BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032842
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P2W|A Chain A, Unliganded Form Of Polo-Like Kinase I Polo-Box Domain
pdb|3P2Z|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Plhspta
Phosphopeptide From Pbip1
pdb|3P34|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Mqsptpl
Phosphopeptide
pdb|3P35|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P35|B Chain B, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P35|C Chain C, Polo-Like Kinase I Polo-Box Domain In Complex With Mqspspl
Phosphopeptide
pdb|3P36|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Dpplhspta Phosphopeptide From Pbip1
pdb|3P37|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3P37|B Chain B, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3P37|C Chain C, Polo-Like Kinase I Polo-Box Domain In Complex With
Fdpplhspta Phosphopeptide From Pbip1
pdb|3Q1I|A Chain A, Polo-Like Kinase I Polo-Box Domain In Complex With
Fmpppmspsm Phosphopeptide From Tcerg1
pdb|4E67|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With
Hydrocinnamoyl-Derivatized Plhspta Peptide
pdb|4E9C|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With Ldpplhspta
Phosphopeptide
pdb|4E9D|A Chain A, The Structure Of The Polo-Box Domain (Pbd) Of Polo-Like
Kinase 1 (Plk1) In Complex With
3-(1-Benzothiophen-2-Yl)propanoyl-Derivatized Dpplhspta
Peptide
Length = 232
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 52 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 95
>pdb|1Q4K|B Chain B, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
pdb|1Q4K|A Chain A, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
pdb|1Q4K|C Chain C, The Polo-Box Domain Of Plk1 In Complex With A Phospho-
Peptide
Length = 259
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 70 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 113
>pdb|4H5X|B Chain B, Human Plk1-Pbd With A Glycerol Bound At The Phophopeptide
Binding Site
pdb|4H5X|A Chain A, Human Plk1-Pbd With A Glycerol Bound At The Phophopeptide
Binding Site
pdb|4H71|B Chain B, Human Plk1-Pbd In Complex With Poloxime
((E)-4-(Hydroxyimino)-2-
Isopropyl-5-Methylcyclohexa-2,5-Dienone)
pdb|4H71|A Chain A, Human Plk1-Pbd In Complex With Poloxime
((E)-4-(Hydroxyimino)-2-
Isopropyl-5-Methylcyclohexa-2,5-Dienone)
pdb|4HCO|B Chain B, Human Plk1-Pbd In Complex With Thymoquinone At The
Phophopeptide Binding Site
pdb|4HCO|A Chain A, Human Plk1-Pbd In Complex With Thymoquinone At The
Phophopeptide Binding Site
Length = 240
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 51 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 94
>pdb|3FVH|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With
Ac-Lhspta-Nh2 Peptide
pdb|3RQ7|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With A
C6h5(Ch2)8- Derivatized Peptide Inhibitor
Length = 237
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 48 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 91
>pdb|1UMW|A Chain A, Structure Of A Human Plk1 Polo-Box DomainPHOSPHOPEPTIDE
Complex
pdb|1UMW|B Chain B, Structure Of A Human Plk1 Polo-Box DomainPHOSPHOPEPTIDE
Complex
pdb|1Q4O|A Chain A, The Structure Of The Polo Box Domain Of Human Plk1
pdb|1Q4O|B Chain B, The Structure Of The Polo Box Domain Of Human Plk1
pdb|3HIK|A Chain A, Structure Of Human Plk1-Pbd In Complex With Plhspt
pdb|4DFW|A Chain A, Oxime-Based Post Solid-Phase Peptide Diversification:
Identification Of High Affinity Polo-Like Kinase 1
(Plk1) Polo-Box Domain Binding Peptides
Length = 237
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 48 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 91
>pdb|2OGQ|A Chain A, Molecular And Structural Basis Of Plk1 Substrate
Recognition: Implications In Centrosomal Localization
pdb|2OJX|A Chain A, Molecular And Structural Basis Of Polo-Like Kinase 1
Substrate Recognition: Implications In Centrosomal
Localization
pdb|3BZI|A Chain A, Molecular And Structural Basis Of Polo-Like Kinase 1
Substrate Recognition: Implications In Centrosomal
Localization
Length = 239
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 50 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 93
>pdb|3C5L|A Chain A, Polo-Like Kinase 1 Polo Box Domain In Complex With Pphspt
Peptide
Length = 221
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 42 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 85
>pdb|3HIH|A Chain A, Structure Of Human Plk1-pbd With Glycerol And Sulfate In
The Phophopeptide Binding Site
pdb|3HIH|B Chain B, Structure Of Human Plk1-pbd With Glycerol And Sulfate In
The Phophopeptide Binding Site
Length = 223
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 WVAAYSEWKILYVLCKDKNGLLRKDTVRAVY--DGSLFEHMEKE 124
WV ++ + Y LC + G+L D+ R + DG +++E++
Sbjct: 44 WVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERD 87
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 21 IKNIHKSKHGSDSGVYDSEGRFVPSKFE 48
+KN+ K K+G D+ EG F P+ E
Sbjct: 191 LKNVIKEKYGKDATNVGDEGGFAPNILE 218
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 21 IKNIHKSKHGSDSGVYDSEGRFVPSKFE 48
+KN+ K K+G D+ EG F P+ E
Sbjct: 192 LKNVIKEKYGKDATNVGDEGGFAPNILE 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,319,228
Number of Sequences: 62578
Number of extensions: 173947
Number of successful extensions: 409
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 80
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 46 (22.3 bits)