BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032843
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U5C|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 119
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 48/64 (75%)
Query: 18 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSC 77
VK +RC NC K PKDKAIKR +RNIVE AAVRD+ EA VY Y LPK Y K+ YCVSC
Sbjct: 18 VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77
Query: 78 AIHS 81
AIH+
Sbjct: 78 AIHA 81
>pdb|3ZEY|V Chain V, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 111
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 18 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCV 75
V+ + C NC + PKDK++ RF+VR +++QA+ RDV EA + G+ +PKLY K +YC+
Sbjct: 20 VRPVHCFNCSRLVPKDKSVGRFVVRRMLDQASARDVAEASLIYGSGFPMPKLYMKQRYCI 79
Query: 76 SCAIHS 81
+CAIHS
Sbjct: 80 ACAIHS 85
>pdb|2XZM|5 Chain 5, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|5 Chain 5, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 119
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 18 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDG--YTLPKLYAKMQYCV 75
+ + C+NCG+ KDKA+KR+ VR++V+ ++ RD+Q+ ++ +PKLY K+QYC+
Sbjct: 18 TRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCI 77
Query: 76 SCAIHSH 82
SCAIHS
Sbjct: 78 SCAIHSR 84
>pdb|3AWI|A Chain A, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|B Chain B, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|C Chain C, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|D Chain D, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|E Chain E, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|F Chain F, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
Length = 688
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 41 VRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH 80
V +I + ++++ YDGY P+ A +C+ + H
Sbjct: 503 VSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYH 542
>pdb|3PS9|A Chain A, Crystal Structure Of Mnmc From E. Coli
Length = 676
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 41 VRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH 80
V +I + ++++ YDGY P+ A +C+ + H
Sbjct: 491 VSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYH 530
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 26.2 bits (56), Expect = 6.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 27 GKCCPKDKAIKRFLVRNIVEQAAVRDVQEAC 57
G C P D A + ++ I+ + A +V EAC
Sbjct: 305 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEAC 335
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 45 VEQAAVRDVQEACVYDGYTLPK 66
+++ R +QE C+ +GY LPK
Sbjct: 359 IQERLSRYIQEFCLANGYLLPK 380
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 45 VEQAAVRDVQEACVYDGYTLPK 66
+++ R +QE C+ +GY LPK
Sbjct: 359 IQERLSRYIQEFCLANGYLLPK 380
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 45 VEQAAVRDVQEACVYDGYTLPK 66
+++ R +QE C+ +GY LPK
Sbjct: 359 IQERLSRYIQEFCLANGYLLPK 380
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 45 VEQAAVRDVQEACVYDGYTLPK 66
+++ R +QE C+ +GY LPK
Sbjct: 359 IQERLSRYIQEFCLANGYLLPK 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,088,134
Number of Sequences: 62578
Number of extensions: 55385
Number of successful extensions: 167
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 10
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)