Query 032843
Match_columns 132
No_of_seqs 109 out of 193
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 51.6 2.1 0.00015 23.4 0.7 12 17-28 3-14 (29)
2 d1zr9a1 g.37.1.4 (A:28-94) Zin 45.0 2.1 0.00015 27.0 -0.1 15 70-84 14-28 (67)
3 d1ef4a_ a.4.11.1 (A:) RNA poly 41.0 2.8 0.0002 25.7 0.1 12 20-31 3-14 (55)
4 d1twfj_ a.4.11.1 (J:) RNA poly 40.1 3.4 0.00024 26.1 0.4 12 19-30 3-14 (65)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 34.0 3.1 0.00023 27.0 -0.6 22 27-48 17-38 (87)
6 d1cc1l_ e.18.1.1 (L:) Nickel-i 29.5 3.4 0.00025 32.4 -1.2 9 72-80 479-487 (487)
7 d1e3db_ e.18.1.1 (B:) Nickel-i 28.6 3.7 0.00027 32.7 -1.2 9 72-80 529-537 (537)
8 d1yq9h1 e.18.1.1 (H:7-536) Nic 27.5 3.9 0.00028 32.1 -1.2 10 71-80 521-530 (530)
9 d1kvva_ d.201.1.1 (A:) SRP19 { 26.8 4.8 0.00035 26.7 -0.6 22 27-48 20-41 (104)
10 d1frfl_ e.18.1.1 (L:) Nickel-i 26.6 4.2 0.0003 32.6 -1.2 9 72-80 535-543 (543)
11 d1wuil1 e.18.1.1 (L:19-552) Ni 25.9 4.4 0.00032 32.3 -1.2 9 72-80 526-534 (534)
12 d1x63a2 g.39.1.3 (A:45-76) Fou 25.4 6.2 0.00045 21.7 -0.2 9 71-79 20-28 (32)
13 d2dkta2 g.93.1.1 (A:82-137) RI 24.9 18 0.0013 22.0 1.9 17 17-33 31-47 (56)
14 d2hyma2 b.1.2.1 (A:110-212) In 22.3 9.6 0.0007 25.8 0.2 19 61-79 58-76 (103)
15 d1twfl_ g.41.9.2 (L:) RBP12 su 21.9 9.6 0.0007 22.5 0.1 14 18-31 19-32 (46)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=51.60 E-value=2.1 Score=23.45 Aligned_cols=12 Identities=67% Similarity=1.234 Sum_probs=9.6
Q ss_pred ccceEeecCCcc
Q 032843 17 HVKFIRCSNCGK 28 (132)
Q Consensus 17 hv~~V~C~NCgr 28 (132)
+-++|.|-|||.
T Consensus 3 qr~~ikCfNCGk 14 (29)
T d1nc8a_ 3 QRKVIRCWNCGK 14 (29)
T ss_dssp CCCCCBCTTTSC
T ss_pred CcceeEeecCCc
Confidence 346899999997
No 2
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.98 E-value=2.1 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=11.8
Q ss_pred eeEEeeeeceecccc
Q 032843 70 KMQYCVSCAIHSHVV 84 (132)
Q Consensus 70 Kl~YCVSCAIHskVV 84 (132)
-.+|||.|+-|..--
T Consensus 14 gqfYCv~C~K~F~se 28 (67)
T d1zr9a1 14 GLHRCLACARYFIDS 28 (67)
T ss_dssp GCSEETTTTEECSSH
T ss_pred CEEecccccCccCCH
Confidence 468999999987643
No 3
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=40.98 E-value=2.8 Score=25.74 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.3
Q ss_pred eEeecCCcceee
Q 032843 20 FIRCSNCGKCCP 31 (132)
Q Consensus 20 ~V~C~NCgr~vP 31 (132)
||||..||..+-
T Consensus 3 PVRCFTCGkvia 14 (55)
T d1ef4a_ 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CcCcCCCchhHH
Confidence 899999999663
No 4
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.12 E-value=3.4 Score=26.06 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=10.2
Q ss_pred ceEeecCCccee
Q 032843 19 KFIRCSNCGKCC 30 (132)
Q Consensus 19 ~~V~C~NCgr~v 30 (132)
-||||-.||..+
T Consensus 3 IPVRCFTCgkvi 14 (65)
T d1twfj_ 3 VPVRCFSCGKVV 14 (65)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCcccCCCCcCh
Confidence 389999999965
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=33.99 E-value=3.1 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.4
Q ss_pred cceeecccceeeeeecccchhh
Q 032843 27 GKCCPKDKAIKRFLVRNIVEQA 48 (132)
Q Consensus 27 gr~vPKDKAIKrf~irNiVEaa 48 (132)
||.||++.|+...++..|.|+.
T Consensus 17 GRRv~k~~aV~~P~~~eI~~a~ 38 (87)
T d1lnga_ 17 GRKVPEELAIEKPSLKDIEKAL 38 (87)
T ss_dssp TCCSCTTTCBSSCCHHHHHHHH
T ss_pred cCccCHHHHccCCCHHHHHHHH
Confidence 6999999999877777666543
No 6
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=29.52 E-value=3.4 Score=32.43 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.7
Q ss_pred EEeeeecee
Q 032843 72 QYCVSCAIH 80 (132)
Q Consensus 72 ~YCVSCAIH 80 (132)
-=|+|||.|
T Consensus 479 DPCisCa~H 487 (487)
T d1cc1l_ 479 DPCLGCAVH 487 (487)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999998
No 7
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=28.57 E-value=3.7 Score=32.68 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=7.2
Q ss_pred EEeeeecee
Q 032843 72 QYCVSCAIH 80 (132)
Q Consensus 72 ~YCVSCAIH 80 (132)
-=|+|||.|
T Consensus 529 DPC~sCa~H 537 (537)
T d1e3db_ 529 DPCIACSTH 537 (537)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999988
No 8
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=27.51 E-value=3.9 Score=32.14 Aligned_cols=10 Identities=30% Similarity=1.145 Sum_probs=7.5
Q ss_pred eEEeeeecee
Q 032843 71 MQYCVSCAIH 80 (132)
Q Consensus 71 l~YCVSCAIH 80 (132)
--=|+|||+|
T Consensus 521 ~DPC~sCa~H 530 (530)
T d1yq9h1 521 YDPCIACGVH 530 (530)
T ss_dssp TCCBHHHHHC
T ss_pred cCCccccccc
Confidence 3458899888
No 9
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.80 E-value=4.8 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.2
Q ss_pred cceeecccceeeeeecccchhh
Q 032843 27 GKCCPKDKAIKRFLVRNIVEQA 48 (132)
Q Consensus 27 gr~vPKDKAIKrf~irNiVEaa 48 (132)
||.||++.||...++.-|.+++
T Consensus 20 GRRv~k~~aV~~P~~~eI~~a~ 41 (104)
T d1kvva_ 20 GRRIPRRFAVPNVKLHELVEAS 41 (104)
T ss_dssp CCCSCTTTCCSSCCHHHHHHHH
T ss_pred cCccCHHHhcCCCCHHHHHHHH
Confidence 6999999999888877776654
No 10
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=26.55 E-value=4.2 Score=32.59 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.5
Q ss_pred EEeeeecee
Q 032843 72 QYCVSCAIH 80 (132)
Q Consensus 72 ~YCVSCAIH 80 (132)
-=|+|||.|
T Consensus 535 DPC~sCa~H 543 (543)
T d1frfl_ 535 DPCIACGVH 543 (543)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 459999998
No 11
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=25.87 E-value=4.4 Score=32.26 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.5
Q ss_pred EEeeeecee
Q 032843 72 QYCVSCAIH 80 (132)
Q Consensus 72 ~YCVSCAIH 80 (132)
-=|+||++|
T Consensus 526 DPCisCa~H 534 (534)
T d1wuil1 526 DPCIACGVH 534 (534)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 459999988
No 12
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.45 E-value=6.2 Score=21.74 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.7
Q ss_pred eEEeeeece
Q 032843 71 MQYCVSCAI 79 (132)
Q Consensus 71 l~YCVSCAI 79 (132)
-.|||+|--
T Consensus 20 d~ycvtche 28 (32)
T d1x63a2 20 DFYCVTCHE 28 (32)
T ss_dssp EEEEHHHHH
T ss_pred cEEEEEeec
Confidence 578999843
No 13
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.88 E-value=18 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.788 Sum_probs=14.5
Q ss_pred ccceEeecCCcceeecc
Q 032843 17 HVKFIRCSNCGKCCPKD 33 (132)
Q Consensus 17 hv~~V~C~NCgr~vPKD 33 (132)
-..+.||+.|+-|+++.
T Consensus 31 ~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp GGGEEEETTTTEEEEGG
T ss_pred CccccccCccccccCcc
Confidence 35899999999999874
No 14
>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.32 E-value=9.6 Score=25.83 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=16.2
Q ss_pred ccccccceeeeEEeeeece
Q 032843 61 GYTLPKLYAKMQYCVSCAI 79 (132)
Q Consensus 61 ~y~lPKlyvKl~YCVSCAI 79 (132)
.|+|-||.=+..||||=-+
T Consensus 58 tyVidkLiPnTnYCVSvYf 76 (103)
T d2hyma2 58 TYIIDKLIPNTNYCVSVYL 76 (103)
T ss_dssp EEEEECCCSSCEEEEEEEE
T ss_pred EEEhhHhCCCCceEEEEEE
Confidence 4889999999999999654
No 15
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.88 E-value=9.6 Score=22.50 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=11.2
Q ss_pred cceEeecCCcceee
Q 032843 18 VKFIRCSNCGKCCP 31 (132)
Q Consensus 18 v~~V~C~NCgr~vP 31 (132)
..+|+|-+||-.+-
T Consensus 19 ~d~irCreCG~RIl 32 (46)
T d1twfl_ 19 TDAVRCKDCGHRIL 32 (46)
T ss_dssp TSTTCCSSSCCCCC
T ss_pred CCcEEeccCCcEEE
Confidence 36899999998654
Done!