Query 032845
Match_columns 132
No_of_seqs 113 out of 532
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 2.1E-30 7.2E-35 199.9 9.5 97 7-109 10-106 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 3.2E-29 1.1E-33 184.1 11.1 97 8-109 5-101 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 9.7E-29 3.3E-33 171.8 11.0 91 7-102 3-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 1.6E-22 5.4E-27 136.0 7.4 68 11-84 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 2.9E-21 9.8E-26 145.8 7.8 74 12-91 4-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 1.2E-19 4E-24 119.0 8.1 66 12-84 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 4.6E-19 1.6E-23 127.2 9.5 92 8-106 3-96 (111)
8 1f1e_A Histone fold protein; a 99.7 4E-17 1.4E-21 123.2 8.7 72 6-84 76-147 (154)
9 2hue_C Histone H4; mini beta s 99.7 7.2E-17 2.5E-21 110.3 7.6 78 5-89 2-80 (84)
10 4g92_C HAPE; transcription fac 99.7 1E-16 3.6E-21 116.0 7.8 75 10-90 39-113 (119)
11 1id3_B Histone H4; nucleosome 99.7 1.5E-16 5.3E-21 112.5 8.2 79 4-89 19-98 (102)
12 2byk_A Chrac-16; nucleosome sl 99.7 3.2E-17 1.1E-21 121.9 3.6 95 9-109 16-114 (140)
13 1n1j_B NF-YC; histone-like PAI 99.6 5.8E-16 2E-20 108.2 7.8 75 11-91 18-92 (97)
14 1ku5_A HPHA, archaeal histon; 99.6 1.7E-15 5.8E-20 99.9 7.9 64 12-82 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 3E-15 1E-19 105.7 8.5 78 5-89 21-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 3.6E-15 1.2E-19 105.4 7.4 78 5-89 21-99 (103)
17 1jfi_A Transcription regulator 99.3 1.3E-12 4.4E-17 91.5 5.5 76 10-91 9-84 (98)
18 2hue_B Histone H3; mini beta s 99.3 7.2E-12 2.5E-16 84.7 8.8 74 10-85 1-74 (77)
19 3nqj_A Histone H3-like centrom 99.2 1.5E-11 5E-16 84.1 6.8 75 11-85 2-76 (82)
20 2yfv_A Histone H3-like centrom 99.2 1E-10 3.4E-15 82.6 8.1 74 9-82 24-98 (100)
21 3r45_A Histone H3-like centrom 99.1 1.3E-10 4.5E-15 87.6 8.2 78 8-85 73-150 (156)
22 3nqu_A Histone H3-like centrom 99.1 1.3E-10 4.4E-15 86.4 6.1 79 8-86 57-135 (140)
23 1tzy_C Histone H3; histone-fol 99.0 3.9E-10 1.3E-14 83.4 6.9 75 9-85 59-133 (136)
24 3vh5_A CENP-S; histone fold, c 99.0 6.6E-10 2.3E-14 82.5 7.9 98 17-120 24-121 (140)
25 4dra_A Centromere protein S; D 99.0 2.2E-09 7.5E-14 77.2 8.4 77 17-103 32-108 (113)
26 2ly8_A Budding yeast chaperone 99.0 2.1E-09 7.2E-14 78.1 7.9 78 12-89 1-117 (121)
27 1taf_B TFIID TBP associated fa 98.9 4.5E-09 1.6E-13 69.7 8.4 65 11-82 5-69 (70)
28 3b0b_B CENP-S, centromere prot 98.8 6.8E-09 2.3E-13 74.0 7.0 64 17-84 24-87 (107)
29 3v9r_A MHF1, uncharacterized p 98.8 1.1E-08 3.7E-13 70.9 7.6 64 17-84 17-80 (90)
30 1taf_A TFIID TBP associated fa 98.6 1.6E-07 5.5E-12 61.9 8.1 61 16-83 5-65 (68)
31 2nqb_C Histone H2A; nucleosome 98.6 2.4E-07 8.2E-12 67.2 7.9 68 10-83 21-88 (123)
32 2f8n_G Core histone macro-H2A. 98.5 2.9E-07 1E-11 66.5 7.9 68 10-83 20-87 (120)
33 1tzy_A Histone H2A-IV; histone 98.5 3.2E-07 1.1E-11 67.1 7.9 68 10-83 23-90 (129)
34 1id3_C Histone H2A.1; nucleoso 98.5 3E-07 1E-11 67.4 7.3 69 9-83 22-90 (131)
35 1f66_C Histone H2A.Z; nucleoso 98.5 5.3E-07 1.8E-11 65.8 7.8 69 10-83 25-93 (128)
36 2f8n_K Histone H2A type 1; nuc 98.5 5.7E-07 1.9E-11 67.3 7.8 68 10-83 42-109 (149)
37 2nqb_D Histone H2B; nucleosome 98.4 1.1E-06 3.6E-11 64.0 7.4 67 16-88 37-103 (123)
38 2l5a_A Histone H3-like centrom 98.4 5.9E-07 2E-11 71.6 6.5 76 10-85 9-85 (235)
39 1tzy_B Histone H2B; histone-fo 98.3 1.4E-06 4.6E-11 63.7 7.4 67 16-88 40-106 (126)
40 2l5a_A Histone H3-like centrom 98.3 4.3E-07 1.5E-11 72.3 5.0 53 33-85 175-227 (235)
41 2jss_A Chimera of histone H2B. 98.2 3.1E-06 1.1E-10 65.1 7.3 69 10-83 103-171 (192)
42 2jss_A Chimera of histone H2B. 98.1 1.3E-05 4.4E-10 61.7 8.0 64 16-85 7-70 (192)
43 4dra_E Centromere protein X; D 98.1 2.6E-05 8.8E-10 53.3 8.6 70 10-83 10-79 (84)
44 3b0b_C CENP-X, centromere prot 98.0 3.3E-05 1.1E-09 52.3 8.3 71 9-83 5-75 (81)
45 1h3o_B Transcription initiatio 98.0 5.5E-05 1.9E-09 50.7 8.5 66 12-83 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.7 0.00027 9.2E-09 48.5 8.3 67 12-85 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 97.0 0.0014 4.6E-08 45.1 5.7 51 12-66 1-51 (88)
48 3uk6_A RUVB-like 2; hexameric 92.8 0.39 1.3E-05 37.7 7.5 67 13-83 259-329 (368)
49 3ksy_A SOS-1, SON of sevenless 91.2 0.8 2.7E-05 42.5 8.7 67 10-83 102-168 (1049)
50 2c9o_A RUVB-like 1; hexameric 87.9 1.3 4.4E-05 36.7 6.8 51 34-84 383-437 (456)
51 2v1u_A Cell division control p 85.4 2.7 9.2E-05 32.4 7.1 69 15-85 203-277 (387)
52 1k6k_A ATP-dependent CLP prote 82.9 3.4 0.00012 28.3 6.1 33 37-81 2-34 (143)
53 3kw6_A 26S protease regulatory 81.4 2 6.9E-05 27.0 4.1 32 53-84 42-73 (78)
54 1fnn_A CDC6P, cell division co 80.3 16 0.00055 28.1 9.7 76 13-90 193-280 (389)
55 3fes_A ATP-dependent CLP endop 80.1 7.4 0.00025 27.0 7.1 62 12-85 56-118 (145)
56 2qby_A CDC6 homolog 1, cell di 79.8 7.1 0.00024 29.9 7.5 73 13-87 197-275 (386)
57 3fh2_A Probable ATP-dependent 77.7 3.6 0.00012 28.6 4.8 37 36-84 6-42 (146)
58 1khy_A CLPB protein; alpha hel 76.7 7.8 0.00027 26.5 6.3 38 36-85 5-42 (148)
59 3fh2_A Probable ATP-dependent 76.1 16 0.00056 25.1 8.6 62 12-85 55-118 (146)
60 2dzn_B 26S protease regulatory 74.6 4.6 0.00016 25.6 4.3 28 58-85 42-69 (82)
61 3fes_A ATP-dependent CLP endop 74.2 4.2 0.00014 28.3 4.3 38 36-85 7-44 (145)
62 1g8p_A Magnesium-chelatase 38 74.0 10 0.00035 29.0 6.9 52 34-85 265-323 (350)
63 2y1q_A CLPC N-domain, negative 73.2 6.3 0.00022 27.1 5.0 38 36-85 5-42 (150)
64 3vlf_B 26S protease regulatory 71.6 5.3 0.00018 25.9 4.1 35 53-87 40-74 (88)
65 3aji_B S6C, proteasome (prosom 71.6 5.3 0.00018 25.2 4.0 33 53-85 40-72 (83)
66 3k1j_A LON protease, ATP-depen 71.6 19 0.00067 30.7 8.7 50 35-84 313-375 (604)
67 1k6k_A ATP-dependent CLP prote 70.9 15 0.0005 24.9 6.5 39 34-84 77-115 (143)
68 2y1q_A CLPC N-domain, negative 70.5 16 0.00055 24.9 6.7 60 12-83 54-114 (150)
69 3zri_A CLPB protein, CLPV; cha 70.1 18 0.00063 26.3 7.2 61 12-85 73-136 (171)
70 2krk_A 26S protease regulatory 70.0 7 0.00024 25.3 4.4 30 55-84 52-81 (86)
71 1wwi_A Hypothetical protein TT 69.3 8.9 0.00031 28.3 5.2 73 13-102 3-75 (148)
72 2qby_B CDC6 homolog 3, cell di 65.7 16 0.00055 28.2 6.4 69 13-85 197-271 (384)
73 1khy_A CLPB protein; alpha hel 64.5 23 0.0008 24.0 6.5 59 12-82 54-116 (148)
74 2f3n_A SH3 and multiple ankyri 64.3 7.1 0.00024 24.7 3.4 24 72-95 5-28 (76)
75 3zri_A CLPB protein, CLPV; cha 60.6 9.6 0.00033 27.8 4.0 38 36-85 24-61 (171)
76 3bq7_A Diacylglycerol kinase d 59.8 9.4 0.00032 24.4 3.4 25 71-95 9-33 (81)
77 2chg_A Replication factor C sm 58.9 19 0.00064 24.8 5.2 64 13-82 161-224 (226)
78 1in4_A RUVB, holliday junction 57.9 32 0.0011 26.8 6.9 55 34-88 197-254 (334)
79 1r4v_A Hypothetical protein AQ 55.9 12 0.00041 28.2 3.8 74 12-102 26-99 (171)
80 1njg_A DNA polymerase III subu 55.8 19 0.00065 24.9 4.8 64 13-81 185-248 (250)
81 3h4m_A Proteasome-activating n 55.6 15 0.0005 27.4 4.4 33 52-84 226-258 (285)
82 2kru_A Light-independent proto 55.3 11 0.00036 24.0 3.0 51 34-85 3-54 (63)
83 3bos_A Putative DNA replicatio 53.1 32 0.0011 24.2 5.7 61 16-82 177-241 (242)
84 2l09_A ASR4154 protein; proto- 50.6 11 0.00037 23.9 2.5 51 34-85 2-53 (62)
85 2r44_A Uncharacterized protein 48.7 86 0.0029 23.8 8.6 51 34-84 224-297 (331)
86 1kw4_A Polyhomeotic; SAM domai 48.1 17 0.00057 23.9 3.2 25 71-95 16-41 (89)
87 1lv7_A FTSH; alpha/beta domain 47.6 27 0.00091 25.7 4.7 33 53-85 221-253 (257)
88 3pxg_A Negative regulator of g 43.1 48 0.0017 27.3 6.0 47 36-94 5-51 (468)
89 4b4t_L 26S protease subunit RP 42.8 30 0.001 29.0 4.8 31 53-83 391-421 (437)
90 5pal_A Parvalbumin; calcium-bi 42.8 39 0.0013 21.0 4.4 42 59-100 45-89 (109)
91 4b4t_I 26S protease regulatory 41.9 32 0.0011 29.2 4.7 32 52-83 391-422 (437)
92 1bh9_A TAFII18; histone fold, 41.4 45 0.0015 19.4 4.1 28 35-62 17-44 (45)
93 1w5s_A Origin recognition comp 41.4 1.2E+02 0.0041 23.3 8.1 71 13-85 215-294 (412)
94 4b4t_M 26S protease regulatory 41.2 27 0.00091 29.3 4.2 32 53-84 391-422 (434)
95 3pxg_A Negative regulator of g 41.1 83 0.0028 25.9 7.2 62 12-85 54-116 (468)
96 4b4t_J 26S protease regulatory 40.1 35 0.0012 28.5 4.7 32 52-83 357-388 (405)
97 1tiz_A Calmodulin-related prot 39.7 48 0.0017 18.3 4.9 36 62-97 8-43 (67)
98 1uxc_A FRUR (1-57), fructose r 39.4 34 0.0012 20.9 3.5 39 8-52 7-45 (65)
99 3pm8_A PFCDPK2, calcium-depend 39.1 97 0.0033 21.6 6.6 37 60-96 62-98 (197)
100 2d87_A Smoothelin splice isofo 38.9 61 0.0021 22.5 5.2 59 58-118 68-128 (128)
101 4b4t_H 26S protease regulatory 38.8 33 0.0011 29.3 4.4 32 53-84 419-450 (467)
102 1hqc_A RUVB; extended AAA-ATPa 38.7 56 0.0019 24.5 5.4 72 12-87 167-241 (324)
103 2gle_A Neurabin-1; SAM domain, 38.5 11 0.00037 23.4 1.0 22 72-93 7-28 (74)
104 1r6b_X CLPA protein; AAA+, N-t 38.5 67 0.0023 27.8 6.4 40 34-85 77-116 (758)
105 3pfi_A Holliday junction ATP-d 37.4 78 0.0027 24.0 6.1 70 14-87 185-257 (338)
106 2d8c_A Phosphatidylcholine:cer 37.2 11 0.00039 25.3 1.0 23 71-93 19-41 (97)
107 3pxi_A Negative regulator of g 37.0 94 0.0032 27.0 7.2 62 12-85 54-116 (758)
108 1jr3_A DNA polymerase III subu 36.8 44 0.0015 25.5 4.5 68 12-84 177-244 (373)
109 3li6_A Calcium-binding protein 34.3 43 0.0015 18.6 3.3 15 67-81 48-62 (66)
110 2joj_A Centrin protein; N-term 33.8 62 0.0021 18.5 4.0 24 64-87 16-39 (77)
111 1a4p_A S100A10; S100 family, E 33.6 90 0.0031 19.7 5.6 19 86-104 68-86 (96)
112 4a4j_A Pacszia, cation-transpo 33.5 29 0.00099 19.8 2.4 18 70-87 48-65 (69)
113 1ixz_A ATP-dependent metallopr 33.5 44 0.0015 24.4 3.9 28 55-82 227-254 (254)
114 3pvs_A Replication-associated 33.4 1.6E+02 0.0054 24.2 7.7 73 12-85 164-245 (447)
115 3pxi_A Negative regulator of g 32.9 80 0.0027 27.5 6.0 47 36-94 5-51 (758)
116 2kz2_A Calmodulin, CAM; TR2C, 32.6 89 0.003 19.3 5.2 37 61-97 35-71 (94)
117 3h4s_E KCBP interacting Ca2+-b 32.5 85 0.0029 20.7 5.0 28 59-86 44-71 (135)
118 2ktg_A Calmodulin, putative; e 32.4 73 0.0025 18.7 4.3 35 62-96 21-55 (85)
119 4b4t_K 26S protease regulatory 32.2 56 0.0019 27.2 4.8 31 53-83 383-413 (428)
120 3fs7_A Parvalbumin, thymic; ca 32.2 90 0.0031 19.2 5.7 80 12-99 6-89 (109)
121 2lv7_A Calcium-binding protein 32.1 44 0.0015 21.6 3.4 51 35-97 28-78 (100)
122 1jr3_D DNA polymerase III, del 32.0 53 0.0018 25.2 4.3 68 12-83 141-208 (343)
123 1pva_A Parvalbumin; calcium bi 31.4 92 0.0032 19.1 5.3 41 59-99 46-89 (110)
124 1j7q_A CAVP, calcium vector pr 30.9 75 0.0026 18.8 4.1 26 63-88 22-47 (86)
125 2hpi_A DNA polymerase III alph 30.6 12 0.00041 35.8 0.4 45 78-129 391-436 (1220)
126 1qvr_A CLPB protein; coiled co 30.3 49 0.0017 29.4 4.3 37 36-84 5-41 (854)
127 2chq_A Replication factor C sm 30.3 98 0.0033 22.8 5.4 67 12-84 160-226 (319)
128 1s6j_A CDPK, calcium-dependent 30.1 75 0.0026 18.7 4.0 38 62-99 30-67 (87)
129 1iy2_A ATP-dependent metallopr 30.0 52 0.0018 24.5 3.9 27 56-82 252-278 (278)
130 3bs7_A Protein aveugle; sterIl 29.8 36 0.0012 21.1 2.5 23 72-94 6-30 (78)
131 2e8o_A SAM domain and HD domai 29.7 27 0.00091 23.3 1.9 22 72-93 30-53 (103)
132 1ofh_A ATP-dependent HSL prote 29.6 1E+02 0.0034 22.7 5.4 52 35-86 233-301 (310)
133 3omb_A Extracellular solute-bi 29.6 61 0.0021 26.5 4.5 63 37-101 471-534 (535)
134 2hnh_A DNA polymerase III alph 29.3 25 0.00084 32.4 2.2 46 78-129 329-374 (910)
135 1u5t_A Appears to BE functiona 29.2 75 0.0026 24.7 4.7 37 49-85 88-142 (233)
136 1bu3_A Calcium-binding protein 28.9 91 0.0031 19.2 4.4 41 59-99 46-89 (109)
137 3fwb_A Cell division control p 28.7 1.2E+02 0.0041 19.5 8.7 39 59-97 100-138 (161)
138 3iwl_A Copper transport protei 28.2 35 0.0012 19.8 2.1 17 71-87 45-61 (68)
139 1v85_A Similar to ring finger 28.1 34 0.0012 22.2 2.2 24 71-94 19-44 (91)
140 1r6b_X CLPA protein; AAA+, N-t 27.6 56 0.0019 28.3 4.1 34 37-82 2-35 (758)
141 1iqp_A RFCS; clamp loader, ext 27.5 1.3E+02 0.0044 22.2 5.7 67 12-84 168-234 (327)
142 3ezq_B Protein FADD; apoptosis 27.2 1.1E+02 0.0039 21.0 5.0 40 63-103 56-95 (122)
143 1exr_A Calmodulin; high resolu 27.1 1.3E+02 0.0044 19.4 7.0 40 59-98 87-126 (148)
144 1i4j_A 50S ribosomal protein L 27.1 61 0.0021 22.0 3.4 21 110-130 82-102 (110)
145 2opo_A Polcalcin CHE A 3; calc 27.0 1E+02 0.0034 18.1 4.4 22 64-85 20-41 (86)
146 1avs_A Troponin C; muscle cont 27.0 1E+02 0.0036 18.3 5.3 35 62-96 27-61 (90)
147 1rwy_A Parvalbumin alpha; EF-h 26.9 1.1E+02 0.0039 18.7 5.2 40 59-98 45-87 (109)
148 2lmt_A Calmodulin-related prot 26.8 1.3E+02 0.0046 19.6 5.2 42 58-99 86-127 (148)
149 3dxs_X Copper-transporting ATP 26.8 33 0.0011 19.9 1.8 18 70-87 49-66 (74)
150 1pk1_B Sex COMB on midleg CG94 26.5 43 0.0015 22.0 2.5 25 71-95 16-42 (89)
151 1whz_A Hypothetical protein; a 26.4 39 0.0013 20.6 2.2 17 71-87 4-20 (70)
152 1ixs_A Holliday junction DNA h 26.2 32 0.0011 21.2 1.7 14 75-88 18-31 (62)
153 1sxj_D Activator 1 41 kDa subu 26.2 2E+02 0.007 21.4 8.9 69 12-85 191-264 (353)
154 2ovk_C Myosin catalytic light 26.0 1.4E+02 0.0048 19.4 5.9 40 59-98 89-128 (159)
155 3b9p_A CG5977-PA, isoform A; A 25.7 2E+02 0.0069 21.1 7.2 59 36-94 208-282 (297)
156 2ns0_A Hypothetical protein; r 25.4 1.5E+02 0.0051 19.6 6.7 60 65-124 18-79 (85)
157 2i7a_A Calpain 13; calcium-dep 25.4 1.3E+02 0.0044 21.0 5.1 29 58-87 79-111 (174)
158 2pvb_A Protein (parvalbumin); 25.1 1.2E+02 0.0042 18.5 5.7 42 58-99 44-88 (108)
159 2pmy_A RAS and EF-hand domain- 25.0 1.2E+02 0.0041 18.3 4.6 27 61-87 33-59 (91)
160 1jhg_A Trp operon repressor; c 24.6 49 0.0017 22.5 2.5 31 8-47 65-95 (101)
161 3i5g_C Myosin catalytic light 24.3 1.7E+02 0.0058 19.8 6.1 38 59-96 89-126 (159)
162 2fi0_A Conserved domain protei 24.2 45 0.0015 21.2 2.2 21 67-87 56-76 (81)
163 2kn2_A Calmodulin; S MAPK phos 24.1 1.2E+02 0.0041 18.0 5.3 23 65-87 19-41 (92)
164 3k21_A PFCDPK3, calcium-depend 24.1 1.4E+02 0.0049 20.5 5.1 28 60-87 57-84 (191)
165 3bs5_B Connector enhancer of k 24.0 64 0.0022 20.0 2.9 24 72-95 7-32 (80)
166 2qz4_A Paraplegin; AAA+, SPG7, 23.8 19 0.00064 26.2 0.3 32 53-84 218-249 (262)
167 2bl0_C Myosin regulatory light 23.1 1.5E+02 0.0051 18.7 5.9 40 59-98 83-122 (142)
168 2mys_C Myosin; muscle protein, 23.0 1.5E+02 0.0051 18.7 5.1 17 70-86 23-39 (149)
169 2xmm_A SSR2857 protein, ATX1; 22.9 55 0.0019 17.6 2.2 16 72-87 47-62 (64)
170 1ich_A TNF-1, tumor necrosis f 22.8 82 0.0028 21.8 3.5 36 62-97 63-98 (112)
171 2p2u_A HOST-nuclease inhibitor 22.7 39 0.0013 24.8 1.8 20 72-91 107-126 (171)
172 3nbx_X ATPase RAVA; AAA+ ATPas 22.6 1.9E+02 0.0066 24.3 6.4 45 34-78 223-280 (500)
173 2lbf_B 60S acidic ribosomal pr 22.6 90 0.0031 19.8 3.4 28 60-87 7-34 (70)
174 2qac_A Myosin A tail domain in 22.0 1.6E+02 0.0055 18.7 5.2 31 65-95 24-55 (146)
175 1alv_A Calpain, S-camld; calci 22.0 1.8E+02 0.0062 19.3 5.4 29 59-87 81-109 (173)
176 1uhk_A Aequorin 2, aequorin; E 21.7 1.8E+02 0.0062 19.2 5.5 29 59-87 113-141 (191)
177 3vlv_A ALGQ1; sugar binding pr 21.5 2.4E+02 0.0081 22.7 6.6 68 34-103 423-492 (502)
178 1c7v_A CAVP, calcium vector pr 21.5 82 0.0028 18.3 3.0 32 65-96 18-50 (81)
179 1o7b_T Tumor necrosis factor-i 21.5 94 0.0032 20.9 3.5 30 57-87 16-45 (98)
180 3cuq_A Vacuolar-sorting protei 21.3 75 0.0026 24.7 3.3 16 70-85 113-128 (234)
181 3i5g_B Myosin regulatory light 20.8 1.9E+02 0.0064 19.5 5.1 52 34-97 7-58 (153)
182 3vfd_A Spastin; ATPase, microt 20.7 3E+02 0.01 21.4 9.1 69 15-87 284-368 (389)
183 1qv0_A Obelin, OBL; photoprote 20.7 1.7E+02 0.0057 19.6 4.8 29 59-87 117-145 (195)
184 3bs5_A Protein aveugle; sterIl 20.4 65 0.0022 21.6 2.5 24 71-94 25-50 (106)
185 3e3r_A Calcyphosin, calcyphosi 20.4 2E+02 0.007 19.4 5.3 37 62-98 44-80 (204)
186 3a09_A ALGQ1; sugar binding pr 20.3 63 0.0022 25.5 2.8 27 74-100 463-489 (490)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=2.1e-30 Score=199.88 Aligned_cols=97 Identities=26% Similarity=0.519 Sum_probs=90.7
Q ss_pred chhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCC
Q 032845 7 VPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (132)
Q Consensus 7 ~~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (132)
..+|+.||+|+|.||||++|| +++||+||+++|++|+++||+|||++|+++|.+++||||+++||++||++|||
T Consensus 10 ~~eD~~LP~A~V~RImK~alp------~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP------NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 83 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST------TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred chhhhhcCHHHHHHHHHHhCC------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcCh
Confidence 457899999999999999997 68999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhhhhhh
Q 032845 87 TEFVDPLRDSLDAKQIVSQKVVA 109 (132)
Q Consensus 87 ~~y~~~l~~~l~~~k~~~q~~~~ 109 (132)
++|+++|+.+|+.||+....++.
T Consensus 84 ~~fv~~lk~~L~~yre~~~~kkr 106 (179)
T 1jfi_B 84 GSYISEVKEVLQECKTVALKRRK 106 (179)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999987766554
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=3.2e-29 Score=184.14 Aligned_cols=97 Identities=27% Similarity=0.508 Sum_probs=86.7
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+++.||+|+|.||||+++|+ +.+||+||+.+|++|+++||+|||++|+++|.+++||||+++||++||+.+||.
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd-----~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPE-----SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ------CCSHHHHHHHHHSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccccCCHHHHHHHHHHhCcc-----cceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 368899999999999999985 789999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhhhh
Q 032845 88 EFVDPLRDSLDAKQIVSQKVVA 109 (132)
Q Consensus 88 ~y~~~l~~~l~~~k~~~q~~~~ 109 (132)
+|+++|+.+|..|++..+.++.
T Consensus 80 ~fl~~lk~~l~~yr~~~~~kk~ 101 (128)
T 2byk_B 80 SFVPSLTQDLEVYRKVVKEKKE 101 (128)
T ss_dssp TTHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999988877764
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=9.7e-29 Score=171.77 Aligned_cols=91 Identities=30% Similarity=0.472 Sum_probs=84.8
Q ss_pred chhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCC
Q 032845 7 VPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (132)
Q Consensus 7 ~~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (132)
..+++.||+|+|.||||+++|+ +.+||+||+.+|++|+++||.||+++|++.|.+++||||+++||..|++.+||
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred CcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 3468899999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHH
Q 032845 87 TEFVDPLRDSLDAKQI 102 (132)
Q Consensus 87 ~~y~~~l~~~l~~~k~ 102 (132)
.+|+++++.+|++||+
T Consensus 78 ~~~i~~~~~~l~~~r~ 93 (93)
T 1n1j_A 78 DSYVEPLKLYLQKFRE 93 (93)
T ss_dssp GGGHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHhC
Confidence 9999999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.87 E-value=1.6e-22 Score=136.04 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=64.4
Q ss_pred cccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 11 ~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
..||+|+|.||||+++| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||+.|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p------~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP------HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT------TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 47999999999999998 689999999999999999999999999999999999999999999998764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=2.9e-21 Score=145.85 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=71.2
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVD 91 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~ 91 (132)
.||+++|.||||++|| ..+||+||+++|++|+++|+.+|+++|+++|.++|||||+++||++||..|||++|.+
T Consensus 4 ~LP~a~V~Riik~~lg------~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIG------ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTST------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCC------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 6999999999999997 5899999999999999999999999999999999999999999999999999998754
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=1.2e-19 Score=119.02 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=63.5
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
.||+++|.||||+. + +.+||+||..+|++|+++|+.+|+.+|+..|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~-~------~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-G------AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT-T------CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC-C------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999998 4 689999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=4.6e-19 Score=127.18 Aligned_cols=92 Identities=12% Similarity=0.201 Sum_probs=80.8
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+|..||+++|.||||... ..+||+|+.++|++++.+|+..++.+|..+|+++|||||+++||+.||+..|+.
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g-------~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV-------KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -------CHHHHHHHHHHH-------CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHCC-------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 4788999999999999993 689999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH--HHHhhh
Q 032845 88 EFVDPLRDSLDAK--QIVSQK 106 (132)
Q Consensus 88 ~y~~~l~~~l~~~--k~~~q~ 106 (132)
.|..++..++++| ++..|.
T Consensus 76 ~~~~~l~~l~~~~lp~E~~~~ 96 (111)
T 3b0c_T 76 TDKMPLHVLVERHLPLEYRKL 96 (111)
T ss_dssp BTTBCHHHHHHHHSCHHHHHH
T ss_pred cccccHHHHHHHhCcHHHHHH
Confidence 9999999999999 665553
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.70 E-value=4e-17 Score=123.18 Aligned_cols=72 Identities=25% Similarity=0.216 Sum_probs=67.0
Q ss_pred cchhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 6 VVPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 6 ~~~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
+..+++.||+++|.||||++ + ..+||+||++.+++|+++|+.+|+++|+++|.++|||||+++||++||+..
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~-g------~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRA-G------IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-T------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHHc-C------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 34577899999999999999 3 689999999999999999999999999999999999999999999999863
No 9
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.68 E-value=7.2e-17 Score=110.30 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=72.3
Q ss_pred ccchhhc-ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 5 KVVPEAE-ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 5 k~~~Ed~-~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|++++.. .||+++|.||++... ..+||+|+.+.++++++.|+..|+.+|..+|+++|||||+++||..||+.
T Consensus 2 ~~~r~~~~~ip~~~I~Riar~~G-------v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 2 KVLRDNIQGITKPAIRRLARRGG-------VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp CCGGGGCCSSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred ccccccCCCCCHHHHHHHHHHcC-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 6677765 799999999999884 46999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 032845 84 IDFTEF 89 (132)
Q Consensus 84 lgf~~y 89 (132)
+|+.-|
T Consensus 75 ~g~~lY 80 (84)
T 2hue_C 75 QGRTLY 80 (84)
T ss_dssp TCEEEE
T ss_pred cCCCCC
Confidence 998765
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.67 E-value=1e-16 Score=115.96 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=68.4
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCccc
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y 89 (132)
...||.|.|.||||.. |+ ..+||+||..++++|++.||.+|+..|+..|..++||||+++||..|++..+.-+|
T Consensus 39 ~~~lPvaRIkrImK~d-~~-----~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 39 IHQLPLARIKKVMKAD-PE-----VKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp CCSSCHHHHHHHHHTS-TT-----CCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred cCCCCHHHHHHHHhhC-Cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 4579999999999976 53 67999999999999999999999999999999999999999999999998775556
Q ss_pred H
Q 032845 90 V 90 (132)
Q Consensus 90 ~ 90 (132)
+
T Consensus 113 L 113 (119)
T 4g92_C 113 L 113 (119)
T ss_dssp G
T ss_pred H
Confidence 4
No 11
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.67 E-value=1.5e-16 Score=112.50 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=69.5
Q ss_pred cccchhhc-ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 4 EKVVPEAE-ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 4 ek~~~Ed~-~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
.|++.+.. .||+++|.||++... ..+||.|+.+.+++++++|+..|+.+|..+|++++||||+++||..||+
T Consensus 19 ~k~~r~~i~~ip~~~I~Rlar~~G-------v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALk 91 (102)
T 1id3_B 19 RKILRDNIQGITKPAIRRLARRGG-------VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91 (102)
T ss_dssp -----CCGGGSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHcC-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 35666655 799999999999974 4699999999999999999999999999999999999999999999999
Q ss_pred HCCCccc
Q 032845 83 EIDFTEF 89 (132)
Q Consensus 83 ~lgf~~y 89 (132)
.+|+.-|
T Consensus 92 r~g~~lY 98 (102)
T 1id3_B 92 RQGRTLY 98 (102)
T ss_dssp HTTCCEE
T ss_pred HcCCCCC
Confidence 9998765
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.66 E-value=3.2e-17 Score=121.94 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=61.2
Q ss_pred hhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCHHHHHHHHHHCCCc
Q 032845 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDIC-KESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 9 Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a-~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
..+.||.|.|.||||.. |+ ..+||++|..+|++|++.||.+|+..|+..| ...+||||+++||..|+...+..
T Consensus 16 ~~~~LPlaRIKrIMK~d-pd-----v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSS-MD-----TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp -------------CCSS-SS-----CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred cCCCCCHHHHHHHHhcC-cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 45689999999999997 63 5699999999999999999999999999999 99999999999999999977655
Q ss_pred ccHH---HHHHHHHHHHHHhhhhhh
Q 032845 88 EFVD---PLRDSLDAKQIVSQKVVA 109 (132)
Q Consensus 88 ~y~~---~l~~~l~~~k~~~q~~~~ 109 (132)
+|+. +.+..+..|++..++++.
T Consensus 90 dFL~divP~ki~l~~~~~~~~~~~~ 114 (140)
T 2byk_A 90 EFLLQIVPQKIRVHQFQEMLRLNRS 114 (140)
T ss_dssp GGGTTTSCSCC--------------
T ss_pred hhHhccccchhhHHHHHHHHHhccc
Confidence 5555 778899999987776553
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.64 E-value=5.8e-16 Score=108.25 Aligned_cols=75 Identities=27% Similarity=0.410 Sum_probs=68.3
Q ss_pred cccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccH
Q 032845 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFV 90 (132)
Q Consensus 11 ~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~ 90 (132)
..||.|.|.||||.. |+ ..+||+||..++++|++.|+.+|+..|...|.+++||||+++||..|++..++.+|+
T Consensus 18 ~~lP~arIkrImK~~-~~-----~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 18 QELPLARIKKIMKLD-ED-----VKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp --CCHHHHHHHHTTS-TT-----CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CcCCHHHHHHHHccC-cc-----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 589999999999998 42 469999999999999999999999999999999999999999999999999988876
Q ss_pred H
Q 032845 91 D 91 (132)
Q Consensus 91 ~ 91 (132)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.61 E-value=1.7e-15 Score=99.85 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=61.2
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
.||+++|.||+|+. |..++|++|..+|++++..|+..|+..|+.+|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~-------g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-------GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-------TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-------CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999986 26799999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.60 E-value=3e-15 Score=105.67 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred ccchhhc-ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 5 KVVPEAE-ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 5 k~~~Ed~-~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|+..+.. .||+++|.||++... ..+||.||.+.|+++++.|+..|+.+|..+|++++||||+++||..||+.
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~G-------~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRGG-------VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchhhhcccCCHHHHHHHHHHcC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4555554 699999999999984 35999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 032845 84 IDFTEF 89 (132)
Q Consensus 84 lgf~~y 89 (132)
+|++-|
T Consensus 94 ~g~~lY 99 (103)
T 1tzy_D 94 QGRTLY 99 (103)
T ss_dssp TTCEEE
T ss_pred cCCCCc
Confidence 998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.58 E-value=3.6e-15 Score=105.39 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=63.8
Q ss_pred ccchhhc-ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 5 KVVPEAE-ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 5 k~~~Ed~-~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|++.+.. .||+++|.||++... ..+||.||.+.|+++++.|+..|+.+|..+|++++||||+++||..||+.
T Consensus 21 ~~~r~~~~gip~~~I~Rlar~~G-------~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 21 KILRDNIQGITKPAIRRLARRGG-------VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp ---------CCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhhhhhhccCCHHHHHHHHHHcC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4555544 699999999999884 35999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 032845 84 IDFTEF 89 (132)
Q Consensus 84 lgf~~y 89 (132)
+|++-|
T Consensus 94 ~g~~lY 99 (103)
T 2yfw_B 94 QGRTLY 99 (103)
T ss_dssp HC----
T ss_pred cCCCCc
Confidence 998755
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.33 E-value=1.3e-12 Score=91.47 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=58.8
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCccc
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y 89 (132)
.+.||.+.|.||||.. |+ ..+||.+|..++.++++.|+.+|+..|...|.+.+||||+++||..|++.-+..+|
T Consensus 9 ~~~fPvaRIkrimK~~-~~-----~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EE-----IGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TT-----CCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CCCCChHHHHHHHHcC-cc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 4689999999999975 32 35999999999999999999999999999999999999999999999998776666
Q ss_pred HH
Q 032845 90 VD 91 (132)
Q Consensus 90 ~~ 91 (132)
+.
T Consensus 83 L~ 84 (98)
T 1jfi_A 83 NK 84 (98)
T ss_dssp --
T ss_pred HH
Confidence 54
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.33 E-value=7.2e-12 Score=84.72 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=67.2
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++.+|++++.|++++...+.. ++.+++.+|..+||++++.|+.-|...||..|.+.||+||.+.||..|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~--~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTC--SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999977543 36899999999999999999999999999999999999999999999987655
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=84.11 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=66.2
Q ss_pred cccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 11 ~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
+.+|++++.|++|+...+..++.+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||..|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 478999999999999853222236899999999999999999999999999999999999999999999977655
No 20
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.17 E-value=1e-10 Score=82.57 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=62.3
Q ss_pred hhcccchhHHHHHHhhhccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 9 EAEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 9 Ed~~LP~a~V~RimK~~Lp~~~~d-~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
.++.||++++.|++++...+..++ .+.+++.+|..+||++++.|+.-|...||..|.+.||+||.+.||-.|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 467899999999999998755432 26899999999999999999999999999999999999999999998864
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=87.62 Aligned_cols=78 Identities=22% Similarity=0.164 Sum_probs=68.5
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
..++.||++.+.||+++...+...+.+.+++.+|..+||++++.|+.-|+..||..|.+.||+||.++||..|..--|
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 346899999999999999876543347899999999999999999999999999999999999999999999976543
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.09 E-value=1.3e-10 Score=86.39 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=67.9
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCC
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (132)
..++.||++.+.||+++...+...+.+.+++.+|..+||++++.|+.-|+..||..|.+.||+||.+.||..|..--|.
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 3468999999999999997432222368999999999999999999999999999999999999999999999876664
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.04 E-value=3.9e-10 Score=83.44 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=67.4
Q ss_pred hhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 9 Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.++.||++++.||+++...+.. ++.+++.+|..+||++++.|+.-|...||..|.+.||+||.+.||..|..--|
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~--~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHC--TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhhhhccchHHHHHHHHHHHhh--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 4678999999999999965332 36899999999999999999999999999999999999999999999987654
No 24
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.03 E-value=6.6e-10 Score=82.51 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=65.2
Q ss_pred HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 17 ~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
+|.||+++.... .++.+|.++..+|.+.+..|+..|+..+...|+|+|||||+++||..+++.. ++....|+++
T Consensus 24 ~VgkIvee~~~~----~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn--~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAED----KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS--NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC--HHHHHHHHHH
Confidence 688999888642 3689999999999999999999999999999999999999999999999985 2333334444
Q ss_pred HHHHHHHhhhhhhcCCCcccCCCC
Q 032845 97 LDAKQIVSQKVVASNPLFFFRGNH 120 (132)
Q Consensus 97 l~~~k~~~q~~~~~~~~~~~~g~~ 120 (132)
.++-....+..++.+......|+.
T Consensus 98 ~~el~~~~~~~~~~~k~k~~~~~~ 121 (140)
T 3vh5_A 98 SDELASSNMEQKEKKKKKSSAAKG 121 (140)
T ss_dssp HHHHHHC-----------------
T ss_pred HHHHHhhhHHHhhhhhcccccccc
Confidence 444333334444444444444433
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.97 E-value=2.2e-09 Score=77.23 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=67.3
Q ss_pred HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 17 ~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
+|.||+++...+ .++.+|+++..+|.+.+..|+.-|+..+...|+++|||||+++||..+++.. +.|..+
T Consensus 32 ~V~rIvke~gae----r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~ 101 (113)
T 4dra_A 32 TVGCLCEEVALD----KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHH
T ss_pred HHHHHHHHHHHH----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHH
Confidence 689999998752 3578999999999999999999999999999999999999999999999985 566666
Q ss_pred HHHHHHH
Q 032845 97 LDAKQIV 103 (132)
Q Consensus 97 l~~~k~~ 103 (132)
|..|.+.
T Consensus 102 l~~~~~e 108 (113)
T 4dra_A 102 ITDKSEE 108 (113)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666644
No 26
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.1e-09 Score=78.12 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=55.1
Q ss_pred ccchhHHHHHHhhhccCCCC-CCcchhhHHHHHHHHHHHHHH--------------------------------------
Q 032845 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIF-------------------------------------- 52 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~-d~~~~ISkDA~~al~~~a~~F-------------------------------------- 52 (132)
.+|+.+..|++++...+..+ +.+.+++.+|..+||++++.|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 36888888888876544322 113455555555555555555
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCccc
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y 89 (132)
+.-|...|..++++.+||||+++||.-||+..|-.-|
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4445568888889999999999999999999986533
No 27
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.94 E-value=4.5e-09 Score=69.74 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=61.1
Q ss_pred cccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 11 ~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
..||.++|.+++++.. --++|.|+...|.+-++..+..|+.+|...+.+.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G-------i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG-------VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT-------CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4799999999999983 4599999999999999999999999999999999999999999999986
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.85 E-value=6.8e-09 Score=73.96 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 17 ~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
+|.||+++.... .+.++|+++..+|.+.+..|+.-|+..|...|+++|||||+++||..|++..
T Consensus 24 ~V~rI~~~~g~~----~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAED----KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 589999988631 2479999999999999999999999999999999999999999999999985
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.1e-08 Score=70.92 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=59.1
Q ss_pred HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 17 ~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
+|.+|+.+.++. .++.+|.++..+|.+.+..|+..++..+...|+|+|||||+++||..++++.
T Consensus 17 ~V~ki~~e~~~~----~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSS----EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCS----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHh----cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 688999999863 3589999999999999999999999999999999999999999999998874
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.64 E-value=1.6e-07 Score=61.88 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=56.2
Q ss_pred hHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 16 a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
..|.||+|+.. .-+++.++...|.+.+..+..-|..+|..+|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G-------~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN-------VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT-------CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 46889999873 45999999999999999999999999999999999999999999999875
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.56 E-value=2.4e-07 Score=67.21 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=62.8
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+.||.+.|.|+||+.-. .-+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 21 gL~fPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY------AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 478999999999999732 45999999999999999999999999999999999999999999999874
No 32
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.54 E-value=2.9e-07 Score=66.52 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=62.7
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
-+.||.+.|.|+||+.-. .-+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 20 gLqfPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP------KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS------SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 468999999999999842 45999999999999999999999999999999999999999999999874
No 33
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.53 E-value=3.2e-07 Score=67.09 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=62.8
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+.||.+.|.|+||+.-. .-+||.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY------AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS------SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 478999999999999732 45999999999999999999999999999999999999999999999874
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.51 E-value=3e-07 Score=67.41 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=63.2
Q ss_pred hhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 9 Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
-.+.||.+.|.|+||+.-. .-+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 22 agLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY------AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS------CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3578999999999999732 45999999999999999999999999999999999999999999999874
No 35
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.47 E-value=5.3e-07 Score=65.85 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=62.7
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+.||.+.|.|+||+.-. ...+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 25 gLqfPV~ri~R~Lk~~~~-----a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC-----SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc-----chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 478999999999999842 124999999999999999999999999999999999999999999999875
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.45 E-value=5.7e-07 Score=67.33 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
-+.||.+.|.|+||+.-. .-+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 42 gLqFPVgrI~R~LK~~~~------a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY------SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc------ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 468999999999999732 45999999999999999999999999999999999999999999999874
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.38 E-value=1.1e-06 Score=64.00 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=60.9
Q ss_pred hHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcc
Q 032845 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTE 88 (132)
Q Consensus 16 a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~ 88 (132)
..|+|++|++-| +..||.+|...|......+..-|+.+|...+..++|+||++.||..|++-+==++
T Consensus 37 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 37 IYIYTVLKQVHP------DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 468999999987 5789999999999999999999999999999999999999999999987664443
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.9e-07 Score=71.57 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=67.4
Q ss_pred hcccchhHHHHHHhhhccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d-~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+.+|+.+..|++++...+..+. .+.+++.+|..+||++++.|+.-|...+|-.|.+.+|.||.+.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 46899999999999998765431 26899999999999999999999999999999999999999999999987766
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.35 E-value=1.4e-06 Score=63.67 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=61.0
Q ss_pred hHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcc
Q 032845 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTE 88 (132)
Q Consensus 16 a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~ 88 (132)
..|+|++|++-| +..||.+|...|......+..-|+.+|...+..++|+||++.||..|++-+==++
T Consensus 40 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 40 IYVYKVLKQVHP------DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 469999999987 5789999999999999999999999999999999999999999999988764443
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.3e-07 Score=72.34 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=50.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 33 TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 33 ~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
|.-+||.++.+.+......|+.-|...|..+|++++||||+++||.-||+.+|
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 35699999999999999999999999999999999999999999999999876
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.22 E-value=3.1e-06 Score=65.13 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+.||.+.|.|+||+.-. ...+|+.+|...|..+.+-+...|...|...|.+.||++|+|+||..|++.
T Consensus 103 gl~fPv~ri~R~lk~~~~-----a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHAT-----GRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTC-----SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCc-----cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 578999999999999731 135999999999999999999999999999999999999999999999874
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.07 E-value=1.3e-05 Score=61.70 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=59.2
Q ss_pred hHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 16 a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.-|.|++|+.-| +..||.+|...|......+..-|+.+|...+...+|+||++.||..|++-+=
T Consensus 7 ~yi~kvLkqv~p------~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~l 70 (192)
T 2jss_A 7 SYIYKVLKQTHP------DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 70 (192)
T ss_dssp HHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHcccCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 468999999987 5789999999999999999999999999999999999999999999988543
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.07 E-value=2.6e-05 Score=53.26 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=62.2
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
+..+|..+|.||++....+ .+++||+||..++++....|+..-...|...++.++-.+|..+|+-+.+-.
T Consensus 10 ~~~i~~~li~ril~~~F~~----~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKD----DKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4589999999999988853 479999999999999999999999999999999888999999999876543
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.01 E-value=3.3e-05 Score=52.30 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=62.4
Q ss_pred hhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 9 Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
++-.+|..+|.||++....+ ...+|++||..++++....|+..-...|...++.++-..|..+|+-+.+-.
T Consensus 5 ~~~~~~~~lI~ril~~~f~~----~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRD----GRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhcc----CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 35689999999999999863 478999999999999999999999999999999999999999999876543
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.96 E-value=5.5e-05 Score=50.71 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
-|++..+..++++.-| +..+..|+.++|.+.|.+||.-+++.|-..|++-+-.|+...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp------~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP------NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999965 68999999999999999999999999999999999999999999988875
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.67 E-value=0.00027 Score=48.49 Aligned_cols=67 Identities=16% Similarity=0.426 Sum_probs=60.4
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESK-RQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~k-RKTI~~eDVl~AL~~lg 85 (132)
.||++.|.|+|...+ +..+|.+...+|.=.+.+|+-.|..+|.++....+ ...|.|.||-.|.+.|.
T Consensus 16 ~f~k~~vKrl~~~~~-------~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-------GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-------CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 799999999999998 45799999999999999999999999999998765 55899999999988764
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0014 Score=45.06 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKE 66 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~ 66 (132)
.+|+.+|.||++.... +.+++||+||..++++....|+..-...|.+..+.
T Consensus 1 ~ip~~llaRIL~~~F~----~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 1 MLSKEALIKILSQNEG----GNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCCSHHHHHHHTTTSC----SSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC----CCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999998775 35799999999999999999998887777666544
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.80 E-value=0.39 Score=37.66 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=50.3
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~----~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
++...+..+++..+.. .+..++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4456666666655542 246799999999988776 245556667777888889999999999999987
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.16 E-value=0.8 Score=42.46 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=51.4
Q ss_pred hcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 10 d~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+.+|.+.|.|++|... .-||+..|...+.-..+-....|..-|-..|...+++.|++.|+..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~-------~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVL-------GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHH-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhccc-------ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 46799999999996665 35999999888776554444445555666677788999999999999865
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.89 E-value=1.3 Score=36.65 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=40.4
Q ss_pred cchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 34 DISVHKDALLAFCESA-R---IFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a-~---~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
++.++.++...+.+.+ . -....+...|..+|..+++.+|+.+||..|+.-+
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 3568889888888776 1 2455666778888988999999999999998764
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.43 E-value=2.7 Score=32.40 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=49.0
Q ss_pred hhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 15 ~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~------~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
...+..+++..+... -.+..++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|++.+.
T Consensus 203 ~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEA--FNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 555666666544210 0135688889888888776 35556667777888888899999999999998763
No 52
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=82.93 E-value=3.4 Score=28.25 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 032845 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (132)
Q Consensus 37 ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL 81 (132)
+|..+..+|+. |.+.|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56666666664 6678888899999999999998
No 53
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=81.41 E-value=2 Score=26.97 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
|..|..+|...|...++..|+.+|+..||+..
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 56677788888888899999999999999863
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.29 E-value=16 Score=28.08 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=51.5
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESA------------RIFIHYLSATANDICKESKRQTINAEDVLKA 80 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a------------~~FI~~ltseA~~~a~~~kRKTI~~eDVl~A 80 (132)
++...+..+++..+...- ....++.++...+.+.+ --++..+...|...|...++.+|+.+||..|
T Consensus 193 l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~ 270 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKS 270 (389)
T ss_dssp CBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 334556666665543100 02368889988888877 2345566677778888888999999999999
Q ss_pred HHHCCCcccH
Q 032845 81 IEEIDFTEFV 90 (132)
Q Consensus 81 L~~lgf~~y~ 90 (132)
+.......+.
T Consensus 271 ~~~~~~~~~~ 280 (389)
T 1fnn_A 271 SKEVLFGISE 280 (389)
T ss_dssp HHHHSCCCCH
T ss_pred HHHHhhhhHH
Confidence 9887655433
No 55
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=80.10 E-value=7.4 Score=27.00 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=42.4
Q ss_pred ccchhHHHHHHhhhccCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCS-PDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~-~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+....+.+-+.+.+...+ .++...+|..+..+|.+ |...|...+...|+.+|++.||=.-+
T Consensus 56 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 56 GFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp TCCHHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 3444455555554443322 12356789999888876 55778888999999999999986654
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.78 E-value=7.1 Score=29.89 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=49.2
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCC
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~------~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (132)
+...-+..+++..+... .....++.++...+.+.+. -.+..+...|...+...++.+|+.+||..|++.+..
T Consensus 197 l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 197 YNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp CCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 34455666666543210 0135688888888887765 234446677888888888999999999999887754
Q ss_pred c
Q 032845 87 T 87 (132)
Q Consensus 87 ~ 87 (132)
+
T Consensus 275 ~ 275 (386)
T 2qby_A 275 D 275 (386)
T ss_dssp H
T ss_pred c
Confidence 3
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=77.67 E-value=3.6 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
++|..+..+|+. |.+.|...+...|+++|++.||=.-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 678888888876 6688999999999999999998654
No 58
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=76.66 E-value=7.8 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++|..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 577888888775 66889999999999999999985543
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=76.11 E-value=16 Score=25.12 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=43.2
Q ss_pred ccchhHHHHHHhhhccCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSP--DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~--d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+....+.+.+.+.+...+. ++...+|..+..+|.+ |...|...+...|+.+|++.||=.-+
T Consensus 55 gv~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 55 GISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp TCCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 44455555555555543321 2346789999988887 55677888999999999999986544
No 60
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=74.64 E-value=4.6 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 58 ATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 58 seA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+|...|...++..|+.+|+..|++..-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 4555667777889999999999999874
No 61
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=74.18 E-value=4.2 Score=28.34 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++|..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688899988876 55789999999999999999986544
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.02 E-value=10 Score=28.96 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=40.5
Q ss_pred cchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 34 DISVHKDALLAFCESARI-------FIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~-------FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+.++.++...|.+.+.- -+..+...|...|...++.+|+.+||..|+...-
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 468999999998877543 3445566677788888999999999999987643
No 63
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=73.18 E-value=6.3 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
+++..+..+|+. |...|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 578888888875 56888999999999999999985443
No 64
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=71.57 E-value=5.3 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
|.-|..+|...|.+.++..|+.+|+..|++..-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 44555666677777889999999999999986544
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=71.56 E-value=5.3 Score=25.17 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
|..|..+|...|...++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 334556677788888899999999999998764
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.55 E-value=19 Score=30.71 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred chhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 35 ISVHKDALLAFCESAR-------------IFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 35 ~~ISkDA~~al~~~a~-------------~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
..++.+|...|.+.+. --+.-+...|..+|...++.+|+.+||..|++.-
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 4789999999888664 2344556678889999999999999999999653
No 67
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=70.89 E-value=15 Score=24.95 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=31.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
...+|..+..+|++ |...|...+...|+.+|++.||=.-
T Consensus 77 ~~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 77 DTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp SCEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 45788888887765 5677878889999999999998653
No 68
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=70.51 E-value=16 Score=24.95 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=38.2
Q ss_pred ccchhHHHHHHhhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~-d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.+....+.+-+.+.+...+. .+...+|..+..+|.. |...|...+...|+.+|++.||=.
T Consensus 54 g~~~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 54 GLGSEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp TCCHHHHHHHHHHHHCCC-----CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCcccccCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 34444555555555543221 1235677777777765 557777778999999999999854
No 69
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=70.12 E-value=18 Score=26.28 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=42.7
Q ss_pred ccchhHHHHHHhhhccCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSP--DTDISVHKDALLAFCESARIFIHYLSATANDICK-ESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~--d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~-~~kRKTI~~eDVl~AL~~lg 85 (132)
.+....+.+-+. .+...+. ++...+|.++..+|++ |...|. .-|...|+.+|++.||=.-+
T Consensus 73 gvd~~~l~~~l~-~l~~~p~~~~~~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 73 GLEVDQVKQAIA-STYSREQVLDTYPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp TCCHHHHHHHHH-HHSCCCCCCSSCCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHH-HHhcCCCCCCCCCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 444455555555 4433221 2356799999999887 567888 88999999999999985443
No 70
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=70.05 E-value=7 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 55 YLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 55 ~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
.|..+|...|....+..|+.+|+..|++..
T Consensus 52 ~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 52 GVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345667777778888999999999999763
No 71
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=69.32 E-value=8.9 Score=28.26 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=57.5
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDP 92 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~ 92 (132)
+|-+-+.|+++.+. +.-|.|+-..-+...++.=+.-|.-.|...|+.++|-+|.+.|+ -. -..
T Consensus 3 m~~~~~e~lFR~aa-------~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL-------PI---TkG 65 (148)
T 1wwi_A 3 MKVAEFERLFRQAA-------GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL-------PI---AKG 65 (148)
T ss_dssp SCHHHHHHHHHHHH-------CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS-------CC---CHH
T ss_pred CCHHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC-------Cc---cHH
Confidence 57788999999997 46677888888888899889999999999999999999998764 22 144
Q ss_pred HHHHHHHHHH
Q 032845 93 LRDSLDAKQI 102 (132)
Q Consensus 93 l~~~l~~~k~ 102 (132)
+++.+..|++
T Consensus 66 lqesi~~F~~ 75 (148)
T 1wwi_A 66 LQETLQEFRR 75 (148)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.69 E-value=16 Score=28.19 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=44.2
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---I---FIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~---~---FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
+...-+..+++..+... -....++.++...+.+.+. - .+..+...|...|. +..+|+.+||..|++.+.
T Consensus 197 l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYG--LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHT--SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh--cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 44566666776644210 0135688888888887765 1 23344455666665 678999999999988764
No 73
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=64.53 E-value=23 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=35.9
Q ss_pred ccchhHHHHHHhhhccCCCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSP----DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~----d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
.+....+.+-+...+...+. ++...+|..+..+|.. |...+...+...|+.+|++.||=
T Consensus 54 g~~~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 54 GINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp TCCHHHHHHHHHHHHTTSCCC-------CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 33444455555544432221 1234677777776665 55667667889999999999987
No 74
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=64.29 E-value=7.1 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHCCCcccHHHHHH
Q 032845 72 INAEDVLKAIEEIDFTEFVDPLRD 95 (132)
Q Consensus 72 I~~eDVl~AL~~lgf~~y~~~l~~ 95 (132)
=+++||..-|+.+||++|.+...+
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~~ 28 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFED 28 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH
Confidence 478999999999999999876543
No 75
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=60.63 E-value=9.6 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++|..++.+|+. |.+.|...+...|.++|++.||=+-+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 466677777665 66788899999999999999986543
No 76
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=59.78 E-value=9.4 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.1
Q ss_pred ccCHHHHHHHHHHCCCcccHHHHHH
Q 032845 71 TINAEDVLKAIEEIDFTEFVDPLRD 95 (132)
Q Consensus 71 TI~~eDVl~AL~~lgf~~y~~~l~~ 95 (132)
.=+++||..-|+.+||++|.+...+
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~~ 33 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFTR 33 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4588999999999999999876643
No 77
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=58.91 E-value=19 Score=24.77 Aligned_cols=64 Identities=9% Similarity=0.153 Sum_probs=38.9
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
++..-+..+++..+.. .+..++.++...+.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455566666655431 13457888887777665444444444444444333 6999999998875
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.93 E-value=32 Score=26.82 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=38.3
Q ss_pred cchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcc
Q 032845 34 DISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTE 88 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~---~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~ 88 (132)
++.++.++...|.+.+. -.+.-+...+...|...++..|+.++|..|++.++.+.
T Consensus 197 ~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 197 DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred CCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 35677777777765432 23344445566677777788999999999999987653
No 79
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=55.94 E-value=12 Score=28.21 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=59.7
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVD 91 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~ 91 (132)
-+|-+-+.|+++.+. +.-|.|+-..-+...++.=+.-|.-.|...|+.++|-+|.+.|+ -+ -.
T Consensus 26 vmg~~kferlFR~aa-------gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL-------PI---TK 88 (171)
T 1r4v_A 26 PKGFDKLDHYFRTEL-------DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL-------NI---TK 88 (171)
T ss_dssp CTTHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS-------CC---CH
T ss_pred cCChHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC-------Cc---cH
Confidence 568899999999998 57788888888999999999999999999999999999998764 22 24
Q ss_pred HHHHHHHHHHH
Q 032845 92 PLRDSLDAKQI 102 (132)
Q Consensus 92 ~l~~~l~~~k~ 102 (132)
.+++.+..|++
T Consensus 89 GlqEsi~~Fr~ 99 (171)
T 1r4v_A 89 ALEEHIKNFQK 99 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 45555555654
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.83 E-value=19 Score=24.94 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=40.2
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL 81 (132)
++..-+..+++..+.. .+..++.++...|.+.+.--..++-......+. .++++|+.+||-.++
T Consensus 185 l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHh
Confidence 4455666666655532 145688888888877765544444444444333 345689999998876
No 81
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=55.56 E-value=15 Score=27.40 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 52 FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
-|..+...|...|...++.+|+.+|+..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 355567778888888899999999999998765
No 82
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=55.35 E-value=11 Score=23.99 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 34 DISVHKDALLAFCESARIFIHY-LSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~-ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++.++.||...|.+.= -|+-= +-...-..|...|...||.+.+..|=..+|
T Consensus 3 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 4778999998888743 34433 334444568899999999999999877655
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=53.05 E-value=32 Score=24.22 Aligned_cols=61 Identities=5% Similarity=0.019 Sum_probs=35.2
Q ss_pred hHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 16 a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~----~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
..+..+++..+.. .+..++.++...|.+.+. .....+ ..|...+..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l-~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARDLRTLFDVL-DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 4444455444421 145688888887777553 233333 33444454444 5699999998875
No 84
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=50.58 E-value=11 Score=23.86 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 34 DISVHKDALLAFCESARIFIHY-LSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~-ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
++.++.||...|.+.= -|+-= +-...-..|...|...||.+.+..|=..+|
T Consensus 2 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 53 (62)
T 2l09_A 2 NLRWTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (62)
T ss_dssp CCEECHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHHh
Confidence 3567888888887732 33332 233444668899999999999998866543
No 85
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.67 E-value=86 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.9
Q ss_pred cchhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 34 DISVHKDALLAFCESARIF-----------------------IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~F-----------------------I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
++.++.++...+.+.+... ...+...|...|.-.+|..|+++||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4667888887776654321 22344556667777899999999999988754
No 86
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=48.08 E-value=17 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.1
Q ss_pred ccCHHHHHHHHHHC-CCcccHHHHHH
Q 032845 71 TINAEDVLKAIEEI-DFTEFVDPLRD 95 (132)
Q Consensus 71 TI~~eDVl~AL~~l-gf~~y~~~l~~ 95 (132)
.=+.+||..-|+.+ ||++|.+...+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 46899999999999 99999876654
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.61 E-value=27 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
+..+...|...|...++.+|+.+|+..|++..-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344556677778888899999999999998754
No 88
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.06 E-value=48 Score=27.30 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHH
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLR 94 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~ 94 (132)
++|..+..+|.. |.+.|...+...|+++|++.||=.-+=+.....|+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~ 51 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 578888888875 55789999999999999999997765443333333
No 89
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.83 E-value=30 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|..|..+|...|.+.++..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5556677878888889999999999999875
No 90
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=42.81 E-value=39 Score=20.99 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHC---CCcccHHHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDAK 100 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~l---gf~~y~~~l~~~l~~~ 100 (132)
.+....-.++.-+|+.+++..+|..+ |..--.+.++..+..+
T Consensus 45 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 45 EVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp HHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45555666778899999999999998 6654445555544443
No 91
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.89 E-value=32 Score=29.18 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 52 FIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 52 FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
=|..|..+|...|.+.+|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 35666778888888899999999999999875
No 92
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=41.40 E-value=45 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032845 35 ISVHKDALLAFCESARIFIHYLSATAND 62 (132)
Q Consensus 35 ~~ISkDA~~al~~~a~~FI~~ltseA~~ 62 (132)
-.-..|+..+|-+....||..+..+|.+
T Consensus 17 ~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 17 QNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999998875
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.38 E-value=1.2e+02 Score=23.31 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=46.5
Q ss_pred cchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---------IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 13 LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~---------~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|+..-+..+++..+.... ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..
T Consensus 215 l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444556666644331000 013477888887777766 256677777778888888889999999888876
Q ss_pred CC
Q 032845 84 ID 85 (132)
Q Consensus 84 lg 85 (132)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 94
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.15 E-value=27 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
|..|..+|...|.+.++..|+.+|+..|++..
T Consensus 391 i~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 391 LKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 55666777788888899999999999999864
No 95
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.07 E-value=83 Score=25.86 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=43.2
Q ss_pred ccchhHHHHHHhhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~-d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+....+.+-+...++..+. .+...+|..+..+|.. |...|..-+...|+.+|++.||=.-+
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~~ 116 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhcc
Confidence 44555666666666643221 1246789999888876 55667788899999999999986544
No 96
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.09 E-value=35 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 52 FIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 52 FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35566677888888899999999999999875
No 97
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=39.66 E-value=48 Score=18.31 Aligned_cols=36 Identities=3% Similarity=-0.010 Sum_probs=23.1
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
...-.++.-+|+.+++..+|..+|..--...+...+
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 43 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334456667788888888888888654334444433
No 98
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=39.41 E-value=34 Score=20.92 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=29.3
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHH
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIF 52 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~F 52 (132)
.+...++.++|.|++...- ....||.+.+.-|.+++.++
T Consensus 7 A~~aGVS~sTVSrvLng~~------~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKA------KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCT------TTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHcCCC------CCCCCCHHHHHHHHHHHHHh
Confidence 4456789999999997541 12379999999999887665
No 99
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=39.08 E-value=97 Score=21.63 Aligned_cols=37 Identities=8% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 60 ANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
+......++--+|+.+++..+|+.+|+.--...+...
T Consensus 62 ~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l 98 (197)
T 3pm8_A 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQV 98 (197)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3344446777899999999999999875333334333
No 100
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=38.91 E-value=61 Score=22.51 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=33.4
Q ss_pred HHHHHHHHh--cCCCccCHHHHHHHHHHCCCcccHHHHHHHHHHHHHHhhhhhhcCCCcccCC
Q 032845 58 ATANDICKE--SKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDAKQIVSQKVVASNPLFFFRG 118 (132)
Q Consensus 58 seA~~~a~~--~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~~~k~~~q~~~~~~~~~~~~g 118 (132)
..|.++|++ .=.+-++++||+.. ...+--..+--+..+.+.|. .....+.+|++||..|
T Consensus 68 ~~af~~Ae~~lgip~lL~peD~v~~-~~pD~ksvmtYvs~l~~~~~-~~~~~k~~~~~~~~~~ 128 (128)
T 2d87_A 68 EVAFSSAETHADCPQLLDTEDMVRL-REPDWKCVYTYIQEFYRCLV-QKGLVKTKKSSGPSSG 128 (128)
T ss_dssp HHHHHHHHHHHCCCCCSCHHHHHHS-SSCCHHHHHHHHHHHHHHHH-HHTSCCCCCCCCCCCC
T ss_pred HHHHHHHHHcCCCCcccCHHHHhcc-CCccHHHHHHHHHHHHHHHh-hccccccCCCCCCCCC
Confidence 456777776 34788999999753 11111122222333333343 3355667888888765
No 101
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.80 E-value=33 Score=29.27 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
|.-|..+|...|.+.+|+.|+.+|+..|++..
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 55666778888888899999999999998764
No 102
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.66 E-value=56 Score=24.47 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=45.4
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~---~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+|..-+..+++..+.. .+..++.++...|.+.+. -.+..+...+...|...+..+|+.+|+..++..++.+
T Consensus 167 ~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 34555666676666542 246788898888877642 2222333334444555567789999999998877643
No 103
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=38.53 E-value=11 Score=23.43 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=18.4
Q ss_pred cCHHHHHHHHHHCCCcccHHHH
Q 032845 72 INAEDVLKAIEEIDFTEFVDPL 93 (132)
Q Consensus 72 I~~eDVl~AL~~lgf~~y~~~l 93 (132)
=|++||..-|+.+||++|.+..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4678999999999999887654
No 104
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.50 E-value=67 Score=27.82 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
...+|..++.+|+++ ...|...+...|+.+|++.||=.-+
T Consensus 77 ~~~~s~~~~~vl~~A------------~~~a~~~~~~~I~~ehlLlall~~~ 116 (758)
T 1r6b_X 77 DTQPTLSFQRVLQRA------------VFHVQSSGRNEVTGANVLVAIFSEQ 116 (758)
T ss_dssp CCEECHHHHHHHHHH------------HHHHHHHTCSSBCHHHHHHHHTTCT
T ss_pred CCCcCHHHHHHHHHH------------HHHHHHcCCCEeeHHHHHHHHhccc
Confidence 457888888888764 4566666888999999999986543
No 105
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.42 E-value=78 Score=24.00 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=46.0
Q ss_pred chhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 14 PKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI---FIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 14 P~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~---FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
+..-+..+++..+.. .+..++.++...|.+.+.- .+..+...|...|...+..+|+.+|+-.++..++++
T Consensus 185 ~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALK----LNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 345555556555432 1456888888888774322 233344455567777778899999999999987765
No 106
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=37.23 E-value=11 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.7
Q ss_pred ccCHHHHHHHHHHCCCcccHHHH
Q 032845 71 TINAEDVLKAIEEIDFTEFVDPL 93 (132)
Q Consensus 71 TI~~eDVl~AL~~lgf~~y~~~l 93 (132)
.=+++||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35889999999999999998654
No 107
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.96 E-value=94 Score=27.03 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=43.9
Q ss_pred ccchhHHHHHHhhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~-d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.+....+.+-+...++..+. .+...+|..++.+|.. |...|..-+...|+.+|++.||=.-+
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~~ 116 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcC
Confidence 44555666666666654321 1246789999888876 55667788999999999999986554
No 108
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=36.83 E-value=44 Score=25.53 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=38.2
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
.++...+..+++..+.. .++.++.++...|.+.+.--...+.......... +..+|+.+||..++...
T Consensus 177 ~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCC
Confidence 34556666666655531 1457888888877776543333333333222222 24568888887766544
No 109
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=34.26 E-value=43 Score=18.61 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=6.5
Q ss_pred cCCCccCHHHHHHHH
Q 032845 67 SKRQTINAEDVLKAI 81 (132)
Q Consensus 67 ~kRKTI~~eDVl~AL 81 (132)
++.-.|+.++....+
T Consensus 48 ~~~g~i~~~ef~~~~ 62 (66)
T 3li6_A 48 DGNGEIDQNEFAKFY 62 (66)
T ss_dssp TCSSSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 333344444444444
No 110
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=33.76 E-value=62 Score=18.52 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=16.5
Q ss_pred HHhcCCCccCHHHHHHHHHHCCCc
Q 032845 64 CKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 64 a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.-.++.-+|+.+++..+|+.+|+.
T Consensus 16 ~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 16 FDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred hCCCCCCCCcHHHHHHHHHHhCCC
Confidence 344556677777877777777764
No 111
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=33.61 E-value=90 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=8.6
Q ss_pred CcccHHHHHHHHHHHHHHh
Q 032845 86 FTEFVDPLRDSLDAKQIVS 104 (132)
Q Consensus 86 f~~y~~~l~~~l~~~k~~~ 104 (132)
|.+|+..+......+.+..
T Consensus 68 f~EF~~~~~~~~~~~~~~~ 86 (96)
T 1a4p_A 68 FQSFFSLIAGLTIACNDYF 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444333
No 112
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.52 E-value=29 Score=19.80 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=15.8
Q ss_pred CccCHHHHHHHHHHCCCc
Q 032845 70 QTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 70 KTI~~eDVl~AL~~lgf~ 87 (132)
..++.++|..+++++||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467899999999999986
No 113
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=33.49 E-value=44 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 55 YLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 55 ~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
-+..+|...|...++.+|+.+|+..|++
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 3344556667777888999999998863
No 114
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.43 E-value=1.6e+02 Score=24.22 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=46.5
Q ss_pred ccchhHHHHHHhhhccCCCCC---CcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPD---TDISVHKDALLAFCESAR----IFIHYLSATANDICKES--KRQTINAEDVLKAIE 82 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d---~~~~ISkDA~~al~~~a~----~FI~~ltseA~~~a~~~--kRKTI~~eDVl~AL~ 82 (132)
.+|...+..+++..+...... ..+.++.++...|.+.+. ..++.|- .|...+... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 456677777777766531111 247899999999988653 2333332 333444322 667899999999998
Q ss_pred HCC
Q 032845 83 EID 85 (132)
Q Consensus 83 ~lg 85 (132)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
No 115
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.88 E-value=80 Score=27.49 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHH
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLR 94 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~ 94 (132)
++|..|+.+|.. |.+.|...+...|+++|++.||=.-+=+.....|+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 578888888875 56789999999999999999997654333333333
No 116
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=32.59 E-value=89 Score=19.29 Aligned_cols=37 Identities=5% Similarity=0.073 Sum_probs=25.6
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 61 NDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 61 ~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
......++.-+|+.+++..+|..+|..-=...+...+
T Consensus 35 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 35 FRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3444567778899999999999998753334444433
No 117
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=32.54 E-value=85 Score=20.65 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCC
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDF 86 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (132)
.|....-.++.-+|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3455556677888999999999999986
No 118
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=32.41 E-value=73 Score=18.66 Aligned_cols=35 Identities=6% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
...-.++.-+|+.+++..+|+.+|+.-=...+...
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 55 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEI 55 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44445667789999999999988875333344443
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.23 E-value=56 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
|..|..+|.-.|.+.+|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 5667778888888899999999999999865
No 120
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=32.19 E-value=90 Score=19.21 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=43.5
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC---CCc
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHK-DALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI---DFT 87 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISk-DA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l---gf~ 87 (132)
.++..-|.++++..=+ +| .|+- |...++... ..- .--...+....-.++.-+|+.+++..+|..+ |..
T Consensus 6 ~~~~~ei~~~~~~~D~----~g--~i~~~eF~~~~~~~-~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~ 77 (109)
T 3fs7_A 6 ILSAKDIESALSSCQA----AD--SFNYKSFFSTVGLS-SKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARV 77 (109)
T ss_dssp TSCHHHHHHHHHHTCS----TT--CCCHHHHHHHHTCT-TCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCC
T ss_pred cCCHHHHHHHHHhcCC----CC--cCcHHHHHHHHhcC-CCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhccccc
Confidence 4667778888876521 23 3332 222222110 000 0012344555566778899999999999999 554
Q ss_pred ccHHHHHHHHHH
Q 032845 88 EFVDPLRDSLDA 99 (132)
Q Consensus 88 ~y~~~l~~~l~~ 99 (132)
--...++..+..
T Consensus 78 ~~~~~~~~~~~~ 89 (109)
T 3fs7_A 78 LTSAETKAFLAA 89 (109)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444455544443
No 121
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.15 E-value=44 Score=21.55 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 35 ~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
..++.+-..-|.+ |....-.++.-+|+.+++..+|+.+|+.-=...++..+
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4566666655543 55666778889999999999999999763333344433
No 122
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=31.97 E-value=53 Score=25.25 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=38.1
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~ 83 (132)
.++...+.+.+++.+.. .++.++.+|...|.+.+.-=+..+.++-...+.-.+.++|+.+||...+..
T Consensus 141 ~l~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp CCCTTHHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 45555666566555532 257899999988887654322222233223332223457888887665443
No 123
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=31.45 E-value=92 Score=19.12 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHC---CCcccHHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDA 99 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~l---gf~~y~~~l~~~l~~ 99 (132)
.+....-.++.-+|+.+++..+|..+ |..--...+...+..
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 45555566778899999999999999 544333444444433
No 124
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.90 E-value=75 Score=18.76 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHhcCCCccCHHHHHHHHHHCCCcc
Q 032845 63 ICKESKRQTINAEDVLKAIEEIDFTE 88 (132)
Q Consensus 63 ~a~~~kRKTI~~eDVl~AL~~lgf~~ 88 (132)
..-.++.-+|+.+++..+|..+|+.-
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~~ 47 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQTY 47 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCCC
Confidence 33456677899999999999998753
No 125
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=30.63 E-value=12 Score=35.76 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHCCCcccHHHHHHHHHHHHHHhhhhhhcCCC-cccCCCCcceeeeEee
Q 032845 78 LKAIEEIDFTEFVDPLRDSLDAKQIVSQKVVASNPL-FFFRGNHVRRIICHCI 129 (132)
Q Consensus 78 l~AL~~lgf~~y~~~l~~~l~~~k~~~q~~~~~~~~-~~~~g~~~~~~~~~~~ 129 (132)
|..+..+||.+|.=.++.+.+--| ....+ |||||.+.--.+|.|+
T Consensus 391 L~vI~~mgf~~YFLIV~D~I~~Ak-------~~gI~VGpGRGSaAgSlVaY~L 436 (1220)
T 2hpi_A 391 LSVIERMGFPGYFLIVQDYINWAR-------GHGVSVGPGRGSAAGSLVAYAV 436 (1220)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH-------TTTCCBCSCCGGGGGCHHHHHT
T ss_pred HHHHHhcCCCcEEeHHHHHHHHHH-------HCCCcccCCCChHHHHHHHHHh
Confidence 677889999999988888665333 34455 9999998887777764
No 126
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.30 E-value=49 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
++|..+..+|.. |...|...+...|+++|++.||=.-
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl~~ 41 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLLKD 41 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHCCS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 578888888875 5578889999999999999998443
No 127
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=30.28 E-value=98 Score=22.78 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=39.1
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
.+|...+..+++..+.. .++.++.++...|.+.+.--+..+-......+.. ..+|+.+||..++...
T Consensus 160 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATA 226 (319)
T ss_dssp CCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCC
Confidence 34556666666665542 2467899988888766543333222222222322 3479999988876544
No 128
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=30.09 E-value=75 Score=18.69 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDA 99 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~~ 99 (132)
...-.++.-.|+.+++..+|..+|..--...+...+..
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34446677889999999999999976444455544443
No 129
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=30.03 E-value=52 Score=24.54 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 56 LSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 56 ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
+..+|...|...++.+|+.+|+..|++
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 344555667777888999999998863
No 130
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=29.82 E-value=36 Score=21.11 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHC--CCcccHHHHH
Q 032845 72 INAEDVLKAIEEI--DFTEFVDPLR 94 (132)
Q Consensus 72 I~~eDVl~AL~~l--gf~~y~~~l~ 94 (132)
=|++||..-|+.+ ||.+|.+...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4789999999997 8888887654
No 131
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.71 E-value=27 Score=23.26 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHHCCCcc--cHHHH
Q 032845 72 INAEDVLKAIEEIDFTE--FVDPL 93 (132)
Q Consensus 72 I~~eDVl~AL~~lgf~~--y~~~l 93 (132)
=+++||..-|+.+||++ |.+..
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 56799999999999987 76654
No 132
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=29.62 E-value=1e+02 Score=22.66 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccCHHHHHHHHHHCCC
Q 032845 35 ISVHKDALLAFCESARI------------FIHYLSAT----ANDICKESKRQ-TINAEDVLKAIEEIDF 86 (132)
Q Consensus 35 ~~ISkDA~~al~~~a~~------------FI~~ltse----A~~~a~~~kRK-TI~~eDVl~AL~~lgf 86 (132)
..++.++...|.+.+.. ....+-.. +...+...+.. +|+.+||..|++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 57899998888887632 22222211 11222233333 5999999999987653
No 133
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=29.57 E-value=61 Score=26.45 Aligned_cols=63 Identities=6% Similarity=0.004 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CHHHHHHHHHHCCCcccHHHHHHHHHHHH
Q 032845 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTI-NAEDVLKAIEEIDFTEFVDPLRDSLDAKQ 101 (132)
Q Consensus 37 ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI-~~eDVl~AL~~lgf~~y~~~l~~~l~~~k 101 (132)
++.|-.+-+....+..-.|+.......-.... .. .=+..++-|+.+|+++|++..+..+++|+
T Consensus 471 ~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~~--~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 471 MDPSDATKLNTNNAEIFNTTMQKTATWMSKGG--IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCHHHHHHHHHHHHHHTTTHHHHHHHHHHHCC--HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 67776666666666666666665555555542 22 25778999999999999999999999986
No 134
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=29.26 E-value=25 Score=32.44 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=35.7
Q ss_pred HHHHHHCCCcccHHHHHHHHHHHHHHhhhhhhcCCCcccCCCCcceeeeEee
Q 032845 78 LKAIEEIDFTEFVDPLRDSLDAKQIVSQKVVASNPLFFFRGNHVRRIICHCI 129 (132)
Q Consensus 78 l~AL~~lgf~~y~~~l~~~l~~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~ 129 (132)
|..+..+||.+|.=.++.+.+--|+ ..=+-|||||.+.--.+|.|.
T Consensus 329 L~vI~~~gf~~YFLiV~d~v~~a~~------~gi~vGpGRGSaagSlVay~L 374 (910)
T 2hnh_A 329 LQVINQMGFPGYFLIVMEFIQWSKD------NGVPVGPGRGSGAGSLVAYAL 374 (910)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH------TTCCBCSCCTTGGGCHHHHHT
T ss_pred HHHHHhCCCcceeeHHHHHHHHHHH------CCceeCCCcccHHHHHHHHHh
Confidence 6788899999999998887665442 144667999999888888774
No 135
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=29.18 E-value=75 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CccCHHHHHHHHHHCC
Q 032845 49 ARIFIHYLSATANDICKESKR------------------QTINAEDVLKAIEEID 85 (132)
Q Consensus 49 a~~FI~~ltseA~~~a~~~kR------------------KTI~~eDVl~AL~~lg 85 (132)
...|..-|+-.=.++|..... -.||++||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 378888888888888865422 2899999999998875
No 136
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=28.90 E-value=91 Score=19.18 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHC---CCcccHHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDA 99 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~l---gf~~y~~~l~~~l~~ 99 (132)
.+....-.++.-+|+.+++..+|..+ |..--...+...+..
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (109)
T 1bu3_A 46 KAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKA 89 (109)
T ss_dssp HHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHH
Confidence 44555566778899999999999999 554334445544443
No 137
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=28.67 E-value=1.2e+02 Score=19.52 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
.+......++.-.|+.+++..+|..+|..--...+...+
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344455567778899999999999999654444444443
No 138
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=28.16 E-value=35 Score=19.77 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=15.2
Q ss_pred ccCHHHHHHHHHHCCCc
Q 032845 71 TINAEDVLKAIEEIDFT 87 (132)
Q Consensus 71 TI~~eDVl~AL~~lgf~ 87 (132)
++++++|+.+++++||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999986
No 139
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=28.15 E-value=34 Score=22.22 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHHCCC--cccHHHHH
Q 032845 71 TINAEDVLKAIEEIDF--TEFVDPLR 94 (132)
Q Consensus 71 TI~~eDVl~AL~~lgf--~~y~~~l~ 94 (132)
.=+++||..-|+.+|| .+|.+...
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F~ 44 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRFL 44 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4689999999999999 77775543
No 140
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.61 E-value=56 Score=28.34 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 032845 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (132)
Q Consensus 37 ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~ 82 (132)
+|..+..+|+. |...|...+...|+++|++.||=
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 45566666654 66888899999999999999974
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.53 E-value=1.3e+02 Score=22.19 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=37.5
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
.++...+..+++..+.. .++.++.++...|.+.+.--+..+-......+. ...+|+.+||..++...
T Consensus 168 ~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVASRA 234 (327)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHCCC
Confidence 34556666666665532 256789998888877653322222222211221 23478888887776543
No 142
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=27.17 E-value=1.1e+02 Score=21.00 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHHHHHHH
Q 032845 63 ICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDAKQIV 103 (132)
Q Consensus 63 ~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~~~k~~ 103 (132)
.....|+ .-+.+.++.||..+|..+.++.|+..+++---.
T Consensus 56 W~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~~~~ 95 (122)
T 3ezq_B 56 WKNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQARDLQ 95 (122)
T ss_dssp HHHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 3444553 347899999999999999999999988765433
No 143
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=27.09 E-value=1.3e+02 Score=19.40 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~ 98 (132)
.|....-.++.-.|+.+++..+|..+|..-=-..+...+.
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 126 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIR 126 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3555556677888999999999999986432344444443
No 144
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=27.07 E-value=61 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.1
Q ss_pred cCCCcccCCCCcceeeeEeee
Q 032845 110 SNPLFFFRGNHVRRIICHCII 130 (132)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~ 130 (132)
-.|.+.||++--++-.||.-|
T Consensus 82 ~~pRA~GRa~~i~k~~~HItv 102 (110)
T 1i4j_A 82 VLPRARGRADIIKKRTSHITV 102 (110)
T ss_dssp ECSCSSSCCCSCCEEEEEEEE
T ss_pred EeecCCCCCcccccCCeeEEE
Confidence 388999999999999999754
No 145
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=27.00 E-value=1e+02 Score=18.10 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=13.9
Q ss_pred HHhcCCCccCHHHHHHHHHHCC
Q 032845 64 CKESKRQTINAEDVLKAIEEID 85 (132)
Q Consensus 64 a~~~kRKTI~~eDVl~AL~~lg 85 (132)
.-.++.-+|+.+++..+|..+|
T Consensus 20 ~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 20 FDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HCTTCSSEEEHHHHHHHHHTTT
T ss_pred HCCCCCCCcCHHHHHHHHHHcC
Confidence 3345555677777777776666
No 146
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=26.98 E-value=1e+02 Score=18.31 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
...-.++.-.|+.+++..+|+.+|+.-=...+...
T Consensus 27 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l 61 (90)
T 1avs_A 27 DMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI 61 (90)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34445677789999999999999875333444443
No 147
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=26.86 E-value=1.1e+02 Score=18.65 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHC---CCcccHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLD 98 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~l---gf~~y~~~l~~~l~ 98 (132)
.+....-.++.-+|+.+++..+|..+ |..--...+...+.
T Consensus 45 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (109)
T 1rwy_A 45 KVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMA 87 (109)
T ss_dssp HHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 45555566778899999999999999 54433344444333
No 148
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=26.79 E-value=1.3e+02 Score=19.60 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHHH
Q 032845 58 ATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDA 99 (132)
Q Consensus 58 seA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~~ 99 (132)
..|....-.++--+|+.+++..+|..+|..--...+...+..
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 346666777888899999999999999987555555554443
No 149
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.75 E-value=33 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.6
Q ss_pred CccCHHHHHHHHHHCCCc
Q 032845 70 QTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 70 KTI~~eDVl~AL~~lgf~ 87 (132)
.+++.++|..+++.+||.
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 347899999999999986
No 150
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=26.52 E-value=43 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.3
Q ss_pred ccCHHHHHHHHHHC--CCcccHHHHHH
Q 032845 71 TINAEDVLKAIEEI--DFTEFVDPLRD 95 (132)
Q Consensus 71 TI~~eDVl~AL~~l--gf~~y~~~l~~ 95 (132)
.=|.+||..-|+.+ ||.+|.+...+
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~~ 42 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFRK 42 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHHH
Confidence 46899999999998 78888876543
No 151
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=26.42 E-value=39 Score=20.60 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.1
Q ss_pred ccCHHHHHHHHHHCCCc
Q 032845 71 TINAEDVLKAIEEIDFT 87 (132)
Q Consensus 71 TI~~eDVl~AL~~lgf~ 87 (132)
.++..|++++|+..||.
T Consensus 4 p~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHCCCE
Confidence 36889999999999996
No 152
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=26.24 E-value=32 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.8
Q ss_pred HHHHHHHHHCCCcc
Q 032845 75 EDVLKAIEEIDFTE 88 (132)
Q Consensus 75 eDVl~AL~~lgf~~ 88 (132)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 153
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.23 E-value=2e+02 Score=21.43 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=41.0
Q ss_pred ccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC-CCccCHHHHHHHHHHCC
Q 032845 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESK-RQTINAEDVLKAIEEID 85 (132)
Q Consensus 12 ~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~----~FI~~ltseA~~~a~~~k-RKTI~~eDVl~AL~~lg 85 (132)
.++...+..+++..+.. .++.++.++...|.+.+. ..++.+-..+ ..+...+ +++|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 34555566666655432 246788888888877643 3344443322 2333333 33899999999888554
No 154
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=25.96 E-value=1.4e+02 Score=19.38 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~ 98 (132)
.|....-.++.-+|+.+++..+|..+|..-=...+...+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3555566677889999999999999995433334444333
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=25.71 E-value=2e+02 Score=21.15 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC------------CCccCHHHHHHHHHHCCCcccHHHHH
Q 032845 36 SVHKDALLAFCESARIF----IHYLSATANDICKESK------------RQTINAEDVLKAIEEIDFTEFVDPLR 94 (132)
Q Consensus 36 ~ISkDA~~al~~~a~~F----I~~ltseA~~~a~~~k------------RKTI~~eDVl~AL~~lgf~~y~~~l~ 94 (132)
.++.++...+.+.+.-| +..|..+|...+.+.. ..+|+.+|+..|++...-.-....+.
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 46666666666554332 3344455544444432 36899999999999887554444443
No 156
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=25.42 E-value=1.5e+02 Score=19.60 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=38.2
Q ss_pred HhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHHHHHHHhhh--hhhcCCCcccCCCCccee
Q 032845 65 KESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDAKQIVSQK--VVASNPLFFFRGNHVRRI 124 (132)
Q Consensus 65 ~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~~~k~~~q~--~~~~~~~~~~~g~~~~~~ 124 (132)
...--|||.|.+|-.||..-++-.+.+.+...--.--..-.. -...+|.-|..=+|+-|+
T Consensus 18 ~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~G~v~I~qkG~pVdp~~~rGpiRi 79 (85)
T 2ns0_A 18 ARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVEVTQKGAVVDPRSARGPIRI 79 (85)
T ss_dssp HSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEEEEETTEECCTTTCCSCCEE
T ss_pred HhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHCCcEEEEECCEEcCcccCCCCEEe
Confidence 344569999999999998777888888887755444321111 113555555555666664
No 157
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=25.37 E-value=1.3e+02 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHC----CCc
Q 032845 58 ATANDICKESKRQTINAEDVLKAIEEI----DFT 87 (132)
Q Consensus 58 seA~~~a~~~kRKTI~~eDVl~AL~~l----gf~ 87 (132)
..|....- ++--+|+.+++..+|..+ |+.
T Consensus 79 ~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 79 QHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 45667777 778899999999999999 875
No 158
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=25.12 E-value=1.2e+02 Score=18.49 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHC---CCcccHHHHHHHHHH
Q 032845 58 ATANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDA 99 (132)
Q Consensus 58 seA~~~a~~~kRKTI~~eDVl~AL~~l---gf~~y~~~l~~~l~~ 99 (132)
..+....-.++.-+|+.+++..+|..+ |..--...+...+..
T Consensus 44 ~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 88 (108)
T 2pvb_A 44 KKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD 88 (108)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 345555666778899999999999999 554333444444433
No 159
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.02 E-value=1.2e+02 Score=18.35 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 61 NDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 61 ~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
......++.-+|+.+++..+|..+|+.
T Consensus 33 F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 33 FAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 344556777899999999999999964
No 160
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=24.60 E-value=49 Score=22.46 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=23.8
Q ss_pred hhhcccchhHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 032845 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCE 47 (132)
Q Consensus 8 ~Ed~~LP~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~ 47 (132)
.+.+..-+|+|+|+ +.+| ..++++.+..|.+
T Consensus 65 A~~lGiS~stISRi-~r~L--------~~l~~~~k~~l~~ 95 (101)
T 1jhg_A 65 KNELGAGIATITRG-SNSL--------KAAPVELRQWLEE 95 (101)
T ss_dssp HHHHCCCHHHHHHH-HHHH--------HHSCHHHHHHHHH
T ss_pred HHHHCCChhhhhHH-HHHH--------HHccHHHHHHHHH
Confidence 35678889999999 8887 3677888877764
No 161
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.25 E-value=1.7e+02 Score=19.82 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~ 96 (132)
+|...--.++.-+|+.+++..+|..+|..-=-..+...
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l 126 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDI 126 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45666667788899999999999999975333444443
No 162
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.19 E-value=45 Score=21.20 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.0
Q ss_pred cCCCccCHHHHHHHHHHCCCc
Q 032845 67 SKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 67 ~kRKTI~~eDVl~AL~~lgf~ 87 (132)
..++-|+.+.++..|+.+||.
T Consensus 56 a~~~gid~d~l~~~L~~~g~~ 76 (81)
T 2fi0_A 56 SKLAGTPMDKIVRTLEANGYE 76 (81)
T ss_dssp HHHHTCCHHHHHHHHHHTTCE
T ss_pred HHHcCCCHHHHHHHHHHcCCE
Confidence 345669999999999999996
No 163
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=24.15 E-value=1.2e+02 Score=18.00 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=14.2
Q ss_pred HhcCCCccCHHHHHHHHHHCCCc
Q 032845 65 KESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 65 ~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
..++.-.|+.+++..+|..+|..
T Consensus 19 D~d~~G~i~~~el~~~l~~~g~~ 41 (92)
T 2kn2_A 19 DKDQNGYISASELRHVMINLGEK 41 (92)
T ss_dssp CTTCSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCCeEcHHHHHHHHHHhCCC
Confidence 34455567777777777666643
No 164
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=24.07 E-value=1.4e+02 Score=20.54 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 60 ANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
+....-.++.-+|+.+++..+|+.+|+.
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 3344446677899999999999999875
No 165
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=24.02 E-value=64 Score=19.96 Aligned_cols=24 Identities=4% Similarity=0.261 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHHC--CCcccHHHHHH
Q 032845 72 INAEDVLKAIEEI--DFTEFVDPLRD 95 (132)
Q Consensus 72 I~~eDVl~AL~~l--gf~~y~~~l~~ 95 (132)
=+++||..-|+.+ |+..|.+...+
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~~ 32 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFER 32 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4789999999998 48888876644
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.77 E-value=19 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHC
Q 032845 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (132)
Q Consensus 53 I~~ltseA~~~a~~~kRKTI~~eDVl~AL~~l 84 (132)
|..+...|...|...++.+|+.+|+..|+++.
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44445556666666777888888888887654
No 167
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=23.07 E-value=1.5e+02 Score=18.69 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHH
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~ 98 (132)
.+....-.++.-.|+.+++..+|..+|..-=...+...+.
T Consensus 83 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 122 (142)
T 2bl0_C 83 QAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLG 122 (142)
T ss_dssp HHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444455567778999999999999986432334444333
No 168
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.04 E-value=1.5e+02 Score=18.68 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=7.4
Q ss_pred CccCHHHHHHHHHHCCC
Q 032845 70 QTINAEDVLKAIEEIDF 86 (132)
Q Consensus 70 KTI~~eDVl~AL~~lgf 86 (132)
-+|+.+++..+|..+|+
T Consensus 23 G~i~~~el~~~l~~~~~ 39 (149)
T 2mys_C 23 AKITASQVGDIARALGQ 39 (149)
T ss_pred CcCcHHHHHHHHHHhCC
Confidence 34444444444444443
No 169
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=22.85 E-value=55 Score=17.59 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.7
Q ss_pred cCHHHHHHHHHHCCCc
Q 032845 72 INAEDVLKAIEEIDFT 87 (132)
Q Consensus 72 I~~eDVl~AL~~lgf~ 87 (132)
++.+++..+++.+||.
T Consensus 47 ~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 47 LGEEQLRTAIASAGYE 62 (64)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5788999999999985
No 170
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=22.79 E-value=82 Score=21.81 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
..-...|++--+.++++.||+++++..-.+.+++.+
T Consensus 63 ~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l 98 (112)
T 1ich_A 63 TWRRRTPRREATLELLGRVLRDMDLLGCLEDIEEAL 98 (112)
T ss_dssp HHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677788889999999999999998777777654
No 171
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.66 E-value=39 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHCCCcccHH
Q 032845 72 INAEDVLKAIEEIDFTEFVD 91 (132)
Q Consensus 72 I~~eDVl~AL~~lgf~~y~~ 91 (132)
.+.+.|+..|+.+||.+|+.
T Consensus 107 ~~~~~vle~Lk~~gl~~~Ir 126 (171)
T 2p2u_A 107 ITKDMTLERLRQFGISEGIR 126 (171)
T ss_dssp CCHHHHHHHHHHTTCCTTCC
T ss_pred CCHHHHHHHHHHCCcHhhee
Confidence 35689999999999999875
No 172
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=22.61 E-value=1.9e+02 Score=24.33 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=32.2
Q ss_pred cchhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCccCHHHHH
Q 032845 34 DISVHKDALLAFCESARI-------------FIHYLSATANDICKESKRQTINAEDVL 78 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~-------------FI~~ltseA~~~a~~~kRKTI~~eDVl 78 (132)
.+.++.+..+.+.+.+.. -...+...|...|.-.+|..|+++||.
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 467788887777766532 122344556677888999999999998
No 173
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=22.60 E-value=90 Score=19.78 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 60 ANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
|.-++...+...++++||...|+..|.+
T Consensus 7 A~Lll~~~g~~~~ta~~I~~il~aaGve 34 (70)
T 2lbf_B 7 SYLLAALGGNSSPSAKDIKKILDSVGIE 34 (70)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHcCCC
Confidence 4455666677799999999999999975
No 174
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=21.96 E-value=1.6e+02 Score=18.72 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=21.9
Q ss_pred HhcC-CCccCHHHHHHHHHHCCCcccHHHHHH
Q 032845 65 KESK-RQTINAEDVLKAIEEIDFTEFVDPLRD 95 (132)
Q Consensus 65 ~~~k-RKTI~~eDVl~AL~~lgf~~y~~~l~~ 95 (132)
..++ --+|+.+++..+|+.+|+.--...+..
T Consensus 24 D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~ 55 (146)
T 2qac_A 24 NEKSSGGKISIDNASYNARKLGLAPSSIDEKK 55 (146)
T ss_dssp HHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CccCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445 668999999999999987644444444
No 175
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.95 E-value=1.8e+02 Score=19.28 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+....-.++.-+|+.+++..+|..+|..
T Consensus 81 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 109 (173)
T 1alv_A 81 AIYKQFDVDRSGTIGSSELPGAFEAAGFH 109 (173)
T ss_dssp HHHHHHCTTCCSSBCTTTHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHcCCC
Confidence 34555556777899999999999998865
No 176
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=21.74 E-value=1.8e+02 Score=19.25 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 56666667778889999999999998864
No 177
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=21.48 E-value=2.4e+02 Score=22.72 Aligned_cols=68 Identities=6% Similarity=0.020 Sum_probs=42.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--CHHHHHHHHHHCCCcccHHHHHHHHHHHHHH
Q 032845 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI--NAEDVLKAIEEIDFTEFVDPLRDSLDAKQIV 103 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI--~~eDVl~AL~~lgf~~y~~~l~~~l~~~k~~ 103 (132)
.+.++.+-...+....+..-.++.......-.. +.-+ .-+..++.|+.+|++.+++..++.+++|++.
T Consensus 423 ~~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i~G--~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~ 492 (502)
T 3vlv_A 423 GVNLTVEEREIYDKYWPDVKTYMFEMGQSWVMG--TKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGG 492 (502)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh
Confidence 456665544444444444444554443344332 2334 2567889999999999999999999999744
No 178
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=21.47 E-value=82 Score=18.28 Aligned_cols=32 Identities=3% Similarity=0.047 Sum_probs=20.2
Q ss_pred HhcCCCccCHHHHHHHHHHCC-CcccHHHHHHH
Q 032845 65 KESKRQTINAEDVLKAIEEID-FTEFVDPLRDS 96 (132)
Q Consensus 65 ~~~kRKTI~~eDVl~AL~~lg-f~~y~~~l~~~ 96 (132)
-.++--+|+.+++..+|..+| ..--...+...
T Consensus 18 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 50 (81)
T 1c7v_A 18 DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA 50 (81)
T ss_dssp SCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 345556788888888888887 54333344433
No 179
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=21.46 E-value=94 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 57 SATANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 57 tseA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
..+|.+.|...+-.--|.+++..|.+ .||+
T Consensus 16 f~eA~~aC~~~ga~LAs~~QL~~A~~-~G~~ 45 (98)
T 1o7b_T 16 YAEAKAVCEFEGGHLATYKQLEAARK-IGFH 45 (98)
T ss_dssp HHHHHHHHHHSSCEECCHHHHHHHHT-TTCC
T ss_pred HHHHHHHHHhcCCccCCHHHHHHHHH-cCcc
Confidence 36899999999999999999999988 8886
No 180
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=21.34 E-value=75 Score=24.70 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=13.4
Q ss_pred CccCHHHHHHHHHHCC
Q 032845 70 QTINAEDVLKAIEEID 85 (132)
Q Consensus 70 KTI~~eDVl~AL~~lg 85 (132)
..||++||+.|++.|.
T Consensus 113 ~~IS~dDi~rAik~L~ 128 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKLK 128 (234)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CccCHHHHHHHHHHHH
Confidence 5799999999987664
No 181
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.82 E-value=1.9e+02 Score=19.45 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=37.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHH
Q 032845 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97 (132)
Q Consensus 34 ~~~ISkDA~~al~~~a~~FI~~ltseA~~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l 97 (132)
.+.+|.+-..-|.+ |...--.++--+|+.+++..+|+.||+.--...+...+
T Consensus 7 ~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 7 RVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 56788776665554 34445567778999999999999999986666655544
No 182
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=20.72 E-value=3e+02 Score=21.43 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=42.8
Q ss_pred hhHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCHHHHH
Q 032845 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI----FIHYLSATANDICKES------------KRQTINAEDVL 78 (132)
Q Consensus 15 ~a~V~RimK~~Lp~~~~d~~~~ISkDA~~al~~~a~~----FI~~ltseA~~~a~~~------------kRKTI~~eDVl 78 (132)
......|++..+.. .+..++.++...|.+.+.- -|..|...|...+.+. ....|+.+|+.
T Consensus 284 ~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~ 359 (389)
T 3vfd_A 284 EETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFT 359 (389)
T ss_dssp HHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHH
Confidence 34455555555532 1355777777777665433 4445555555555443 45689999999
Q ss_pred HHHHHCCCc
Q 032845 79 KAIEEIDFT 87 (132)
Q Consensus 79 ~AL~~lgf~ 87 (132)
.|++...-.
T Consensus 360 ~al~~~~~s 368 (389)
T 3vfd_A 360 ESLKKIKRS 368 (389)
T ss_dssp HHHHHCCCS
T ss_pred HHHHHcCCC
Confidence 999987644
No 183
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=20.66 E-value=1.7e+02 Score=19.61 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHHHCCCc
Q 032845 59 TANDICKESKRQTINAEDVLKAIEEIDFT 87 (132)
Q Consensus 59 eA~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (132)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 145 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGIS 145 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 55566666778899999999999998864
No 184
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=20.44 E-value=65 Score=21.62 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHC--CCcccHHHHH
Q 032845 71 TINAEDVLKAIEEI--DFTEFVDPLR 94 (132)
Q Consensus 71 TI~~eDVl~AL~~l--gf~~y~~~l~ 94 (132)
.=+++||..-|+.+ ||.+|.+...
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F~ 50 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLFA 50 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHHH
Confidence 46899999999999 9998886553
No 185
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=20.38 E-value=2e+02 Score=19.36 Aligned_cols=37 Identities=3% Similarity=0.073 Sum_probs=24.3
Q ss_pred HHHHhcCCCccCHHHHHHHHHHCCCcccHHHHHHHHH
Q 032845 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (132)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~y~~~l~~~l~ 98 (132)
...-.++--+|+.+++..+|..+|+.--...+...+.
T Consensus 44 ~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 80 (204)
T 3e3r_A 44 RQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCR 80 (204)
T ss_dssp HHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344566778888888888888887644444444443
No 186
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=20.30 E-value=63 Score=25.46 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCcccHHHHHHHHHHH
Q 032845 74 AEDVLKAIEEIDFTEFVDPLRDSLDAK 100 (132)
Q Consensus 74 ~eDVl~AL~~lgf~~y~~~l~~~l~~~ 100 (132)
-++.++-|+.+|++++++..++.+++|
T Consensus 463 ~d~~v~~l~~~G~d~~~~~~q~~ydr~ 489 (490)
T 3a09_A 463 WNDYQQQLKNRGFYQVMIVMQKAYDRQ 489 (490)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 356788899999999999999888876
Done!