.+.+.++.+++ ++++.++..++.
T Consensus 11 ~a~~~v~~f~d--------~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 11 DAPITVTEFFD--------FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTSEEEEEEE---------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeEEEEEEC--------CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 34566666666 49999999999999999887 678999999874
No 199
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.60 E-value=0.011 Score=45.69 Aligned_cols=90 Identities=6% Similarity=0.080 Sum_probs=55.3
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhh---HHHHHHHHh-CC-CCcEEEEEEeCCCc
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAE---PVIYKTLEA-SP-DDIALLQAYVGDRP 79 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~---p~~~~~~~~-~~-~~~~~~~v~~~~~~ 79 (132)
+++++..||.++++ +.+.++|+|+.+. +--..-++.. ..+-+++++ +. .++.|..||.....
T Consensus 36 Vi~LneKNfk~~lK-------kyd~l~l~yh~p~------~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~ 102 (383)
T PF01216_consen 36 VIDLNEKNFKRALK-------KYDVLVLYYHEPV------ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA 102 (383)
T ss_dssp CEEE-TTTHHHHHH-------H-SEEEEEEE--S------TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH
T ss_pred eEEcchhHHHHHHH-------hhcEEEEEEecCC------ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH
Confidence 56778889988765 4578888998861 1122222211 223334433 33 68999999987654
Q ss_pred CccCCCCCccccccccccccceEEEEeCCeEeEEecCc
Q 032841 80 TWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
. +++++|+...+++.+|.+|+.+. +.|.
T Consensus 103 ---k------lAKKLgv~E~~SiyVfkd~~~IE-ydG~ 130 (383)
T PF01216_consen 103 ---K------LAKKLGVEEEGSIYVFKDGEVIE-YDGE 130 (383)
T ss_dssp ---H------HHHHHT--STTEEEEEETTEEEE-E-S-
T ss_pred ---H------HHHhcCccccCcEEEEECCcEEE-ecCc
Confidence 2 88999999999999999998775 3354
No 200
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.50 E-value=0.0056 Score=42.17 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
.+++.++.|+.- .||+|+.+.+.+.++.+++++++.+..+.+
T Consensus 14 ~~~~~i~~f~D~--------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSY--------GCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECC--------CCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 456777777774 999999999999999988876776655543
No 201
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.42 E-value=0.029 Score=37.21 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=60.9
Q ss_pred ccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHH-Hh--CCCCcEEEEEEeCCCcCccCC
Q 032841 8 ATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTL-EA--SPDDIALLQAYVGDRPTWRNP 84 (132)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~ 84 (132)
+..-+|+.++. ..+.++|.|=.. -||=. -.-.+.+++ +. ..+++.+..|.+.+..+ .
T Consensus 9 LD~~tFdKvi~-------kf~~~LVKFD~a------yPyGe----Khd~F~~~A~e~~~~~~dLLvAeVGikDYGe---k 68 (126)
T PF07912_consen 9 LDELTFDKVIP-------KFKYVLVKFDVA------YPYGE----KHDAFKKLAKEASASSDDLLVAEVGIKDYGE---K 68 (126)
T ss_dssp ESTTHHHHHGG-------GSSEEEEEEEES------S--CH----HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS----
T ss_pred ccceehhheec-------cCceEEEEEecc------CCCcc----hHHHHHHHHHHHhcCCCceEEEEeCcccccc---h
Confidence 33445666543 668999999332 02322 234456666 32 23578899998877552 2
Q ss_pred CCCccccccccc--cccceEEEEeCC-eEeEEecCcchhcHHHHHHhhhcC
Q 032841 85 QHPFRVNSRFKL--TGVPTLFRWEND-IVSGRLEDHEAHLEHKIKALLSAD 132 (132)
Q Consensus 85 ~~~~~~~~~~~v--~~vPt~~~~~~g-~~~~~~~~~~~~~~~~l~~~l~~~ 132 (132)
.| -.++++|+| +.+|.+++|.+| +.--++........+.|++|+.++
T Consensus 69 ~N-~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 69 EN-MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CC-HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred hH-HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 22 337889999 679999999853 333455455567778999998753
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.21 E-value=0.033 Score=45.72 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
.+...++.|+.+ -|..|..+...++++++-. +++.+...|..+.. . ++++|++..+|++.++
T Consensus 365 ~~~v~l~~~~~~--------~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~---~------~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 365 ENPVTLLLFLDG--------SNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEP---E------SETLPKITKLPTVALL 426 (555)
T ss_pred CCCEEEEEEECC--------CchhhHHHHHHHHHHHhcC-CcEEEEEeccccch---h------hHhhcCCCcCCEEEEE
Confidence 334456666665 7999999999999998544 57777666654433 2 6678999999999999
Q ss_pred e-CCeEe-EEecCc
Q 032841 106 E-NDIVS-GRLEDH 117 (132)
Q Consensus 106 ~-~g~~~-~~~~~~ 117 (132)
+ +|+.. -|+.|.
T Consensus 427 ~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 427 DDDGNYTGLKFHGV 440 (555)
T ss_pred eCCCcccceEEEec
Confidence 6 44432 355554
No 203
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.11 E-value=0.01 Score=42.63 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHH---HHHHHhCCCCcEEEEEEe
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVI---YKTLEASPDDIALLQAYV 75 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~ 75 (132)
.+++.+|.|+.- -||+|+.+.|.+ ..+.+.+++++.++.+.+
T Consensus 36 ~~~~~VvEffdy--------~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSF--------YCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCC--------CCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 467778888886 899999999976 777888887777776665
No 204
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.98 E-value=0.0053 Score=42.05 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.4
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
+||+|++++.+|+.. ++.+-.+|++...
T Consensus 15 t~~~C~~ak~iL~~~------~V~~~e~DVs~~~ 42 (147)
T cd03031 15 TFEDCNNVRAILESF------RVKFDERDVSMDS 42 (147)
T ss_pred cChhHHHHHHHHHHC------CCcEEEEECCCCH
Confidence 899999999888774 4778888887543
No 205
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.058 Score=37.35 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=39.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDRP 79 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~ 79 (132)
.|++|+|+||=- .|+|-|....--|++...++. -++.++.|+.|...
T Consensus 29 ~Gk~VVLyFYPk-------~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~ 76 (157)
T COG1225 29 RGKPVVLYFYPK-------DFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPK 76 (157)
T ss_pred cCCcEEEEECCC-------CCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHH
Confidence 678999999876 499999999999999887775 47899999988643
No 206
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.041 Score=41.97 Aligned_cols=86 Identities=19% Similarity=0.311 Sum_probs=60.1
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC------C--CcEEEEEEeC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP------D--DIALLQAYVG 76 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~------~--~~~~~~v~~~ 76 (132)
++..+.++|..++. ....+-.++++|.|..-. .-|.-|+.+...++-+++... + ++-|..||.+
T Consensus 42 VI~~n~d~~~~~v~----~~prNys~IvmftA~~~~----~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~ 113 (331)
T KOG2603|consen 42 VIRMNDDKFSKFVR----PPPRNYSLIVMFTALQPH----SQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD 113 (331)
T ss_pred eEEecCcchhhhcc----CCCCCeEEEEEccccCCC----CcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc
Confidence 34445555555532 223456778899886322 379999999988888876531 2 4678889888
Q ss_pred CCcCccCCCCCccccccccccccceEEEEeC
Q 032841 77 DRPTWRNPQHPFRVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~ 107 (132)
+.+ + +-+.+++..+|+++++..
T Consensus 114 e~p---~------~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 114 ESP---Q------VFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred ccH---H------HHHHhcccCCCeEEEeCC
Confidence 865 2 556899999999999964
No 207
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.014 Score=48.70 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=48.7
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHH-HH--HHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccc-------
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPV-IY--KTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRF------- 94 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 94 (132)
..++||||....+ ||-.|+.|..- ++ ++++-.+.++.-|+||-++++ + ++..|
T Consensus 41 ~edkPIflSIGys--------~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERP---D------vD~~Ym~~~q~~ 103 (667)
T COG1331 41 EEDKPILLSIGYS--------TCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERP---D------VDSLYMNASQAI 103 (667)
T ss_pred HhCCCEEEEeccc--------cccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhcc---C------HHHHHHHHHHHh
Confidence 3899999999998 99999999752 21 244444556778888888877 3 33333
Q ss_pred -cccccceEEEEeC-CeE
Q 032841 95 -KLTGVPTLFRWEN-DIV 110 (132)
Q Consensus 95 -~v~~vPt~~~~~~-g~~ 110 (132)
|--|.|..+++-. |+.
T Consensus 104 tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred ccCCCCceeEEECCCCce
Confidence 3568998888764 554
No 208
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.52 E-value=0.012 Score=40.42 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=52.0
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhh-hHHHHHHHHhCC-CCc-EEEEEEeCCCc---CccCCCC---Ccc-------
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRA-EPVIYKTLEASP-DDI-ALLQAYVGDRP---TWRNPQH---PFR------- 89 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~-~p~~~~~~~~~~-~~~-~~~~v~~~~~~---~~~~~~~---~~~------- 89 (132)
.+++++|.||-. .|||.|... .+.+.+..+++. .++ .++.|..+... .|..... +|.
T Consensus 28 ~gk~vvl~fyP~-------~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~ 100 (155)
T cd03013 28 KGKKVVIFGVPG-------AFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNG 100 (155)
T ss_pred CCCcEEEEEeCC-------CCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCH
Confidence 355666666554 399999998 999999888764 456 58888876532 2332111 232
Q ss_pred -cccccccc------c-----cceEEEEeCCeEeEEecC
Q 032841 90 -VNSRFKLT------G-----VPTLFRWENDIVSGRLED 116 (132)
Q Consensus 90 -~~~~~~v~------~-----vPt~~~~~~g~~~~~~~~ 116 (132)
++..||+. + ..+.+++++|........
T Consensus 101 ~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~ 139 (155)
T cd03013 101 EFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVE 139 (155)
T ss_pred HHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEe
Confidence 34567662 1 355677777776554443
No 209
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.65 E-value=0.095 Score=34.41 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=27.1
Q ss_pred CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 28 KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 28 ~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
|.+++.| |+|-|+-|+.....+.++..+|. ++.||+
T Consensus 2 K~tLILf--------GKP~C~vCe~~s~~l~~ledeY~----ilrVNI 37 (123)
T PHA03075 2 KKTLILF--------GKPLCSVCESISEALKELEDEYD----ILRVNI 37 (123)
T ss_pred CceEEEe--------CCcccHHHHHHHHHHHHhhcccc----EEEEEe
Confidence 3567778 45799999999999977766654 666665
No 210
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.066 Score=32.51 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=39.9
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc-------CccCCCCCccccccccccccceEEE
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP-------TWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
+.|+|. -||+|..+...++++. +.+-.|++.... ..++....|.-.+..|--|||.+..
T Consensus 5 ~lfgsn--------~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 5 KLFGSN--------LCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred eeeccc--------cCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 578887 9999998888887763 344455554322 1223333344456778889999854
Q ss_pred EeCCeE
Q 032841 105 WENDIV 110 (132)
Q Consensus 105 ~~~g~~ 110 (132)
.+|+.
T Consensus 71 -~d~~v 75 (85)
T COG4545 71 -DDGKV 75 (85)
T ss_pred -CCCcE
Confidence 45543
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.49 E-value=0.091 Score=36.14 Aligned_cols=65 Identities=8% Similarity=0.143 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe-EeEEecCcchhcHHHHHHhhhc
Q 032841 53 AEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI-VSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 53 ~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~-~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
....+.++++.+.+.+.|+.+.-.+ +++.+++.. |++++++++. ....+.|. ..+.+.|.+||..
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~~------------~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-~~~~~~l~~fI~~ 73 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNEE------------LAKKYGIKE-PTIVVYKKFDEKPVVYDGD-KFTPEELKKFIKK 73 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-HH------------HHHHCTCSS-SEEEEEECTTTSEEEESSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHHH------------HHHHhCCCC-CcEEEeccCCCCceecccc-cCCHHHHHHHHHH
Confidence 3456778888887778988887322 667899999 9999999843 23345554 4578889999874
No 212
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.20 E-value=0.24 Score=36.84 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCc
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDI 68 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~ 68 (132)
..||+.+++..+. |||.|...+=.|..+..+++ ++
T Consensus 56 ~~Gk~~v~~igw~--------gCP~~A~~sW~L~~ALsrfG-n~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWE--------GCPYCAAESWALYIALSRFG-NF 90 (249)
T ss_pred CCCeeEEEEEecc--------cCccchhhHHHHHHHHHhcC-Ce
Confidence 3789999999998 99999999977888878886 44
No 213
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.15 E-value=0.08 Score=33.73 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=21.0
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDR 78 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~ 78 (132)
|+|+.|++....+++. ++.+-.+|+.+.
T Consensus 7 ~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 7 PNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred CCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 6999999998877773 456667777553
No 214
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.96 E-value=0.026 Score=36.61 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
|+|+.|++....|++- ++.|-.+|+...+
T Consensus 7 ~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 7 PKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred CCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 6999999999887763 5667777775533
No 215
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=93.04 E-value=0.71 Score=29.77 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=53.4
Q ss_pred cccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 9 TVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
++.+..++ .+++. ...-|+|.|..+ -..-......+.++++...+.-.++.||+++.+ -+.
T Consensus 5 ~i~d~Kdf-KKLLR---Tr~NVLvLy~ks---------~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kK----- 65 (112)
T cd03067 5 DISDHKDF-KKLLR---TRNNVLVLYSKS---------AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRK----- 65 (112)
T ss_pred cccchHHH-HHHHh---hcCcEEEEEecc---------hhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHH-----
Confidence 44555565 55554 566677777775 445555667788888887777788888887632 112
Q ss_pred ccccccccc----ccce-EEEEeCCe
Q 032841 89 RVNSRFKLT----GVPT-LFRWENDI 109 (132)
Q Consensus 89 ~~~~~~~v~----~vPt-~~~~~~g~ 109 (132)
+|+++.|. .-|. +..|++|.
T Consensus 66 -LCKKlKv~~~~kp~~~~LkHYKdG~ 90 (112)
T cd03067 66 -LCKKLKVDPSSKPKPVELKHYKDGD 90 (112)
T ss_pred -HHHHHccCCCCCCCcchhhcccCCC
Confidence 88888888 5564 45567773
No 216
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.37 Score=30.90 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceE-EE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTL-FR 104 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~-~~ 104 (132)
+..+|+++.-++. ..|-|+...+...++... + -+.|..+|+=..++.+. -.++| ...||+ -+
T Consensus 13 ~~n~VvLFMKGtp----~~P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~------~lk~~--s~WPT~PQL 75 (105)
T COG0278 13 KENPVVLFMKGTP----EFPQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQ------GLKEY--SNWPTFPQL 75 (105)
T ss_pred hcCceEEEecCCC----CCCCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHh------ccHhh--cCCCCCcee
Confidence 3456777776652 346788777766666554 2 27788899866553222 11222 356666 44
Q ss_pred EeCCeEeEEecCc-chhcHHHHHHhhhc
Q 032841 105 WENDIVSGRLEDH-EAHLEHKIKALLSA 131 (132)
Q Consensus 105 ~~~g~~~~~~~~~-~~~~~~~l~~~l~~ 131 (132)
|-+|+.++-..-. +.....+|+.+|++
T Consensus 76 yi~GEfvGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 76 YVNGEFVGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred eECCEEeccHHHHHHHHHcchHHHHHHh
Confidence 5577544321111 33444456666653
No 217
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.12 E-value=0.28 Score=32.80 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|||+.|++....|++- ++.+-.+|+..
T Consensus 8 ~~C~~C~ka~~~L~~~------gi~~~~idi~~ 34 (131)
T PRK01655 8 PSCTSCRKAKAWLEEH------DIPFTERNIFS 34 (131)
T ss_pred CCChHHHHHHHHHHHc------CCCcEEeeccC
Confidence 6999999988777663 45555666544
No 218
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.68 E-value=0.32 Score=31.25 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=20.7
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDR 78 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~ 78 (132)
|||+.|++....|++- ++.+-.+|+.+.
T Consensus 7 ~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 7 KNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred CCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 6999999998887764 455666776543
No 219
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.96 E-value=1.9 Score=27.27 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcc
Q 032841 10 VSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFR 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 89 (132)
+.+.+++ ++++. ..+.++|-|+.+. =. .....+.++++.+.+...|....-..
T Consensus 5 i~s~~~l-~~f~~---~~~~~Vvg~f~~~--------~~---~~~~~F~~vA~~~R~d~~F~~~~~~~------------ 57 (104)
T cd03069 5 LRTEAEF-EKFLS---DDDASVVGFFEDE--------DS---KLLSEFLKAADTLRESFRFAHTSDKQ------------ 57 (104)
T ss_pred cCCHHHH-HHHhc---cCCcEEEEEEcCC--------Cc---hHHHHHHHHHHhhhhcCEEEEEChHH------------
Confidence 3344444 33443 5666677666641 11 34567778888886677775543321
Q ss_pred ccccccccccceEEEEeCC-------eEeEEecCcchhcHHHHHHhhhc
Q 032841 90 VNSRFKLTGVPTLFRWEND-------IVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g-------~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
+++.+++ .|++++|+.. .....+.|. ...+.|.+||..
T Consensus 58 ~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~--~~~~~l~~fi~~ 102 (104)
T cd03069 58 LLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGD--LDSSKIKKFIRE 102 (104)
T ss_pred HHHhcCC--CCceEEEechhhhcccCcccccccCc--CCHHHHHHHHHh
Confidence 4557887 6888888431 111123332 346789999864
No 220
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=90.80 E-value=1.4 Score=26.49 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=46.7
Q ss_pred EEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhC-CCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeC
Q 032841 30 NFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEAS-PDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 30 v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~ 107 (132)
.+..|-++ -.+-.++....+.++.+++ ++...+=.||+.+.+ . +++.++|-.+||++....
T Consensus 3 ~L~Lyv~g--------~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-----~----lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 3 VLRLYVAG--------RTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-----Q----LAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEEECC--------CCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-----h----HHhhCCEEEechhhhcCC
Confidence 34556665 5678888888888888775 467788888887766 2 788999999999987654
No 221
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.73 E-value=0.43 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDR 78 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~ 78 (132)
|+|+.|++....+++- ++.+..+|+.+.
T Consensus 7 ~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (117)
T TIGR01617 7 PNCTTCKKARRWLEAN------GIEYQFIDIGED 34 (117)
T ss_pred CCCHHHHHHHHHHHHc------CCceEEEecCCC
Confidence 5999999999888772 456677776543
No 222
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.41 E-value=0.64 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=20.1
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|+|+.|++....|++. ++.+-.+|+.+
T Consensus 8 ~~C~~c~ka~~~L~~~------gi~~~~idi~~ 34 (115)
T cd03032 8 PSCSSCRKAKQWLEEH------QIPFEERNLFK 34 (115)
T ss_pred CCCHHHHHHHHHHHHC------CCceEEEecCC
Confidence 6999999998888773 45566667644
No 223
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=89.74 E-value=0.82 Score=32.95 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCCh-hHHhhhHHHHHHHHhCC----CCcEEEEEEeCCC
Q 032841 26 KNKANFILFLADKDPSTSLSWCP-DCVRAEPVIYKTLEASP----DDIALLQAYVGDR 78 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~-~C~~~~p~~~~~~~~~~----~~~~~~~v~~~~~ 78 (132)
.|++.+|+|.=+ .|| -|-.+...+..+.++.. .++.++.|.+|..
T Consensus 66 ~Gk~~lv~FgyT--------~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 66 KGKPSLVFFGYT--------HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred CCCEEEEEeecC--------CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 789999999765 786 48888888888777654 4567777777653
No 224
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.65 E-value=0.79 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=19.1
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|+|+.|++....|++- ++.+-.+|+..
T Consensus 8 ~~C~~crkA~~~L~~~------gi~~~~~di~~ 34 (131)
T PRK12559 8 ASCASCRKAKAWLEEN------QIDYTEKNIVS 34 (131)
T ss_pred CCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence 6999999988777663 35555566543
No 225
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.63 E-value=1.9 Score=27.74 Aligned_cols=73 Identities=23% Similarity=0.192 Sum_probs=53.1
Q ss_pred CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhC-CCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEe
Q 032841 28 KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEAS-PDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 28 ~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~ 106 (132)
..++=.|.|+ --|-.++....+.++.+.+ ++...+=-||+.+.+ . +++.++|-.+||++...
T Consensus 6 ~~~LrLyVag--------~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP-----e----lAE~~~IvATPTLIK~~ 68 (103)
T PRK09301 6 TYILKLYVAG--------NTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP-----Q----LAEEDKILATPTLAKIL 68 (103)
T ss_pred eEEEEEEEeC--------CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-----h----HHhHCCeEEecHHhhcC
Confidence 4455566666 6888888888888887764 455666677777655 2 88899999999988776
Q ss_pred CCeEeEEecCcc
Q 032841 107 NDIVSGRLEDHE 118 (132)
Q Consensus 107 ~g~~~~~~~~~~ 118 (132)
. ....|+.|.-
T Consensus 69 P-~P~rriiGDl 79 (103)
T PRK09301 69 P-PPVRKIIGDL 79 (103)
T ss_pred C-CCcceeeccc
Confidence 4 3456777763
No 226
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=89.12 E-value=0.91 Score=31.76 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=23.8
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
|+|+.|=..+|.+.++..+++..+.+-.|-.
T Consensus 6 Plc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 6 PLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred CCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 7999999999999999999987665555543
No 227
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.54 E-value=0.81 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.1
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
++||.|++.+-.+.+.
T Consensus 8 ~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 8 EGSPFCRLVREVLTEL 23 (77)
T ss_pred CCCchHHHHHHHHHHc
Confidence 5999999888777664
No 228
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=88.26 E-value=0.94 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.6
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCc
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDI 68 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~ 68 (132)
|.||.+ |.||.|-...+.+.++.++++.++
T Consensus 3 i~~~~D-------~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFID-------PLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEEC-------CCCchhhCchHHHHHHHHHhCCCc
Confidence 567776 799999999999999999884333
No 229
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=87.76 E-value=1.1 Score=31.33 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCCeEEEEEEeeCCCCCCCCCC-hhHHhhhHHHHHHHHhCC---CCcEEEEEEeCCC
Q 032841 26 KNKANFILFLADKDPSTSLSWC-PDCVRAEPVIYKTLEASP---DDIALLQAYVGDR 78 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC-~~C~~~~p~~~~~~~~~~---~~~~~~~v~~~~~ 78 (132)
.|++++|.|.-+ -| ..|-.+...+.++.++++ .++.++.|.+|-.
T Consensus 51 ~Gk~~lv~F~yT--------~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYT--------RCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-T--------TSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEc--------CCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 689999999776 78 568888777777766543 4788999998753
No 230
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=87.59 E-value=1.5 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=19.4
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|+|+.|++....|++- ++.+-.+|+..
T Consensus 8 ~~C~~crkA~~~L~~~------~i~~~~~d~~~ 34 (132)
T PRK13344 8 SSCTSCKKAKTWLNAH------QLSYKEQNLGK 34 (132)
T ss_pred CCCHHHHHHHHHHHHc------CCCeEEEECCC
Confidence 6999999988777652 45566666654
No 231
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=87.21 E-value=3.5 Score=25.73 Aligned_cols=63 Identities=24% Similarity=0.188 Sum_probs=47.4
Q ss_pred CChhHHhhhHHHHHHHHhC-CCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcc
Q 032841 46 WCPDCVRAEPVIYKTLEAS-PDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHE 118 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~ 118 (132)
--|-.+.....+.++.+++ ++...+=-||+.+.+ . +++.++|-.+||++....+ ...|+.|.-
T Consensus 13 ~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP-----~----lAE~~~IvATPtLIK~~P~-P~rriiGdl 76 (87)
T TIGR02654 13 NTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP-----Q----LAEEDKILATPTLSKILPP-PVRKIIGDL 76 (87)
T ss_pred CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH-----h----HHhHCCEEEecHHhhcCCC-Ccceeeccc
Confidence 6788888888888887764 455666677777755 2 8889999999999887643 456777763
No 232
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.04 E-value=0.41 Score=32.17 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=23.0
Q ss_pred ccccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhhh
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALLS 130 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 130 (132)
.+.+++|.++||+++ +|+. +.+ ....+.+.++|+
T Consensus 128 ~~~~~~i~~tPt~~i--nG~~---~~~--~~~~~~l~~~Id 161 (162)
T PF13462_consen 128 LARQLGITGTPTFFI--NGKY---VVG--PYTIEELKELID 161 (162)
T ss_dssp HHHHHT-SSSSEEEE--TTCE---EET--TTSHHHHHHHHH
T ss_pred HHHHcCCccccEEEE--CCEE---eCC--CCCHHHHHHHHc
Confidence 356789999999988 7754 333 345667777775
No 233
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.77 E-value=1.1 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
|+|+.|++.+-.+.... . ....+.++...... + ...| .+......+|++..
T Consensus 7 ~~s~~~~~~~~~L~~~~--l--~~~~~~v~~~~~~~-~--~~~~--~~~~p~~~vP~l~~ 57 (74)
T cd03051 7 PTAPNPRRVRIFLAEKG--I--DVPLVTVDLAAGEQ-R--SPEF--LAKNPAGTVPVLEL 57 (74)
T ss_pred CCCcchHHHHHHHHHcC--C--CceEEEeecccCcc-C--CHHH--HhhCCCCCCCEEEe
Confidence 59999999998877652 1 24455555432110 0 0111 12334568999964
No 234
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.71 E-value=0.54 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQ 72 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~ 72 (132)
+-||.|-...+.+.++.+.++ ++.+..
T Consensus 8 ~~Cp~cy~~~~~l~~l~~~~~-~~~i~~ 34 (193)
T PF01323_consen 8 FICPWCYLASPRLRKLRAEYP-DVEIEW 34 (193)
T ss_dssp TTBHHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 589999999999999988883 244433
No 235
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.12 E-value=0.74 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC
Q 032841 27 NKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD 66 (132)
Q Consensus 27 ~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~ 66 (132)
..++-|++|++ +=||.|-..++.|+++...++.
T Consensus 3 ~~~i~I~v~sD-------~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 3 PMKIEIDVFSD-------VVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred CceEEEEEEeC-------CcCchhhcCHHHHHHHHHhcCc
Confidence 45667788887 6888888888888888777763
No 236
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.08 E-value=1.8 Score=25.08 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
+|||.|++.+-.+.... -.+.++.++..... .. ..+......+|++.. ++|.
T Consensus 7 ~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~------~~--~~~~np~~~vP~L~~-~~g~ 58 (71)
T cd03060 7 RRCPYAMRARMALLLAG----ITVELREVELKNKP------AE--MLAASPKGTVPVLVL-GNGT 58 (71)
T ss_pred CCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCC------HH--HHHHCCCCCCCEEEE-CCCc
Confidence 49999999887776642 13455556553221 11 112334568999853 3353
No 237
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=84.89 E-value=2.6 Score=23.27 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=27.7
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
++||.|++.+-.+.... -.+....++......+ ...+...-..+|++..
T Consensus 7 ~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~-------~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 7 PGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQE-------EFLALNPLGKVPVLED 55 (71)
T ss_pred CCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCH-------HHHhcCCCCCCCEEEE
Confidence 49999998888777652 1234444443222110 0123456668998754
No 238
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=80.03 E-value=12 Score=23.38 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
++..++|-|+.+. =. .....+.+++..+.....|....-.. +++.+++. .|+++++
T Consensus 18 ~~~~~Vvg~f~~~--------~~---~~~~~F~~vA~~~R~d~~F~~~~~~~------------~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 18 EDDIKLIGYFKSE--------DS---EHYKAFEEAAEEFHPYIKFFATFDSK------------VAKKLGLK-MNEVDFY 73 (102)
T ss_pred cCCeEEEEEECCC--------CC---HHHHHHHHHHHhhhcCCEEEEECcHH------------HHHHcCCC-CCcEEEe
Confidence 3556666666541 11 34566778888776567774433211 44456665 6889888
Q ss_pred eC-CeEeEEecCcchhcHHHHHHhhhc
Q 032841 106 EN-DIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 106 ~~-g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
++ ++....+.+. ....+.|.+||..
T Consensus 74 ~~~~e~~~~y~~g-~~~~~~l~~fi~~ 99 (102)
T cd03066 74 EPFMEEPVTIPDK-PYSEEELVDFVEE 99 (102)
T ss_pred CCCCCCCcccCCC-CCCHHHHHHHHHH
Confidence 75 3222223122 3466789999874
No 239
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=1.3 Score=31.93 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ccccccccccccceEEEEeCCeE
Q 032841 88 FRVNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 88 ~~~~~~~~v~~vPt~~~~~~g~~ 110 (132)
+++..++++.|+||+++-++|+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~ 186 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM 186 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce
Confidence 56678999999999999999874
No 240
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=79.76 E-value=2 Score=29.30 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=15.1
Q ss_pred ccccccccccceEEEEeCCeE
Q 032841 90 VNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~ 110 (132)
.+.++||.++||+++ +|+.
T Consensus 135 ~~~~~gi~gTPt~iI--nG~~ 153 (178)
T cd03019 135 LAKKYKITGVPAFVV--NGKY 153 (178)
T ss_pred HHHHcCCCCCCeEEE--CCEE
Confidence 356899999999988 6653
No 241
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=78.42 E-value=13 Score=23.16 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 44 LSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 44 ~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
..+||.|++.+-.+... +-...++.+|....+
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p 50 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKP 50 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCC
Confidence 67999999988877664 113455666665544
No 242
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=77.90 E-value=2.2 Score=30.45 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=15.4
Q ss_pred ccccccccccceEEEEeCCeE
Q 032841 90 VNSRFKLTGVPTLFRWENDIV 110 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~ 110 (132)
.+.++||+|+||+++ +|+.
T Consensus 159 ~a~~~gI~gtPtfiI--nGky 177 (207)
T PRK10954 159 AAADLQLRGVPAMFV--NGKY 177 (207)
T ss_pred HHHHcCCCCCCEEEE--CCEE
Confidence 357899999999988 6654
No 243
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=76.58 E-value=4.1 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC----CCcEEEEEEe
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP----DDIALLQAYV 75 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~----~~~~~~~v~~ 75 (132)
..|+.++|-+.-. +|..|..-...|+.+..++. .+|.|+.|+-
T Consensus 24 ~~G~VtvVALL~a--------sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 24 SLGHVTVVALLQA--------SCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred cCCcEEeeeehhh--------hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 3678888988887 99999999999988875542 4789999984
No 244
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=76.08 E-value=6.9 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=15.5
Q ss_pred ccccccccccceEEEEeC
Q 032841 90 VNSRFKLTGVPTLFRWEN 107 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~ 107 (132)
+-++|+|+.+||+++.++
T Consensus 63 ~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 63 LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHhhCCceEcCEEEEEcC
Confidence 345899999999999887
No 245
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.74 E-value=2.5 Score=29.24 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred ccccccccccceEEEEeCCe
Q 032841 90 VNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~ 109 (132)
.+.++||.|+||+++.+++.
T Consensus 161 ~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 161 LARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHcCCCccCEEEEEeCCe
Confidence 35678999999999998775
No 246
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=75.72 E-value=1.2 Score=34.06 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=44.5
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 105 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~ 105 (132)
+...+-+.||++ |||.-+..+|.+.-...-++ .+.... +++.. ..|. +..+|++.+.|+.++.
T Consensus 75 ~~~~vs~~fy~s--------~C~fsr~~~~~fd~~~sl~~-~i~h~~--vee~~--~lps----v~s~~~~~~~ps~~~~ 137 (319)
T KOG2640|consen 75 KNDYVSLLFYAS--------WCPFSRAVRPEFDVRSSLFS-SIQHFA--VEESQ--ALPS----VFSSYGIHSEPSNLML 137 (319)
T ss_pred cCCcccccchhc--------ccCcccccCcccchhhhhcc-cccccc--HHHHh--hccc----chhccccccCCcceee
Confidence 356788899998 99999999998877665554 222222 22221 1122 6678999999999887
Q ss_pred eC
Q 032841 106 EN 107 (132)
Q Consensus 106 ~~ 107 (132)
..
T Consensus 138 n~ 139 (319)
T KOG2640|consen 138 NQ 139 (319)
T ss_pred cc
Confidence 64
No 247
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=75.57 E-value=1.8 Score=26.63 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=46.4
Q ss_pred CChhHHhhhHHHHHHHHh-CCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCc
Q 032841 46 WCPDCVRAEPVIYKTLEA-SPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
--+..+++...+..+.+. .+.++.+=-||+.+.+ . ++..++|-.+||++....+ ...++.|.
T Consensus 7 ~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P---~------lAe~~~ivAtPtLik~~P~-P~rrliGd 69 (82)
T PF07689_consen 7 RTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQP---E------LAEEDRIVATPTLIKESPE-PRRRLIGD 69 (82)
T ss_dssp BHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH---S------HHTTTEEECHHHHHTTSSH-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH---h------HHhHCCeeecceEeeccCC-CceEEecc
Confidence 567788888899998876 4577888889998866 2 8889999999999876542 23344443
No 248
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.65 E-value=2.7 Score=29.05 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=17.5
Q ss_pred cccccccccceEEEEeCCeEeEEecCcch
Q 032841 91 NSRFKLTGVPTLFRWENDIVSGRLEDHEA 119 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~~g~~~~~~~~~~~ 119 (132)
+.++||.|+||+++ +|+ .+.|.+.
T Consensus 160 a~~~gi~gvPtfvv--~g~---~~~G~~~ 183 (192)
T cd03022 160 AIARGVFGVPTFVV--DGE---MFWGQDR 183 (192)
T ss_pred HHHcCCCcCCeEEE--CCe---eeccccc
Confidence 56789999999988 563 4456543
No 249
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.53 E-value=7.8 Score=28.04 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=25.0
Q ss_pred CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEE
Q 032841 28 KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAY 74 (132)
Q Consensus 28 ~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~ 74 (132)
+..++.|.- .-||+|+...|.+.+.+...+ +++++..+
T Consensus 85 ~v~v~~f~d--------~~Cp~C~~~~~~l~~~~i~~~-~~~~~~~~ 122 (244)
T COG1651 85 PVTVVEFFD--------YTCPYCKEAFPELKKKYIDDG-KVRLVLRE 122 (244)
T ss_pred CceEEEEec--------CcCccHHHHHHHHHHHhhhcC-CCceEEEE
Confidence 445555554 489999999999988665554 34444444
No 250
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=74.48 E-value=4.3 Score=26.36 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=18.2
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
|.|+.|++....|++- ++.+-.+|+-
T Consensus 8 p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 8 PGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred CCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 6999999998777763 3445555543
No 251
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=74.10 E-value=8.1 Score=22.03 Aligned_cols=16 Identities=13% Similarity=-0.134 Sum_probs=12.8
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
++||.|++..-.+...
T Consensus 7 ~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 7 PDDVYSHRVRIVLAEK 22 (73)
T ss_pred CCChhHHHHHHHHHHc
Confidence 4899999998877654
No 252
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=73.76 E-value=0.93 Score=31.71 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=14.3
Q ss_pred cccccccccccceEEEEe
Q 032841 89 RVNSRFKLTGVPTLFRWE 106 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~ 106 (132)
+++.+++|++.||+++++
T Consensus 138 ~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 138 QLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHTT-SSSSEEEEE-
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 367889999999999998
No 253
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=73.44 E-value=5.9 Score=22.78 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=27.4
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLF 103 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~ 103 (132)
|+|+.|++.+-.+.... -.+..+.++......+ ...| .+......+|++.
T Consensus 7 ~~~~~~~~v~~~l~~~g----i~~e~~~i~~~~~~~~---~~~~--~~~~p~~~vP~l~ 56 (74)
T cd03045 7 PGSPPCRAVLLTAKALG----LELNLKEVNLMKGEHL---KPEF--LKLNPQHTVPTLV 56 (74)
T ss_pred CCCCcHHHHHHHHHHcC----CCCEEEEecCccCCcC---CHHH--HhhCcCCCCCEEE
Confidence 59999998877776642 2345555554332210 0111 1233345799995
No 254
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=72.42 E-value=22 Score=22.60 Aligned_cols=95 Identities=12% Similarity=0.217 Sum_probs=50.9
Q ss_pred ccchHHHHHHHhhhCCCC-CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCc
Q 032841 10 VSSFDNVFDKFKSEAPKN-KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPF 88 (132)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 88 (132)
+.+.+++ +.++. .. +.++|-|+.+. =+ .....+.++++.+.+...|....-..
T Consensus 5 i~s~~el-e~f~~---~~~~~~VVG~F~~~--------~~---~~~~~F~~vA~~~Rdd~~F~~t~~~~----------- 58 (107)
T cd03068 5 LQTLKQV-QEFLR---DGDDVIIIGVFSGE--------ED---PAYQLYQDAANSLREDYKFHHTFDSE----------- 58 (107)
T ss_pred cCCHHHH-HHHHh---cCCCEEEEEEECCC--------CC---HHHHHHHHHHHhcccCCEEEEEChHH-----------
Confidence 3444554 33333 33 56666665541 11 34566778888886677775443221
Q ss_pred cccccccccccceEEEEeCCeE-------eEEecCcchhcHHHHHHhhhcC
Q 032841 89 RVNSRFKLTGVPTLFRWENDIV-------SGRLEDHEAHLEHKIKALLSAD 132 (132)
Q Consensus 89 ~~~~~~~v~~vPt~~~~~~g~~-------~~~~~~~~~~~~~~l~~~l~~~ 132 (132)
+...+++. -|++++|+.... ...+.|.+...++.|++||.++
T Consensus 59 -~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 59 -IFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred -HHHhcCCC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 44566665 577777754221 1123333223345599998753
No 255
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.87 E-value=41 Score=27.45 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=32.8
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe-EEecCc
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS-GRLEDH 117 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~-~~~~~~ 117 (132)
-|+.|..+...++++++-.+ ++.+.. .. .. ...|++.+.++|+.. -|+.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~s~-~i~~~~---~~------------~~-----~~~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 29 DSEKSAELKELLEEIASLSD-KITVEE---DS------------LD-----VRKPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CCchHHHHHHHHHHHHHhCC-ceEEEE---cc------------CC-----CCCCEEEEEcCCccceEEEEec
Confidence 59999999999999987654 555422 11 10 236888888766443 255544
No 256
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=70.10 E-value=3.2 Score=29.55 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=22.2
Q ss_pred cccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 91 NSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+.+.||.|+||+++=++++....+-|.+... .++++|
T Consensus 172 A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~--~~~~~l 208 (209)
T cd03021 172 ALKYGAFGLPWIVVTNDKGKTEMFFGSDRFE--QVADFL 208 (209)
T ss_pred HHHcCCCCCCEEEEEcCCCCccceecCCcHH--HHHHHh
Confidence 4567999999998854322223566665433 444444
No 257
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=69.85 E-value=35 Score=27.83 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=32.8
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe-EEecCc
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS-GRLEDH 117 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~-~~~~~~ 117 (132)
-|+.|..+...++++++-.+ ++.+..-+.+ ....|++.+..+|+.. -|+.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~-------------------~~~~p~~~~~~~~~~~~i~f~g~ 81 (515)
T TIGR03140 29 SHEKSKELLELLDEIASLSD-KISLTQNTAD-------------------TLRKPSFTILRDGADTGIRFAGI 81 (515)
T ss_pred CCchhHHHHHHHHHHHHhCC-CeEEEEecCC-------------------cCCCCeEEEecCCcccceEEEec
Confidence 48999999999999977554 6655332211 1134888887766532 255554
No 258
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=68.73 E-value=8.2 Score=28.67 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=48.1
Q ss_pred eEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEE--EEEEeCCCcCccCCCC-------Ccccccccccccc
Q 032841 29 ANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIAL--LQAYVGDRPTWRNPQH-------PFRVNSRFKLTGV 99 (132)
Q Consensus 29 ~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~-------~~~~~~~~~v~~v 99 (132)
+.+|..|+| --|..|-.....+.++.++- ++.- +.||.-+..-|+|+-. ++..+..|+-+++
T Consensus 42 ~~VVELfTS-------QGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~v 112 (261)
T COG5429 42 LGVVELFTS-------QGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGV 112 (261)
T ss_pred ceEEEEeec-------CCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCC
Confidence 455655555 28999988888888887653 3332 4555566777887321 1123467999999
Q ss_pred ceEEEEeCCeE
Q 032841 100 PTLFRWENDIV 110 (132)
Q Consensus 100 Pt~~~~~~g~~ 110 (132)
+|=-.+-+|..
T Consensus 113 yTPQavvnGr~ 123 (261)
T COG5429 113 YTPQAVVNGRV 123 (261)
T ss_pred CCchheeechh
Confidence 99877777753
No 259
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=67.71 E-value=24 Score=25.43 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=33.9
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC--CcCccCCCCC--c-----cccccccccc--cceEEEEeCCeE
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGD--RPTWRNPQHP--F-----RVNSRFKLTG--VPTLFRWENDIV 110 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~--~-----~~~~~~~v~~--vPt~~~~~~g~~ 110 (132)
-|..|-.....|.++..+ + ++..+...+|. ..-|+|+-.. | ..+..++..+ +|.+++ +|..
T Consensus 9 GCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG~~ 80 (202)
T PF06764_consen 9 GCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NGRE 80 (202)
T ss_dssp T-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TTTE
T ss_pred CCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CCee
Confidence 899999999999999888 3 67666666664 4458885321 1 1134455555 455544 6653
No 260
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.22 E-value=17 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=22.8
Q ss_pred cccccccccceEEEEeCCeEeEEecCcchhcHHHHHHhh
Q 032841 91 NSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIKALL 129 (132)
Q Consensus 91 ~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~~~l 129 (132)
+.++||.|+||+++ +|+ ..+.|.+.. +.|++.|
T Consensus 160 a~~~gv~GvP~~vv--~g~--~~~~G~~~~--~~l~~~l 192 (193)
T PF01323_consen 160 ARQLGVFGVPTFVV--NGK--YRFFGADRL--DELEDAL 192 (193)
T ss_dssp HHHTTCSSSSEEEE--TTT--EEEESCSSH--HHHHHHH
T ss_pred HHHcCCcccCEEEE--CCE--EEEECCCCH--HHHHHHh
Confidence 56799999999999 665 467776542 3455544
No 261
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.31 E-value=15 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=24.5
Q ss_pred ccccccccccceEEEEeCCeEeEEecCc--chhcHHHHHHhhh
Q 032841 90 VNSRFKLTGVPTLFRWENDIVSGRLEDH--EAHLEHKIKALLS 130 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~~~~~~~~~--~~~~~~~l~~~l~ 130 (132)
.+.+.||+++|||++ ++| ..+.|. ....+..|++.+.
T Consensus 176 ~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 176 AAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHh
Confidence 367899999999988 333 345565 3345566666654
No 262
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=65.60 E-value=17 Score=28.46 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=39.4
Q ss_pred ChhHHhhhHHHHHHHHh----CC---C--CcEEEEEEeCCCcCccCCCCCccccccccccc--cceEEEEeCCeEeEEec
Q 032841 47 CPDCVRAEPVIYKTLEA----SP---D--DIALLQAYVGDRPTWRNPQHPFRVNSRFKLTG--VPTLFRWENDIVSGRLE 115 (132)
Q Consensus 47 C~~C~~~~p~~~~~~~~----~~---~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--vPt~~~~~~g~~~~~~~ 115 (132)
||.|-+..-.+.+..++ +. . ++.+..|=++...+- ....+|+.+ -|...+|.+|+.+.++.
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEa--------k~AdiGia~~~~~~~~~f~~g~~~~~~~ 335 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEA--------KHADIGIAGGGKGSGPVFVKGEIIKKLP 335 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcch--------hccceeeecCCCCeeEEEECCeEEEecC
Confidence 99998877555554332 21 1 234444444443321 224677764 68999999999998887
Q ss_pred Ccc
Q 032841 116 DHE 118 (132)
Q Consensus 116 ~~~ 118 (132)
+..
T Consensus 336 ~~~ 338 (361)
T COG0821 336 EED 338 (361)
T ss_pred hhh
Confidence 764
No 263
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=65.34 E-value=9.3 Score=22.21 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
+.||.|++.+-.+...
T Consensus 8 ~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 8 KTCPFCCKVRAFLDYH 23 (77)
T ss_pred CCCHHHHHHHHHHHHC
Confidence 3899999998766664
No 264
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=65.16 E-value=31 Score=21.56 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=31.2
Q ss_pred hhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEe-EEecCc
Q 032841 48 PDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVS-GRLEDH 117 (132)
Q Consensus 48 ~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~-~~~~~~ 117 (132)
+.|..+...++++++-.+ ++.+.. .... . ..|++.+.++|+.. -|+.|.
T Consensus 31 ~~~~e~~~ll~e~a~lSd-kI~~~~---~~~~-------------~----~~P~~~i~~~~~~~gIrF~Gi 80 (94)
T cd02974 31 EKSAELLELLEEIASLSD-KITLEE---DNDD-------------E----RKPSFSINRPGEDTGIRFAGI 80 (94)
T ss_pred cchHHHHHHHHHHHHhCC-ceEEEE---ecCC-------------C----CCCEEEEecCCCcccEEEEec
Confidence 889999999999877554 555422 1111 1 36999988776432 356664
No 265
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=65.02 E-value=6.8 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=18.4
Q ss_pred ccceEEEEe-CCeEeEEecCcchhcHHHHHHhhhc
Q 032841 98 GVPTLFRWE-NDIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 98 ~vPt~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
.-|++++++ +|+++.++.-.. .+.+.|.+||++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~-w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEK-WKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SS-SSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEccc-CCHHHHHHHHHH
Confidence 458999998 577777765433 466778888864
No 266
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=63.46 E-value=13 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=19.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|-|..|+++...+++- ++.+..+|+-+
T Consensus 7 ~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 7 PRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred CCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 5899999998777663 45566667644
No 267
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=63.39 E-value=4.4 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.9
Q ss_pred ccccccccccceEEEEeCCe
Q 032841 90 VNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 90 ~~~~~~v~~vPt~~~~~~g~ 109 (132)
+-++|+|+.+|++++.+++.
T Consensus 63 lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 63 WFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHhhcCceEcCEEEEECCCC
Confidence 44589999999999998763
No 268
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=63.39 E-value=13 Score=23.91 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=19.8
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
|-|..|++....+++. ++.+..+|+-+
T Consensus 7 ~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 7 PRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred CCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 6999999999888773 45555666544
No 269
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=62.93 E-value=67 Score=26.13 Aligned_cols=77 Identities=10% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhH-HHH-HH-HHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEP-VIY-KT-LEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTL 102 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p-~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~ 102 (132)
..+.+||.|.+.+|+ ....+.- .+. .. ...+...+..++|+.+... ... .+.-|.+-.+|++
T Consensus 17 ~kkalfVVyI~gddE--------~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-----a~q--Fs~IYp~v~vPs~ 81 (506)
T KOG2507|consen 17 GKKALFVVYISGDDE--------ESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-----ATQ--FSAIYPYVSVPSI 81 (506)
T ss_pred cCCeEEEEEEecCch--------HhhHHhhccchhhhhhhhhhcceEEEEeccCchh-----hhh--hhhhcccccccce
Confidence 556778878776333 3333331 111 11 1122234555666654432 112 2356889999999
Q ss_pred EEEe-CCeEeEEecCc
Q 032841 103 FRWE-NDIVSGRLEDH 117 (132)
Q Consensus 103 ~~~~-~g~~~~~~~~~ 117 (132)
++|. .|..+.+..|.
T Consensus 82 ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 82 FFIGFSGTPLEVITGF 97 (506)
T ss_pred eeecCCCceeEEeecc
Confidence 9997 48888877775
No 270
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=62.33 E-value=28 Score=20.12 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=28.9
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
++||.|++.+-.++.. ++.+-.++++... . ... ......-..+|++. .+|.
T Consensus 5 ~~Sp~~~kv~~~l~~~------~i~~~~~~v~~~~---~-~~~--~~~~~p~~~vPvL~--~~g~ 55 (75)
T PF13417_consen 5 PGSPYSQKVRLALEEK------GIPYELVPVDPEE---K-RPE--FLKLNPKGKVPVLV--DDGE 55 (75)
T ss_dssp TTSHHHHHHHHHHHHH------TEEEEEEEEBTTS---T-SHH--HHHHSTTSBSSEEE--ETTE
T ss_pred CCChHHHHHHHHHHHc------CCeEEEeccCccc---c-hhH--HHhhcccccceEEE--ECCE
Confidence 5999999998877765 2333334443221 1 011 11233556899997 4464
No 271
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=17 Score=28.39 Aligned_cols=59 Identities=8% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeC--CeEeEEecCc--chhcHHHHHHhhhc
Q 032841 66 DDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWEN--DIVSGRLEDH--EAHLEHKIKALLSA 131 (132)
Q Consensus 66 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~--g~~~~~~~~~--~~~~~~~l~~~l~~ 131 (132)
.+-..+.|..+... +.+| ..-|.+..+|.+.+++. |+.+.+..|. .......+++||+.
T Consensus 129 sk~~wllV~~Dtse-----g~~~--~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 129 SKQRWLLVLDDTSE-----GQPF--SAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred ccceEEEEeeccCC-----CCch--hhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 45566666665543 3333 35799999998888875 8887777654 23344557777753
No 272
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=61.87 E-value=8.2 Score=22.10 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.0
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
++||.|++.+-.+...
T Consensus 7 ~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 7 EHCPFCVKARMIAGLK 22 (71)
T ss_pred CCCcHhHHHHHHHHHc
Confidence 3999999888877664
No 273
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=59.70 E-value=29 Score=22.36 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=41.3
Q ss_pred cccccccchHHHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC
Q 032841 5 LSDATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR 78 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~ 78 (132)
.++.+..+++++ .|++++|.=.|| -|+.=. .-..|+++.++|. .++.++..=.++.
T Consensus 8 ~~~G~~v~l~~y---------~Gkv~LIVNvAs--------~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 8 DIDGKPVSLSKY---------KGKVLLIVNVAS--------KCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp BTTSSEEEGGGG---------TTSEEEEEEEES--------SSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCCCEECHHHc---------CCCEEEEEeccc--------ccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 445555566665 789999988998 999888 6678899999886 4666666655553
No 274
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=58.66 E-value=31 Score=20.82 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=26.4
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
.||.|++.+-.+.... -.+.++.++.....+ .+ .+......+|++..
T Consensus 26 ~sp~~~kv~~~L~~~g----l~~~~~~v~~~~~~~------~~--~~~np~~~vPvL~~ 72 (89)
T cd03055 26 FCPYAQRARLVLAAKN----IPHEVININLKDKPD------WF--LEKNPQGKVPALEI 72 (89)
T ss_pred CCchHHHHHHHHHHcC----CCCeEEEeCCCCCcH------HH--HhhCCCCCcCEEEE
Confidence 7999998877766642 134455555433211 11 12234567999864
No 275
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=57.83 E-value=51 Score=21.59 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=51.9
Q ss_pred CCChhHHhhhHHHHHHHHhCC--CCcEEEEEEeCCCc----CccCCCCCcccccccccc-ccceEEEEe---CCeEeEEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASP--DDIALLQAYVGDRP----TWRNPQHPFRVNSRFKLT-GVPTLFRWE---NDIVSGRL 114 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~--~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~v~-~vPt~~~~~---~g~~~~~~ 114 (132)
+--|.-..+.+++.++++.+. .+..++-||-+..+ +|.. .|+|. .=|.+=+.+ +...--+.
T Consensus 30 e~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWek---------tF~IDl~~PqIGVV~vtdadSvW~~m 100 (120)
T cd03074 30 EEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEK---------TFGIDLFRPQIGVVNVTDADSVWMEM 100 (120)
T ss_pred cCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHh---------hcCcccCCCceeeEecccccceeEec
Confidence 378889999999999999875 57899999988876 4443 34432 237665554 22222233
Q ss_pred cCc-chhcHHHHHHhhhc
Q 032841 115 EDH-EAHLEHKIKALLSA 131 (132)
Q Consensus 115 ~~~-~~~~~~~l~~~l~~ 131 (132)
.+. +....+.|+.||+.
T Consensus 101 ~~~~d~~t~~~Le~Wied 118 (120)
T cd03074 101 DDDEDLPTAEELEDWIED 118 (120)
T ss_pred ccccccCcHHHHHHHHHh
Confidence 333 45677888888863
No 276
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.71 E-value=24 Score=24.20 Aligned_cols=35 Identities=14% Similarity=-0.010 Sum_probs=26.0
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEE
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQA 73 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v 73 (132)
|.||.+ +-||.|--..+.+.++.++++-.+.+-.+
T Consensus 1 i~~~~D-------~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFD-------FSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEe-------CCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 346666 69999999999999998887634444333
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=55.13 E-value=10 Score=24.73 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=41.8
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccc--ccccceEEEEeCCeE---eEEecCc-ch
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFK--LTGVPTLFRWENDIV---SGRLEDH-EA 119 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--v~~vPt~~~~~~g~~---~~~~~~~-~~ 119 (132)
-||+|..++-.+...- .+..++.+.+|+...... . +....| -++.|++++=.+.-. .....|. -.
T Consensus 23 ~Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR~--~------vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi 93 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFP-DLRERLDVRRVDFPRPRQ--A------VIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFI 93 (112)
T ss_pred ECCchHHHHhHHhhCh-hhhhcccEEEeCCCCchH--H------HHHHhChhccCCCEEEeCCCCCCcccccccCCeEEe
Confidence 4999999888765532 233567888888765330 0 112222 458899987553211 1112222 12
Q ss_pred hcHHHHHHhhhc
Q 032841 120 HLEHKIKALLSA 131 (132)
Q Consensus 120 ~~~~~l~~~l~~ 131 (132)
.+.+.|..+|++
T Consensus 94 ~d~~~I~~~La~ 105 (112)
T PF11287_consen 94 DDPRRILRYLAE 105 (112)
T ss_pred CCHHHHHHHHHH
Confidence 345566666653
No 278
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=26 Score=25.75 Aligned_cols=44 Identities=9% Similarity=0.029 Sum_probs=29.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
..++++++.=++. ..|-|+..+++..+++.. ++.+...|+-+.+
T Consensus 137 ~a~~v~lFmKG~p----~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~De 180 (227)
T KOG0911|consen 137 KAKPVMLFMKGTP----EEPKCGFSRQLVGILQSH------NVNYTIFDVLTDE 180 (227)
T ss_pred ccCeEEEEecCCC----CcccccccHHHHHHHHHc------CCCeeEEeccCCH
Confidence 5677777776663 236788888777777664 4557777775544
No 279
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=54.29 E-value=41 Score=24.82 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=44.1
Q ss_pred ChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCeEeEEecCcchhcHHHHH
Q 032841 47 CPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDIVSGRLEDHEAHLEHKIK 126 (132)
Q Consensus 47 C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~~~~~~~~~~~~~~~~l~ 126 (132)
-.+|..++..++++++++++.+.+|-=|+.-.. .| --.++.+++|+.+..-...+....+.|.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS-------------~Y----sD~IVAlK~G~vv~~G~~~eii~~~~L~ 230 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFAS-------------CY----SDHIVALKNGKVVKQGSPDEIIQPEILS 230 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH-------------hh----hhheeeecCCEEEecCCHHHhcCHHHHH
Confidence 478999999999999999877777776664322 11 1246778888776544444445555555
Q ss_pred Hhh
Q 032841 127 ALL 129 (132)
Q Consensus 127 ~~l 129 (132)
+..
T Consensus 231 eiy 233 (252)
T COG4604 231 EIY 233 (252)
T ss_pred HHh
Confidence 543
No 280
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=54.19 E-value=7.9 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHH
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKT 60 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~ 60 (132)
+++-.+.-||...|.. ||.+|-.-..++..+
T Consensus 56 s~~~~~~AFWn~~e~~----wCEdCdddLQ~yhsl 86 (120)
T PF06279_consen 56 SKKNLMTAFWNECEQR----WCEDCDDDLQQYHSL 86 (120)
T ss_pred eccccEEEeccccchh----hhhcchHHHHHHhhe
Confidence 5677888999998887 999999887777765
No 281
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=53.44 E-value=20 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.4
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHH
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKT 60 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~ 60 (132)
|.+|.. |-|..|++....+++-
T Consensus 3 itiy~~-------p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGN-------PNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeC-------CCChHHHHHHHHHHHc
Confidence 455666 6999999999888774
No 282
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=49 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=24.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR 78 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~ 78 (132)
.+++++++||-. . -.|-|.+..=-|.+-++++. ....++.+..|+.
T Consensus 89 ~nk~vV~f~YP~----a---sTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s 135 (211)
T KOG0855|consen 89 GNKPVVLFFYPA----A---STPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDS 135 (211)
T ss_pred CCCcEEEEEecc----C---CCCCcccccccccccHHHHhhcCceEEeeccCch
Confidence 456888888754 1 34444444433444444433 2466777776653
No 283
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.60 E-value=52 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=24.5
Q ss_pred CChhHHhhh--HHHHHHHHhCC-CCcEEEEEEeCC
Q 032841 46 WCPDCVRAE--PVIYKTLEASP-DDIALLQAYVGD 77 (132)
Q Consensus 46 WC~~C~~~~--p~~~~~~~~~~-~~~~~~~v~~~~ 77 (132)
.|++||.-. +.+.++.+..+ .++.++.++.+.
T Consensus 80 TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~ 114 (420)
T COG3581 80 TGGPCRFGNYIELLRKALKDAGFRDVPVISLNSEN 114 (420)
T ss_pred CCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccc
Confidence 599999765 66777777766 689999999544
No 284
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=51.59 E-value=7.2 Score=21.12 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=14.5
Q ss_pred CChhHHhhhHHHHHHHHhC
Q 032841 46 WCPDCVRAEPVIYKTLEAS 64 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~ 64 (132)
+|.||+.-.+.+.++.++.
T Consensus 18 kC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp --HHHHCCCCHHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHHHHH
Confidence 8999999999888887764
No 285
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=50.70 E-value=15 Score=21.10 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=13.3
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
+|||.|++.+-.+...
T Consensus 14 s~sp~~~~v~~~L~~~ 29 (72)
T cd03054 14 SLSPECLKVETYLRMA 29 (72)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 5999999998877763
No 286
>PRK10853 putative reductase; Provisional
Probab=49.31 E-value=22 Score=23.23 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=18.8
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
|-|..|++....|++- ++.+-.+|+-
T Consensus 8 ~~C~t~rkA~~~L~~~------~i~~~~~d~~ 33 (118)
T PRK10853 8 KNCDTIKKARRWLEAQ------GIDYRFHDYR 33 (118)
T ss_pred CCCHHHHHHHHHHHHc------CCCcEEeehc
Confidence 6999999999888763 3445555653
No 287
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=48.98 E-value=6.6 Score=26.77 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.9
Q ss_pred CChhHHhhhHHHHH
Q 032841 46 WCPDCVRAEPVIYK 59 (132)
Q Consensus 46 WC~~C~~~~p~~~~ 59 (132)
-||+|+++.|.+.-
T Consensus 11 ~CPhCRQ~ipALtL 24 (163)
T TIGR02652 11 RCPHCRQNIPALTL 24 (163)
T ss_pred cCchhhcccchhee
Confidence 69999999998753
No 288
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=48.88 E-value=6.4 Score=26.77 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=11.9
Q ss_pred CChhHHhhhHHHHH
Q 032841 46 WCPDCVRAEPVIYK 59 (132)
Q Consensus 46 WC~~C~~~~p~~~~ 59 (132)
-||+|+++.|.+.-
T Consensus 8 ~CPhCRq~ipALtL 21 (161)
T PF09654_consen 8 QCPHCRQTIPALTL 21 (161)
T ss_pred cCchhhcccchhee
Confidence 69999999998753
No 289
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=45.85 E-value=99 Score=24.18 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCC------CcEEEEEEeCCCcCccCCCCCcccccc--ccc
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPD------DIALLQAYVGDRPTWRNPQHPFRVNSR--FKL 96 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~v 96 (132)
.+||.|.+.....+++.+ ...+-+++..+.+++++.+.+ ++.|..+|-.+ ++.+ ..-
T Consensus 248 ~sGKLVaLaVidEkhk~n---ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD------------~~nqilM~a 312 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFN---NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND------------LANQILMAA 312 (468)
T ss_pred cCCceEEEEEeccccccC---CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH------------HHHHHHHHh
Confidence 478888887776654442 234567888888888877642 35665555322 2222 233
Q ss_pred cccceEEEEeCCeEeEEecCc--chhcHHHHHHhhhc
Q 032841 97 TGVPTLFRWENDIVSGRLEDH--EAHLEHKIKALLSA 131 (132)
Q Consensus 97 ~~vPt~~~~~~g~~~~~~~~~--~~~~~~~l~~~l~~ 131 (132)
-+.|++++++.......+.+. +....+.+-+||++
T Consensus 313 ls~P~l~i~NtsnqeYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 313 LSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred hcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhc
Confidence 478999999876554555443 44566677788875
No 290
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.30 E-value=45 Score=23.04 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.4
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP 65 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~ 65 (132)
|.||.+ +=||.|--..+.+.++.++++
T Consensus 1 I~~~~D-------~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 1 IDIWSD-------VVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred CeEEec-------CcCccHHHHHHHHHHHHHhCC
Confidence 346666 689999999999999998884
No 291
>PRK10026 arsenate reductase; Provisional
Probab=43.89 E-value=31 Score=23.36 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=18.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
|-|..|++....|++- ++.+-.+|+
T Consensus 10 p~Cst~RKA~~wL~~~------gi~~~~~d~ 34 (141)
T PRK10026 10 PACGTSRNTLEMIRNS------GTEPTIIHY 34 (141)
T ss_pred CCCHHHHHHHHHHHHC------CCCcEEEee
Confidence 5899999999888764 344555554
No 292
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=43.88 E-value=41 Score=25.44 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChh-HHhhhHHHHHHHHhCC----CC--cEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPD-CVRAEPVIYKTLEASP----DD--IALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~-C~~~~p~~~~~~~~~~----~~--~~~~~v~~~ 76 (132)
.|+.++++|.=+ .||+ |-.....+-.+..+.. -. -.|+.||-.
T Consensus 138 ~Gkw~LiYFGFT--------hCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 138 LGKWSLIYFGFT--------HCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ccceEEEEeccc--------CCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 589999999877 8886 6555555555444332 11 257777653
No 293
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=43.46 E-value=33 Score=22.70 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=13.7
Q ss_pred CCChhHHhhhHHHHHH
Q 032841 45 SWCPDCVRAEPVIYKT 60 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~ 60 (132)
|-|..|++....|++-
T Consensus 9 p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 9 PGCANNARQKAALKAS 24 (126)
T ss_pred CCCHHHHHHHHHHHHC
Confidence 6899999999888764
No 294
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=24 Score=25.39 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=32.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeCCC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVGDR 78 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~ 78 (132)
.++.++++||=- .-.+.|--....+.+.+.++. .++.++.+++|..
T Consensus 32 ~gkw~VLff~P~-------DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 32 YGKWVVLFFYPA-------DFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred cCcEEEEEeccC-------CCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 357777777654 267777777777777766654 4788999998863
No 295
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=41.80 E-value=60 Score=21.93 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=36.8
Q ss_pred CChhHHh--hhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCcccccccc---ccccceEEEEeCCeEeEEecCc
Q 032841 46 WCPDCVR--AEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFK---LTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 46 WC~~C~~--~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
-|+ |.. .+|-.......-...-.++.|-.+...+=-+ .+..|= --+-|++.+|++|+.+..+.-+
T Consensus 45 VCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~------~aR~yf~~~pPSSPS~ALfKdGelvh~ieRh 114 (136)
T PF06491_consen 45 VCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATA------KAREYFEPYPPSSPSIALFKDGELVHFIERH 114 (136)
T ss_dssp SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHH------HHHHTSTTS---SSEEEEEETTEEEEEE-GG
T ss_pred ccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHH------HHHHhcCCCCCCCchheeeeCCEEEEEeehh
Confidence 688 543 4577766655543456888998876441000 111221 2356899999999987765433
No 296
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=41.33 E-value=41 Score=21.25 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=19.4
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDR 78 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~ 78 (132)
|-|..|+++...|++- ++.+-.+|+.+.
T Consensus 4 ~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 4 PNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 6899999999888762 567777887653
No 297
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=40.36 E-value=89 Score=21.77 Aligned_cols=42 Identities=14% Similarity=0.012 Sum_probs=28.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEeC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYVG 76 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~~ 76 (132)
.|+.++|.=.|| -|+.-- .-.-|+.++++|. .++.++..-++
T Consensus 24 ~GkVlLIVNtAS--------kCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 24 KGKVLLIVNTAS--------KCGFTP-QYEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred CCcEEEEEEccc--------ccCCcH-hHHHHHHHHHHHhhCCcEEEecccc
Confidence 789999999998 898744 2334666777776 34555544443
No 298
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=40.11 E-value=1.6e+02 Score=22.71 Aligned_cols=38 Identities=3% Similarity=-0.037 Sum_probs=30.4
Q ss_pred CeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCC
Q 032841 28 KANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGD 77 (132)
Q Consensus 28 ~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~ 77 (132)
...+|.+ .|+.|++....+..+.... ..+.++-||+..
T Consensus 77 ~~~lIEL-----------GsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~ 114 (319)
T TIGR03439 77 GSMLVEL-----------GSGNLRKVGILLEALERQK-KSVDYYALDVSR 114 (319)
T ss_pred CCEEEEE-----------CCCchHHHHHHHHHHHhcC-CCceEEEEECCH
Confidence 3468899 8999999999999986432 368899999865
No 299
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.93 E-value=56 Score=25.78 Aligned_cols=27 Identities=7% Similarity=0.008 Sum_probs=20.5
Q ss_pred ccccccccc-eEEEEeCCeEeEEecCcc
Q 032841 92 SRFKLTGVP-TLFRWENDIVSGRLEDHE 118 (132)
Q Consensus 92 ~~~~v~~vP-t~~~~~~g~~~~~~~~~~ 118 (132)
.++||-|-+ -.++|.+|+.+.++.+.+
T Consensus 317 aDIGIaG~~~~~~vf~~Gk~v~kv~~~~ 344 (360)
T PRK00366 317 ADIGIAGGNPKGPVFVDGEKIKTLPEEN 344 (360)
T ss_pred CcEeEecCCCceEEEECCEEeeeeChHh
Confidence 468887654 578889999988887654
No 300
>cd00062 FN2 Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. Fibronectin is composed of 3 types of modules, FN1,FN2 and FN3. The collagen binding domain contains four FN1 and two FN2 repeats.
Probab=39.26 E-value=15 Score=20.15 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=7.3
Q ss_pred CCCCCCCCChh
Q 032841 39 DPSTSLSWCPD 49 (132)
Q Consensus 39 ~~~~~~pWC~~ 49 (132)
++..|++||.-
T Consensus 25 ~~~~g~~WCat 35 (48)
T cd00062 25 GSNDGKLWCST 35 (48)
T ss_pred CCCCCCceeCC
Confidence 34457899963
No 301
>PF00040 fn2: Fibronectin type II domain; InterPro: IPR000562 Fibronectin is a multi-domain glycoprotein, found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes, that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Fibronectins are involved in a number of important functions e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The major part of the sequence of fibronectin consists of the repetition of three types of domains, which are called type I, II, and III []. Type II domain is approximately forty residues long, contains four conserved cysteines involved in disulphide bonds and is part of the collagen-binding region of fibronectin. In fibronectin the type II domain is duplicated. Type II domains have also been found in a range of proteins including blood coagulation factor XII; bovine seminal plasma proteins PDC-109 (BSP-A1/A2) and BSP-A3 []; cation-independent mannose-6-phosphate receptor []; mannose receptor of macrophages []; 180 Kd secretory phospholipase A2 receptor []. DEC-205 receptor []; 72 Kd and 92 Kd type IV collagenase (3.4.24.24 from EC) []; and hepatocyte growth factor activator [].; PDB: 1H8P_A 1PDC_A 1GXD_A 1CXW_A 1EAK_C 1CK7_A 3M7P_A 1E88_A 2FN2_A 3MQL_A ....
Probab=39.12 E-value=7.2 Score=20.72 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=7.3
Q ss_pred CCCCCCCCChh
Q 032841 39 DPSTSLSWCPD 49 (132)
Q Consensus 39 ~~~~~~pWC~~ 49 (132)
+..+|++||+-
T Consensus 19 ~~~~~~~WCat 29 (42)
T PF00040_consen 19 GSSDGRPWCAT 29 (42)
T ss_dssp TSSSSSEEEES
T ss_pred CCCCCCCCccc
Confidence 34457889964
No 302
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=39.05 E-value=65 Score=18.62 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=27.4
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEEEeCCe
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRWENDI 109 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~~~~g~ 109 (132)
.|+.|++.+-.+.+. +-.+.++.++..... .+.+ .|. +--....+|++. ++|.
T Consensus 8 ~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~-~~~~--~~~--~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 8 QSFSSQKVRLVIAEK----GLRCEEYDVSLPLSE-HNEP--WFM--RLNPTGEVPVLI--HGDN 60 (73)
T ss_pred CCccHHHHHHHHHHc----CCCCEEEEecCCcCc-cCCH--HHH--HhCcCCCCCEEE--ECCE
Confidence 799998887555554 223556666653321 0110 111 112245789985 3553
No 303
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.87 E-value=2e+02 Score=23.27 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCcCccCCCCCccccccccccccceEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFR 104 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~vPt~~~ 104 (132)
.+..-|=.|++- .|..|-..-..++-+.- +..++.-+.+|-.-.. + -.+.-+|-++||+++
T Consensus 115 ~g~~~FETy~Sl--------tC~nCPDVVQALN~msv-lNp~I~H~~IdGa~Fq---~------Evear~IMaVPtvfl 175 (520)
T COG3634 115 DGDFHFETYFSL--------TCHNCPDVVQALNLMSV-LNPRIKHTAIDGALFQ---D------EVEARNIMAVPTVFL 175 (520)
T ss_pred CCceeEEEEEEe--------eccCChHHHHHHHHHHh-cCCCceeEEecchhhH---h------HHHhccceecceEEE
Confidence 444444444444 67777666666655433 3447887777743322 2 113568999999866
No 304
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=36.57 E-value=21 Score=21.08 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=17.2
Q ss_pred cccccchHHHHHHHhhhCCCCCeEEEEEEe
Q 032841 7 DATVSSFDNVFDKFKSEAPKNKANFILFLA 36 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~v~F~a 36 (132)
..++.+|++.. .+...+.+++++++++..
T Consensus 3 v~~p~~~~D~~-~i~~~l~~g~~Vivnl~~ 31 (73)
T PF04472_consen 3 VFEPKSFEDAR-EIVDALREGKIVIVNLEN 31 (73)
T ss_dssp EEE-SSGGGHH-HHHHHHHTT--EEEE-TT
T ss_pred EEeeCCHHHHH-HHHHHHHcCCEEEEECCC
Confidence 34567888873 356555689999999954
No 305
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=36.32 E-value=44 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=17.0
Q ss_pred CCChhHHhhhHHHHHHHHhCC-CCcEEEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASP-DDIALLQA 73 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v 73 (132)
+=|+.|+ ..+..++++.+ +.+.+...
T Consensus 109 ~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 109 DVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred ccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 5899999 66667777765 33444433
No 306
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.61 E-value=5.2 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=26.3
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHH
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTL 61 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~ 61 (132)
+++-++.-||-..|.. ||.+|..-...+..++
T Consensus 56 skk~ll~afwn~eD~~----wCEDCeedLQ~fhsli 87 (120)
T COG4699 56 SKKDLLTAFWNNEDME----WCEDCEEDLQQFHSLI 87 (120)
T ss_pred cchhHHHHHhcchhhh----HHHHHHHHHHHHHHHh
Confidence 5667778899887777 9999999888888864
No 307
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.86 E-value=10 Score=28.71 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=6.9
Q ss_pred CCCCChhHHh
Q 032841 43 SLSWCPDCVR 52 (132)
Q Consensus 43 ~~pWC~~C~~ 52 (132)
+.-|||.|+.
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4458888863
No 308
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=33.54 E-value=76 Score=21.23 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEE
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALL 71 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~ 71 (132)
|-|+.|.. +++++.+.++ ++.+-
T Consensus 106 ~pC~SC~~---vi~qF~~~~p-ni~~~ 128 (133)
T PF14424_consen 106 PPCESCSN---VIEQFKKDFP-NIKVN 128 (133)
T ss_pred CcChhHHH---HHHHHHHHCC-CcEEE
Confidence 57999985 6667777777 55543
No 309
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=32.13 E-value=1.7e+02 Score=20.05 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=33.2
Q ss_pred chHHHHHHHhhh-CCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 12 SFDNVFDKFKSE-APKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
.+++.+.+.++. .......+..|++ +| ++..+.+.-.++++.++ +-++.|.+....
T Consensus 68 ~l~~~l~~~l~~~~~~~~~~l~iyFG---------~~-~~~~~~~lAr~lFe~F~--~PlL~v~~~~~~ 124 (153)
T PF14401_consen 68 ELDPLLQKALAKLIKSERFELSIYFG---------QT-PDPRLERLARQLFERFP--CPLLEVEFVRDD 124 (153)
T ss_pred HHhHHHHHHHhcccCCceEEEEEEEC---------CC-CCHHHHHHHHHHHHhCC--CceEEEEEEecC
Confidence 344554444443 2344555555566 67 66777777778888876 456666665443
No 310
>smart00059 FN2 Fibronectin type 2 domain. One of three types of internal repeat within the plasma protein, fibronectin. Also occurs in coagulation factor XII, 2 type IV collagenases, PDC-109, and cation-independent mannose-6-phosphate and secretory phospholipase A2 receptors. In fibronectin, PDC-109, and the collagenases, this domain contributes to collagen-binding function.
Probab=31.98 E-value=23 Score=19.51 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=7.3
Q ss_pred CCCCCCCCChh
Q 032841 39 DPSTSLSWCPD 49 (132)
Q Consensus 39 ~~~~~~pWC~~ 49 (132)
++..|++||.-
T Consensus 26 ~~~~g~~WCat 36 (49)
T smart00059 26 GRSDGMLWCST 36 (49)
T ss_pred CCcCCCceecc
Confidence 44557799963
No 311
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=31.39 E-value=50 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHhhhCCCCCeEEEEEEeeCCCCCCCCCChh
Q 032841 15 NVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPD 49 (132)
Q Consensus 15 ~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~ 49 (132)
++++.+........|.+|.|||+ |.||+
T Consensus 398 ~~~~~L~~l~~~~gp~iVlffap-------p~yP~ 425 (553)
T COG4187 398 QLTEWLVGLAGLSGPAIVLFFAP-------PHYPH 425 (553)
T ss_pred HHHHHHHhhccccCCeEEEEecC-------CCCCc
Confidence 33455555555677899999999 89994
No 312
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=31.28 E-value=29 Score=29.18 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhhHH-HHH--HHHhCCCCcEEEEEEeCCCcCccCCCC---Cccccccccccc
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAEPV-IYK--TLEASPDDIALLQAYVGDRPTWRNPQH---PFRVNSRFKLTG 98 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~v~~ 98 (132)
.+++|+|+...-+ -|-.|..|+.. ++. ..+...++++-++||.++++ |-+. .|-+ ...|--|
T Consensus 110 ~enkpifLsvgys--------tchwchvmekesfeneet~~ilnenfv~ikVDREERP---DVDK~YM~Fv~-assg~GG 177 (786)
T KOG2244|consen 110 AENKPIFLSVGYS--------TCHWCHVMEKESFENEETGEILNENFVKIKVDREERP---DVDKLYMAFVV-ASSGGGG 177 (786)
T ss_pred hcCCCEEEEcccc--------cchheeeeecccccCHHHHHHHhhhhhhhccChhhcC---chHHHHHHHHH-hccCCCC
Confidence 3889999988555 79999988753 222 33334445555666666655 2111 1111 2456667
Q ss_pred cceEEEEeC
Q 032841 99 VPTLFRWEN 107 (132)
Q Consensus 99 vPt~~~~~~ 107 (132)
.|.-+++..
T Consensus 178 WPmsV~LTP 186 (786)
T KOG2244|consen 178 WPMSVFLTP 186 (786)
T ss_pred CceeEEeCC
Confidence 777766653
No 313
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=30.32 E-value=73 Score=22.37 Aligned_cols=28 Identities=7% Similarity=-0.165 Sum_probs=18.2
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
++|+.|++..-.++... -.+.++.+|..
T Consensus 17 ~~s~~~~rv~~~L~e~g----l~~e~~~v~~~ 44 (211)
T PRK09481 17 PTDIYSHQVRIVLAEKG----VSVEIEQVEKD 44 (211)
T ss_pred CCChhHHHHHHHHHHCC----CCCEEEeCCcc
Confidence 38999999887666542 23555666653
No 314
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=29.93 E-value=15 Score=26.48 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=9.1
Q ss_pred CChhHHhhhH
Q 032841 46 WCPDCVRAEP 55 (132)
Q Consensus 46 WC~~C~~~~p 55 (132)
|||.|++++.
T Consensus 13 WCPnaka~e~ 22 (205)
T PF07895_consen 13 WCPNAKALET 22 (205)
T ss_pred cCcCcCcccc
Confidence 9999998876
No 315
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.93 E-value=63 Score=25.36 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=19.0
Q ss_pred cccccccc--ceEEEEeCCeEeEEecCc
Q 032841 92 SRFKLTGV--PTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 92 ~~~~v~~v--Pt~~~~~~g~~~~~~~~~ 117 (132)
.++||-+- -..++|++|+.+.++.+.
T Consensus 308 ADiGIaggg~g~~~lF~~G~~~~kv~~~ 335 (346)
T TIGR00612 308 ADIGISGGGTGSAILFKRGKPKAKQPET 335 (346)
T ss_pred cCeeeecCCCCceEEEECCEEeEecCHH
Confidence 46888754 467889999988777654
No 316
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=28.67 E-value=1.3e+02 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.2
Q ss_pred eEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 29 ANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 29 ~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
-.-++|.|+ |.|.++.++..|-.+-.++++..-
T Consensus 453 rqT~mftat---------------m~p~verlar~ylr~pv~vtig~~ 485 (673)
T KOG0333|consen 453 RQTVMFTAT---------------MPPAVERLARSYLRRPVVVTIGSA 485 (673)
T ss_pred eEEEEEecC---------------CChHHHHHHHHHhhCCeEEEeccC
Confidence 556889886 457788888887655566666643
No 317
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.49 E-value=58 Score=18.19 Aligned_cols=27 Identities=4% Similarity=0.069 Sum_probs=17.3
Q ss_pred CCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 45 SWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 45 pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
|.||.|++.+-.+....- ......++.
T Consensus 7 ~~~~~~~~v~~~l~~~~~----~~~~~~i~~ 33 (73)
T cd03056 7 PLSGNCYKVRLLLALLGI----PYEWVEVDI 33 (73)
T ss_pred CCCccHHHHHHHHHHcCC----CcEEEEecC
Confidence 489999988777766421 244455554
No 318
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=27.93 E-value=28 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=17.6
Q ss_pred ccccccccceEEEEeCCeEeEEecCc
Q 032841 92 SRFKLTGVPTLFRWENDIVSGRLEDH 117 (132)
Q Consensus 92 ~~~~v~~vPt~~~~~~g~~~~~~~~~ 117 (132)
.+|+|+.||++++...+ .-+++.|.
T Consensus 156 ~~F~I~~VPafVv~C~~-~yD~I~GN 180 (212)
T PRK13730 156 SQYGIRSVPALVVFCSQ-GYDIIRGN 180 (212)
T ss_pred HhcCCccccEEEEEcCC-CCCEEEec
Confidence 58999999999997542 23445554
No 319
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.90 E-value=12 Score=28.04 Aligned_cols=13 Identities=31% Similarity=0.984 Sum_probs=9.2
Q ss_pred CCCCChhHHhhhH
Q 032841 43 SLSWCPDCVRAEP 55 (132)
Q Consensus 43 ~~pWC~~C~~~~p 55 (132)
+.-|||.|+...|
T Consensus 254 ~ty~Cp~CQ~~~~ 266 (269)
T PRK14811 254 GTHFCPQCQPLRP 266 (269)
T ss_pred CcEECCCCcCCCC
Confidence 3348999987665
No 320
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.12 E-value=1.6e+02 Score=18.22 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=16.1
Q ss_pred HHhhhHHHHHHHHhCCCCcEEEEEEeCCCc
Q 032841 50 CVRAEPVIYKTLEASPDDIALLQAYVGDRP 79 (132)
Q Consensus 50 C~~~~p~~~~~~~~~~~~~~~~~v~~~~~~ 79 (132)
++.-...+..+.+. .++.|-.+|++..+
T Consensus 15 ~k~~~~~v~~lL~~--k~I~f~eiDI~~d~ 42 (92)
T cd03030 15 IKKRQQEVLGFLEA--KKIEFEEVDISMNE 42 (92)
T ss_pred HHHHHHHHHHHHHH--CCCceEEEecCCCH
Confidence 33333344444444 36889999987644
No 321
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=26.87 E-value=86 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=18.3
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEE
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQA 73 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v 73 (132)
+||-|......+.+.- -.+.+.|+.+
T Consensus 6 ~C~lC~~~~~~l~~~d--~~~~l~~~~~ 31 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRD--RGGRLRFVDI 31 (114)
T ss_pred CCHhHHHHHHHHHhcC--CCCCEEEEEC
Confidence 8999999998888872 1234565544
No 322
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=26.47 E-value=1.9e+02 Score=24.26 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=41.4
Q ss_pred CCCeEEEEEEeeCCCCCCCCCCh--hHHhhhHHHHHHHHhCC-CCcEEEEEEeCCCc
Q 032841 26 KNKANFILFLADKDPSTSLSWCP--DCVRAEPVIYKTLEASP-DDIALLQAYVGDRP 79 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~--~C~~~~p~~~~~~~~~~-~~~~~~~v~~~~~~ 79 (132)
..+..||.-.+|+|...|.|.|. -|..+...-+.+.++++ ..+.++++|+....
T Consensus 358 pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG 414 (622)
T COG1148 358 PKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG 414 (622)
T ss_pred CceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC
Confidence 45678888899999999999995 36666665666667787 46899999987654
No 323
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=26.21 E-value=44 Score=19.00 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=15.8
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHH
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCV 51 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~ 51 (132)
....+.|.|+++.+-+ |+.+++
T Consensus 37 ~~~~~~V~Ffg~~~~a----wv~~~~ 58 (63)
T smart00293 37 FENLYPVLFFGDKDTA----WISSSK 58 (63)
T ss_pred CCCEEEEEEeCCCCEE----EECccc
Confidence 4567889999986555 877653
No 324
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.00 E-value=45 Score=19.15 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=22.0
Q ss_pred HhhhCCCCCeEEE----EEEeeCCCCCCCCCChhHHhhhH
Q 032841 20 FKSEAPKNKANFI----LFLADKDPSTSLSWCPDCVRAEP 55 (132)
Q Consensus 20 ~~~~~~~~~~v~v----~F~a~~~~~~~~pWC~~C~~~~p 55 (132)
+.+++-.|.+|+- .|-=++|+.. -|=||.|+.+-.
T Consensus 17 I~esav~G~pVvALCGk~wvp~rdp~~-~PVCP~Ck~iye 55 (58)
T PF11238_consen 17 IAESAVMGTPVVALCGKVWVPTRDPKP-FPVCPECKEIYE 55 (58)
T ss_pred HHHHHhcCceeEeeeCceeCCCCCCCC-CCCCcCHHHHHH
Confidence 4444446776654 3444556665 889999997654
No 325
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=25.84 E-value=53 Score=19.31 Aligned_cols=29 Identities=3% Similarity=0.048 Sum_probs=18.8
Q ss_pred CCCChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 44 LSWCPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 44 ~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
++||+.|++.+-.+....- ....+.++..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i----~~~~~~~~~~ 41 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL----EYKTVPVEFP 41 (84)
T ss_pred CCcCChhHHHHHHHHhCCC----CCeEEEecCC
Confidence 4799999998887776421 2345555543
No 326
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=24.59 E-value=2e+02 Score=18.36 Aligned_cols=28 Identities=11% Similarity=-0.075 Sum_probs=14.5
Q ss_pred CChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 46 WCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
-+++++-..-.+-...+..+ ..+..|++
T Consensus 95 ~~~~dq~gl~~~l~~L~~~~--~~I~~v~~ 122 (124)
T PF08874_consen 95 DNAYDQLGLRYLLSLLKDKP--NRIYVVNV 122 (124)
T ss_pred CCHHHHHHHHHHHHHhcCCC--CeEEEEeC
Confidence 45666655555555544433 34555554
No 327
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.11 E-value=1.5e+02 Score=20.82 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEE
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQ 72 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~ 72 (132)
.|+.++|.=.|| -|+.=..--..++.+.++|. .++.++.
T Consensus 33 rGkV~LiVNVAS--------~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILa 72 (171)
T KOG1651|consen 33 RGKVVLIVNVAS--------QCGLTESQYTELNELYEKYKDQGLEILA 72 (171)
T ss_pred CCeEEEEEEccc--------ccccchhcchhHHHHHHHHhhCCeEEEE
Confidence 678777777887 88877655567777777764 3444433
No 328
>PRK13683 hypothetical protein; Provisional
Probab=23.79 E-value=1e+02 Score=19.19 Aligned_cols=27 Identities=0% Similarity=0.251 Sum_probs=16.1
Q ss_pred cchHHHHHHHhhhCCCCCeEEEEEEee
Q 032841 11 SSFDNVFDKFKSEAPKNKANFILFLAD 37 (132)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~v~v~F~a~ 37 (132)
.+-+.++++++++.+++.|-++...+.
T Consensus 23 edA~alYq~I~~am~sg~P~llELtCe 49 (87)
T PRK13683 23 EDAEALYQQIRQAMRSGNPRLLELTCE 49 (87)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 344455555555556677777777554
No 329
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.22 E-value=30 Score=27.27 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=30.3
Q ss_pred ChhHHhhhHHHHHHHHh----CC---CCcEEEEEEeC--CCcCccCCCCCcccccccccc-ccc-eEEEEeCCeEeEEec
Q 032841 47 CPDCVRAEPVIYKTLEA----SP---DDIALLQAYVG--DRPTWRNPQHPFRVNSRFKLT-GVP-TLFRWENDIVSGRLE 115 (132)
Q Consensus 47 C~~C~~~~p~~~~~~~~----~~---~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~v~-~vP-t~~~~~~g~~~~~~~ 115 (132)
||.|-+..=-++++.++ .. .++++.-.-+- ...+- ...+||+- +=| -.++|++|+.+.+..
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa--------~~AD~GiaGgg~g~~~lf~~g~~v~k~~ 342 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEA--------KDADIGIAGGGKGKGILFKKGEVVKKVI 342 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHC--------TTSSEEEE-E-TTCEEEECTTEEEEEE-
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchh--------hhCceeeecCCCCeEEEEECCEEEEecC
Confidence 88887776555555443 32 24444433322 11111 12468887 545 488999999999883
Q ss_pred Cc
Q 032841 116 DH 117 (132)
Q Consensus 116 ~~ 117 (132)
..
T Consensus 343 ~e 344 (359)
T PF04551_consen 343 PE 344 (359)
T ss_dssp CS
T ss_pred CH
Confidence 33
No 330
>PF10050 DUF2284: Predicted metal-binding protein (DUF2284); InterPro: IPR019271 This entry represents a family of predicted metal-binding bacterial and archaeal proteins with no known function.
Probab=22.97 E-value=1.1e+02 Score=20.99 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCCC-ChhHHhhhHHHHHHHHhCCCCcEEEEEEeC
Q 032841 43 SLSW-CPDCVRAEPVIYKTLEASPDDIALLQAYVG 76 (132)
Q Consensus 43 ~~pW-C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~ 76 (132)
|+.| |||=.-....++++..+|. .+.++...+.
T Consensus 28 g~~~~CPP~~~~~~e~~~~l~~Y~-~all~~~~~~ 61 (166)
T PF10050_consen 28 GKNWSCPPYVPDPEECREMLREYK-KALLFQTKVP 61 (166)
T ss_pred CCCCCCccCCCCHHHHHHHHHhCC-eEEEEEEEec
Confidence 3357 8876555555555677886 5666666553
No 331
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.90 E-value=2.1e+02 Score=22.11 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-CCcEEEEEEe
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-DDIALLQAYV 75 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-~~~~~~~v~~ 75 (132)
.|||||+.|-.. -=|.++.+...+.+.+.+.+ +++.++.+..
T Consensus 157 dGKPv~~Iy~p~--------~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPG--------DIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcc--------cccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 689998888775 56889999999999888765 5677766664
No 332
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=22.69 E-value=20 Score=26.84 Aligned_cols=9 Identities=33% Similarity=1.147 Sum_probs=5.5
Q ss_pred CCCChhHHh
Q 032841 44 LSWCPDCVR 52 (132)
Q Consensus 44 ~pWC~~C~~ 52 (132)
.-|||.|+.
T Consensus 265 t~~CP~CQ~ 273 (274)
T PRK01103 265 TFFCPRCQK 273 (274)
T ss_pred cEECcCCCC
Confidence 346777764
No 333
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=22.24 E-value=1.8e+02 Score=19.83 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=24.7
Q ss_pred HHHhhhCCCCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC-----CCcEEEEEE
Q 032841 18 DKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP-----DDIALLQAY 74 (132)
Q Consensus 18 ~~~~~~~~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~-----~~~~~~~v~ 74 (132)
.+++. ..+|-+|-..| |...|+++...+.++.++.. ..+.++.||
T Consensus 56 ~~~i~---~~kP~vI~v~g---------~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 56 KKFIE---KHKPDVIAVGG---------NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHH---HH--SEEEE-----------SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHH---HcCCeEEEEcC---------CChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 34454 34444555555 89999999999999877653 234555554
No 334
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=22.13 E-value=2.6e+02 Score=18.82 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred CCCCeEEEEEEeeCCCCCCCCCChhHHhhh--HHHHHHHHhCCCCcEEEEEEeCCCcC------ccCCCC---Ccccccc
Q 032841 25 PKNKANFILFLADKDPSTSLSWCPDCVRAE--PVIYKTLEASPDDIALLQAYVGDRPT------WRNPQH---PFRVNSR 93 (132)
Q Consensus 25 ~~~~~v~v~F~a~~~~~~~~pWC~~C~~~~--p~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~---~~~~~~~ 93 (132)
++.|+++|+.+++++.- --..|+... +.+-++.+ .++.+...|+...+. |-.... .+..+..
T Consensus 19 ~e~K~L~VYLH~~~~~~----t~~Fc~~~L~se~Vi~fl~---~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~ 91 (136)
T cd02990 19 RDRKLLAIYLHHDESVL----SNVFCSQLLCAESIVQYLS---QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRN 91 (136)
T ss_pred hhcceEEEEEcCCCCcc----HHHHHHHHhcCHHHHHHHH---cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHh
Confidence 47899999999974321 124555542 44444443 467777788755320 000001 1123456
Q ss_pred ccccccceEEEEeCC----eEeEEecCc
Q 032841 94 FKLTGVPTLFRWEND----IVSGRLEDH 117 (132)
Q Consensus 94 ~~v~~vPt~~~~~~g----~~~~~~~~~ 117 (132)
++...+|.+.++-.. +.+.++.|.
T Consensus 92 ~~~~~fP~~avI~~~~~~~~vl~~i~G~ 119 (136)
T cd02990 92 IKTDQLPAILIIMGKRSSNEVLNVIQGN 119 (136)
T ss_pred cCcCCCCeEEEEEecCCceEEEEEEECC
Confidence 789999998887532 456777776
No 335
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.02 E-value=2.3e+02 Score=19.87 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=26.3
Q ss_pred EEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCCCCcEEEEEEe
Q 032841 32 ILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYV 75 (132)
Q Consensus 32 v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~~~~~~~~v~~ 75 (132)
|.||.+ .=||.|--....++++.+..+-.+.+--+.+
T Consensus 3 Id~~~D-------~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYD-------VVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEe-------CCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 556666 6899999999999998876553444444444
No 336
>PF06527 TniQ: TniQ; InterPro: IPR009492 This entry consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 that carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons [].
Probab=21.70 E-value=40 Score=21.62 Aligned_cols=10 Identities=30% Similarity=1.152 Sum_probs=8.2
Q ss_pred CCCCCChhHH
Q 032841 42 TSLSWCPDCV 51 (132)
Q Consensus 42 ~~~pWC~~C~ 51 (132)
++..|||.|-
T Consensus 94 ~~~r~CP~Cl 103 (136)
T PF06527_consen 94 SRRRFCPACL 103 (136)
T ss_pred CCCEEChHHH
Confidence 4567999998
No 337
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=21.38 E-value=89 Score=20.12 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.3
Q ss_pred CCChhHHhhhHHHHH
Q 032841 45 SWCPDCVRAEPVIYK 59 (132)
Q Consensus 45 pWC~~C~~~~p~~~~ 59 (132)
+.||.|++-+..+..
T Consensus 32 s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 32 SQCPSCNKKRAELAQ 46 (104)
T ss_pred ccChHHHHHHHHHHH
Confidence 389999988665554
No 338
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.16 E-value=1.6e+02 Score=22.41 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=14.9
Q ss_pred CCCeEEEEEEeeCCCCCCCCCChhHHhhhHHHHHHHHhCC
Q 032841 26 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASP 65 (132)
Q Consensus 26 ~~~~v~v~F~a~~~~~~~~pWC~~C~~~~p~~~~~~~~~~ 65 (132)
++...+=++|++ ..+||| ......+.++++
T Consensus 240 en~d~l~Fyygt-----~DgW~p-----~~~~d~~kdd~~ 269 (301)
T KOG3975|consen 240 ENLDSLWFYYGT-----NDGWVP-----SHYYDYYKDDVP 269 (301)
T ss_pred hcCcEEEEEccC-----CCCCcc-----hHHHHHHhhhcc
Confidence 333333444555 335999 344444444454
No 339
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.96 E-value=25 Score=26.39 Aligned_cols=7 Identities=43% Similarity=1.587 Sum_probs=4.6
Q ss_pred CCChhHH
Q 032841 45 SWCPDCV 51 (132)
Q Consensus 45 pWC~~C~ 51 (132)
=|||.|+
T Consensus 265 ~~CP~CQ 271 (272)
T PRK14810 265 HYCPHCQ 271 (272)
T ss_pred EECcCCc
Confidence 3677776
No 340
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=20.64 E-value=71 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.8
Q ss_pred CChhHHhhhHHHHHHHHhC
Q 032841 46 WCPDCVRAEPVIYKTLEAS 64 (132)
Q Consensus 46 WC~~C~~~~p~~~~~~~~~ 64 (132)
+|.||+.-.|.+.++..+.
T Consensus 369 QCtPCReGt~~L~~iL~~i 387 (461)
T PTZ00304 369 QCTPCREGTPWLVKMMERF 387 (461)
T ss_pred CCCChHhHHHHHHHHHHHH
Confidence 8999999999999987764
No 341
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=20.63 E-value=40 Score=22.35 Aligned_cols=7 Identities=29% Similarity=1.104 Sum_probs=5.1
Q ss_pred CCCCChh
Q 032841 43 SLSWCPD 49 (132)
Q Consensus 43 ~~pWC~~ 49 (132)
|+|||+.
T Consensus 86 ~kp~~~~ 92 (126)
T TIGR01689 86 GKPWCGH 92 (126)
T ss_pred CCCcCCC
Confidence 5689973
No 342
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=20.45 E-value=2.4e+02 Score=17.79 Aligned_cols=14 Identities=36% Similarity=0.947 Sum_probs=10.0
Q ss_pred CChhHHhh-hHHHHH
Q 032841 46 WCPDCVRA-EPVIYK 59 (132)
Q Consensus 46 WC~~C~~~-~p~~~~ 59 (132)
-||+|+++ ...|..
T Consensus 10 lCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 10 LCPDCRRFITNQLFP 24 (108)
T ss_pred cCHhHHHHHHHHHHH
Confidence 89999986 344554
No 343
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.42 E-value=25 Score=26.49 Aligned_cols=7 Identities=57% Similarity=2.152 Sum_probs=4.4
Q ss_pred CCChhHH
Q 032841 45 SWCPDCV 51 (132)
Q Consensus 45 pWC~~C~ 51 (132)
-|||.|+
T Consensus 275 ~~CP~CQ 281 (282)
T PRK13945 275 HWCPNCQ 281 (282)
T ss_pred EECCCCc
Confidence 3677665
No 344
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.41 E-value=1.8e+02 Score=16.29 Aligned_cols=15 Identities=7% Similarity=-0.008 Sum_probs=11.6
Q ss_pred CCChhHHhhhHHHHH
Q 032841 45 SWCPDCVRAEPVIYK 59 (132)
Q Consensus 45 pWC~~C~~~~p~~~~ 59 (132)
+.|+.|++.+-.+..
T Consensus 7 ~~s~~~~~~~~~l~~ 21 (73)
T cd03049 7 PTSPYVRKVRVAAHE 21 (73)
T ss_pred CCCcHHHHHHHHHHH
Confidence 489999988776665
No 345
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.19 E-value=40 Score=23.76 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=7.8
Q ss_pred CCCCChhHH
Q 032841 43 SLSWCPDCV 51 (132)
Q Consensus 43 ~~pWC~~C~ 51 (132)
|||-||-|-
T Consensus 153 GRP~CPlCg 161 (171)
T PF11290_consen 153 GRPPCPLCG 161 (171)
T ss_pred CCCCCCCCC
Confidence 889999995
No 346
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=20.16 E-value=77 Score=25.98 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=32.7
Q ss_pred ccccccc---ccceEEEEeC--CeEeEEecCcchhcHHHHHHhhhc
Q 032841 91 NSRFKLT---GVPTLFRWEN--DIVSGRLEDHEAHLEHKIKALLSA 131 (132)
Q Consensus 91 ~~~~~v~---~vPt~~~~~~--g~~~~~~~~~~~~~~~~l~~~l~~ 131 (132)
..+|||+ .-|++.+++. ..++..++|.+.+.+++++.++++
T Consensus 386 G~ryGVklkA~APSiHmIradIeTEiaPIvGsE~QseeLv~yl~~~ 431 (492)
T PF09547_consen 386 GNRYGVKLKASAPSIHMIRADIETEIAPIVGSEKQSEELVKYLLEE 431 (492)
T ss_pred cCccceEEEEeccchheeeccceeEecCcccCHHHHHHHHHHHHHh
Confidence 4678887 6899999986 445778899988888888887764
Done!