Query 032842
Match_columns 132
No_of_seqs 103 out of 160
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05042 Caleosin: Caleosin re 100.0 8E-73 1.7E-77 444.0 10.8 123 1-123 52-174 (174)
2 PF13499 EF-hand_7: EF-hand do 95.2 0.07 1.5E-06 33.7 5.2 65 46-113 1-66 (66)
3 cd00051 EFh EF-hand, calcium b 94.6 0.27 5.9E-06 28.4 6.3 59 47-112 2-61 (63)
4 PF13405 EF-hand_6: EF-hand do 94.3 0.049 1.1E-06 30.7 2.5 27 46-72 1-27 (31)
5 PF00036 EF-hand_1: EF hand; 93.5 0.083 1.8E-06 30.2 2.5 27 47-73 2-28 (29)
6 PF01023 S_100: S-100/ICaBP ty 93.5 0.067 1.4E-06 33.5 2.2 28 47-74 8-37 (44)
7 smart00054 EFh EF-hand, calciu 92.0 0.3 6.6E-06 24.2 3.2 27 47-73 2-28 (29)
8 cd05024 S-100A10 S-100A10: A s 88.4 0.57 1.2E-05 33.7 3.1 26 48-74 11-36 (91)
9 PTZ00184 calmodulin; Provision 88.4 2.6 5.5E-05 29.3 6.4 64 44-113 46-110 (149)
10 smart00027 EH Eps15 homology d 88.0 1.6 3.4E-05 30.0 5.1 57 45-110 10-67 (96)
11 cd00052 EH Eps15 homology doma 86.8 2.7 6E-05 25.8 5.3 54 47-109 1-55 (67)
12 PF13202 EF-hand_5: EF hand; P 84.5 1 2.2E-05 24.7 2.2 24 48-71 2-25 (25)
13 PF13833 EF-hand_8: EF-hand do 84.0 1.6 3.4E-05 26.6 3.1 32 42-73 22-53 (54)
14 PTZ00183 centrin; Provisional 83.6 5.5 0.00012 28.2 6.3 60 47-112 55-115 (158)
15 cd05025 S-100A1 S-100A1: S-100 82.9 2.5 5.3E-05 28.8 4.1 65 43-109 7-74 (92)
16 cd05026 S-100Z S-100Z: S-100Z 82.7 3.6 7.7E-05 28.5 4.9 64 46-111 11-77 (93)
17 PTZ00184 calmodulin; Provision 82.7 7.1 0.00015 27.1 6.4 61 45-112 11-72 (149)
18 PTZ00183 centrin; Provisional 82.4 6.3 0.00014 27.9 6.2 64 45-115 90-154 (158)
19 KOG0027 Calmodulin and related 81.5 5.8 0.00013 29.2 5.9 70 42-113 41-111 (151)
20 cd05022 S-100A13 S-100A13: S-1 81.1 1.8 3.8E-05 30.4 2.9 57 46-109 9-69 (89)
21 cd05023 S-100A11 S-100A11: S-1 80.2 5 0.00011 27.9 4.9 58 45-109 9-74 (89)
22 PF12763 EF-hand_4: Cytoskelet 78.0 4.8 0.0001 29.2 4.4 55 45-109 10-65 (104)
23 cd05029 S-100A6 S-100A6: S-100 77.2 2.4 5.1E-05 29.5 2.5 58 48-109 13-73 (88)
24 KOG0041 Predicted Ca2+-binding 76.7 2.9 6.2E-05 35.1 3.2 61 45-108 99-173 (244)
25 cd05030 calgranulins Calgranul 73.5 4.2 9.1E-05 27.9 3.0 62 47-110 10-74 (88)
26 cd00213 S-100 S-100: S-100 dom 71.4 6.5 0.00014 26.2 3.5 66 45-112 8-76 (88)
27 PF09279 EF-hand_like: Phospho 69.6 5.3 0.00011 26.5 2.7 28 48-76 3-31 (83)
28 PF13499 EF-hand_7: EF-hand do 68.4 5.6 0.00012 24.8 2.5 29 43-71 38-66 (66)
29 PLN02964 phosphatidylserine de 64.8 14 0.0003 34.9 5.2 63 47-116 181-244 (644)
30 PF12860 PAS_7: PAS fold 64.6 9.1 0.0002 26.1 3.2 55 35-89 10-68 (115)
31 KOG0034 Ca2+/calmodulin-depend 61.6 33 0.00071 27.4 6.2 70 45-116 104-176 (187)
32 PF08423 Rad51: Rad51; InterP 60.5 7.8 0.00017 31.6 2.5 31 25-55 65-97 (256)
33 cd00252 SPARC_EC SPARC_EC; ext 60.1 23 0.00049 26.1 4.7 57 45-113 48-106 (116)
34 KOG4223 Reticulocalbin, calume 57.5 14 0.0003 32.4 3.7 58 48-114 244-304 (325)
35 PF15192 TMEM213: TMEM213 fami 57.0 11 0.00023 27.0 2.4 19 77-95 41-59 (82)
36 COG5126 FRQ1 Ca2+-binding prot 56.8 26 0.00056 27.6 4.8 62 44-112 91-153 (160)
37 KOG0027 Calmodulin and related 55.3 20 0.00043 26.4 3.7 35 42-76 82-116 (151)
38 cd05027 S-100B S-100B: S-100B 53.3 19 0.00042 24.9 3.2 28 46-73 9-38 (88)
39 cd05031 S-100A10_like S-100A10 51.9 20 0.00044 24.3 3.2 73 44-118 7-83 (94)
40 PF10384 Scm3: Centromere prot 50.6 10 0.00023 25.2 1.5 12 45-56 16-27 (58)
41 KOG0044 Ca2+ sensor (EF-Hand s 49.0 35 0.00075 27.5 4.5 77 43-121 98-183 (193)
42 cd05030 calgranulins Calgranul 47.6 41 0.00088 22.9 4.1 31 44-74 50-80 (88)
43 COG5126 FRQ1 Ca2+-binding prot 46.1 58 0.0013 25.6 5.2 58 50-114 61-119 (160)
44 cd05029 S-100A6 S-100A6: S-100 44.5 49 0.0011 22.8 4.2 33 39-73 26-59 (88)
45 cd05023 S-100A11 S-100A11: S-1 44.4 41 0.00088 23.3 3.8 31 43-73 50-80 (89)
46 KOG0031 Myosin regulatory ligh 44.0 18 0.0004 29.1 2.2 28 87-114 31-59 (171)
47 PF10574 UPF0552: Uncharacteri 43.6 17 0.00038 30.3 2.0 53 13-72 56-121 (224)
48 smart00027 EH Eps15 homology d 42.6 52 0.0011 22.3 4.1 28 39-72 24-51 (96)
49 cd05025 S-100A1 S-100A1: S-100 42.3 54 0.0012 22.1 4.1 30 44-73 51-80 (92)
50 cd05026 S-100Z S-100Z: S-100Z 41.3 53 0.0011 22.6 3.9 31 43-73 51-81 (93)
51 PRK12309 transaldolase/EF-hand 40.2 56 0.0012 28.9 4.8 51 43-113 332-383 (391)
52 PF05517 p25-alpha: p25-alpha 40.0 27 0.00059 26.6 2.5 86 31-125 29-121 (154)
53 PHA02559 59 59 protein; Provis 37.6 21 0.00046 29.7 1.7 59 50-117 58-125 (216)
54 cd05031 S-100A10_like S-100A10 37.5 70 0.0015 21.7 4.0 34 40-73 25-59 (94)
55 cd05022 S-100A13 S-100A13: S-1 35.2 63 0.0014 22.5 3.6 30 39-72 23-54 (89)
56 KOG0044 Ca2+ sensor (EF-Hand s 33.3 25 0.00054 28.3 1.4 35 43-77 145-179 (193)
57 PF12347 HJURP_C: Holliday jun 32.7 15 0.00032 24.7 0.0 35 23-57 2-41 (64)
58 cd00213 S-100 S-100: S-100 dom 32.5 99 0.0021 20.3 4.1 35 39-73 24-59 (88)
59 KOG4251 Calcium binding protei 32.3 55 0.0012 28.6 3.4 45 30-74 84-130 (362)
60 smart00708 PhBP Insect pheromo 31.9 72 0.0016 20.9 3.3 36 32-73 42-77 (103)
61 PLN02964 phosphatidylserine de 31.3 70 0.0015 30.3 4.2 33 42-74 212-244 (644)
62 PF01395 PBP_GOBP: PBP/GOBP fa 30.8 41 0.00088 22.5 2.0 34 33-73 61-94 (121)
63 cd05027 S-100B S-100B: S-100B 28.9 1.1E+02 0.0024 21.0 3.9 25 47-71 53-77 (88)
64 PF14395 COOH-NH2_lig: Phage p 26.9 20 0.00043 30.6 -0.2 18 1-18 153-170 (261)
65 PF07467 BLIP: Beta-lactamase 26.6 46 0.001 27.1 1.9 29 38-74 27-55 (183)
66 cd05024 S-100A10 S-100A10: A s 26.3 1.3E+02 0.0027 21.6 3.9 31 43-73 46-76 (91)
67 PF01458 UPF0051: Uncharacteri 25.5 25 0.00054 27.8 0.2 45 14-72 182-226 (229)
68 KOG2768 Translation initiation 25.5 43 0.00092 28.2 1.5 38 19-56 123-179 (231)
69 PF08671 SinI: Anti-repressor 24.4 55 0.0012 19.2 1.5 22 89-112 4-25 (30)
70 PF00690 Cation_ATPase_N: Cati 23.2 1.2E+02 0.0026 19.4 3.1 27 47-73 6-32 (69)
71 PLN02230 phosphoinositide phos 23.0 95 0.0021 29.2 3.5 34 43-77 27-61 (598)
72 PF14788 EF-hand_10: EF hand; 22.7 93 0.002 20.3 2.4 27 46-72 22-48 (51)
73 cd04469 S1_Hex1 S1_Hex1: Hex1, 22.6 62 0.0013 22.6 1.7 23 106-129 25-48 (75)
74 PHA00452 T3/T7-like RNA polyme 22.0 22 0.00048 34.4 -0.9 63 17-94 425-487 (807)
75 PF06703 SPC25: Microsomal sig 20.9 61 0.0013 24.4 1.5 21 34-54 138-158 (162)
76 PF08707 PriCT_2: Primase C te 20.9 1.5E+02 0.0033 19.7 3.3 27 41-69 50-76 (78)
77 PF14220 DUF4329: Domain of un 20.2 79 0.0017 23.7 1.9 28 10-39 51-78 (123)
No 1
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=100.00 E-value=8e-73 Score=443.96 Aligned_cols=123 Identities=59% Similarity=0.932 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCCCCccceeeccccccCCCCCCcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCc
Q 032842 1 MGLSSKTRPGKFPSLLFPIEIKNIHKSKHGSDSGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDY 80 (132)
Q Consensus 1 ~~lSy~T~~~w~pdp~f~Iyv~nIHk~kHGSDSg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~ 80 (132)
++|||+|+|+|+|||+|||||+||||+|||||||+||+||||||+|||+||+|||+++||+||++||++|++||||++||
T Consensus 52 ~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~ 131 (174)
T PF05042_consen 52 GALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDP 131 (174)
T ss_pred cccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhHHHHHHhhhcCCCccchhhhhhcccCchhHHHHH
Q 032842 81 GGWVAAYSEWKILYVLCKDKNGLLRKDTVRAVYDGSLFEHMEK 123 (132)
Q Consensus 81 ~GW~aa~~EW~~~y~L~~d~dG~l~Ke~vR~vYDGSlF~~i~~ 123 (132)
+||+|+.+||.++|+|+||+||+|+||+||+|||||||++|||
T Consensus 132 ~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYDGSlF~~iak 174 (174)
T PF05042_consen 132 FGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYDGSLFYKIAK 174 (174)
T ss_pred chhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcchHHHHHhhC
Confidence 9999999999999999999999999999999999999999985
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.17 E-value=0.07 Score=33.67 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=44.5
Q ss_pred hHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhcc
Q 032842 46 KFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAVY 113 (132)
Q Consensus 46 kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~vY 113 (132)
|..++|.+|+..+.+.||..|+..+++.......+-- ..-+...++..+ .|.||.|+-++...+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEE---SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHH---HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHH---HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4678999999999999999999999998765444110 111222222222 6778999988876543
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.56 E-value=0.27 Score=28.43 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV 112 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v 112 (132)
...+|..|+....+.|+..|+..+++......+ .-++..++..+ .+++|.|+-++...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLS-------EEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 568999999998899999999999987653322 22333444444 457888888776543
No 4
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.29 E-value=0.049 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=24.1
Q ss_pred hHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 032842 46 KFEEIFTKHACTQPNALTSDELMGMLK 72 (132)
Q Consensus 46 kFE~iFsKya~~~~d~LT~~E~~~m~~ 72 (132)
++.++|..|++++.+.||..|+..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478999999999999999999999987
No 5
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=93.49 E-value=0.083 Score=30.20 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=24.5
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
.+++|++|++.+.+.+++.|+.+|++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999999863
No 6
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=93.46 E-value=0.067 Score=33.51 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHhhhcC--CCCCCCCHHHHHHHHHhc
Q 032842 47 FEEIFTKHAC--TQPNALTSDELMGMLKAN 74 (132)
Q Consensus 47 FE~iFsKya~--~~~d~LT~~E~~~m~~~n 74 (132)
.=++|.|||. +.++.|+-.|+.+|+..+
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 3479999994 457899999999999875
No 7
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.96 E-value=0.3 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
+..+|+.++....+.+++.|+..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999888889999999998875
No 8
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.37 E-value=0.57 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.5
Q ss_pred HHHHhhhcCCCCCCCCHHHHHHHHHhc
Q 032842 48 EEIFTKHACTQPNALTSDELMGMLKAN 74 (132)
Q Consensus 48 E~iFsKya~~~~d~LT~~E~~~m~~~n 74 (132)
=++|.||| +.++.|+-.|+.+|++.+
T Consensus 11 I~~FhkYa-G~~~tLsk~Elk~Ll~~E 36 (91)
T cd05024 11 MLTFHKFA-GEKNYLNRDDLQKLMEKE 36 (91)
T ss_pred HHHHHHHc-CCCCcCCHHHHHHHHHHH
Confidence 36899999 567899999999999765
No 9
>PTZ00184 calmodulin; Provisional
Probab=88.36 E-value=2.6 Score=29.33 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=41.5
Q ss_pred hhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhcc
Q 032842 44 PSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAVY 113 (132)
Q Consensus 44 p~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~vY 113 (132)
.+..+.||..++....+.+++.|+..++...-...+ ..-.+...|... .+.+|.|++++++.+.
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~------~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD------SEEEIKEAFKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc------HHHHHHHHHHhhCCCCCCeEeHHHHHHHH
Confidence 456677788887777777888888887775422211 112344555555 4567999999998665
No 10
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=88.01 E-value=1.6 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=40.6
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhh
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVR 110 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR 110 (132)
+++.++|..+++.+.+.||..|+.++++... .... |....+.++ .+.+|.|..++.-
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-------~~~~--ev~~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG-------LPQT--LLAKIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC-------CCHH--HHHHHHHHhcCCCCCCcCHHHHH
Confidence 5789999999999889999999999998732 2223 233333333 3567888877654
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.76 E-value=2.7 Score=25.80 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhh
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTV 109 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~v 109 (132)
|.++|..++..+.+.+|..|+..+++..- - +.-++...+..+ .+.+|.++-++.
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g-------~--~~~~~~~i~~~~d~~~~g~i~~~ef 55 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSG-------L--PRSVLAQIWDLADTDKDGKLDKEEF 55 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcC-------C--CHHHHHHHHHHhcCCCCCcCCHHHH
Confidence 46789999988888999999999987642 1 233444444444 356788876654
No 12
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=84.46 E-value=1 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=21.5
Q ss_pred HHHHhhhcCCCCCCCCHHHHHHHH
Q 032842 48 EEIFTKHACTQPNALTSDELMGML 71 (132)
Q Consensus 48 E~iFsKya~~~~d~LT~~E~~~m~ 71 (132)
+++|.+.+..+.+.||..|+.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 678999999998899999999875
No 13
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=83.99 E-value=1.6 Score=26.60 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=29.0
Q ss_pred cChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 42 FVPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 42 Fvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
+.++.++.||+.++..+.+.+++.|+..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 77888999999999999999999999998864
No 14
>PTZ00183 centrin; Provisional
Probab=83.56 E-value=5.5 Score=28.17 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV 112 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v 112 (132)
.+.+|..++....+.+++.|+..++.......++ .-++..+|.++ .+.+|.|+.++++.+
T Consensus 55 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~~~l~~~F~~~D~~~~G~i~~~e~~~~ 115 (158)
T PTZ00183 55 IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP------REEILKAFRLFDDDKTGKISLKNLKRV 115 (158)
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc------HHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 3444444444444445555555444432211111 12344445554 355677777766644
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.94 E-value=2.5 Score=28.79 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred ChhhHHHHHhhhc-CCCCC-CCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhh
Q 032842 43 VPSKFEEIFTKHA-CTQPN-ALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTV 109 (132)
Q Consensus 43 vp~kFE~iFsKya-~~~~d-~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~v 109 (132)
..+...++|..|+ +...+ .||..|+..+++.+-. +++|...+.-++..+...+ .|.+|.|+-++.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg--~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF 74 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELS--DFLDAQKDADAVDKIMKELDENGDGEVDFQEF 74 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHH--HHccCCCCHHHHHHHHHHHCCCCCCcCcHHHH
Confidence 3567889999997 87767 4999999999975321 2233223444555555444 355778876554
No 16
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=82.74 E-value=3.6 Score=28.52 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=37.4
Q ss_pred hHHHHHhhhcC-CCCC-CCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhh
Q 032842 46 KFEEIFTKHAC-TQPN-ALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRA 111 (132)
Q Consensus 46 kFE~iFsKya~-~~~d-~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~ 111 (132)
.+-++|.+|+. ...+ .||..||..+++.+-. +.++.-...-||..+..-+ .+.||.++=++...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~--~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~ 77 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELT--DFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVV 77 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhH--HhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 34567999994 4433 3999999999977421 0111111223454444333 56678887666543
No 17
>PTZ00184 calmodulin; Provisional
Probab=82.68 E-value=7.1 Score=27.06 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.3
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV 112 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v 112 (132)
+++.++|..++..+.+.||..|+..++.-...... .-+...++.++ .+.+|.|..++..++
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~ 72 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-------EAELQDMINEVDADGNGTIDFPEFLTL 72 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-------HHHHHHHHHhcCcCCCCcCcHHHHHHH
Confidence 56889999999988889999999998865332111 12334444444 567888888776654
No 18
>PTZ00183 centrin; Provisional
Probab=82.43 E-value=6.3 Score=27.88 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=45.2
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHH-HhhhcCCCccchhhhhhcccC
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILY-VLCKDKNGLLRKDTVRAVYDG 115 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y-~L~~d~dG~l~Ke~vR~vYDG 115 (132)
+..+++|..++....+.|+..|+..++...-...+ .-|...++ .+-.+++|.|+.++...+..+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT-------DEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 46788999999998889999999999875322222 22222222 344578999999998877654
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=81.48 E-value=5.8 Score=29.18 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=52.4
Q ss_pred cChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhcc
Q 032842 42 FVPSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAVY 113 (132)
Q Consensus 42 Fvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~vY 113 (132)
..++...+|++..+....+.+.+.|+..|+..+-...+..- ...-|-.-+|-+. .|.+|+++.++++.|.
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~--~~~~el~eaF~~fD~d~~G~Is~~el~~~l 111 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE--ASSEELKEAFRVFDKDGDGFISASELKKVL 111 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--ccHHHHHHHHHHHccCCCCcCcHHHHHHHH
Confidence 45677888899988887788999999999887765544432 3444666677666 5667999999998764
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=81.13 E-value=1.8 Score=30.44 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred hHHHHHhhhcC-CCCCCCCHHHHHHHHHhcC--CCCCcchhhHHHhhHHHHH-HhhhcCCCccchhhh
Q 032842 46 KFEEIFTKHAC-TQPNALTSDELMGMLKANR--EPKDYGGWVAAYSEWKILY-VLCKDKNGLLRKDTV 109 (132)
Q Consensus 46 kFE~iFsKya~-~~~d~LT~~E~~~m~~~nR--~~~D~~GW~aa~~EW~~~y-~L~~d~dG~l~Ke~v 109 (132)
..-++|.+|++ +.++.|+..|+..|++.+- ..-|. -|...+. .+=.|.||.|+=++.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~-------~~v~~mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV-------EGLEEKMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH-------HHHHHHHHHhCCCCCCCCcHHHH
Confidence 35679999999 8889999999999998742 11121 2333333 233578899987664
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=80.22 E-value=5 Score=27.92 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=37.1
Q ss_pred hhHHHHHhhhcCCCCC--CCCHHHHHHHHHhc-----CCCCCcchhhHHHhhHHHHHH-hhhcCCCccchhhh
Q 032842 45 SKFEEIFTKHACTQPN--ALTSDELMGMLKAN-----REPKDYGGWVAAYSEWKILYV-LCKDKNGLLRKDTV 109 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d--~LT~~E~~~m~~~n-----R~~~D~~GW~aa~~EW~~~y~-L~~d~dG~l~Ke~v 109 (132)
.+.-.+|.+|+....+ .||..|+..++..+ ....++.. |.-+.. +=.|.||.++=++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~-------~~~ll~~~D~d~DG~I~f~EF 74 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGV-------LDRMMKKLDLNSDGQLDFQEF 74 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHH-------HHHHHHHcCCCCCCcCcHHHH
Confidence 4556899998855333 79999999999987 33344433 333222 23467788875443
No 22
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=77.97 E-value=4.8 Score=29.17 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=42.6
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhh
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTV 109 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~v 109 (132)
++|+.||...+. ..+.||..++..++..-..+.+ .-...|.|+ .|.||.|++++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~---------~L~~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRD---------VLAQIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHH---------HHHHHHHHH-SSSSSEEEHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHH---------HHHHHHhhhcCCCCCcCCHHHH
Confidence 689999998875 4578999999999887776543 344677777 567899998763
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=77.17 E-value=2.4 Score=29.45 Aligned_cols=58 Identities=21% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHhhhcCC-C-CCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHH-HhhhcCCCccchhhh
Q 032842 48 EEIFTKHACT-Q-PNALTSDELMGMLKANREPKDYGGWVAAYSEWKILY-VLCKDKNGLLRKDTV 109 (132)
Q Consensus 48 E~iFsKya~~-~-~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y-~L~~d~dG~l~Ke~v 109 (132)
=+||.||+.. . .+.||..|+.++++..+...+.. ... |..... .+=.|.+|.++=++.
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~--ev~~m~~~~D~d~dG~Idf~EF 73 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDA--EIAKLMEDLDRNKDQEVNFQEY 73 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHH--HHHHHHHHhcCCCCCCCcHHHH
Confidence 3699999973 3 56999999999996432222221 112 222233 233467788875543
No 24
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=76.66 E-value=2.9 Score=35.10 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=42.2
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCC--------------CCcchhhHHHhhHHHHHHhhhcCCCccchhh
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREP--------------KDYGGWVAAYSEWKILYVLCKDKNGLLRKDT 108 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~--------------~D~~GW~aa~~EW~~~y~L~~d~dG~l~Ke~ 108 (132)
+-++.||.+|+.++.+.+.+.||..|+..=-.| -|.-|=+ ++-|..+.|-.+. .|-|+++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgkl-SfreflLIfrkaa--agEL~~ds 173 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKL-SFREFLLIFRKAA--AGELQEDS 173 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccch-hHHHHHHHHHHHh--ccccccch
Confidence 457899999999998999999999999763332 2333322 4556666666663 36665543
No 25
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=73.53 E-value=4.2 Score=27.89 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHhhhcCC--CCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhh
Q 032842 47 FEEIFTKHACT--QPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVR 110 (132)
Q Consensus 47 FE~iFsKya~~--~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR 110 (132)
--.+|.|||.. .++.||..||..++..+-. ++.-=..+.-||..++..+ .+.+|.++-++.-
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g--~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELP--NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhh--HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 34689999966 3679999999999974211 1100001245566655555 3467889877653
No 26
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=71.43 E-value=6.5 Score=26.19 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=39.5
Q ss_pred hhHHHHHhhhcC--CCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc
Q 032842 45 SKFEEIFTKHAC--TQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV 112 (132)
Q Consensus 45 ~kFE~iFsKya~--~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v 112 (132)
+.+.++|..|++ ...+.||..|+..+++.+....-..+.. .-|...++..+ .+.+|.|+-++...+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~--~~ei~~i~~~~d~~~~g~I~f~eF~~~ 76 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKD--PEAVDKIMKDLDVNKDGKVDFQEFLVL 76 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCC--HHHHHHHHHHhccCCCCcCcHHHHHHH
Confidence 356777999999 6788999999999997532100001111 22333333222 356788887776544
No 27
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=69.63 E-value=5.3 Score=26.54 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.4
Q ss_pred HHHHhhhcCCCCCCCCHHHHHHHHH-hcCC
Q 032842 48 EEIFTKHACTQPNALTSDELMGMLK-ANRE 76 (132)
Q Consensus 48 E~iFsKya~~~~d~LT~~E~~~m~~-~nR~ 76 (132)
++||.+|+. ....||..++.+-|+ -|+.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 689999988 568999999999995 5766
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=68.44 E-value=5.6 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=23.0
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHH
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGML 71 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~ 71 (132)
+.+..+.||..++....+.||+.|+.+|+
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 34566777999999888899999988764
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=64.80 E-value=14 Score=34.92 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhcccCc
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAVYDGS 116 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~vYDGS 116 (132)
-+++|+.++....+.|++.|+..|+....+. + ..-|...++-+. +|.+|+++.++++.+.-.+
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~-~------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNL-V------AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccC-C------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 4789999998888899999999999864321 1 222444455555 5678999999999887664
No 30
>PF12860 PAS_7: PAS fold
Probab=64.62 E-value=9.1 Score=26.12 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=38.9
Q ss_pred ccCCCCccC--hhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCC--CCcchhhHHHhh
Q 032842 35 VYDSEGRFV--PSKFEEIFTKHACTQPNALTSDELMGMLKANREP--KDYGGWVAAYSE 89 (132)
Q Consensus 35 ~YD~eGRFv--p~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~--~D~~GW~aa~~E 89 (132)
+||.+||.+ -++|-+||.--....+-+.++.++.+.+..+-.. .++..|+...++
T Consensus 10 v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 68 (115)
T PF12860_consen 10 VFDSDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLA 68 (115)
T ss_pred EEcCCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 499999965 6889999976554444578999999988655533 455556555443
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=61.62 E-value=33 Score=27.37 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=51.1
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh---hcCCCccchhhhhhcccCc
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC---KDKNGLLRKDTVRAVYDGS 116 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~---~d~dG~l~Ke~vR~vYDGS 116 (132)
+|-+=.|.-|+...-+.++-.|+.+|++.=....|-- .....+=.+-..+. +|+||.++.|+-+.+.-.+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM--SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 3555589999998777799999999999877766653 34444444444444 7899999999988776443
No 32
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=60.45 E-value=7.8 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=24.6
Q ss_pred cccCCCCCCcc--cCCCCccChhhHHHHHhhhc
Q 032842 25 HKSKHGSDSGV--YDSEGRFVPSKFEEIFTKHA 55 (132)
Q Consensus 25 Hk~kHGSDSg~--YD~eGRFvp~kFE~iFsKya 55 (132)
+...+|.+..| .|+||.|.++++.+|..+|.
T Consensus 65 ~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~ 97 (256)
T PF08423_consen 65 PEEIGGLGGKVVYIDTEGTFSPERLQQIAERFG 97 (256)
T ss_dssp GGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTT
T ss_pred ccccccCCCceEEEeCCCCCCHHHHHHHhhccc
Confidence 44557777777 69999999999999998874
No 33
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=60.11 E-value=23 Score=26.07 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=38.4
Q ss_pred hhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh--hcCCCccchhhhhhcc
Q 032842 45 SKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC--KDKNGLLRKDTVRAVY 113 (132)
Q Consensus 45 ~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~--~d~dG~l~Ke~vR~vY 113 (132)
.+-.-+|..++..+.+.||..||..+. .++. ...++ .++-. .++||.++.+.-+.++
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~------l~~~---e~~~~---~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR------LDPN---EHCIK---PFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH------ccch---HHHHH---HHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678999999977789999999876 2221 11111 11111 4679999999988775
No 34
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.48 E-value=14 Score=32.43 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=41.2
Q ss_pred HHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh---hcCCCccchhhhhhccc
Q 032842 48 EEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC---KDKNGLLRKDTVRAVYD 114 (132)
Q Consensus 48 E~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~---~d~dG~l~Ke~vR~vYD 114 (132)
|..|+-+++..-+.|+-.||..-+. |-+--.|..| +.++|- .|+||+|+||.|-.=||
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~-------P~~~d~A~~E--A~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWIL-------PSEQDHAKAE--ARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccC-------CCCccHHHHH--HHHHhhhhccCccccccHHHHhhCcc
Confidence 4566777777777899999973322 4444566666 555554 78999999999987655
No 35
>PF15192 TMEM213: TMEM213 family
Probab=57.02 E-value=11 Score=27.00 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=15.8
Q ss_pred CCCcchhhHHHhhHHHHHH
Q 032842 77 PKDYGGWVAAYSEWKILYV 95 (132)
Q Consensus 77 ~~D~~GW~aa~~EW~~~y~ 95 (132)
-.|=.||+|+.+-|.+.|+
T Consensus 41 gvDeyGWIAAAVGWSLwFL 59 (82)
T PF15192_consen 41 GVDEYGWIAAAVGWSLWFL 59 (82)
T ss_pred CCchhhHHHHHHhHHHHHH
Confidence 5799999999999976553
No 36
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=56.75 E-value=26 Score=27.57 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=41.6
Q ss_pred hhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc
Q 032842 44 PSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV 112 (132)
Q Consensus 44 p~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v 112 (132)
++++.+.|.-|++++.+.++..||.++++.=.+..+ --|-..+..++ .|.||.+.-++....
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~-------deev~~ll~~~d~d~dG~i~~~eF~~~ 153 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLS-------DEEVEKLLKEYDEDGDGEIDYEEFKKL 153 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCC-------HHHHHHHHHhcCCCCCceEeHHHHHHH
Confidence 788888888888888888888888888884333322 22333444444 356888877766553
No 37
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=55.29 E-value=20 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=29.4
Q ss_pred cChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCC
Q 032842 42 FVPSKFEEIFTKHACTQPNALTSDELMGMLKANRE 76 (132)
Q Consensus 42 Fvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~ 76 (132)
...+.+.++|..|++.+.+.+|..||..++..=-.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 45668899999999999889999999999986443
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=53.34 E-value=19 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=23.0
Q ss_pred hHHHHHhhhc-CCCCC-CCCHHHHHHHHHh
Q 032842 46 KFEEIFTKHA-CTQPN-ALTSDELMGMLKA 73 (132)
Q Consensus 46 kFE~iFsKya-~~~~d-~LT~~E~~~m~~~ 73 (132)
..-++|.+|+ +...+ .|+..|+..|++.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4668999998 56555 4999999999987
No 39
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=51.92 E-value=20 Score=24.35 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred hhhHHHHHhhhcC-CC-CCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHHhh-hcCCCccchhhhhhc-ccCchh
Q 032842 44 PSKFEEIFTKHAC-TQ-PNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYVLC-KDKNGLLRKDTVRAV-YDGSLF 118 (132)
Q Consensus 44 p~kFE~iFsKya~-~~-~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~L~-~d~dG~l~Ke~vR~v-YDGSlF 118 (132)
-..+-++|..|+. .+ .+.||..|+..+++.+- .+..|=-...-|+..+...+ .+.+|.++-++...+ -..|+|
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~--g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKEL--SEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHh--HHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3567789999997 64 57999999999987532 00011011122444443333 456788987765433 333444
No 40
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=50.64 E-value=10 Score=25.20 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=11.0
Q ss_pred hhHHHHHhhhcC
Q 032842 45 SKFEEIFTKHAC 56 (132)
Q Consensus 45 ~kFE~iFsKya~ 56 (132)
.+||.||+||.+
T Consensus 16 ~~~e~I~~KY~~ 27 (58)
T PF10384_consen 16 SRWESIIEKYGQ 27 (58)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcC
Confidence 579999999998
No 41
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=48.99 E-value=35 Score=27.53 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcC----CCCCcchhhHHHhhHHHHHHhh---hcCCCccchhhhhhc--c
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKANR----EPKDYGGWVAAYSEWKILYVLC---KDKNGLLRKDTVRAV--Y 113 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR----~~~D~~GW~aa~~EW~~~y~L~---~d~dG~l~Ke~vR~v--Y 113 (132)
+.+|..=.|.-|+..+.+.+|..|+.+++++.- +..+| =-....|=.+-.++. .|+||.|+-|+...- =
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~--~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP--EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC--cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 456666789999999999999999999998743 21222 011223333333333 688999997775432 2
Q ss_pred cCchhHHH
Q 032842 114 DGSLFEHM 121 (132)
Q Consensus 114 DGSlF~~i 121 (132)
|-+++..+
T Consensus 176 d~~i~~~l 183 (193)
T KOG0044|consen 176 DPSILRAL 183 (193)
T ss_pred CHHHHHHh
Confidence 44444443
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=47.59 E-value=41 Score=22.92 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=23.0
Q ss_pred hhhHHHHHhhhcCCCCCCCCHHHHHHHHHhc
Q 032842 44 PSKFEEIFTKHACTQPNALTSDELMGMLKAN 74 (132)
Q Consensus 44 p~kFE~iFsKya~~~~d~LT~~E~~~m~~~n 74 (132)
++..++||...+....+.+++.|+..|+...
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5677888888877666778888887777643
No 43
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=46.13 E-value=58 Score=25.61 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHHH-hhhcCCCccchhhhhhccc
Q 032842 50 IFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILYV-LCKDKNGLLRKDTVRAVYD 114 (132)
Q Consensus 50 iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y~-L~~d~dG~l~Ke~vR~vYD 114 (132)
||+.... ..+.+++.|+..++.-+.+-.|+- ..+.| .+- .=+|.||+++.+.+|.|-.
T Consensus 61 l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~----Eel~~--aF~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 61 LFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE----EELRE--AFKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHHhccC-CCCccCHHHHHHHHHHHhccCCcH----HHHHH--HHHHhCCCCCceecHHHHHHHHH
Confidence 3444444 335566666666665555544432 23333 222 2368899999999988754
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=44.54 E-value=49 Score=22.80 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCccChhhHHHHHhhh-cCCCCCCCCHHHHHHHHHh
Q 032842 39 EGRFVPSKFEEIFTKH-ACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 39 eGRFvp~kFE~iFsKy-a~~~~d~LT~~E~~~m~~~ 73 (132)
.|....+.|.++++++ .-+ ..+|-.|+.+|++.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg--~k~t~~ev~~m~~~ 59 (88)
T cd05029 26 KNTLSKKELKELIQKELTIG--SKLQDAEIAKLMED 59 (88)
T ss_pred CCEECHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Confidence 4577777888888763 222 34788888888764
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=44.41 E-value=41 Score=23.29 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=25.1
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
.|+..++|+...+....+.+++.|..+|+..
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4677888999888877678999999888754
No 46
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=44.01 E-value=18 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=23.0
Q ss_pred HhhHHHHHHhh-hcCCCccchhhhhhccc
Q 032842 87 YSEWKILYVLC-KDKNGLLRKDTVRAVYD 114 (132)
Q Consensus 87 ~~EW~~~y~L~-~d~dG~l~Ke~vR~vYD 114 (132)
.-|.+-.|.|+ ++.||++.|||+|..|.
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~a 59 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLA 59 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHH
Confidence 55777777776 77899999999999885
No 47
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=43.59 E-value=17 Score=30.33 Aligned_cols=53 Identities=19% Similarity=0.433 Sum_probs=41.0
Q ss_pred CCCccceee--ccccccCCCCCCcccCCCCccChhhHHH--------HHhhh---cCCCCCCCCHHHHHHHHH
Q 032842 13 PSLLFPIEI--KNIHKSKHGSDSGVYDSEGRFVPSKFEE--------IFTKH---ACTQPNALTSDELMGMLK 72 (132)
Q Consensus 13 pdp~f~Iyv--~nIHk~kHGSDSg~YD~eGRFvp~kFE~--------iFsKy---a~~~~d~LT~~E~~~m~~ 72 (132)
+.-++.||| .+||+.+ ||.+|.=+|-+|-+ +-+-| |++..|.||..+|..++.
T Consensus 56 k~Ry~vl~i~~~~~hrR~-------fd~~G~EIepnfs~T~kVntGyL~SsykveAkg~tDrls~~~L~~~V~ 121 (224)
T PF10574_consen 56 KERYYVLYIRPSRIHRRK-------FDAKGNEIEPNFSDTTKVNTGYLNSSYKVEAKGDTDRLSPEQLKALVN 121 (224)
T ss_pred ceEEEEEEEeechhhhhc-------ccCCCcCcCCCccceeeeeecccCcccEEEecCCccccCHHHHHHHhC
Confidence 334555554 6899987 99999999999976 33334 777889999999999994
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=42.63 E-value=52 Score=22.32 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=13.9
Q ss_pred CCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 032842 39 EGRFVPSKFEEIFTKHACTQPNALTSDELMGMLK 72 (132)
Q Consensus 39 eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~ 72 (132)
+|....+.+.+++.+. .++-.|+.+|++
T Consensus 24 ~G~Is~~el~~~l~~~------~~~~~ev~~i~~ 51 (96)
T smart00027 24 DGTVTGAQAKPILLKS------GLPQTLLAKIWN 51 (96)
T ss_pred CCeEeHHHHHHHHHHc------CCCHHHHHHHHH
Confidence 3555555555555441 244445555444
No 49
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=42.26 E-value=54 Score=22.06 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=17.4
Q ss_pred hhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 44 PSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 44 p~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
++.-++||+.++....+.+++.|...|+..
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 344556666665555556666666666553
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=41.30 E-value=53 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=21.8
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
.++..++|++..+....+.+++.|...|+..
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 3445777777777766667888888777754
No 51
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=40.22 E-value=56 Score=28.86 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=35.8
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHH-HhhhcCCCccchhhhhhcc
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILY-VLCKDKNGLLRKDTVRAVY 113 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y-~L~~d~dG~l~Ke~vR~vY 113 (132)
+-+..+.+|.-|+....+.+|..|+.. . ...+ .+=.|.||.+++++.+.+.
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~--~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG------------------S--DAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH------------------H--HHHHHHhCCCCCCCCcHHHHHHHH
Confidence 345567888899888888899998842 1 1223 2335789999999988754
No 52
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=40.00 E-value=27 Score=26.58 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=41.9
Q ss_pred CCCcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh---cCCCCCcchhhHHHhhHHHHHHh-h--hcC-CCc
Q 032842 31 SDSGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKA---NREPKDYGGWVAAYSEWKILYVL-C--KDK-NGL 103 (132)
Q Consensus 31 SDSg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~---nR~~~D~~GW~aa~~EW~~~y~L-~--~d~-dG~ 103 (132)
-|++++|.. +.+..-+=||+|+.....-.||+.+..+.|.. .+-.-.. .+|-. ...| . -|. .|.
T Consensus 29 kD~~i~d~k--~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~------~~~~~-~~kl~~~~~P~~~g~ 99 (154)
T PF05517_consen 29 KDCGIIDKK--LTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS------SAEEL-KEKLTAGGGPSASGA 99 (154)
T ss_dssp HHTSS--SS--S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT------HHHHH-HHHHHTT--SSSSS-
T ss_pred HHcCCCCCC--CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc------cHHHH-HHHHHccCccccccc
Confidence 478899766 99999999999975444345999888776653 2222111 22222 2222 1 222 244
Q ss_pred cchhhhhhcccCchhHHHHHhh
Q 032842 104 LRKDTVRAVYDGSLFEHMEKEH 125 (132)
Q Consensus 104 l~Ke~vR~vYDGSlF~~i~~~r 125 (132)
..-+.+|+..|-|.|-=.-++|
T Consensus 100 ~~~~~v~rltD~s~YTG~hk~r 121 (154)
T PF05517_consen 100 TKAGAVDRLTDKSTYTGSHKER 121 (154)
T ss_dssp TTS------SSSS-STTS---S
T ss_pred cccccccccCCCCccchhhhhc
Confidence 5678889999988876555544
No 53
>PHA02559 59 59 protein; Provisional
Probab=37.61 E-value=21 Score=29.67 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=42.9
Q ss_pred HHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHH---------HhhHHHHHHhhhcCCCccchhhhhhcccCch
Q 032842 50 IFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAA---------YSEWKILYVLCKDKNGLLRKDTVRAVYDGSL 117 (132)
Q Consensus 50 iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa---------~~EW~~~y~L~~d~dG~l~Ke~vR~vYDGSl 117 (132)
.|.|-|+ ..|+.|+...+-+|=.+ +|-||++. ..||...+.-.. .+=||||+.+|+=+-
T Consensus 58 fFeKLA~----Kf~l~El~~iflsNfva-np~~wigdi~~~da~~fYre~~gr~~~~s----~~F~edv~nl~~f~~ 125 (216)
T PHA02559 58 FFEKLAE----KYTLKELYDIFLSNFVA-NPDAWIGDISDADALTFYREYIGRLERFS----YKFKEDVKNLYYFSK 125 (216)
T ss_pred HHHHHHH----HccHHHHHHHHHHHHHh-CCcceeeecccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 5666664 58999999999999764 59999865 357776665543 245899999876554
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.48 E-value=70 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=17.1
Q ss_pred CccChhhHHHHHhh-hcCCCCCCCCHHHHHHHHHh
Q 032842 40 GRFVPSKFEEIFTK-HACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 40 GRFvp~kFE~iFsK-ya~~~~d~LT~~E~~~m~~~ 73 (132)
|....+.+..++.. ....-...+|-.|+.+|++.
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~ 59 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD 59 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH
Confidence 66666667766654 21100013455566666543
No 55
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=35.24 E-value=63 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=14.5
Q ss_pred CCccChhhHHHHHhh-hcCCCCCCCCH-HHHHHHHH
Q 032842 39 EGRFVPSKFEEIFTK-HACTQPNALTS-DELMGMLK 72 (132)
Q Consensus 39 eGRFvp~kFE~iFsK-ya~~~~d~LT~-~E~~~m~~ 72 (132)
.|....+.|-.+..+ .. +.||- .|+.+|++
T Consensus 23 ~g~i~~~ELk~ll~~elg----~~ls~~~~v~~mi~ 54 (89)
T cd05022 23 KESLTASEFQELLTQQLP----HLLKDVEGLEEKMK 54 (89)
T ss_pred CCeECHHHHHHHHHHHhh----hhccCHHHHHHHHH
Confidence 444555555555554 21 23444 55555553
No 56
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=33.33 E-value=25 Score=28.34 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.1
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCC
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKANREP 77 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~ 77 (132)
..+.=+.||+|-++.+.+.||+.|..+-.++..+.
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i 179 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSI 179 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHH
Confidence 44566889999999998899999999888776554
No 57
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=32.73 E-value=15 Score=24.72 Aligned_cols=35 Identities=6% Similarity=0.292 Sum_probs=0.0
Q ss_pred cccccCCCCCCcccC---CCCcc--ChhhHHHHHhhhcCC
Q 032842 23 NIHKSKHGSDSGVYD---SEGRF--VPSKFEEIFTKHACT 57 (132)
Q Consensus 23 nIHk~kHGSDSg~YD---~eGRF--vp~kFE~iFsKya~~ 57 (132)
-||+++--|+.++-+ +|.|+ +-++|+.|+.+|-..
T Consensus 2 ~~sp~~~sp~p~~~~~p~~e~kY~eI~eeFD~l~q~y~~~ 41 (64)
T PF12347_consen 2 KESPGCDSPEPDIEPSPRTENKYREINEEFDKLHQRYCLS 41 (64)
T ss_dssp ----------------------------------------
T ss_pred CcCCCCCCCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Confidence 367788778888777 66666 468999999999644
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=32.47 E-value=99 Score=20.34 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=19.1
Q ss_pred CCccChhhHHHHHhh-hcCCCCCCCCHHHHHHHHHh
Q 032842 39 EGRFVPSKFEEIFTK-HACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 39 eGRFvp~kFE~iFsK-ya~~~~d~LT~~E~~~m~~~ 73 (132)
+|....+.|..++.+ +........|-.++.+|++.
T Consensus 24 ~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~ 59 (88)
T cd00213 24 KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKD 59 (88)
T ss_pred CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH
Confidence 467777777777765 32211122456666666653
No 59
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=32.32 E-value=55 Score=28.62 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCCcccC--CCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhc
Q 032842 30 GSDSGVYD--SEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKAN 74 (132)
Q Consensus 30 GSDSg~YD--~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~n 74 (132)
|-|-|-+| +|-|-...+.-.||+|-+-.....||.+|+++-+..+
T Consensus 84 gkdLggfDedaeprrsrrklmviFsKvDVNtDrkisAkEmqrwImek 130 (362)
T KOG4251|consen 84 GKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEK 130 (362)
T ss_pred ccCCCCcccccchhHHHHHHHHHHhhcccCccccccHHHHHHHHHHH
Confidence 33444444 4567778899999999987766789999999877654
No 60
>smart00708 PhBP Insect pheromone/odorant binding protein domains.
Probab=31.87 E-value=72 Score=20.86 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=26.3
Q ss_pred CCcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 32 DSGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 32 DSg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
-.|.+|.+|.|..+++.+.|.. +.....++..++..
T Consensus 42 ~~g~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 77 (103)
T smart00708 42 KLGLVDDDGKFDAEKLLEQLKA------DDEMAEELEDIIEK 77 (103)
T ss_pred HcCCcCCCCCcCHHHHHHHHHc------ChhHHHHHHHHHHH
Confidence 3689999999999999999875 22334566666654
No 61
>PLN02964 phosphatidylserine decarboxylase
Probab=31.28 E-value=70 Score=30.32 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.3
Q ss_pred cChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhc
Q 032842 42 FVPSKFEEIFTKHACTQPNALTSDELMGMLKAN 74 (132)
Q Consensus 42 Fvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~n 74 (132)
...+..+++|..+++...+.||..|+.+++...
T Consensus 212 ~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 212 VAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 345668999999999988899999999998873
No 62
>PF01395 PBP_GOBP: PBP/GOBP family; InterPro: IPR006170 The olfactory receptors of terrestrial animals exist in an aqueous environment, yet detect odorants that are primarily hydrophobic. The aqueous solubility of hydrophobic odorants is thought to be greatly enhanced via odorant binding proteins which exist in the extracellular fluid surrounding the odorant receptors []. This family is composed of pheromone binding proteins (PBP), which are male-specific and associate with pheromone-sensitive neurons and general-odorant binding proteins (GOBP). ; GO: 0005549 odorant binding; PDB: 2KPH_A 3NHT_A 3NHI_A 3NGV_A 3K1E_B 3DZT_A 3DYE_A 3DXL_A 3DY9_A 3BJH_A ....
Probab=30.79 E-value=41 Score=22.45 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=25.8
Q ss_pred CcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 33 SGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 33 Sg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
.|.+|.+|+|.++++-+.+.++-.. .++..++..
T Consensus 61 ~g~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 94 (121)
T PF01395_consen 61 LGLMDDDGKFDVDKIREQLKKYTDD-------DEVKKIIEK 94 (121)
T ss_dssp TTSBETTSEBBHHHHHHHHHHTTHG-------HHHHHHHHH
T ss_pred hhhhhccCcccHHHHHHHHhhcccH-------HHHHHHHHh
Confidence 5889999999999998888875322 666666554
No 63
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=28.91 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=11.0
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHH
Q 032842 47 FEEIFTKHACTQPNALTSDELMGML 71 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~ 71 (132)
-++++...+....+.+++.|...|+
T Consensus 53 v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 53 VDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4444444444433444444444444
No 64
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=26.88 E-value=20 Score=30.60 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCccc
Q 032842 1 MGLSSKTRPGKFPSLLFP 18 (132)
Q Consensus 1 ~~lSy~T~~~w~pdp~f~ 18 (132)
|+|-|-|.|||+-+|-..
T Consensus 153 GGfEYRTl~SWlvsp~~~ 170 (261)
T PF14395_consen 153 GGFEYRTLPSWLVSPEIA 170 (261)
T ss_pred CCeeeecchhhhcCHHHH
Confidence 358899999999998654
No 65
>PF07467 BLIP: Beta-lactamase inhibitor (BLIP); InterPro: IPR009099 The beta-lactamase-inhibitor protein (BLIP) is produced by Streptomyces species. BLIP acts as a potent inhibitor of beta-lactamases such as TEM-1, which is the most widespread resistance enzyme to penicillin antibiotics. BLIP binds competitively to TEM-1 and makes direct contacts with TEM-1 active site residues. BLIP is able to inhibit a variety of class A beta-lactamases, possibly through flexibility of its two domains. The two tandemly repeated domains of BLIP have an alpha(2)-beta(4) structure, the beta-hairpin loop from domain 1 inserting into the active site of beta-lactamase []. BLIP shows no sequence similarity with BLIP-II, even though both bind to and inhibit TEM-1 [].; PDB: 3GMY_B 3GMX_B 3C4O_B 1XXM_C 1S0W_D 3N4I_B 3C7U_B 2G2W_B 3C7V_D 3E2K_C ....
Probab=26.62 E-value=46 Score=27.09 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhc
Q 032842 38 SEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKAN 74 (132)
Q Consensus 38 ~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~n 74 (132)
.++.+-++||+.| +.+||..|+++++-+-
T Consensus 27 a~s~lT~EkY~kI--------qfGMt~~EV~~ilGa~ 55 (183)
T PF07467_consen 27 ACSKLTAEKYEKI--------QFGMTYDEVWDILGAE 55 (183)
T ss_dssp ---SS-HHHHHHS---------TT-BHHHHHHHHTHH
T ss_pred cccccCHHHhhhH--------hcCCCHHHHHHHhCCc
Confidence 5689999999999 6799999999998653
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=26.35 E-value=1.3e+02 Score=21.62 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=25.9
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
.|+-.++||..-++.+.+.+++.|.+.|+-+
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5677888999998888788999999988754
No 67
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=25.54 E-value=25 Score=27.79 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCccceeeccccccCCCCCCcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 032842 14 SLLFPIEIKNIHKSKHGSDSGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLK 72 (132)
Q Consensus 14 dp~f~Iyv~nIHk~kHGSDSg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~ 72 (132)
-|.+-|+-+++ +|.||+..|..|.| .||=-=+| +|+..|-.+|+-
T Consensus 182 ~P~LeI~~~dV-~a~H~AtvG~idee---------~LFYL~SR----Gl~~~eA~~Liv 226 (229)
T PF01458_consen 182 IPELEIDEDDV-KASHGATVGQIDEE---------QLFYLMSR----GLSEEEARKLIV 226 (229)
T ss_dssp EEEEEE-SSSE-EEEEEEEEEES-HH---------HHHHHHCT----T--HHHHHHHHH
T ss_pred EEhHhcccCCc-EEEEeeEeecCCHH---------HHHHHHHc----CCCHHHHHHHHH
Confidence 38889999999 99999999888764 56643333 589999888874
No 68
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=43 Score=28.18 Aligned_cols=38 Identities=32% Similarity=0.574 Sum_probs=29.4
Q ss_pred eeeccccccCCCC-------------CCcccCCC------CccChhhHHHHHhhhcC
Q 032842 19 IEIKNIHKSKHGS-------------DSGVYDSE------GRFVPSKFEEIFTKHAC 56 (132)
Q Consensus 19 Iyv~nIHk~kHGS-------------DSg~YD~e------GRFvp~kFE~iFsKya~ 56 (132)
+.+..|-|.+|-| .||.-|.. |||.+..||+++-+|-.
T Consensus 123 ~Nf~Dick~mhR~pdHv~~FLlAELgTsGSidg~~rLviKGrfq~kq~e~VLRrYI~ 179 (231)
T KOG2768|consen 123 VNFADICKTMHRSPDHVMQFLLAELGTSGSIDGQQRLVIKGRFQQKQFENVLRRYIK 179 (231)
T ss_pred eeHHHHHHHhccChHHHHHHHHHHhccccccCCCceEEEeccccHHHHHHHHHHHHH
Confidence 4555666777755 47888875 79999999999999964
No 69
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.35 E-value=55 Score=19.16 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=14.9
Q ss_pred hHHHHHHhhhcCCCccchhhhhhc
Q 032842 89 EWKILYVLCKDKNGLLRKDTVRAV 112 (132)
Q Consensus 89 EW~~~y~L~~d~dG~l~Ke~vR~v 112 (132)
||..+=.-|+ +-| |+||+||.-
T Consensus 4 EW~~Li~eA~-~~G-ls~eeir~F 25 (30)
T PF08671_consen 4 EWVELIKEAK-ESG-LSKEEIREF 25 (30)
T ss_dssp HHHHHHHHHH-HTT---HHHHHHH
T ss_pred HHHHHHHHHH-HcC-CCHHHHHHH
Confidence 7888877775 345 789999864
No 70
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.17 E-value=1.2e+02 Score=19.39 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHHHhhhcCCCCCCCCHHHHHHHHHh
Q 032842 47 FEEIFTKHACTQPNALTSDELMGMLKA 73 (132)
Q Consensus 47 FE~iFsKya~~~~d~LT~~E~~~m~~~ 73 (132)
-|+++.++..+.+++||..|+.+.++.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~ 32 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKK 32 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHh
Confidence 478899998777899999999888865
No 71
>PLN02230 phosphoinositide phospholipase C 4
Probab=22.99 E-value=95 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=28.1
Q ss_pred ChhhHHHHHhhhcCCCCCCCCHHHHHHHHHh-cCCC
Q 032842 43 VPSKFEEIFTKHACTQPNALTSDELMGMLKA-NREP 77 (132)
Q Consensus 43 vp~kFE~iFsKya~~~~d~LT~~E~~~m~~~-nR~~ 77 (132)
-|.--++||.+|+... +.||..++.+.|.. ||..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~ 61 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGE 61 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCc
Confidence 4678899999998775 79999999998865 6554
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=22.68 E-value=93 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=21.5
Q ss_pred hHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 032842 46 KFEEIFTKHACTQPNALTSDELMGMLK 72 (132)
Q Consensus 46 kFE~iFsKya~~~~d~LT~~E~~~m~~ 72 (132)
--..+|.+.++.+.+.|-..|+.+..+
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 345799999999989999999988764
No 73
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=22.62 E-value=62 Score=22.57 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.0
Q ss_pred hhhhhhcc-cCchhHHHHHhhhhhh
Q 032842 106 KDTVRAVY-DGSLFEHMEKEHESAK 129 (132)
Q Consensus 106 Ke~vR~vY-DGSlF~~i~~~r~~~~ 129 (132)
|||++ +- ||-|..+|+++-...+
T Consensus 25 kdDl~-lP~~~~l~~~I~~~f~~gk 48 (75)
T cd04469 25 KQGLP-VIDQSNLWTRLKTAFESGR 48 (75)
T ss_pred ccCcc-CCCcchHHHHHHHHHHCCC
Confidence 89999 88 9999999988765443
No 74
>PHA00452 T3/T7-like RNA polymerase
Probab=22.04 E-value=22 Score=34.36 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=48.2
Q ss_pred cceeeccccccCCCCCCcccCCCCccChhhHHHHHhhhcCCCCCCCCHHHHHHHHHhcCCCCCcchhhHHHhhHHHHH
Q 032842 17 FPIEIKNIHKSKHGSDSGVYDSEGRFVPSKFEEIFTKHACTQPNALTSDELMGMLKANREPKDYGGWVAAYSEWKILY 94 (132)
Q Consensus 17 f~Iyv~nIHk~kHGSDSg~YD~eGRFvp~kFE~iFsKya~~~~d~LT~~E~~~m~~~nR~~~D~~GW~aa~~EW~~~y 94 (132)
|-||+.|.+ |-|--.||.--.|+.++.|+|++- |. |.|+.. .| ..+-||+--+|+.+||.-..
T Consensus 425 Lkih~AN~~----G~dK~s~~eR~~wv~~n~~~I~~~-A~---dPl~~~-ww------~~Ad~P~qfLA~c~El~~a~ 487 (807)
T PHA00452 425 LKVHGANCY----GVDKVTFDERAAWVDENHDNILAA-AE---DPLNNT-WW------AEADSPLCFLAACFEYAAAV 487 (807)
T ss_pred HHHHHHHHh----CCCcCCHHHHHHHHHHHHHHHHHH-Hh---CcCCch-hh------hcCCCHHHHHHHHHHHHHHH
Confidence 667777776 778888988889999999999974 22 345544 22 46899999999999998543
No 75
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.92 E-value=61 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.4
Q ss_pred cccCCCCccChhhHHHHHhhh
Q 032842 34 GVYDSEGRFVPSKFEEIFTKH 54 (132)
Q Consensus 34 g~YD~eGRFvp~kFE~iFsKy 54 (132)
..+|.+|.|+++.|++.+.+.
T Consensus 138 ~~Fde~G~l~~~~~~~~l~~l 158 (162)
T PF06703_consen 138 KFFDEDGYLVEDLFENWLEKL 158 (162)
T ss_pred hEECCCCEEeHHHHHHHHHHH
Confidence 469999999999999988763
No 76
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=20.91 E-value=1.5e+02 Score=19.69 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=11.5
Q ss_pred ccChhhHHHHHhhhcCCCCCCCCHHHHHH
Q 032842 41 RFVPSKFEEIFTKHACTQPNALTSDELMG 69 (132)
Q Consensus 41 RFvp~kFE~iFsKya~~~~d~LT~~E~~~ 69 (132)
.|.++.++..+... .+++.+|++-|..
T Consensus 50 ky~~~e~~~~W~s~--~~~~~it~~Tl~~ 76 (78)
T PF08707_consen 50 KYDEEECERKWRSF--DRPGGITIGTLFY 76 (78)
T ss_pred CCCHHHHHHHHHhC--CCCCCccHHHHHH
Confidence 34444444444444 1223455444443
No 77
>PF14220 DUF4329: Domain of unknown function (DUF4329)
Probab=20.16 E-value=79 Score=23.71 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCCCCCccceeeccccccCCCCCCcccCCC
Q 032842 10 GKFPSLLFPIEIKNIHKSKHGSDSGVYDSE 39 (132)
Q Consensus 10 ~w~pdp~f~Iyv~nIHk~kHGSDSg~YD~e 39 (132)
.|.|.|.--=-|.-+| .||+++..||.|
T Consensus 51 ~~~~~p~g~~~vA~yH--THG~~~~~y~~e 78 (123)
T PF14220_consen 51 SNPPCPNGSTIVASYH--THGAYSDGYDNE 78 (123)
T ss_pred CCcccccccceeeEee--cccccCCCcccc
Confidence 4555555555566667 599888887765
Done!